CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 145806 627400 18.86 773206 2 135564 596453 18.52 732017 3 127811 594848 17.69 722659 4 127515 577384 18.09 704899 5 123447 589245 17.32 712692 6 124594 577265 17.75 701859 7 123619 571972 17.77 695591 8 124605 574632 17.82 699237 9 124036 576175 17.71 700211 10 124525 583287 17.59 707812 11 126581 585174 17.78 711755 12 127629 594170 17.68 721799 13 128111 588757 17.87 716868 14 129596 592047 17.96 721643 15 128730 586785 17.99 715515 16 127845 586300 17.90 714145 17 127217 581420 17.95 708637 18 128763 587196 17.98 715959 19 128390 583649 18.03 712039 20 128360 584825 18.00 713185 21 128456 590149 17.88 718605 22 127615 591741 17.74 719356 23 128059 591218 17.80 719277 24 129196 595712 17.82 724908 25 129300 591288 17.94 720588 26 127620 592275 17.73 719895 27 128532 595812 17.74 724344 28 127503 589591 17.78 717094 29 128028 591830 17.79 719858 30 128369 594543 17.76 722912 31 128031 591273 17.80 719304 32 127694 592285 17.74 719979 33 129011 595571 17.80 724582 34 127966 595285 17.69 723251 35 128333 594107 17.76 722440 36 129123 597021 17.78 726144 37 129098 594894 17.83 723992 38 128569 593664 17.80 722233 39 127855 593067 17.73 720922 40 128546 594442 17.78 722988 41 127591 591119 17.75 718710 42 127863 594632 17.70 722495 43 128668 594048 17.80 722716 44 128108 594220 17.74 722328 45 128696 595828 17.76 724524 46 129421 595622 17.85 725043 47 129024 590743 17.93 719767 48 129426 594354 17.88 723780 49 128229 590509 17.84 718738 50 128474 592672 17.82 721146 51 128020 593492 17.74 721512 52 128128 593612 17.75 721740 53 128016 590138 17.83 718154 54 128355 593960 17.77 722315 55 127892 590969 17.79 718861 56 128787 593347 17.83 722134 57 128737 594047 17.81 722784 58 128069 592737 17.77 720806 59 128636 590795 17.88 719431 60 128733 592222 17.86 720955 61 128387 587721 17.93 716108 62 127695 592092 17.74 719787 63 127872 590777 17.79 718649 64 128335 590971 17.84 719306 65 128769 588534 17.95 717303 66 129055 592929 17.88 721984 67 128353 590471 17.86 718824 68 127634 590456 17.77 718090 69 128136 588698 17.88 716834 70 127891 588607 17.85 716498 71 126497 586098 17.75 712595 72 128373 587577 17.93 715950 73 127759 587561 17.86 715320 74 128201 596096 17.70 724297 75 128064 588365 17.88 716429 76 127466 586818 17.85 714284 77 127495 588221 17.81 715716 78 127851 591552 17.77 719403 79 127359 588861 17.78 716220 80 126254 586916 17.70 713170 81 126899 587024 17.77 713923 82 126443 587041 17.72 713484 83 127566 583397 17.94 710963 84 126755 588116 17.73 714871 85 126650 584425 17.81 711075 86 126727 589673 17.69 716400 87 127919 588406 17.86 716325 88 126801 586930 17.77 713731 89 127826 586868 17.89 714694 90 127782 589569 17.81 717351 91 127056 583486 17.88 710542 92 126591 590918 17.64 717509 93 125726 594004 17.47 719730 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 10801 1040177 1.03 1050978 2 10209 1051297 0.96 1061506 3 9993 1055380 0.94 1065373 4 9878 1044869 0.94 1054747 5 9994 1071477 0.92 1081471 6 9983 1061314 0.93 1071297 7 9672 1048352 0.91 1058024 8 9856 1059014 0.92 1068870 9 9947 1060277 0.93 1070224 10 10235 1062362 0.95 1072597 11 10330 1070068 0.96 1080398 12 10364 1074841 0.96 1085205 13 10526 1066137 0.98 1076663 14 10591 1068413 0.98 1079004 15 10643 1082165 0.97 1092808 16 10441 1080721 0.96 1091162 17 10432 1082080 0.95 1092512 18 10673 1078674 0.98 1089347 19 10427 1070010 0.97 1080437 20 11333 1083308 1.04 1094641 21 11059 1084921 1.01 1095980 22 11824 1084774 1.08 1096598 23 11058 1082558 1.01 1093616 24 11541 1088695 1.05 1100236 25 11532 1094087 1.04 1105619 26 11420 1093945 1.03 1105365 27 11571 1089067 1.05 1100638 28 11260 1087322 1.02 1098582 29 11389 1087232 1.04 1098621 30 11405 1092777 1.03 1104182 31 11383 1086557 1.04 1097940 32 11291 1089245 1.03 1100536 33 11484 1088443 1.04 1099927 34 11328 1089348 1.03 1100676 35 11311 1087586 1.03 1098897 36 11729 1094115 1.06 1105844 37 11546 1087307 1.05 1098853 38 11588 1093482 1.05 1105070 39 11671 1091061 1.06 1102732 40 11456 1085422 1.04 1096878 41 11538 1084177 1.05 1095715 42 11489 1091623 1.04 1103112 43 11536 1087479 1.05 1099015 44 11340 1090891 1.03 1102231 45 11398 1089237 1.04 1100635 46 11500 1092181 1.04 1103681 47 11545 1086953 1.05 1098498 48 11640 1099453 1.05 1111093 49 11444 1089757 1.04 1101201 50 12791 1089777 1.16 1102568 51 11627 1087367 1.06 1098994 52 11822 1083556 1.08 1095378 53 11764 1083401 1.07 1095165 54 11647 1091521 1.06 1103168 55 11689 1089781 1.06 1101470 56 11593 1089664 1.05 1101257 57 11698 1087857 1.06 1099555 58 11581 1088499 1.05 1100080 59 11673 1086215 1.06 1097888 60 11924 1089596 1.08 1101520 61 11712 1081127 1.07 1092839 62 11885 1089992 1.08 1101877 63 11651 1086327 1.06 1097978 64 12047 1083034 1.10 1095081 65 11878 1078621 1.09 1090499 66 11927 1086670 1.09 1098597 67 11909 1081269 1.09 1093178 68 12065 1088900 1.10 1100965 69 12638 1079779 1.16 1092417 70 11610 1078669 1.06 1090279 71 11607 1077218 1.07 1088825 72 12315 1082654 1.12 1094969 73 11741 1078351 1.08 1090092 74 11794 1084649 1.08 1096443 75 11761 1083138 1.07 1094899 76 11929 1079155 1.09 1091084 77 11842 1079829 1.08 1091671 78 12094 1083470 1.10 1095564 79 11785 1077148 1.08 1088933 80 11854 1079580 1.09 1091434 81 12310 1077319 1.13 1089629 82 12192 1077728 1.12 1089920 83 12393 1073450 1.14 1085843 84 12357 1076512 1.13 1088869 85 12381 1074071 1.14 1086452 86 12644 1074341 1.16 1086985 87 12629 1070283 1.17 1082912 88 12706 1074708 1.17 1087414 89 13247 1074860 1.22 1088107 90 13697 1082810 1.25 1096507 91 13630 1074797 1.25 1088427 92 14682 1079376 1.34 1094058 93 15328 1075816 1.40 1091144 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 43654 3933493 1.10 3977147 2 41699 4076391 1.01 4118090 3 40109 4219972 0.94 4260081 4 40073 4196287 0.95 4236360 5 39797 4278659 0.92 4318456 6 39367 4245642 0.92 4285009 7 38534 4226065 0.90 4264599 8 39301 4242156 0.92 4281457 9 39930 4218557 0.94 4258487 10 40420 4214262 0.95 4254682 11 41084 4240738 0.96 4281822 12 41721 4276117 0.97 4317838 13 41651 4248377 0.97 4290028 14 42210 4281549 0.98 4323759 15 41931 4288820 0.97 4330751 16 41782 4284981 0.97 4326763 17 41636 4264036 0.97 4305672 18 41840 4274363 0.97 4316203 19 42192 4272832 0.98 4315024 20 43706 4259507 1.02 4303213 21 43895 4268994 1.02 4312889 22 45842 4262822 1.06 4308664 23 43520 4268479 1.01 4311999 24 44544 4293510 1.03 4338054 25 44268 4273252 1.03 4317520 26 44381 4268006 1.03 4312387 27 44818 4273220 1.04 4318038 28 43926 4263258 1.02 4307184 29 44144 4265691 1.02 4309835 30 44380 4282264 1.03 4326644 31 43757 4262188 1.02 4305945 32 44277 4277601 1.02 4321878 33 44693 4288208 1.03 4332901 34 44544 4278160 1.03 4322704 35 44701 4281031 1.03 4325732 36 44700 4297180 1.03 4341880 37 44582 4272163 1.03 4316745 38 44480 4279773 1.03 4324253 39 44524 4274598 1.03 4319122 40 44631 4272801 1.03 4317432 41 44272 4274130 1.03 4318402 42 44837 4279675 1.04 4324512 43 44303 4264625 1.03 4308928 44 44576 4272977 1.03 4317553 45 44461 4276091 1.03 4320552 46 44826 4273790 1.04 4318616 47 44951 4268370 1.04 4313321 48 45179 4289407 1.04 4334586 49 44461 4261814 1.03 4306275 50 49296 4264863 1.14 4314159 51 45095 4270194 1.05 4315289 52 45211 4263799 1.05 4309010 53 45434 4271253 1.05 4316687 54 45531 4293866 1.05 4339397 55 45151 4265408 1.05 4310559 56 45360 4273635 1.05 4318995 57 45414 4275962 1.05 4321376 58 45279 4273067 1.05 4318346 59 45979 4258940 1.07 4304919 60 46031 4268981 1.07 4315012 61 45418 4253612 1.06 4299030 62 45884 4266240 1.06 4312124 63 45618 4261472 1.06 4307090 64 45337 4255624 1.05 4300961 65 46309 4262504 1.07 4308813 66 46159 4270626 1.07 4316785 67 46088 4254883 1.07 4300971 68 46616 4262193 1.08 4308809 69 48734 4249298 1.13 4298032 70 45906 4254664 1.07 4300570 71 45464 4252498 1.06 4297962 72 47942 4265272 1.11 4313214 73 46193 4250992 1.07 4297185 74 46331 4263479 1.08 4309810 75 45863 4258654 1.07 4304517 76 46201 4255280 1.07 4301481 77 46459 4241500 1.08 4287959 78 46965 4259170 1.09 4306135 79 47008 4232877 1.10 4279885 80 46965 4233949 1.10 4280914 81 47257 4228571 1.11 4275828 82 47968 4233569 1.12 4281537 83 47475 4222407 1.11 4269882 84 48266 4241092 1.13 4289358 85 48104 4218278 1.13 4266382 86 48731 4214963 1.14 4263694 87 48807 4227840 1.14 4276647 88 49510 4225986 1.16 4275496 89 51170 4229749 1.20 4280919 90 52601 4261482 1.22 4314083 91 53131 4242911 1.24 4296042 92 53803 4252846 1.25 4306649 93 56154 4240389 1.31 4296543 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 432536 634343 40.54 1066879 2 267074 544942 32.89 812016 3 229630 577972 28.43 807602 4 214865 615739 25.87 830604 5 175133 609704 22.31 784837 6 157041 588768 21.06 745809 7 143192 571552 20.03 714744 8 135248 568462 19.22 703710 9 128841 562874 18.63 691715 10 125533 557660 18.37 683193 11 125046 552898 18.44 677944 12 124443 549951 18.45 674394 13 123823 548283 18.42 672106 14 124018 546933 18.48 670951 15 124913 546177 18.61 671090 16 123826 546216 18.48 670042 17 125935 546044 18.74 671979 18 124646 546197 18.58 670843 19 124314 546202 18.54 670516 20 125539 548259 18.63 673798 21 124657 549433 18.49 674090 22 124855 549595 18.51 674450 23 125781 548434 18.66 674215 24 124780 551124 18.46 675904 25 124833 549112 18.52 673945 26 125612 549788 18.60 675400 27 125133 549895 18.54 675028 28 124154 547314 18.49 671468 29 123586 548417 18.39 672003 30 124345 545249 18.57 669594 31 123756 545574 18.49 669330 32 123306 545707 18.43 669013 33 122432 545521 18.33 667953 34 122439 543258 18.39 665697 35 121971 542547 18.35 664518 36 121520 542078 18.31 663598 37 121370 541815 18.30 663185 38 120898 539628 18.30 660526 39 120217 536827 18.30 657044 40 120586 535374 18.38 655960 41 120936 535100 18.43 656036 42 119872 533769 18.34 653641 43 119365 531032 18.35 650397 44 118989 530142 18.33 649131 45 118442 528364 18.31 646806 46 117218 527020 18.19 644238 47 118378 525724 18.38 644102 48 117828 525154 18.33 642982 49 117298 521439 18.36 638737 50 117087 519292 18.40 636379 51 116284 517058 18.36 633342 52 116164 514142 18.43 630306 53 115687 512595 18.41 628282 54 114110 512180 18.22 626290 55 114292 509282 18.33 623574 56 113905 508211 18.31 622116 57 113150 505333 18.29 618483 58 112396 503174 18.26 615570 59 112295 499547 18.35 611842 60 111416 496635 18.32 608051 61 111133 495374 18.32 606507 62 110656 490983 18.39 601639 63 109982 490280 18.32 600262 64 109232 487825 18.30 597057 65 109353 484032 18.43 593385 66 108424 482623 18.34 591047 67 107924 480877 18.33 588801 68 107106 476245 18.36 583351 69 106292 473409 18.34 579701 70 106101 473670 18.30 579771 71 104873 470439 18.23 575312 72 104579 466421 18.32 571000 73 104169 463699 18.34 567868 74 103676 462816 18.30 566492 75 102764 459378 18.28 562142 76 102760 455793 18.40 558553 77 101668 454057 18.29 555725 78 100973 451295 18.28 552268 79 100384 448243 18.30 548627 80 99328 444628 18.26 543956 81 98863 442132 18.27 540995 82 98364 437645 18.35 536009 83 97457 436547 18.25 534004 84 96206 432397 18.20 528603 85 96172 430501 18.26 526673 86 95382 428084 18.22 523466 87 94816 424348 18.26 519164 88 94048 420191 18.29 514239 89 93813 419655 18.27 513468 90 93067 415005 18.32 508072 91 92062 414230 18.18 506292 92 91829 412497 18.21 504326 93 91729 408285 18.35 500014 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 538150 889060 37.71 1427210 2 435481 1015172 30.02 1450653 3 192570 883211 17.90 1075781 4 146250 977116 13.02 1123366 5 105480 1034666 9.25 1140146 6 64904 1006556 6.06 1071460 7 45843 994119 4.41 1039962 8 29944 980293 2.96 1010237 9 22715 990396 2.24 1013111 10 17923 988904 1.78 1006827 11 15467 986023 1.54 1001490 12 13406 982883 1.35 996289 13 12281 980234 1.24 992515 14 12010 978596 1.21 990606 15 11332 979850 1.14 991182 16 11340 977998 1.15 989338 17 11222 978122 1.13 989344 18 10856 979638 1.10 990494 19 10509 981638 1.06 992147 20 10446 980111 1.05 990557 21 10334 979925 1.04 990259 22 11508 982324 1.16 993832 23 10899 982305 1.10 993204 24 10330 980565 1.04 990895 25 10600 977858 1.07 988458 26 10333 979171 1.04 989504 27 10532 976592 1.07 987124 28 10208 977339 1.03 987547 29 10138 977040 1.03 987178 30 10418 975186 1.06 985604 31 10370 976338 1.05 986708 32 10348 974759 1.05 985107 33 10384 972540 1.06 982924 34 9950 971199 1.01 981149 35 10147 970833 1.03 980980 36 10086 967513 1.03 977599 37 9864 966159 1.01 976023 38 9883 962941 1.02 972824 39 9813 961419 1.01 971232 40 10008 959575 1.03 969583 41 9706 957127 1.00 966833 42 9829 957002 1.02 966831 43 9779 952782 1.02 962561 44 9847 949841 1.03 959688 45 9639 949268 1.01 958907 46 9833 942012 1.03 951845 47 9873 941772 1.04 951645 48 9956 938905 1.05 948861 49 10002 933397 1.06 943399 50 10020 931226 1.06 941246 51 9905 926827 1.06 936732 52 9928 922066 1.07 931994 53 9971 918962 1.07 928933 54 9777 914801 1.06 924578 55 10046 909942 1.09 919988 56 9886 906544 1.08 916430 57 9603 906447 1.05 916050 58 9378 899219 1.03 908597 59 9473 894801 1.05 904274 60 9556 890882 1.06 900438 61 9302 886726 1.04 896028 62 9678 880686 1.09 890364 63 9386 877611 1.06 886997 64 9536 872420 1.08 881956 65 9583 867840 1.09 877423 66 9585 864372 1.10 873957 67 9499 859858 1.09 869357 68 9388 856774 1.08 866162 69 9546 850143 1.11 859689 70 9203 843665 1.08 852868 71 9467 842193 1.11 851660 72 9395 836606 1.11 846001 73 9707 831668 1.15 841375 74 9359 827622 1.12 836981 75 9210 822364 1.11 831574 76 9390 816043 1.14 825433 77 9457 812953 1.15 822410 78 9304 806257 1.14 815561 79 9195 800488 1.14 809683 80 9491 794599 1.18 804090 81 9334 789154 1.17 798488 82 9921 782698 1.25 792619 83 9145 780671 1.16 789816 84 9230 771611 1.18 780841 85 9258 768256 1.19 777514 86 9070 761407 1.18 770477 87 9170 755251 1.20 764421 88 9543 751664 1.25 761207 89 9171 745681 1.21 754852 90 9206 741024 1.23 750230 91 8909 739374 1.19 748283 92 9348 736021 1.25 745369 93 9267 730875 1.25 740142 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 1853355 3273232 36.15 5126587 2 1418651 3454129 29.11 4872780 3 1127639 3644811 23.63 4772450 4 830372 3745784 18.15 4576156 5 523927 3811496 12.08 4335423 6 348926 3816456 8.38 4165382 7 234259 3806786 5.80 4041045 8 157339 3808736 3.97 3966075 9 114538 3856013 2.88 3970551 10 84540 3894801 2.12 3979341 11 68590 3934336 1.71 4002926 12 59156 3953009 1.47 4012165 13 52347 3973210 1.30 4025557 14 50285 3976840 1.25 4027125 15 47536 3982841 1.18 4030377 16 47134 3977685 1.17 4024819 17 45547 3974407 1.13 4019954 18 45611 3969393 1.14 4015004 19 44281 3969024 1.10 4013305 20 44132 3964415 1.10 4008547 21 43740 3964769 1.09 4008509 22 44806 3962309 1.12 4007115 23 45462 3960626 1.13 4006088 24 44306 3962634 1.11 4006940 25 44539 3949834 1.12 3994373 26 42949 3949542 1.08 3992491 27 43712 3934273 1.10 3977985 28 42352 3930596 1.07 3972948 29 42080 3926030 1.06 3968110 30 42885 3919245 1.08 3962130 31 42270 3909306 1.07 3951576 32 42580 3908634 1.08 3951214 33 42104 3900709 1.07 3942813 34 40717 3899240 1.03 3939957 35 41155 3886407 1.05 3927562 36 40642 3877216 1.04 3917858 37 40014 3865352 1.02 3905366 38 40236 3853986 1.03 3894222 39 40354 3842250 1.04 3882604 40 41361 3830765 1.07 3872126 41 40018 3826041 1.04 3866059 42 39921 3817160 1.04 3857081 43 40730 3811372 1.06 3852102 44 40534 3795144 1.06 3835678 45 39411 3784639 1.03 3824050 46 39838 3768701 1.05 3808539 47 40346 3752234 1.06 3792580 48 39857 3737546 1.06 3777403 49 40546 3721613 1.08 3762159 50 40363 3709679 1.08 3750042 51 40315 3696099 1.08 3736414 52 39690 3683252 1.07 3722942 53 39971 3672855 1.08 3712826 54 39440 3657638 1.07 3697078 55 41115 3638782 1.12 3679897 56 39749 3625798 1.08 3665547 57 39010 3613794 1.07 3652804 58 38686 3595895 1.06 3634581 59 38800 3578048 1.07 3616848 60 38725 3561697 1.08 3600422 61 38436 3544946 1.07 3583382 62 39510 3527739 1.11 3567249 63 38281 3511104 1.08 3549385 64 38442 3492343 1.09 3530785 65 38765 3469807 1.10 3508572 66 38783 3452043 1.11 3490826 67 37799 3434003 1.09 3471802 68 37908 3422699 1.10 3460607 69 38071 3397790 1.11 3435861 70 38253 3382314 1.12 3420567 71 38318 3363639 1.13 3401957 72 38493 3345865 1.14 3384358 73 38797 3326851 1.15 3365648 74 37789 3312085 1.13 3349874 75 37571 3290432 1.13 3328003 76 37966 3270109 1.15 3308075 77 38278 3249336 1.16 3287614 78 37339 3233805 1.14 3271144 79 37376 3211689 1.15 3249065 80 37732 3191203 1.17 3228935 81 37348 3169396 1.16 3206744 82 39766 3143491 1.25 3183257 83 37131 3129863 1.17 3166994 84 37094 3106446 1.18 3143540 85 36837 3086720 1.18 3123557 86 36619 3068421 1.18 3105040 87 36443 3045809 1.18 3082252 88 37312 3018812 1.22 3056124 89 36809 3000541 1.21 3037350 90 36989 2979519 1.23 3016508 91 35421 2965606 1.18 3001027 92 36783 2956946 1.23 2993729 93 36719 2937300 1.23 2974019