CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 109686 479220 18.63 588906 2 102000 456457 18.26 558457 3 96477 454732 17.50 551209 4 95861 440964 17.86 536825 5 93459 450468 17.18 543927 6 93024 439478 17.47 532502 7 92602 434694 17.56 527296 8 92855 436382 17.55 529237 9 93112 437827 17.54 530939 10 94365 443066 17.56 537431 11 95224 445676 17.60 540900 12 96080 452869 17.50 548949 13 96365 447842 17.71 544207 14 96386 450698 17.62 547084 15 96211 446524 17.73 542735 16 96274 445454 17.77 541728 17 95542 441894 17.78 537436 18 96335 445345 17.78 541680 19 95801 442763 17.79 538564 20 96245 445247 17.77 541492 21 96411 446932 17.74 543343 22 95071 448164 17.50 543235 23 96107 449526 17.61 545633 24 95982 451877 17.52 547859 25 96145 450112 17.60 546257 26 95473 448938 17.54 544411 27 95689 450293 17.53 545982 28 95518 447086 17.60 542604 29 96233 448837 17.66 545070 30 96519 451258 17.62 547777 31 95750 450473 17.53 546223 32 95408 449993 17.49 545401 33 96475 451055 17.62 547530 34 95825 451928 17.49 547753 35 95829 451201 17.52 547030 36 96585 453644 17.55 550229 37 96080 451605 17.54 547685 38 96394 451627 17.59 548021 39 95908 448603 17.61 544511 40 95866 450635 17.54 546501 41 94904 448673 17.46 543577 42 95326 450808 17.45 546134 43 96372 451128 17.60 547500 44 95922 450569 17.55 546491 45 96715 451338 17.65 548053 46 96534 452548 17.58 549082 47 96103 447222 17.69 543325 48 96453 451556 17.60 548009 49 95456 446862 17.60 542318 50 95661 450485 17.52 546146 51 95739 451540 17.49 547279 52 96018 450615 17.57 546633 53 95355 447712 17.56 543067 54 96052 449757 17.60 545809 55 96373 449643 17.65 546016 56 96429 450635 17.63 547064 57 95562 450190 17.51 545752 58 95566 449988 17.52 545554 59 95497 446401 17.62 541898 60 96083 449525 17.61 545608 61 95062 447029 17.54 542091 62 94564 449989 17.37 544553 63 95206 447586 17.54 542792 64 95075 447726 17.52 542801 65 95757 446400 17.66 542157 66 96717 450005 17.69 546722 67 95482 448591 17.55 544073 68 95595 448221 17.58 543816 69 95236 444670 17.64 539906 70 95232 445104 17.62 540336 71 94850 446335 17.53 541185 72 95647 447123 17.62 542770 73 94893 446723 17.52 541616 74 95366 451012 17.45 546378 75 94924 447662 17.49 542586 76 94915 446117 17.54 541032 77 94336 446192 17.45 540528 78 94683 448663 17.43 543346 79 94768 445710 17.53 540478 80 94610 445889 17.50 540499 81 94724 444779 17.56 539503 82 94382 444417 17.52 538799 83 94989 443094 17.65 538083 84 94392 445918 17.47 540310 85 94341 443552 17.54 537893 86 94792 447567 17.48 542359 87 95150 446126 17.58 541276 88 95211 445727 17.60 540938 89 95322 446118 17.61 541440 90 94880 447737 17.49 542617 91 94193 443993 17.50 538186 92 94665 448365 17.43 543030 93 92749 450727 17.07 543476 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 8128 793639 1.01 801767 2 7412 799642 0.92 807054 3 7310 802745 0.90 810055 4 7190 794173 0.90 801363 5 7133 812848 0.87 819981 6 7349 805049 0.90 812398 7 6919 797449 0.86 804368 8 7195 808263 0.88 815458 9 7340 803148 0.91 810488 10 7415 808994 0.91 816409 11 7644 811466 0.93 819110 12 7401 817127 0.90 824528 13 7379 812337 0.90 819716 14 7542 810716 0.92 818258 15 7567 820615 0.91 828182 16 7452 822000 0.90 829452 17 7516 820532 0.91 828048 18 7652 816202 0.93 823854 19 7714 814470 0.94 822184 20 8107 822160 0.98 830267 21 8200 822519 0.99 830719 22 8475 823684 1.02 832159 23 8098 820012 0.98 828110 24 8293 827388 0.99 835681 25 8206 829633 0.98 837839 26 8088 829645 0.97 837733 27 8332 825741 1.00 834073 28 8095 822425 0.97 830520 29 8222 825131 0.99 833353 30 8247 828810 0.99 837057 31 8234 821461 0.99 829695 32 8160 824213 0.98 832373 33 8314 823618 1.00 831932 34 8274 823739 0.99 832013 35 8086 825718 0.97 833804 36 8420 830079 1.00 838499 37 8467 826384 1.01 834851 38 8330 828868 0.99 837198 39 8422 829326 1.01 837748 40 8388 824904 1.01 833292 41 8259 823589 0.99 831848 42 8306 827513 0.99 835819 43 8197 824608 0.98 832805 44 8320 827476 1.00 835796 45 8268 824965 0.99 833233 46 8264 825869 0.99 834133 47 8371 825683 1.00 834054 48 8407 833229 1.00 841636 49 8139 827260 0.97 835399 50 9274 825827 1.11 835101 51 8549 822354 1.03 830903 52 8493 822566 1.02 831059 53 8469 819577 1.02 828046 54 8455 826350 1.01 834805 55 8510 826263 1.02 834773 56 8571 825461 1.03 834032 57 8480 822825 1.02 831305 58 8492 824918 1.02 833410 59 8445 825684 1.01 834129 60 8696 826600 1.04 835296 61 8527 821905 1.03 830432 62 8669 825768 1.04 834437 63 8353 821029 1.01 829382 64 8503 820041 1.03 828544 65 8447 818517 1.02 826964 66 8595 823508 1.03 832103 67 8621 820258 1.04 828879 68 8711 823146 1.05 831857 69 9160 819278 1.11 828438 70 8317 820161 1.00 828478 71 8419 816308 1.02 824727 72 8750 819092 1.06 827842 73 8518 816999 1.03 825517 74 8696 820686 1.05 829382 75 8633 818803 1.04 827436 76 8447 819780 1.02 828227 77 8743 815976 1.06 824719 78 8636 822825 1.04 831461 79 8833 816168 1.07 825001 80 8604 815607 1.04 824211 81 8734 818554 1.06 827288 82 8819 818284 1.07 827103 83 8919 815392 1.08 824311 84 8950 818597 1.08 827547 85 8784 813743 1.07 822527 86 8940 815429 1.08 824369 87 9062 811188 1.10 820250 88 9099 813916 1.11 823015 89 9390 814059 1.14 823449 90 9761 819668 1.18 829429 91 9810 815300 1.19 825110 92 10289 817546 1.24 827835 93 10731 814958 1.30 825689 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 31052 2968756 1.04 2999808 2 29674 3075196 0.96 3104870 3 28304 3184315 0.88 3212619 4 28283 3172129 0.88 3200412 5 27994 3227219 0.86 3255213 6 28462 3205549 0.88 3234011 7 28221 3194479 0.88 3222700 8 27946 3205277 0.86 3233223 9 28351 3184876 0.88 3213227 10 29210 3182041 0.91 3211251 11 29367 3196111 0.91 3225478 12 29612 3222058 0.91 3251670 13 29426 3204728 0.91 3234154 14 29759 3229707 0.91 3259466 15 29638 3235031 0.91 3264669 16 29592 3225057 0.91 3254649 17 29876 3212333 0.92 3242209 18 30132 3220159 0.93 3250291 19 29942 3214866 0.92 3244808 20 31263 3208070 0.97 3239333 21 31179 3217000 0.96 3248179 22 32489 3208353 1.00 3240842 23 30980 3216649 0.95 3247629 24 31339 3232160 0.96 3263499 25 31595 3218878 0.97 3250473 26 31335 3217956 0.96 3249291 27 31654 3219383 0.97 3251037 28 30942 3211123 0.95 3242065 29 31339 3211108 0.97 3242447 30 31424 3220295 0.97 3251719 31 31023 3208446 0.96 3239469 32 31124 3219752 0.96 3250876 33 31288 3228296 0.96 3259584 34 31309 3226836 0.96 3258145 35 31371 3223306 0.96 3254677 36 31692 3233981 0.97 3265673 37 31626 3217780 0.97 3249406 38 31609 3223482 0.97 3255091 39 31504 3223426 0.97 3254930 40 31575 3215208 0.97 3246783 41 31576 3211438 0.97 3243014 42 31410 3221640 0.97 3253050 43 31195 3210601 0.96 3241796 44 31303 3217998 0.96 3249301 45 31379 3220748 0.96 3252127 46 31601 3217992 0.97 3249593 47 31833 3214025 0.98 3245858 48 31905 3229211 0.98 3261116 49 31611 3210660 0.97 3242271 50 35170 3212898 1.08 3248068 51 32189 3214891 0.99 3247080 52 32027 3212873 0.99 3244900 53 31902 3214808 0.98 3246710 54 32585 3233276 1.00 3265861 55 32284 3211559 1.00 3243843 56 32290 3219626 0.99 3251916 57 32180 3221337 0.99 3253517 58 32208 3213904 0.99 3246112 59 31871 3205755 0.98 3237626 60 32523 3214692 1.00 3247215 61 32018 3199567 0.99 3231585 62 32364 3210355 1.00 3242719 63 32164 3205341 0.99 3237505 64 32471 3206677 1.00 3239148 65 32671 3208424 1.01 3241095 66 32635 3220146 1.00 3252781 67 32526 3198837 1.01 3231363 68 32778 3210673 1.01 3243451 69 34389 3198819 1.06 3233208 70 32469 3199144 1.00 3231613 71 32406 3195098 1.00 3227504 72 34069 3208834 1.05 3242903 73 32440 3197171 1.00 3229611 74 32913 3205525 1.02 3238438 75 32649 3204885 1.01 3237534 76 32669 3205242 1.01 3237911 77 32570 3191697 1.01 3224267 78 33169 3206797 1.02 3239966 79 32867 3189895 1.02 3222762 80 33541 3188875 1.04 3222416 81 33474 3185881 1.04 3219355 82 33416 3184473 1.04 3217889 83 33403 3177178 1.04 3210581 84 34081 3192698 1.06 3226779 85 33740 3178150 1.05 3211890 86 34214 3178856 1.06 3213070 87 34354 3179632 1.07 3213986 88 34339 3184346 1.07 3218685 89 35489 3187807 1.10 3223296 90 36178 3208105 1.12 3244283 91 36817 3190245 1.14 3227062 92 37232 3201883 1.15 3239115 93 38763 3193554 1.20 3232317 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 325051 505154 39.15 830205 2 202622 454447 30.84 657069 3 177580 486777 26.73 664357 4 166630 513366 24.50 679996 5 136558 504257 21.31 640815 6 121244 481783 20.11 603027 7 111651 461917 19.47 573568 8 104611 452857 18.77 557468 9 99214 444591 18.24 543805 10 95431 435552 17.97 530983 11 94646 428714 18.08 523360 12 93494 424911 18.03 518405 13 93349 423349 18.07 516698 14 93684 421579 18.18 515263 15 93743 420871 18.22 514614 16 92952 419166 18.15 512118 17 94292 418371 18.39 512663 18 93941 417900 18.35 511841 19 93917 417715 18.36 511632 20 93933 417393 18.37 511326 21 94319 419993 18.34 514312 22 94160 420322 18.30 514482 23 93890 421027 18.23 514917 24 94721 422017 18.33 516738 25 94439 422101 18.28 516540 26 93874 421871 18.20 515745 27 94388 421321 18.30 515709 28 94128 419915 18.31 514043 29 93295 418899 18.21 512194 30 94078 417825 18.38 511903 31 93470 417222 18.30 510692 32 92770 417301 18.19 510071 33 92846 416802 18.22 509648 34 92622 416795 18.18 509417 35 92605 415800 18.21 508405 36 92296 415736 18.17 508032 37 91737 414929 18.11 506666 38 91195 413127 18.08 504322 39 90959 411637 18.10 502596 40 91091 411949 18.11 503040 41 91431 409731 18.24 501162 42 90414 409695 18.08 500109 43 90785 408870 18.17 499655 44 90467 407921 18.15 498388 45 89777 408610 18.01 498387 46 89746 406364 18.09 496110 47 89303 405976 18.03 495279 48 89347 405189 18.07 494536 49 89783 402591 18.23 492374 50 88993 400031 18.20 489024 51 88555 399600 18.14 488155 52 87942 397785 18.11 485727 53 87498 396812 18.07 484310 54 87243 396134 18.05 483377 55 86889 394617 18.05 481506 56 87119 392304 18.17 479423 57 86853 392450 18.12 479303 58 86225 390181 18.10 476406 59 86098 386960 18.20 473058 60 85494 386136 18.13 471630 61 84526 384341 18.03 468867 62 84050 381580 18.05 465630 63 84409 380374 18.16 464783 64 83487 378324 18.08 461811 65 83597 377501 18.13 461098 66 82950 376545 18.05 459495 67 82768 375139 18.08 457907 68 82894 373559 18.16 456453 69 81903 370285 18.11 452188 70 82002 368192 18.21 450194 71 80773 366910 18.04 447683 72 80604 364666 18.10 445270 73 79792 363562 18.00 443354 74 80247 362327 18.13 442574 75 79149 360204 18.01 439353 76 79226 357552 18.14 436778 77 79148 356875 18.15 436023 78 78444 355361 18.08 433805 79 77415 351997 18.03 429412 80 76986 350146 18.02 427132 81 77064 346928 18.18 423992 82 75819 344819 18.02 420638 83 75560 343237 18.04 418797 84 75417 341576 18.09 416993 85 74528 339598 18.00 414126 86 74163 336103 18.08 410266 87 73604 334904 18.02 408508 88 73067 331803 18.05 404870 89 72675 330868 18.01 403543 90 72006 327385 18.03 399391 91 71602 327936 17.92 399538 92 71835 326657 18.03 398492 93 71676 325844 18.03 397520 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 407074 683710 37.32 1090784 2 330491 805946 29.08 1136437 3 147989 717607 17.10 865596 4 112504 799315 12.34 911819 5 81168 839231 8.82 920399 6 50057 810665 5.82 860722 7 35315 795430 4.25 830745 8 23248 775506 2.91 798754 9 17329 777253 2.18 794582 10 13760 768105 1.76 781865 11 11565 763667 1.49 775232 12 10048 757040 1.31 767088 13 9070 753337 1.19 762407 14 8807 752439 1.16 761246 15 8534 750544 1.12 759078 16 8257 749506 1.09 757763 17 8232 749579 1.09 757811 18 8089 749311 1.07 757400 19 7718 750423 1.02 758141 20 7840 749064 1.04 756904 21 7553 749229 1.00 756782 22 8538 748593 1.13 757131 23 7843 750394 1.03 758237 24 7521 748899 0.99 756420 25 7657 746421 1.02 754078 26 7348 747401 0.97 754749 27 7703 745270 1.02 752973 28 7396 747406 0.98 754802 29 7331 745670 0.97 753001 30 7777 744987 1.03 752764 31 7468 744398 0.99 751866 32 7533 745317 1.00 752850 33 7459 741923 1.00 749382 34 7060 743034 0.94 750094 35 7314 742878 0.97 750192 36 7285 739539 0.98 746824 37 7183 740178 0.96 747361 38 7422 738801 0.99 746223 39 7300 735603 0.98 742903 40 7242 735344 0.98 742586 41 7245 734176 0.98 741421 42 7208 733369 0.97 740577 43 7181 729698 0.97 736879 44 7212 727664 0.98 734876 45 7007 726920 0.95 733927 46 7005 726258 0.96 733263 47 7274 723849 0.99 731123 48 7070 722119 0.97 729189 49 7344 719606 1.01 726950 50 7159 717789 0.99 724948 51 7210 714878 1.00 722088 52 7274 710444 1.01 717718 53 7161 710646 1.00 717807 54 7217 708026 1.01 715243 55 7506 702211 1.06 709717 56 7264 701597 1.02 708861 57 6909 698369 0.98 705278 58 6999 697709 0.99 704708 59 7032 693808 1.00 700840 60 7053 690179 1.01 697232 61 7019 687760 1.01 694779 62 7086 683395 1.03 690481 63 7019 682378 1.02 689397 64 6994 676178 1.02 683172 65 6997 674416 1.03 681413 66 7111 671386 1.05 678497 67 7120 669441 1.05 676561 68 7048 666229 1.05 673277 69 7082 663199 1.06 670281 70 6875 660655 1.03 667530 71 7259 659157 1.09 666416 72 7088 655951 1.07 663039 73 7223 652028 1.10 659251 74 7072 649662 1.08 656734 75 7019 643669 1.08 650688 76 6910 641815 1.07 648725 77 7217 636526 1.12 643743 78 6999 635084 1.09 642083 79 6998 629564 1.10 636562 80 6916 624451 1.10 631367 81 7119 621887 1.13 629006 82 7494 615574 1.20 623068 83 6932 612911 1.12 619843 84 6888 607145 1.12 614033 85 6811 604774 1.11 611585 86 6961 600583 1.15 607544 87 6820 597271 1.13 604091 88 7001 592353 1.17 599354 89 6909 589834 1.16 596743 90 7051 585442 1.19 592493 91 6698 582456 1.14 589154 92 7189 582989 1.22 590178 93 7108 577667 1.22 584775 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1402346 2466500 36.25 3868846 2 1078792 2601761 29.31 3680553 3 859453 2742615 23.86 3602068 4 634481 2814109 18.40 3448590 5 399105 2861909 12.24 3261014 6 267088 2864776 8.53 3131864 7 179448 2858668 5.91 3038116 8 120258 2860352 4.03 2980610 9 85920 2902130 2.88 2988050 10 64345 2932826 2.15 2997171 11 51001 2967130 1.69 3018131 12 43213 2983345 1.43 3026558 13 38019 2997057 1.25 3035076 14 35505 3006724 1.17 3042229 15 34468 3011585 1.13 3046053 16 33792 3007932 1.11 3041724 17 32771 3004425 1.08 3037196 18 33023 2998321 1.09 3031344 19 31191 2998250 1.03 3029441 20 31890 2998879 1.05 3030769 21 31022 2998745 1.02 3029767 22 32536 2999961 1.07 3032497 23 32780 2999521 1.08 3032301 24 31596 3002517 1.04 3034113 25 31762 2992263 1.05 3024025 26 30683 2989705 1.02 3020388 27 31328 2981459 1.04 3012787 28 30163 2976016 1.00 3006179 29 29942 2971960 1.00 3001902 30 30762 2972586 1.02 3003348 31 30172 2969917 1.01 3000089 32 29886 2966097 1.00 2995983 33 29715 2959370 0.99 2989085 34 28941 2959300 0.97 2988241 35 29837 2950485 1.00 2980322 36 29869 2947327 1.00 2977196 37 29165 2936534 0.98 2965699 38 29394 2928046 0.99 2957440 39 28724 2922872 0.97 2951596 40 29089 2913547 0.99 2942636 41 28867 2916507 0.98 2945374 42 28344 2908918 0.96 2937262 43 29067 2904007 0.99 2933074 44 28765 2895575 0.98 2924340 45 28113 2888530 0.96 2916643 46 28235 2877735 0.97 2905970 47 28878 2868060 1.00 2896938 48 28608 2860392 0.99 2889000 49 28990 2849682 1.01 2878672 50 28592 2842574 1.00 2871166 51 28912 2827076 1.01 2855988 52 28584 2821626 1.00 2850210 53 28711 2812780 1.01 2841491 54 28361 2807951 1.00 2836312 55 29661 2795877 1.05 2825538 56 28816 2788762 1.02 2817578 57 28072 2778590 1.00 2806662 58 27662 2767727 0.99 2795389 59 27915 2759331 1.00 2787246 60 28214 2745479 1.02 2773693 61 27831 2735851 1.01 2763682 62 28513 2719082 1.04 2747595 63 27698 2712109 1.01 2739807 64 27624 2698596 1.01 2726220 65 27896 2682173 1.03 2710069 66 28130 2669833 1.04 2697963 67 27856 2657610 1.04 2685466 68 27483 2647823 1.03 2675306 69 28223 2634043 1.06 2662266 70 27713 2621872 1.05 2649585 71 27969 2612231 1.06 2640200 72 27915 2598555 1.06 2626470 73 28247 2588565 1.08 2616812 74 27408 2577750 1.05 2605158 75 27481 2562434 1.06 2589915 76 28165 2545579 1.09 2573744 77 27859 2533116 1.09 2560975 78 27134 2522716 1.06 2549850 79 27378 2502633 1.08 2530011 80 27797 2491805 1.10 2519602 81 27809 2477274 1.11 2505083 82 29312 2457267 1.18 2486579 83 27116 2452663 1.09 2479779 84 27350 2434566 1.11 2461916 85 26773 2419203 1.09 2445976 86 27641 2405053 1.14 2432694 87 26983 2388327 1.12 2415310 88 27954 2370635 1.17 2398589 89 27152 2357737 1.14 2384889 90 27360 2340530 1.16 2367890 91 26548 2330866 1.13 2357414 92 27335 2325589 1.16 2352924 93 27175 2311263 1.16 2338438