*** Bismark methylation extractor version v0.19.0 *** Setting option '--no_overlap' since this is (normally) the right thing to do for paired-end data Core usage currently set to more than 20 threads. Let's see how this goes... (set value: 28) Summarising Bismark methylation extractor parameters: =============================================================== Bismark paired-end SAM format specified (default) Number of cores to be used: 28 Output path specified as: /gscratch/srlab/strigg/analyses/20190415_10K/ Summarising bedGraph parameters: =============================================================== Generating additional output in bedGraph and coverage format bedGraph format: coverage format: Using a cutoff of 1 read(s) to report cytosine positions Reporting and sorting cytosine methylation information in CpG context only (default) The bedGraph UNIX sort command will use the following memory setting: '2G'. Temporary directory used for sorting is the output directory Checking file >>/gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... ...passed! Writing result file containing methylation information for C in CpG context from the original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OT_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CpG context from the complementary to original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CpG_CTOT_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CpG context from the complementary to original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CpG_CTOB_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CpG context from the original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OB_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHG context from the original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OT_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHG context from the complementary to original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHG_CTOT_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHG context from the complementary to original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHG_CTOB_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHG context from the original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OB_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHH context from the original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OT_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHH context from the complementary to original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHH_CTOT_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHH context from the complementary to original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHH_CTOB_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHH context from the original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OB_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bam skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold1__77_contigs__length_89643857 LN:89643857 skipping SAM header line: @SQ SN:PGA_scaffold2__36_contigs__length_69596280 LN:69596280 skipping SAM 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SAM header line: @SQ SN:PGA_scaffold12030__1_contigs__length_12026 LN:12026 skipping SAM header line: @SQ SN:PGA_scaffold12061__1_contigs__length_18105 LN:18105 skipping SAM header line: @SQ SN:PGA_scaffold12070__1_contigs__length_11282 LN:11282 skipping SAM header line: @SQ SN:PGA_scaffold12091__1_contigs__length_12308 LN:12308 skipping SAM header line: @SQ SN:PGA_scaffold12112__1_contigs__length_16726 LN:16726 skipping SAM header line: @SQ SN:PGA_scaffold12184__1_contigs__length_13265 LN:13265 skipping SAM header line: @SQ SN:PGA_scaffold12194__1_contigs__length_10252 LN:10252 skipping SAM header line: @SQ SN:PGA_scaffold12208__1_contigs__length_13978 LN:13978 skipping SAM header line: @SQ SN:PGA_scaffold12234__1_contigs__length_14065 LN:14065 skipping SAM header line: @SQ SN:PGA_scaffold12241__1_contigs__length_10887 LN:10887 skipping SAM header line: @SQ SN:PGA_scaffold12257__1_contigs__length_13168 LN:13168 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold12391__1_contigs__length_15499 LN:15499 skipping SAM header line: @SQ SN:PGA_scaffold12397__1_contigs__length_17611 LN:17611 skipping SAM header line: @SQ SN:PGA_scaffold12410__1_contigs__length_15296 LN:15296 skipping SAM header line: @SQ SN:PGA_scaffold12421__1_contigs__length_13684 LN:13684 skipping SAM header line: @SQ SN:PGA_scaffold12433__1_contigs__length_10726 LN:10726 skipping SAM header line: @SQ SN:PGA_scaffold12441__1_contigs__length_12375 LN:12375 skipping SAM header line: @SQ SN:PGA_scaffold12467__1_contigs__length_11844 LN:11844 skipping SAM header line: @SQ SN:PGA_scaffold12490__1_contigs__length_13304 LN:13304 skipping SAM header line: @SQ SN:PGA_scaffold12514__1_contigs__length_10213 LN:10213 skipping SAM header line: @SQ SN:PGA_scaffold12559__1_contigs__length_11008 LN:11008 skipping SAM header line: @SQ SN:PGA_scaffold12637__1_contigs__length_10930 LN:10930 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold13092__1_contigs__length_10152 LN:10152 skipping SAM header line: @SQ SN:PGA_scaffold13117__1_contigs__length_15835 LN:15835 skipping SAM header line: @SQ SN:PGA_scaffold13118__1_contigs__length_10875 LN:10875 skipping SAM header line: @SQ SN:PGA_scaffold13141__1_contigs__length_11512 LN:11512 skipping SAM header line: @SQ SN:PGA_scaffold13187__1_contigs__length_13084 LN:13084 skipping SAM header line: @SQ SN:PGA_scaffold13188__1_contigs__length_11040 LN:11040 skipping SAM header line: @SQ SN:PGA_scaffold13195__1_contigs__length_17635 LN:17635 skipping SAM header line: @SQ SN:PGA_scaffold13197__1_contigs__length_12344 LN:12344 skipping SAM header line: @SQ SN:PGA_scaffold13203__1_contigs__length_12532 LN:12532 skipping SAM header line: @SQ SN:PGA_scaffold13207__1_contigs__length_30412 LN:30412 skipping SAM header line: @SQ SN:PGA_scaffold13208__1_contigs__length_10601 LN:10601 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold13469__1_contigs__length_10308 LN:10308 skipping SAM header line: @SQ SN:PGA_scaffold13532__1_contigs__length_10730 LN:10730 skipping SAM header line: @SQ SN:PGA_scaffold13558__1_contigs__length_11671 LN:11671 skipping SAM header line: @SQ SN:PGA_scaffold13645__1_contigs__length_10244 LN:10244 skipping SAM header line: @SQ SN:PGA_scaffold13688__1_contigs__length_11119 LN:11119 skipping SAM header line: @SQ SN:PGA_scaffold13707__1_contigs__length_14655 LN:14655 skipping SAM header line: @SQ SN:PGA_scaffold13738__1_contigs__length_12266 LN:12266 skipping SAM header line: @SQ SN:PGA_scaffold13755__1_contigs__length_12856 LN:12856 skipping SAM header line: @SQ SN:PGA_scaffold13979__1_contigs__length_13228 LN:13228 skipping SAM header line: @SQ SN:PGA_scaffold13996__1_contigs__length_13649 LN:13649 skipping SAM header line: @SQ SN:PGA_scaffold14144__1_contigs__length_19033 LN:19033 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold14800__1_contigs__length_12676 LN:12676 skipping SAM header line: @SQ SN:PGA_scaffold14807__1_contigs__length_12630 LN:12630 skipping SAM header line: @SQ SN:PGA_scaffold14847__1_contigs__length_14210 LN:14210 skipping SAM header line: @SQ SN:PGA_scaffold14887__1_contigs__length_13012 LN:13012 skipping SAM header line: @SQ SN:PGA_scaffold15388__1_contigs__length_10314 LN:10314 skipping SAM header line: @SQ SN:PGA_scaffold15436__1_contigs__length_15188 LN:15188 skipping SAM header line: @SQ SN:PGA_scaffold15541__1_contigs__length_16157 LN:16157 skipping SAM header line: @SQ SN:PGA_scaffold15576__1_contigs__length_11824 LN:11824 skipping SAM header line: @SQ SN:PGA_scaffold15642__1_contigs__length_10124 LN:10124 skipping SAM header line: @SQ SN:PGA_scaffold15672__1_contigs__length_15260 LN:15260 skipping SAM header line: @SQ SN:PGA_scaffold15737__1_contigs__length_15749 LN:15749 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold16254__1_contigs__length_12274 LN:12274 skipping SAM header line: @SQ SN:PGA_scaffold16257__1_contigs__length_15529 LN:15529 skipping SAM header line: @SQ SN:PGA_scaffold16260__1_contigs__length_11250 LN:11250 skipping SAM header line: @SQ SN:PGA_scaffold16268__1_contigs__length_10506 LN:10506 skipping SAM header line: @SQ SN:PGA_scaffold16294__1_contigs__length_10224 LN:10224 skipping SAM header line: @SQ SN:PGA_scaffold16345__1_contigs__length_11791 LN:11791 skipping SAM header line: @SQ SN:PGA_scaffold16375__1_contigs__length_10589 LN:10589 skipping SAM header line: @SQ SN:PGA_scaffold16400__1_contigs__length_14897 LN:14897 skipping SAM header line: @SQ SN:PGA_scaffold16426__1_contigs__length_14354 LN:14354 skipping SAM header line: @SQ SN:PGA_scaffold16478__1_contigs__length_13482 LN:13482 skipping SAM header line: @SQ SN:PGA_scaffold16498__1_contigs__length_12832 LN:12832 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold20077__1_contigs__length_11037 LN:11037 skipping SAM header line: @SQ SN:PGA_scaffold20078__1_contigs__length_11039 LN:11039 skipping SAM header line: @SQ SN:PGA_scaffold20086__1_contigs__length_11969 LN:11969 skipping SAM header line: @SQ SN:PGA_scaffold20101__1_contigs__length_11603 LN:11603 skipping SAM header line: @SQ SN:PGA_scaffold20102__1_contigs__length_11145 LN:11145 skipping SAM header line: @SQ SN:PGA_scaffold20121__1_contigs__length_10485 LN:10485 skipping SAM header line: @SQ SN:PGA_scaffold20129__1_contigs__length_10144 LN:10144 skipping SAM header line: @SQ SN:PGA_scaffold20134__1_contigs__length_11017 LN:11017 skipping SAM header line: @SQ SN:PGA_scaffold20135__1_contigs__length_11393 LN:11393 skipping SAM header line: @SQ SN:PGA_scaffold20140__1_contigs__length_10103 LN:10103 skipping SAM header line: @SQ SN:PGA_scaffold20153__1_contigs__length_10512 LN:10512 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold20468__1_contigs__length_14662 LN:14662 skipping SAM header line: @SQ SN:PGA_scaffold20469__1_contigs__length_13589 LN:13589 skipping SAM header line: @SQ SN:PGA_scaffold20479__1_contigs__length_25763 LN:25763 skipping SAM header line: @SQ SN:PGA_scaffold20481__1_contigs__length_15084 LN:15084 skipping SAM header line: @SQ SN:PGA_scaffold20482__1_contigs__length_10245 LN:10245 skipping SAM header line: @SQ SN:PGA_scaffold20484__1_contigs__length_10811 LN:10811 skipping SAM header line: @SQ SN:PGA_scaffold20485__1_contigs__length_13306 LN:13306 skipping SAM header line: @SQ SN:PGA_scaffold20487__1_contigs__length_31060 LN:31060 skipping SAM header line: @SQ SN:PGA_scaffold20490__1_contigs__length_34645 LN:34645 skipping SAM header line: @SQ SN:PGA_scaffold20491__1_contigs__length_21874 LN:21874 skipping SAM header line: @SQ SN:PGA_scaffold20493__1_contigs__length_13784 LN:13784 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold20515__1_contigs__length_14811 LN:14811 skipping SAM header line: @SQ SN:PGA_scaffold20516__1_contigs__length_24722 LN:24722 skipping SAM header line: @SQ SN:PGA_scaffold20517__1_contigs__length_19189 LN:19189 skipping SAM header line: @SQ SN:PGA_scaffold20518__1_contigs__length_14433 LN:14433 skipping SAM header line: @SQ SN:PGA_scaffold20520__1_contigs__length_10769 LN:10769 skipping SAM header line: @SQ SN:PGA_scaffold20534__1_contigs__length_13634 LN:13634 skipping SAM header line: @SQ SN:PGA_scaffold20545__1_contigs__length_15950 LN:15950 skipping SAM header line: @SQ SN:PGA_scaffold20550__1_contigs__length_21497 LN:21497 skipping SAM header line: @SQ SN:PGA_scaffold20556__1_contigs__length_17954 LN:17954 skipping SAM header line: @SQ SN:PGA_scaffold20567__1_contigs__length_13755 LN:13755 skipping SAM header line: @SQ SN:PGA_scaffold20588__1_contigs__length_18140 LN:18140 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold20736__1_contigs__length_12741 LN:12741 skipping SAM header line: @SQ SN:PGA_scaffold20757__1_contigs__length_11844 LN:11844 skipping SAM header line: @SQ SN:PGA_scaffold20779__1_contigs__length_20010 LN:20010 skipping SAM header line: @SQ SN:PGA_scaffold20791__1_contigs__length_12581 LN:12581 skipping SAM header line: @SQ SN:PGA_scaffold20816__1_contigs__length_13800 LN:13800 skipping SAM header line: @SQ SN:PGA_scaffold20825__1_contigs__length_15732 LN:15732 skipping SAM header line: @SQ SN:PGA_scaffold20833__1_contigs__length_13074 LN:13074 skipping SAM header line: @SQ SN:PGA_scaffold20895__1_contigs__length_10872 LN:10872 skipping SAM header line: @SQ SN:PGA_scaffold20933__1_contigs__length_10869 LN:10869 skipping SAM header line: @SQ SN:PGA_scaffold20957__1_contigs__length_29397 LN:29397 skipping SAM header line: @SQ SN:PGA_scaffold21015__1_contigs__length_12754 LN:12754 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold25141__1_contigs__length_21688 LN:21688 skipping SAM header line: @SQ SN:PGA_scaffold25168__1_contigs__length_10439 LN:10439 skipping SAM header line: @SQ SN:PGA_scaffold25252__1_contigs__length_15238 LN:15238 skipping SAM header line: @SQ SN:PGA_scaffold25814__1_contigs__length_17034 LN:17034 skipping SAM header line: @SQ SN:PGA_scaffold25844__1_contigs__length_19172 LN:19172 skipping SAM header line: @SQ SN:PGA_scaffold25961__1_contigs__length_12420 LN:12420 skipping SAM header line: @SQ SN:PGA_scaffold26126__1_contigs__length_17550 LN:17550 skipping SAM header line: @SQ SN:PGA_scaffold26169__1_contigs__length_17578 LN:17578 skipping SAM header line: @SQ SN:PGA_scaffold26278__1_contigs__length_11495 LN:11495 skipping SAM header line: @SQ SN:PGA_scaffold26392__1_contigs__length_16096 LN:16096 skipping SAM header line: @SQ SN:PGA_scaffold26405__1_contigs__length_34931 LN:34931 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold26840__1_contigs__length_11440 LN:11440 skipping SAM header line: @SQ SN:PGA_scaffold26882__1_contigs__length_12558 LN:12558 skipping SAM header line: @SQ SN:PGA_scaffold26901__1_contigs__length_11873 LN:11873 skipping SAM header line: @SQ SN:PGA_scaffold26912__1_contigs__length_10127 LN:10127 skipping SAM header line: @SQ SN:PGA_scaffold26988__1_contigs__length_14841 LN:14841 skipping SAM header line: @SQ SN:PGA_scaffold26989__1_contigs__length_10840 LN:10840 skipping SAM header line: @SQ SN:PGA_scaffold26990__1_contigs__length_16175 LN:16175 skipping SAM header line: @SQ SN:PGA_scaffold27008__1_contigs__length_10958 LN:10958 skipping SAM header line: @SQ SN:PGA_scaffold27028__1_contigs__length_34525 LN:34525 skipping SAM header line: @SQ SN:PGA_scaffold27038__1_contigs__length_14041 LN:14041 skipping SAM header line: @SQ SN:PGA_scaffold27088__1_contigs__length_10972 LN:10972 skipping SAM header line: @SQ SN:PGA_scaffold27092__1_contigs__length_12376 LN:12376 skipping SAM header line: @SQ SN:PGA_scaffold27107__1_contigs__length_16817 LN:16817 skipping SAM header line: @SQ SN:PGA_scaffold27122__1_contigs__length_12025 LN:12025 skipping SAM header line: @SQ SN:PGA_scaffold27202__1_contigs__length_12163 LN:12163 skipping SAM header line: @SQ SN:PGA_scaffold27212__1_contigs__length_13409 LN:13409 skipping SAM header line: @SQ SN:PGA_scaffold27234__1_contigs__length_10459 LN:10459 skipping SAM header line: @SQ SN:PGA_scaffold27243__1_contigs__length_19010 LN:19010 skipping SAM header line: @SQ SN:PGA_scaffold27246__1_contigs__length_17166 LN:17166 skipping SAM header line: @SQ SN:PGA_scaffold27249__1_contigs__length_10707 LN:10707 skipping SAM header line: @SQ SN:PGA_scaffold27253__1_contigs__length_24662 LN:24662 skipping SAM header line: @SQ SN:PGA_scaffold27312__1_contigs__length_17657 LN:17657 skipping SAM header line: @SQ SN:PGA_scaffold27313__1_contigs__length_15499 LN:15499 skipping SAM header line: @SQ SN:PGA_scaffold27335__1_contigs__length_13473 LN:13473 skipping SAM header line: @SQ SN:PGA_scaffold27340__1_contigs__length_19803 LN:19803 skipping SAM header line: @SQ SN:PGA_scaffold27350__1_contigs__length_18667 LN:18667 skipping SAM header line: @SQ SN:PGA_scaffold27352__1_contigs__length_12961 LN:12961 skipping SAM header line: @SQ SN:PGA_scaffold27353__1_contigs__length_14643 LN:14643 skipping SAM header line: @SQ SN:PGA_scaffold27403__1_contigs__length_12030 LN:12030 skipping SAM header line: @SQ SN:PGA_scaffold27404__1_contigs__length_20937 LN:20937 skipping SAM header line: @SQ SN:PGA_scaffold27481__1_contigs__length_14263 LN:14263 skipping SAM header line: @SQ SN:PGA_scaffold27483__1_contigs__length_10628 LN:10628 skipping SAM header line: @SQ SN:PGA_scaffold27494__1_contigs__length_10495 LN:10495 skipping SAM header line: @SQ SN:PGA_scaffold27497__1_contigs__length_23073 LN:23073 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold27910__1_contigs__length_19488 LN:19488 skipping SAM header line: @SQ SN:PGA_scaffold27921__1_contigs__length_13083 LN:13083 skipping SAM header line: @SQ SN:PGA_scaffold27923__1_contigs__length_18739 LN:18739 skipping SAM header line: @SQ SN:PGA_scaffold27930__1_contigs__length_22482 LN:22482 skipping SAM header line: @SQ SN:PGA_scaffold27940__1_contigs__length_11740 LN:11740 skipping SAM header line: @SQ SN:PGA_scaffold27951__1_contigs__length_15524 LN:15524 skipping SAM header line: @SQ SN:PGA_scaffold27959__1_contigs__length_12682 LN:12682 skipping SAM header line: @SQ SN:PGA_scaffold27962__1_contigs__length_11184 LN:11184 skipping SAM header line: @SQ SN:PGA_scaffold27965__1_contigs__length_14649 LN:14649 skipping SAM header line: @SQ SN:PGA_scaffold27976__1_contigs__length_11135 LN:11135 skipping SAM header line: @SQ SN:PGA_scaffold27986__1_contigs__length_11083 LN:11083 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold28156__1_contigs__length_20680 LN:20680 skipping SAM header line: @SQ SN:PGA_scaffold28162__1_contigs__length_16350 LN:16350 skipping SAM header line: @SQ SN:PGA_scaffold28163__1_contigs__length_19261 LN:19261 skipping SAM header line: @SQ SN:PGA_scaffold28168__1_contigs__length_18374 LN:18374 skipping SAM header line: @SQ SN:PGA_scaffold28183__1_contigs__length_12274 LN:12274 skipping SAM header line: @SQ SN:PGA_scaffold28185__1_contigs__length_12236 LN:12236 skipping SAM header line: @SQ SN:PGA_scaffold28186__1_contigs__length_14111 LN:14111 skipping SAM header line: @SQ SN:PGA_scaffold28207__1_contigs__length_12422 LN:12422 skipping SAM header line: @SQ SN:PGA_scaffold28208__1_contigs__length_11900 LN:11900 skipping SAM header line: @SQ SN:PGA_scaffold28235__1_contigs__length_10592 LN:10592 skipping SAM header line: @SQ SN:PGA_scaffold28236__1_contigs__length_14126 LN:14126 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold28362__1_contigs__length_10141 LN:10141 skipping SAM header line: @SQ SN:PGA_scaffold28364__1_contigs__length_10827 LN:10827 skipping SAM header line: @SQ SN:PGA_scaffold28378__1_contigs__length_10938 LN:10938 skipping SAM header line: @SQ SN:PGA_scaffold28381__1_contigs__length_13393 LN:13393 skipping SAM header line: @SQ SN:PGA_scaffold28388__1_contigs__length_11357 LN:11357 skipping SAM header line: @SQ SN:PGA_scaffold28396__1_contigs__length_20169 LN:20169 skipping SAM header line: @SQ SN:PGA_scaffold28398__1_contigs__length_10439 LN:10439 skipping SAM header line: @SQ SN:PGA_scaffold28403__1_contigs__length_12940 LN:12940 skipping SAM header line: @SQ SN:PGA_scaffold28415__1_contigs__length_10710 LN:10710 skipping SAM header line: @SQ SN:PGA_scaffold28422__1_contigs__length_13599 LN:13599 skipping SAM header line: @SQ SN:PGA_scaffold28437__1_contigs__length_10341 LN:10341 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold28783__1_contigs__length_14046 LN:14046 skipping SAM header line: @SQ SN:PGA_scaffold28792__1_contigs__length_19581 LN:19581 skipping SAM header line: @SQ SN:PGA_scaffold28793__1_contigs__length_19136 LN:19136 skipping SAM header line: @SQ SN:PGA_scaffold28794__1_contigs__length_16056 LN:16056 skipping SAM header line: @SQ SN:PGA_scaffold28803__1_contigs__length_20465 LN:20465 skipping SAM header line: @SQ SN:PGA_scaffold28811__1_contigs__length_17988 LN:17988 skipping SAM header line: @SQ SN:PGA_scaffold28817__1_contigs__length_11506 LN:11506 skipping SAM header line: @SQ SN:PGA_scaffold28822__1_contigs__length_13231 LN:13231 skipping SAM header line: @SQ SN:PGA_scaffold28828__1_contigs__length_10261 LN:10261 skipping SAM header line: @SQ SN:PGA_scaffold28834__1_contigs__length_10983 LN:10983 skipping SAM header line: @SQ SN:PGA_scaffold28844__1_contigs__length_11895 LN:11895 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold28904__1_contigs__length_22030 LN:22030 skipping SAM header line: @SQ SN:PGA_scaffold28909__1_contigs__length_20510 LN:20510 skipping SAM header line: @SQ SN:PGA_scaffold28917__1_contigs__length_14276 LN:14276 skipping SAM header line: @SQ SN:PGA_scaffold28918__1_contigs__length_20669 LN:20669 skipping SAM header line: @SQ SN:PGA_scaffold28919__1_contigs__length_13919 LN:13919 skipping SAM header line: @SQ SN:PGA_scaffold28920__1_contigs__length_13014 LN:13014 skipping SAM header line: @SQ SN:PGA_scaffold28922__1_contigs__length_16223 LN:16223 skipping SAM header line: @SQ SN:PGA_scaffold28929__1_contigs__length_16452 LN:16452 skipping SAM header line: @SQ SN:PGA_scaffold28935__1_contigs__length_11580 LN:11580 skipping SAM header line: @SQ SN:PGA_scaffold28940__1_contigs__length_14602 LN:14602 skipping SAM header line: @SQ SN:PGA_scaffold28976__1_contigs__length_13546 LN:13546 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold29090__1_contigs__length_12280 LN:12280 skipping SAM header line: @SQ SN:PGA_scaffold29093__1_contigs__length_10726 LN:10726 skipping SAM header line: @SQ SN:PGA_scaffold29097__1_contigs__length_14145 LN:14145 skipping SAM header line: @SQ SN:PGA_scaffold29101__1_contigs__length_12705 LN:12705 skipping SAM header line: @SQ SN:PGA_scaffold29103__1_contigs__length_14173 LN:14173 skipping SAM header line: @SQ SN:PGA_scaffold29133__1_contigs__length_46329 LN:46329 skipping SAM header line: @SQ SN:PGA_scaffold29135__1_contigs__length_25735 LN:25735 skipping SAM header line: @SQ SN:PGA_scaffold29152__1_contigs__length_12800 LN:12800 skipping SAM header line: @SQ SN:PGA_scaffold29165__1_contigs__length_14323 LN:14323 skipping SAM header line: @SQ SN:PGA_scaffold29188__1_contigs__length_14557 LN:14557 skipping SAM header line: @SQ SN:PGA_scaffold29201__1_contigs__length_15424 LN:15424 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold29316__1_contigs__length_10214 LN:10214 skipping SAM header line: @SQ SN:PGA_scaffold29317__1_contigs__length_16559 LN:16559 skipping SAM header line: @SQ SN:PGA_scaffold29318__1_contigs__length_10431 LN:10431 skipping SAM header line: @SQ SN:PGA_scaffold29320__1_contigs__length_12906 LN:12906 skipping SAM header line: @SQ SN:PGA_scaffold29322__1_contigs__length_16731 LN:16731 skipping SAM header line: @SQ SN:PGA_scaffold29323__1_contigs__length_18479 LN:18479 skipping SAM header line: @SQ SN:PGA_scaffold29325__1_contigs__length_10093 LN:10093 skipping SAM header line: @SQ SN:PGA_scaffold29326__1_contigs__length_18380 LN:18380 skipping SAM header line: @SQ SN:PGA_scaffold29327__1_contigs__length_11759 LN:11759 skipping SAM header line: @SQ SN:PGA_scaffold29328__1_contigs__length_18367 LN:18367 skipping SAM header line: @SQ SN:PGA_scaffold29330__1_contigs__length_18936 LN:18936 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold29356__1_contigs__length_14075 LN:14075 skipping SAM header line: @SQ SN:PGA_scaffold29357__1_contigs__length_13445 LN:13445 skipping SAM header line: @SQ SN:PGA_scaffold29365__1_contigs__length_20246 LN:20246 skipping SAM header line: @SQ SN:PGA_scaffold29368__1_contigs__length_17390 LN:17390 skipping SAM header line: @SQ SN:PGA_scaffold29369__1_contigs__length_12829 LN:12829 skipping SAM header line: @SQ SN:PGA_scaffold29370__1_contigs__length_11071 LN:11071 skipping SAM header line: @SQ SN:PGA_scaffold29373__1_contigs__length_17353 LN:17353 skipping SAM header line: @SQ SN:PGA_scaffold29374__1_contigs__length_13254 LN:13254 skipping SAM header line: @SQ SN:PGA_scaffold29377__1_contigs__length_17124 LN:17124 skipping SAM header line: @SQ SN:PGA_scaffold29505__1_contigs__length_10764 LN:10764 skipping SAM header line: @SQ SN:PGA_scaffold29665__1_contigs__length_11035 LN:11035 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold29989__1_contigs__length_10804 LN:10804 skipping SAM header line: @SQ SN:PGA_scaffold29993__1_contigs__length_11557 LN:11557 skipping SAM header line: @SQ SN:PGA_scaffold30010__1_contigs__length_10219 LN:10219 skipping SAM header line: @SQ SN:PGA_scaffold30011__1_contigs__length_11296 LN:11296 skipping SAM header line: @SQ SN:PGA_scaffold30015__1_contigs__length_10110 LN:10110 skipping SAM header line: @SQ SN:PGA_scaffold30022__1_contigs__length_19405 LN:19405 skipping SAM header line: @SQ SN:PGA_scaffold30025__1_contigs__length_12102 LN:12102 skipping SAM header line: @SQ SN:PGA_scaffold30044__1_contigs__length_10352 LN:10352 skipping SAM header line: @SQ SN:PGA_scaffold30055__1_contigs__length_11275 LN:11275 skipping SAM header line: @SQ SN:PGA_scaffold30132__1_contigs__length_10685 LN:10685 skipping SAM header line: @SQ SN:PGA_scaffold30172__1_contigs__length_10039 LN:10039 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold30321__1_contigs__length_17045 LN:17045 skipping SAM header line: @SQ SN:PGA_scaffold30328__1_contigs__length_11668 LN:11668 skipping SAM header line: @SQ SN:PGA_scaffold30332__1_contigs__length_10821 LN:10821 skipping SAM header line: @SQ SN:PGA_scaffold30336__1_contigs__length_17323 LN:17323 skipping SAM header line: @SQ SN:PGA_scaffold30341__1_contigs__length_17156 LN:17156 skipping SAM header line: @SQ SN:PGA_scaffold30353__1_contigs__length_15978 LN:15978 skipping SAM header line: @SQ SN:PGA_scaffold30356__1_contigs__length_11902 LN:11902 skipping SAM header line: @SQ SN:PGA_scaffold30361__1_contigs__length_20550 LN:20550 skipping SAM header line: @SQ SN:PGA_scaffold30362__1_contigs__length_17606 LN:17606 skipping SAM header line: @SQ SN:PGA_scaffold30369__1_contigs__length_10940 LN:10940 skipping SAM header line: @SQ SN:PGA_scaffold30372__1_contigs__length_11771 LN:11771 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold31371__1_contigs__length_17378 LN:17378 skipping SAM header line: @SQ SN:PGA_scaffold31377__1_contigs__length_22923 LN:22923 skipping SAM header line: @SQ SN:PGA_scaffold31378__1_contigs__length_12722 LN:12722 skipping SAM header line: @SQ SN:PGA_scaffold31381__1_contigs__length_16543 LN:16543 skipping SAM header line: @SQ SN:PGA_scaffold31383__1_contigs__length_26303 LN:26303 skipping SAM header line: @SQ SN:PGA_scaffold31388__1_contigs__length_12086 LN:12086 skipping SAM header line: @SQ SN:PGA_scaffold31394__1_contigs__length_28374 LN:28374 skipping SAM header line: @SQ SN:PGA_scaffold31397__1_contigs__length_19518 LN:19518 skipping SAM header line: @SQ SN:PGA_scaffold31400__1_contigs__length_17668 LN:17668 skipping SAM header line: @SQ SN:PGA_scaffold31405__1_contigs__length_18671 LN:18671 skipping SAM header line: @SQ SN:PGA_scaffold31409__1_contigs__length_14798 LN:14798 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold31513__1_contigs__length_10835 LN:10835 skipping SAM header line: @SQ SN:PGA_scaffold31516__1_contigs__length_11405 LN:11405 skipping SAM header line: @SQ SN:PGA_scaffold31519__1_contigs__length_10399 LN:10399 skipping SAM header line: @SQ SN:PGA_scaffold31521__1_contigs__length_18089 LN:18089 skipping SAM header line: @SQ SN:PGA_scaffold31526__1_contigs__length_12072 LN:12072 skipping SAM header line: @SQ SN:PGA_scaffold31530__1_contigs__length_11215 LN:11215 skipping SAM header line: @SQ SN:PGA_scaffold31531__1_contigs__length_13186 LN:13186 skipping SAM header line: @SQ SN:PGA_scaffold31535__1_contigs__length_10351 LN:10351 skipping SAM header line: @SQ SN:PGA_scaffold31536__1_contigs__length_10190 LN:10190 skipping SAM header line: @SQ SN:PGA_scaffold31539__1_contigs__length_21499 LN:21499 skipping SAM header line: @SQ SN:PGA_scaffold31546__1_contigs__length_14468 LN:14468 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold31611__1_contigs__length_10429 LN:10429 skipping SAM header line: @SQ SN:PGA_scaffold31619__1_contigs__length_25003 LN:25003 skipping SAM header line: @SQ SN:PGA_scaffold31622__1_contigs__length_24280 LN:24280 skipping SAM header line: @SQ SN:PGA_scaffold31623__1_contigs__length_13801 LN:13801 skipping SAM header line: @SQ SN:PGA_scaffold31626__1_contigs__length_18480 LN:18480 skipping SAM header line: @SQ SN:PGA_scaffold31632__1_contigs__length_11126 LN:11126 skipping SAM header line: @SQ SN:PGA_scaffold31633__1_contigs__length_13492 LN:13492 skipping SAM header line: @SQ SN:PGA_scaffold31637__1_contigs__length_15577 LN:15577 skipping SAM header line: @SQ SN:PGA_scaffold31640__1_contigs__length_21648 LN:21648 skipping SAM header line: @SQ SN:PGA_scaffold31641__1_contigs__length_16425 LN:16425 skipping SAM header line: @SQ SN:PGA_scaffold31642__1_contigs__length_33616 LN:33616 skipping SAM header line: @SQ SN:PGA_scaffold31643__1_contigs__length_11907 LN:11907 skipping SAM header line: @SQ SN:PGA_scaffold31644__1_contigs__length_17205 LN:17205 skipping SAM header line: @SQ SN:PGA_scaffold31645__1_contigs__length_12114 LN:12114 skipping SAM header line: @SQ SN:PGA_scaffold31649__1_contigs__length_16591 LN:16591 skipping SAM header line: @SQ SN:PGA_scaffold31655__1_contigs__length_25111 LN:25111 skipping SAM header line: @SQ SN:PGA_scaffold31658__1_contigs__length_10001 LN:10001 skipping SAM header line: @SQ SN:PGA_scaffold31663__1_contigs__length_16538 LN:16538 skipping SAM header line: @SQ SN:PGA_scaffold31666__1_contigs__length_11630 LN:11630 skipping SAM header line: @SQ SN:PGA_scaffold31667__1_contigs__length_13121 LN:13121 skipping SAM header line: @SQ SN:PGA_scaffold31669__1_contigs__length_10088 LN:10088 skipping SAM header line: @SQ SN:PGA_scaffold31674__1_contigs__length_14958 LN:14958 skipping SAM header line: @SQ SN:PGA_scaffold31677__1_contigs__length_17185 LN:17185 skipping SAM header line: @SQ SN:PGA_scaffold31678__1_contigs__length_11855 LN:11855 skipping SAM header line: @SQ SN:PGA_scaffold31680__1_contigs__length_13804 LN:13804 skipping SAM header line: @SQ SN:PGA_scaffold31683__1_contigs__length_13752 LN:13752 skipping SAM header line: @SQ SN:PGA_scaffold31691__1_contigs__length_10160 LN:10160 skipping SAM header line: @SQ SN:PGA_scaffold31696__1_contigs__length_24124 LN:24124 skipping SAM header line: @SQ SN:PGA_scaffold31697__1_contigs__length_10697 LN:10697 skipping SAM header line: @SQ SN:PGA_scaffold31699__1_contigs__length_13180 LN:13180 skipping SAM header line: @SQ SN:PGA_scaffold31703__1_contigs__length_22646 LN:22646 skipping SAM header line: @SQ SN:PGA_scaffold31707__1_contigs__length_29593 LN:29593 skipping SAM header line: @SQ SN:PGA_scaffold31708__1_contigs__length_19432 LN:19432 skipping SAM header line: @SQ SN:PGA_scaffold31711__1_contigs__length_21778 LN:21778 skipping SAM header line: @SQ SN:PGA_scaffold31713__1_contigs__length_13607 LN:13607 skipping SAM header line: @SQ SN:PGA_scaffold31714__1_contigs__length_11997 LN:11997 skipping SAM header line: @SQ SN:PGA_scaffold31716__1_contigs__length_14352 LN:14352 skipping SAM header line: @SQ SN:PGA_scaffold31717__1_contigs__length_11269 LN:11269 skipping SAM header line: @SQ SN:PGA_scaffold31718__1_contigs__length_22828 LN:22828 skipping SAM header line: @SQ SN:PGA_scaffold31722__1_contigs__length_14272 LN:14272 skipping SAM header line: @SQ SN:PGA_scaffold31723__1_contigs__length_15034 LN:15034 skipping SAM header line: @SQ SN:PGA_scaffold31729__1_contigs__length_25701 LN:25701 skipping SAM header line: @SQ SN:PGA_scaffold31730__1_contigs__length_15904 LN:15904 skipping SAM header line: @SQ SN:PGA_scaffold31735__1_contigs__length_17211 LN:17211 skipping SAM header line: @SQ SN:PGA_scaffold31738__1_contigs__length_23027 LN:23027 skipping SAM header line: @SQ SN:PGA_scaffold31739__1_contigs__length_12078 LN:12078 skipping SAM header line: @SQ SN:PGA_scaffold31740__1_contigs__length_16733 LN:16733 skipping SAM header line: @SQ SN:PGA_scaffold31741__1_contigs__length_19907 LN:19907 skipping SAM header line: @SQ SN:PGA_scaffold31747__1_contigs__length_34728 LN:34728 skipping SAM header line: @SQ SN:PGA_scaffold31748__1_contigs__length_17993 LN:17993 skipping SAM header line: @SQ SN:PGA_scaffold31751__1_contigs__length_33342 LN:33342 skipping SAM header line: @SQ SN:PGA_scaffold31754__1_contigs__length_15745 LN:15745 skipping SAM header line: @SQ SN:PGA_scaffold31764__1_contigs__length_20026 LN:20026 skipping SAM header line: @SQ SN:PGA_scaffold31765__1_contigs__length_11735 LN:11735 skipping SAM header line: @SQ SN:PGA_scaffold31767__1_contigs__length_15646 LN:15646 skipping SAM header line: @SQ SN:PGA_scaffold31769__1_contigs__length_18789 LN:18789 skipping SAM header line: @SQ SN:PGA_scaffold31772__1_contigs__length_10739 LN:10739 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold31811__1_contigs__length_13567 LN:13567 skipping SAM header line: @SQ SN:PGA_scaffold31812__1_contigs__length_23207 LN:23207 skipping SAM header line: @SQ SN:PGA_scaffold31815__1_contigs__length_17241 LN:17241 skipping SAM header line: @SQ SN:PGA_scaffold31816__1_contigs__length_11090 LN:11090 skipping SAM header line: @SQ SN:PGA_scaffold31817__1_contigs__length_19400 LN:19400 skipping SAM header line: @SQ SN:PGA_scaffold31930__1_contigs__length_12003 LN:12003 skipping SAM header line: @SQ SN:PGA_scaffold31947__1_contigs__length_11664 LN:11664 skipping SAM header line: @SQ SN:PGA_scaffold31965__1_contigs__length_18133 LN:18133 skipping SAM header line: @SQ SN:PGA_scaffold31978__1_contigs__length_11520 LN:11520 skipping SAM header line: @SQ SN:PGA_scaffold31987__1_contigs__length_11016 LN:11016 skipping SAM header line: @SQ SN:PGA_scaffold31989__1_contigs__length_10208 LN:10208 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold32042__1_contigs__length_24927 LN:24927 skipping SAM header line: @SQ SN:PGA_scaffold32043__1_contigs__length_17381 LN:17381 skipping SAM header line: @SQ SN:PGA_scaffold32044__1_contigs__length_14848 LN:14848 skipping SAM header line: @SQ SN:PGA_scaffold32046__1_contigs__length_31565 LN:31565 skipping SAM header line: @SQ SN:PGA_scaffold32048__1_contigs__length_23410 LN:23410 skipping SAM header line: @SQ SN:PGA_scaffold32054__1_contigs__length_13973 LN:13973 skipping SAM header line: @SQ SN:PGA_scaffold32055__1_contigs__length_12163 LN:12163 skipping SAM header line: @SQ SN:PGA_scaffold32056__1_contigs__length_16602 LN:16602 skipping SAM header line: @SQ SN:PGA_scaffold32060__1_contigs__length_17210 LN:17210 skipping SAM header line: @SQ SN:PGA_scaffold32068__1_contigs__length_20410 LN:20410 skipping SAM header line: @SQ SN:PGA_scaffold32072__1_contigs__length_25676 LN:25676 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold32174__1_contigs__length_11533 LN:11533 skipping SAM header line: @SQ SN:PGA_scaffold32179__1_contigs__length_12831 LN:12831 skipping SAM header line: @SQ SN:PGA_scaffold32180__1_contigs__length_11854 LN:11854 skipping SAM header line: @SQ SN:PGA_scaffold32184__1_contigs__length_11206 LN:11206 skipping SAM header line: @SQ SN:PGA_scaffold32200__1_contigs__length_20934 LN:20934 skipping SAM header line: @SQ SN:PGA_scaffold32215__1_contigs__length_17964 LN:17964 skipping SAM header line: @SQ SN:PGA_scaffold32221__1_contigs__length_16623 LN:16623 skipping SAM header line: @SQ SN:PGA_scaffold32223__1_contigs__length_10383 LN:10383 skipping SAM header line: @SQ SN:PGA_scaffold32255__1_contigs__length_11736 LN:11736 skipping SAM header line: @SQ SN:PGA_scaffold32265__1_contigs__length_10711 LN:10711 skipping SAM header line: @SQ SN:PGA_scaffold32281__1_contigs__length_10519 LN:10519 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold32514__1_contigs__length_31990 LN:31990 skipping SAM header line: @SQ SN:PGA_scaffold32519__1_contigs__length_10309 LN:10309 skipping SAM header line: @SQ SN:PGA_scaffold32534__1_contigs__length_11546 LN:11546 skipping SAM header line: @SQ SN:PGA_scaffold32535__1_contigs__length_13023 LN:13023 skipping SAM header line: @SQ SN:PGA_scaffold32541__1_contigs__length_11466 LN:11466 skipping SAM header line: @SQ SN:PGA_scaffold32570__1_contigs__length_10954 LN:10954 skipping SAM header line: @SQ SN:PGA_scaffold32611__1_contigs__length_26190 LN:26190 skipping SAM header line: @SQ SN:PGA_scaffold32613__1_contigs__length_17022 LN:17022 skipping SAM header line: @SQ SN:PGA_scaffold32631__1_contigs__length_12282 LN:12282 skipping SAM header line: @SQ SN:PGA_scaffold32640__1_contigs__length_13749 LN:13749 skipping SAM header line: @SQ SN:PGA_scaffold32711__1_contigs__length_22694 LN:22694 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold32934__1_contigs__length_18106 LN:18106 skipping SAM header line: @SQ SN:PGA_scaffold32970__1_contigs__length_14230 LN:14230 skipping SAM header line: @SQ SN:PGA_scaffold33025__1_contigs__length_12027 LN:12027 skipping SAM header line: @SQ SN:PGA_scaffold33043__1_contigs__length_14738 LN:14738 skipping SAM header line: @SQ SN:PGA_scaffold33125__1_contigs__length_16430 LN:16430 skipping SAM header line: @SQ SN:PGA_scaffold33144__1_contigs__length_12748 LN:12748 skipping SAM header line: @SQ SN:PGA_scaffold33190__1_contigs__length_10961 LN:10961 skipping SAM header line: @SQ SN:PGA_scaffold33195__1_contigs__length_15313 LN:15313 skipping SAM header line: @SQ SN:PGA_scaffold33236__1_contigs__length_20000 LN:20000 skipping SAM header line: @SQ SN:PGA_scaffold33251__1_contigs__length_21014 LN:21014 skipping SAM header line: @SQ SN:PGA_scaffold33287__1_contigs__length_25380 LN:25380 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold34178__1_contigs__length_11708 LN:11708 skipping SAM header line: @SQ SN:PGA_scaffold34180__1_contigs__length_12595 LN:12595 skipping SAM header line: @SQ SN:PGA_scaffold34199__1_contigs__length_13942 LN:13942 skipping SAM header line: @SQ SN:PGA_scaffold34214__1_contigs__length_13854 LN:13854 skipping SAM header line: @SQ SN:PGA_scaffold34303__1_contigs__length_24124 LN:24124 skipping SAM header line: @SQ SN:PGA_scaffold34314__1_contigs__length_11032 LN:11032 skipping SAM header line: @SQ SN:PGA_scaffold34347__1_contigs__length_13348 LN:13348 skipping SAM header line: @SQ SN:PGA_scaffold34377__1_contigs__length_10180 LN:10180 skipping SAM header line: @SQ SN:PGA_scaffold34449__1_contigs__length_24339 LN:24339 skipping SAM header line: @SQ SN:PGA_scaffold34488__1_contigs__length_11289 LN:11289 skipping SAM header line: @SQ SN:PGA_scaffold34501__1_contigs__length_16891 LN:16891 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold35203__1_contigs__length_12548 LN:12548 skipping SAM header line: @SQ SN:PGA_scaffold35359__1_contigs__length_13200 LN:13200 skipping SAM header line: @SQ SN:PGA_scaffold35408__1_contigs__length_26152 LN:26152 skipping SAM header line: @SQ SN:PGA_scaffold35418__1_contigs__length_16342 LN:16342 skipping SAM header line: @SQ SN:PGA_scaffold35440__1_contigs__length_12749 LN:12749 skipping SAM header line: @SQ SN:PGA_scaffold35446__1_contigs__length_12630 LN:12630 skipping SAM header line: @SQ SN:PGA_scaffold35470__1_contigs__length_11714 LN:11714 skipping SAM header line: @SQ SN:PGA_scaffold35481__1_contigs__length_12693 LN:12693 skipping SAM header line: @SQ SN:PGA_scaffold35486__1_contigs__length_13007 LN:13007 skipping SAM header line: @SQ SN:PGA_scaffold35510__1_contigs__length_10707 LN:10707 skipping SAM header line: @SQ SN:PGA_scaffold35543__1_contigs__length_11344 LN:11344 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold35799__1_contigs__length_14290 LN:14290 skipping SAM header line: @SQ SN:PGA_scaffold35802__1_contigs__length_14541 LN:14541 skipping SAM header line: @SQ SN:PGA_scaffold35809__1_contigs__length_21601 LN:21601 skipping SAM header line: @SQ SN:PGA_scaffold35850__1_contigs__length_13112 LN:13112 skipping SAM header line: @SQ SN:PGA_scaffold35865__1_contigs__length_13223 LN:13223 skipping SAM header line: @SQ SN:PGA_scaffold35884__1_contigs__length_16440 LN:16440 skipping SAM header line: @SQ SN:PGA_scaffold35888__1_contigs__length_12234 LN:12234 skipping SAM header line: @SQ SN:PGA_scaffold35908__1_contigs__length_20092 LN:20092 skipping SAM header line: @SQ SN:PGA_scaffold35942__1_contigs__length_11063 LN:11063 skipping SAM header line: @SQ SN:PGA_scaffold35964__1_contigs__length_11534 LN:11534 skipping SAM header line: @SQ SN:PGA_scaffold35976__1_contigs__length_11164 LN:11164 skipping SAM header line: @SQ SN:PGA_scaffold35983__1_contigs__length_18604 LN:18604 skipping SAM header line: @SQ SN:PGA_scaffold36061__1_contigs__length_14387 LN:14387 skipping SAM header line: @SQ SN:PGA_scaffold36100__1_contigs__length_14116 LN:14116 skipping SAM header line: @SQ SN:PGA_scaffold36101__1_contigs__length_16966 LN:16966 skipping SAM header line: @SQ SN:PGA_scaffold36103__1_contigs__length_13646 LN:13646 skipping SAM header line: @SQ SN:PGA_scaffold36104__1_contigs__length_11722 LN:11722 skipping SAM header line: @SQ SN:PGA_scaffold36113__1_contigs__length_11534 LN:11534 skipping SAM header line: @SQ SN:PGA_scaffold36155__1_contigs__length_14141 LN:14141 skipping SAM header line: @SQ SN:PGA_scaffold36162__1_contigs__length_16084 LN:16084 skipping SAM header line: @SQ SN:PGA_scaffold36224__1_contigs__length_12016 LN:12016 skipping SAM header line: @SQ SN:PGA_scaffold36240__1_contigs__length_12467 LN:12467 skipping SAM header line: @SQ SN:PGA_scaffold36242__1_contigs__length_19565 LN:19565 skipping SAM header line: @SQ SN:PGA_scaffold36262__1_contigs__length_16404 LN:16404 skipping SAM header line: @SQ SN:PGA_scaffold36269__1_contigs__length_15088 LN:15088 skipping SAM header line: @SQ SN:PGA_scaffold36302__1_contigs__length_13274 LN:13274 skipping SAM header line: @SQ SN:PGA_scaffold36317__1_contigs__length_14415 LN:14415 skipping SAM header line: @SQ SN:PGA_scaffold36323__1_contigs__length_14613 LN:14613 skipping SAM header line: @SQ SN:PGA_scaffold36339__1_contigs__length_18250 LN:18250 skipping SAM header line: @SQ SN:PGA_scaffold36358__1_contigs__length_13444 LN:13444 skipping SAM header line: @SQ SN:PGA_scaffold36387__1_contigs__length_25065 LN:25065 skipping SAM header line: @SQ SN:PGA_scaffold36413__1_contigs__length_16289 LN:16289 skipping SAM header line: @SQ SN:PGA_scaffold36478__1_contigs__length_27226 LN:27226 skipping SAM header line: @SQ SN:PGA_scaffold36480__1_contigs__length_11350 LN:11350 skipping SAM header line: @SQ SN:PGA_scaffold36484__1_contigs__length_32484 LN:32484 skipping SAM header line: @SQ SN:PGA_scaffold36489__1_contigs__length_13015 LN:13015 skipping SAM header line: @SQ SN:PGA_scaffold36546__1_contigs__length_12185 LN:12185 skipping SAM header line: @SQ SN:PGA_scaffold36571__1_contigs__length_11297 LN:11297 skipping SAM header line: @SQ SN:PGA_scaffold36612__1_contigs__length_11041 LN:11041 skipping SAM header line: @SQ SN:PGA_scaffold36651__1_contigs__length_21921 LN:21921 skipping SAM header line: @SQ SN:PGA_scaffold36668__1_contigs__length_10961 LN:10961 skipping SAM header line: @SQ SN:PGA_scaffold36670__1_contigs__length_13065 LN:13065 skipping SAM header line: @SQ SN:PGA_scaffold36673__1_contigs__length_11867 LN:11867 skipping SAM header line: @SQ SN:PGA_scaffold36689__1_contigs__length_14553 LN:14553 skipping SAM header line: @SQ SN:PGA_scaffold36694__1_contigs__length_18775 LN:18775 skipping SAM header line: @SQ SN:PGA_scaffold36724__1_contigs__length_11618 LN:11618 skipping SAM header line: @SQ SN:PGA_scaffold36821__1_contigs__length_10386 LN:10386 skipping SAM header line: @SQ SN:PGA_scaffold36823__1_contigs__length_13245 LN:13245 skipping SAM header line: @SQ SN:PGA_scaffold36833__1_contigs__length_20025 LN:20025 skipping SAM header line: @SQ SN:PGA_scaffold36845__1_contigs__length_17096 LN:17096 skipping SAM header line: @SQ SN:PGA_scaffold36846__1_contigs__length_12153 LN:12153 skipping SAM header line: @SQ SN:PGA_scaffold36848__1_contigs__length_11208 LN:11208 skipping SAM header line: @SQ SN:PGA_scaffold36873__1_contigs__length_13288 LN:13288 skipping SAM header line: @SQ SN:PGA_scaffold36882__1_contigs__length_16756 LN:16756 skipping SAM header line: @SQ SN:PGA_scaffold36887__1_contigs__length_15852 LN:15852 skipping SAM header line: @SQ SN:PGA_scaffold36907__1_contigs__length_32852 LN:32852 skipping SAM header line: @SQ SN:PGA_scaffold36935__1_contigs__length_12837 LN:12837 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold37328__1_contigs__length_10685 LN:10685 skipping SAM header line: @SQ SN:PGA_scaffold37557__1_contigs__length_10518 LN:10518 skipping SAM header line: @SQ SN:PGA_scaffold37565__1_contigs__length_11017 LN:11017 skipping SAM header line: @SQ SN:PGA_scaffold37572__1_contigs__length_13878 LN:13878 skipping SAM header line: @SQ SN:PGA_scaffold37574__1_contigs__length_18623 LN:18623 skipping SAM header line: @SQ SN:PGA_scaffold37583__1_contigs__length_13253 LN:13253 skipping SAM header line: @SQ SN:PGA_scaffold37594__1_contigs__length_12407 LN:12407 skipping SAM header line: @SQ SN:PGA_scaffold37607__1_contigs__length_11863 LN:11863 skipping SAM header line: @SQ SN:PGA_scaffold37609__1_contigs__length_19611 LN:19611 skipping SAM header line: @SQ SN:PGA_scaffold37613__1_contigs__length_33568 LN:33568 skipping SAM header line: @SQ SN:PGA_scaffold37637__1_contigs__length_10512 LN:10512 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold37955__1_contigs__length_10895 LN:10895 skipping SAM header line: @SQ SN:PGA_scaffold37958__1_contigs__length_14680 LN:14680 skipping SAM header line: @SQ SN:PGA_scaffold37961__1_contigs__length_10994 LN:10994 skipping SAM header line: @SQ SN:PGA_scaffold37965__1_contigs__length_13881 LN:13881 skipping SAM header line: @SQ SN:PGA_scaffold37969__1_contigs__length_16955 LN:16955 skipping SAM header line: @SQ SN:PGA_scaffold37970__1_contigs__length_18611 LN:18611 skipping SAM header line: @SQ SN:PGA_scaffold37972__1_contigs__length_19489 LN:19489 skipping SAM header line: @SQ SN:PGA_scaffold37973__1_contigs__length_15127 LN:15127 skipping SAM header line: @SQ SN:PGA_scaffold37974__1_contigs__length_17718 LN:17718 skipping SAM header line: @SQ SN:PGA_scaffold37985__1_contigs__length_24271 LN:24271 skipping SAM header line: @SQ SN:PGA_scaffold37994__1_contigs__length_13660 LN:13660 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold38121__1_contigs__length_22090 LN:22090 skipping SAM header line: @SQ SN:PGA_scaffold38122__1_contigs__length_13308 LN:13308 skipping SAM header line: @SQ SN:PGA_scaffold38128__1_contigs__length_16021 LN:16021 skipping SAM header line: @SQ SN:PGA_scaffold38134__1_contigs__length_17916 LN:17916 skipping SAM header line: @SQ SN:PGA_scaffold38138__1_contigs__length_12478 LN:12478 skipping SAM header line: @SQ SN:PGA_scaffold38139__1_contigs__length_10302 LN:10302 skipping SAM header line: @SQ SN:PGA_scaffold38142__1_contigs__length_13486 LN:13486 skipping SAM header line: @SQ SN:PGA_scaffold38146__1_contigs__length_10411 LN:10411 skipping SAM header line: @SQ SN:PGA_scaffold38149__1_contigs__length_12716 LN:12716 skipping SAM header line: @SQ SN:PGA_scaffold38161__1_contigs__length_13141 LN:13141 skipping SAM header line: @SQ SN:PGA_scaffold38162__1_contigs__length_12721 LN:12721 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold38219__1_contigs__length_11723 LN:11723 skipping SAM header line: @SQ SN:PGA_scaffold38226__1_contigs__length_16424 LN:16424 skipping SAM header line: @SQ SN:PGA_scaffold38230__1_contigs__length_10088 LN:10088 skipping SAM header line: @SQ SN:PGA_scaffold38233__1_contigs__length_20833 LN:20833 skipping SAM header line: @SQ SN:PGA_scaffold38239__1_contigs__length_13442 LN:13442 skipping SAM header line: @SQ SN:PGA_scaffold38242__1_contigs__length_24365 LN:24365 skipping SAM header line: @SQ SN:PGA_scaffold38250__1_contigs__length_13958 LN:13958 skipping SAM header line: @SQ SN:PGA_scaffold38254__1_contigs__length_11649 LN:11649 skipping SAM header line: @SQ SN:PGA_scaffold38259__1_contigs__length_20507 LN:20507 skipping SAM header line: @SQ SN:PGA_scaffold38263__1_contigs__length_11475 LN:11475 skipping SAM header line: @SQ SN:PGA_scaffold38269__1_contigs__length_14073 LN:14073 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold38344__1_contigs__length_10926 LN:10926 skipping SAM header line: @SQ SN:PGA_scaffold38350__1_contigs__length_16183 LN:16183 skipping SAM header line: @SQ SN:PGA_scaffold38353__1_contigs__length_14021 LN:14021 skipping SAM header line: @SQ SN:PGA_scaffold38355__1_contigs__length_23111 LN:23111 skipping SAM header line: @SQ SN:PGA_scaffold38360__1_contigs__length_11162 LN:11162 skipping SAM header line: @SQ SN:PGA_scaffold38363__1_contigs__length_12246 LN:12246 skipping SAM header line: @SQ SN:PGA_scaffold38367__1_contigs__length_10463 LN:10463 skipping SAM header line: @SQ SN:PGA_scaffold38380__1_contigs__length_12162 LN:12162 skipping SAM header line: @SQ SN:PGA_scaffold38382__1_contigs__length_23172 LN:23172 skipping SAM header line: @SQ SN:PGA_scaffold38386__1_contigs__length_12970 LN:12970 skipping SAM header line: @SQ SN:PGA_scaffold38399__1_contigs__length_15091 LN:15091 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold38434__1_contigs__length_10468 LN:10468 skipping SAM header line: @SQ SN:PGA_scaffold38439__1_contigs__length_10257 LN:10257 skipping SAM header line: @SQ SN:PGA_scaffold38440__1_contigs__length_26984 LN:26984 skipping SAM header line: @SQ SN:PGA_scaffold38441__1_contigs__length_11891 LN:11891 skipping SAM header line: @SQ SN:PGA_scaffold38442__1_contigs__length_20313 LN:20313 skipping SAM header line: @SQ SN:PGA_scaffold38443__1_contigs__length_12515 LN:12515 skipping SAM header line: @SQ SN:PGA_scaffold38450__1_contigs__length_11331 LN:11331 skipping SAM header line: @SQ SN:PGA_scaffold38452__1_contigs__length_10435 LN:10435 skipping SAM header line: @SQ SN:PGA_scaffold38456__1_contigs__length_19879 LN:19879 skipping SAM header line: @SQ SN:PGA_scaffold38461__1_contigs__length_15948 LN:15948 skipping SAM header line: @SQ SN:PGA_scaffold38463__1_contigs__length_20358 LN:20358 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold38566__1_contigs__length_14466 LN:14466 skipping SAM header line: @SQ SN:PGA_scaffold38571__1_contigs__length_13401 LN:13401 skipping SAM header line: @SQ SN:PGA_scaffold38576__1_contigs__length_12314 LN:12314 skipping SAM header line: @SQ SN:PGA_scaffold38578__1_contigs__length_13211 LN:13211 skipping SAM header line: @SQ SN:PGA_scaffold38581__1_contigs__length_16685 LN:16685 skipping SAM header line: @SQ SN:PGA_scaffold38587__1_contigs__length_12806 LN:12806 skipping SAM header line: @SQ SN:PGA_scaffold38590__1_contigs__length_21443 LN:21443 skipping SAM header line: @SQ SN:PGA_scaffold38595__1_contigs__length_10400 LN:10400 skipping SAM header line: @SQ SN:PGA_scaffold38604__1_contigs__length_11343 LN:11343 skipping SAM header line: @SQ SN:PGA_scaffold38608__1_contigs__length_14626 LN:14626 skipping SAM header line: @SQ SN:PGA_scaffold38613__1_contigs__length_12914 LN:12914 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold38678__1_contigs__length_11426 LN:11426 skipping SAM header line: @SQ SN:PGA_scaffold38679__1_contigs__length_11055 LN:11055 skipping SAM header line: @SQ SN:PGA_scaffold38684__1_contigs__length_12004 LN:12004 skipping SAM header line: @SQ SN:PGA_scaffold38689__1_contigs__length_19529 LN:19529 skipping SAM header line: @SQ SN:PGA_scaffold38690__1_contigs__length_11278 LN:11278 skipping SAM header line: @SQ SN:PGA_scaffold38701__1_contigs__length_10742 LN:10742 skipping SAM header line: @SQ SN:PGA_scaffold38704__1_contigs__length_10904 LN:10904 skipping SAM header line: @SQ SN:PGA_scaffold38706__1_contigs__length_11892 LN:11892 skipping SAM header line: @SQ SN:PGA_scaffold38717__1_contigs__length_10463 LN:10463 skipping SAM header line: @SQ SN:PGA_scaffold38743__1_contigs__length_15850 LN:15850 skipping SAM header line: @SQ SN:PGA_scaffold38753__1_contigs__length_13985 LN:13985 skipping SAM header line: @SQ SN:PGA_scaffold38783__1_contigs__length_10572 LN:10572 skipping SAM header line: @SQ SN:PGA_scaffold38786__1_contigs__length_10905 LN:10905 skipping SAM header line: @SQ SN:PGA_scaffold38791__1_contigs__length_10821 LN:10821 skipping SAM header line: @SQ SN:PGA_scaffold38798__1_contigs__length_15024 LN:15024 skipping SAM header line: @SQ SN:PGA_scaffold38806__1_contigs__length_13189 LN:13189 skipping SAM header line: @SQ SN:PGA_scaffold38807__1_contigs__length_12661 LN:12661 skipping SAM header line: @SQ SN:PGA_scaffold38857__1_contigs__length_18024 LN:18024 skipping SAM header line: @SQ SN:PGA_scaffold38862__1_contigs__length_15947 LN:15947 skipping SAM header line: @SQ SN:PGA_scaffold38865__1_contigs__length_23962 LN:23962 skipping SAM header line: @SQ SN:PGA_scaffold38877__1_contigs__length_11214 LN:11214 skipping SAM header line: @SQ SN:PGA_scaffold38891__1_contigs__length_11013 LN:11013 skipping SAM header line: @SQ SN:PGA_scaffold38900__1_contigs__length_13720 LN:13720 skipping SAM header line: @SQ SN:PGA_scaffold38913__1_contigs__length_12179 LN:12179 skipping SAM header line: @SQ SN:PGA_scaffold38918__1_contigs__length_10478 LN:10478 skipping SAM header line: @SQ SN:PGA_scaffold38931__1_contigs__length_13834 LN:13834 skipping SAM header line: @SQ SN:PGA_scaffold38935__1_contigs__length_23118 LN:23118 skipping SAM header line: @SQ SN:PGA_scaffold38974__1_contigs__length_15268 LN:15268 skipping SAM header line: @SQ SN:PGA_scaffold38999__1_contigs__length_12375 LN:12375 skipping SAM header line: @SQ SN:PGA_scaffold39019__1_contigs__length_10297 LN:10297 skipping SAM header line: @SQ SN:PGA_scaffold39036__1_contigs__length_10155 LN:10155 skipping SAM header line: @SQ SN:PGA_scaffold39043__1_contigs__length_49862 LN:49862 skipping SAM header line: @SQ SN:PGA_scaffold39046__1_contigs__length_14209 LN:14209 skipping SAM header line: @SQ SN:PGA_scaffold39055__1_contigs__length_12247 LN:12247 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold39177__1_contigs__length_10715 LN:10715 skipping SAM header line: @SQ SN:PGA_scaffold39255__1_contigs__length_19352 LN:19352 skipping SAM header line: @SQ SN:PGA_scaffold39257__1_contigs__length_10310 LN:10310 skipping SAM header line: @SQ SN:PGA_scaffold39274__1_contigs__length_13299 LN:13299 skipping SAM header line: @SQ SN:PGA_scaffold39285__1_contigs__length_10270 LN:10270 skipping SAM header line: @SQ SN:PGA_scaffold39295__1_contigs__length_13566 LN:13566 skipping SAM header line: @SQ SN:PGA_scaffold39309__1_contigs__length_12526 LN:12526 skipping SAM header line: @SQ SN:PGA_scaffold39316__1_contigs__length_11355 LN:11355 skipping SAM header line: @SQ SN:PGA_scaffold39318__1_contigs__length_15227 LN:15227 skipping SAM header line: @SQ SN:PGA_scaffold39322__1_contigs__length_12952 LN:12952 skipping SAM header line: @SQ SN:PGA_scaffold39324__1_contigs__length_13560 LN:13560 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold39348__1_contigs__length_10355 LN:10355 skipping SAM header line: @SQ SN:PGA_scaffold39349__1_contigs__length_30049 LN:30049 skipping SAM header line: @SQ SN:PGA_scaffold39350__1_contigs__length_17650 LN:17650 skipping SAM header line: @SQ SN:PGA_scaffold39351__1_contigs__length_10146 LN:10146 skipping SAM header line: @SQ SN:PGA_scaffold39352__1_contigs__length_11293 LN:11293 skipping SAM header line: @SQ SN:PGA_scaffold39354__1_contigs__length_20661 LN:20661 skipping SAM header line: @SQ SN:PGA_scaffold39356__1_contigs__length_12447 LN:12447 skipping SAM header line: @SQ SN:PGA_scaffold39361__1_contigs__length_18691 LN:18691 skipping SAM header line: @SQ SN:PGA_scaffold39362__1_contigs__length_10828 LN:10828 skipping SAM header line: @SQ SN:PGA_scaffold39363__1_contigs__length_13267 LN:13267 skipping SAM header line: @SQ SN:PGA_scaffold39365__1_contigs__length_13870 LN:13870 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold39997__1_contigs__length_10540 LN:10540 skipping SAM header line: @SQ SN:PGA_scaffold40062__1_contigs__length_10248 LN:10248 skipping SAM header line: @SQ SN:PGA_scaffold40116__1_contigs__length_11099 LN:11099 skipping SAM header line: @SQ SN:PGA_scaffold40121__1_contigs__length_10269 LN:10269 skipping SAM header line: @SQ SN:PGA_scaffold40139__1_contigs__length_11075 LN:11075 skipping SAM header line: @SQ SN:PGA_scaffold40184__1_contigs__length_10135 LN:10135 skipping SAM header line: @SQ SN:PGA_scaffold40217__1_contigs__length_11787 LN:11787 skipping SAM header line: @SQ SN:PGA_scaffold40327__1_contigs__length_10663 LN:10663 skipping SAM header line: @SQ SN:PGA_scaffold40379__1_contigs__length_10586 LN:10586 skipping SAM header line: @SQ SN:PGA_scaffold40398__1_contigs__length_10637 LN:10637 skipping SAM header line: @SQ SN:PGA_scaffold40470__1_contigs__length_10525 LN:10525 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold40695__1_contigs__length_10766 LN:10766 skipping SAM header line: @SQ SN:PGA_scaffold40708__1_contigs__length_11498 LN:11498 skipping SAM header line: @SQ SN:PGA_scaffold40737__1_contigs__length_11404 LN:11404 skipping SAM header line: @SQ SN:PGA_scaffold40799__1_contigs__length_10762 LN:10762 skipping SAM header line: @SQ SN:PGA_scaffold40806__1_contigs__length_11096 LN:11096 skipping SAM header line: @SQ SN:PGA_scaffold40840__1_contigs__length_10424 LN:10424 skipping SAM header line: @SQ SN:PGA_scaffold40859__1_contigs__length_10773 LN:10773 skipping SAM header line: @SQ SN:PGA_scaffold40865__1_contigs__length_11934 LN:11934 skipping SAM header line: @SQ SN:PGA_scaffold40877__1_contigs__length_14362 LN:14362 skipping SAM header line: @SQ SN:PGA_scaffold40884__1_contigs__length_13827 LN:13827 skipping SAM header line: @SQ SN:PGA_scaffold40889__1_contigs__length_13070 LN:13070 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold42351__1_contigs__length_13553 LN:13553 skipping SAM header line: @SQ SN:PGA_scaffold42382__1_contigs__length_13571 LN:13571 skipping SAM header line: @SQ SN:PGA_scaffold42499__1_contigs__length_10579 LN:10579 skipping SAM header line: @SQ SN:PGA_scaffold42541__1_contigs__length_10935 LN:10935 skipping SAM header line: @SQ SN:PGA_scaffold42577__1_contigs__length_10955 LN:10955 skipping SAM header line: @SQ SN:PGA_scaffold42631__1_contigs__length_19328 LN:19328 skipping SAM header line: @SQ SN:PGA_scaffold42663__1_contigs__length_12031 LN:12031 skipping SAM header line: @SQ SN:PGA_scaffold42666__1_contigs__length_19166 LN:19166 skipping SAM header line: @SQ SN:PGA_scaffold42679__1_contigs__length_15354 LN:15354 skipping SAM header line: @SQ SN:PGA_scaffold42723__1_contigs__length_15268 LN:15268 skipping SAM header line: @SQ SN:PGA_scaffold42731__1_contigs__length_22049 LN:22049 skipping SAM header line: @SQ SN:PGA_scaffold42770__1_contigs__length_15243 LN:15243 skipping SAM header line: @SQ SN:PGA_scaffold42779__1_contigs__length_35983 LN:35983 skipping SAM header line: @SQ SN:PGA_scaffold42780__1_contigs__length_33043 LN:33043 skipping SAM header line: @SQ SN:PGA_scaffold42781__1_contigs__length_11713 LN:11713 skipping SAM header line: @SQ SN:PGA_scaffold42797__1_contigs__length_15623 LN:15623 skipping SAM header line: @SQ SN:PGA_scaffold42809__1_contigs__length_10042 LN:10042 skipping SAM header line: @SQ SN:PGA_scaffold42814__1_contigs__length_13257 LN:13257 skipping SAM header line: @SQ SN:PGA_scaffold42847__1_contigs__length_13209 LN:13209 skipping SAM header line: @SQ SN:PGA_scaffold42854__1_contigs__length_23923 LN:23923 skipping SAM header line: @SQ SN:PGA_scaffold42864__1_contigs__length_11976 LN:11976 skipping SAM header line: @SQ SN:PGA_scaffold42885__1_contigs__length_20310 LN:20310 skipping SAM header line: @SQ SN:PGA_scaffold42905__1_contigs__length_11177 LN:11177 skipping SAM header line: @SQ SN:PGA_scaffold42906__1_contigs__length_11103 LN:11103 skipping SAM header line: @SQ SN:PGA_scaffold42918__1_contigs__length_14826 LN:14826 skipping SAM header line: @SQ SN:PGA_scaffold42929__1_contigs__length_13253 LN:13253 skipping SAM header line: @SQ SN:PGA_scaffold42946__1_contigs__length_15943 LN:15943 skipping SAM header line: @SQ SN:PGA_scaffold42947__1_contigs__length_15502 LN:15502 skipping SAM header line: @SQ SN:PGA_scaffold42948__1_contigs__length_15606 LN:15606 skipping SAM header line: @SQ SN:PGA_scaffold42951__1_contigs__length_21343 LN:21343 skipping SAM header line: @SQ SN:PGA_scaffold42953__1_contigs__length_11057 LN:11057 skipping SAM header line: @SQ SN:PGA_scaffold42964__1_contigs__length_11968 LN:11968 skipping SAM header line: @SQ SN:PGA_scaffold42978__1_contigs__length_14328 LN:14328 skipping SAM header line: @SQ SN:PGA_scaffold43005__1_contigs__length_13267 LN:13267 skipping SAM header line: @SQ SN:PGA_scaffold43014__1_contigs__length_17922 LN:17922 skipping SAM header line: @SQ SN:PGA_scaffold43016__1_contigs__length_11294 LN:11294 skipping SAM header line: @SQ SN:PGA_scaffold43022__1_contigs__length_15091 LN:15091 skipping SAM header line: @SQ SN:PGA_scaffold43025__1_contigs__length_11714 LN:11714 skipping SAM header line: @SQ SN:PGA_scaffold43046__1_contigs__length_12323 LN:12323 skipping SAM header line: @SQ SN:PGA_scaffold43047__1_contigs__length_10772 LN:10772 skipping SAM header line: @SQ SN:PGA_scaffold43053__1_contigs__length_18163 LN:18163 skipping SAM header line: @SQ SN:PGA_scaffold43062__1_contigs__length_11208 LN:11208 skipping SAM header line: @SQ SN:PGA_scaffold43063__1_contigs__length_32087 LN:32087 skipping SAM header line: @SQ SN:PGA_scaffold43069__1_contigs__length_12840 LN:12840 skipping SAM header line: @SQ SN:PGA_scaffold43073__1_contigs__length_10284 LN:10284 skipping SAM header line: @SQ SN:PGA_scaffold43078__1_contigs__length_10604 LN:10604 skipping SAM header line: @SQ SN:PGA_scaffold43079__1_contigs__length_15800 LN:15800 skipping SAM header line: @SQ SN:PGA_scaffold43088__1_contigs__length_19239 LN:19239 skipping SAM header line: @SQ SN:PGA_scaffold43092__1_contigs__length_11885 LN:11885 skipping SAM header line: @SQ SN:PGA_scaffold43093__1_contigs__length_14785 LN:14785 skipping SAM header line: @SQ SN:PGA_scaffold43102__1_contigs__length_16444 LN:16444 skipping SAM header line: @SQ SN:PGA_scaffold43110__1_contigs__length_10712 LN:10712 skipping SAM header line: @SQ SN:PGA_scaffold43118__1_contigs__length_12594 LN:12594 skipping SAM header line: @SQ SN:PGA_scaffold43126__1_contigs__length_17498 LN:17498 skipping SAM header line: @SQ SN:PGA_scaffold43127__1_contigs__length_10416 LN:10416 skipping SAM header line: @SQ SN:PGA_scaffold43148__1_contigs__length_16405 LN:16405 skipping SAM header line: @SQ SN:PGA_scaffold43153__1_contigs__length_12402 LN:12402 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold43322__1_contigs__length_16910 LN:16910 skipping SAM header line: @SQ SN:PGA_scaffold43349__1_contigs__length_21587 LN:21587 skipping SAM header line: @SQ SN:PGA_scaffold43350__1_contigs__length_11858 LN:11858 skipping SAM header line: @SQ SN:PGA_scaffold43351__1_contigs__length_14334 LN:14334 skipping SAM header line: @SQ SN:PGA_scaffold43362__1_contigs__length_13786 LN:13786 skipping SAM header line: @SQ SN:PGA_scaffold43368__1_contigs__length_17068 LN:17068 skipping SAM header line: @SQ SN:PGA_scaffold43427__1_contigs__length_11254 LN:11254 skipping SAM header line: @SQ SN:PGA_scaffold43447__1_contigs__length_11811 LN:11811 skipping SAM header line: @SQ SN:PGA_scaffold43458__1_contigs__length_21874 LN:21874 skipping SAM header line: @SQ SN:PGA_scaffold43479__1_contigs__length_10656 LN:10656 skipping SAM header line: @SQ SN:PGA_scaffold43483__1_contigs__length_15611 LN:15611 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold43611__1_contigs__length_18859 LN:18859 skipping SAM header line: @SQ SN:PGA_scaffold43613__1_contigs__length_11497 LN:11497 skipping SAM header line: @SQ SN:PGA_scaffold43626__1_contigs__length_17505 LN:17505 skipping SAM header line: @SQ SN:PGA_scaffold43638__1_contigs__length_11681 LN:11681 skipping SAM header line: @SQ SN:PGA_scaffold43645__1_contigs__length_10534 LN:10534 skipping SAM header line: @SQ SN:PGA_scaffold43658__1_contigs__length_14839 LN:14839 skipping SAM header line: @SQ SN:PGA_scaffold43660__1_contigs__length_11361 LN:11361 skipping SAM header line: @SQ SN:PGA_scaffold43663__1_contigs__length_12377 LN:12377 skipping SAM header line: @SQ SN:PGA_scaffold43665__1_contigs__length_20432 LN:20432 skipping SAM header line: @SQ SN:PGA_scaffold43666__1_contigs__length_22664 LN:22664 skipping SAM header line: @SQ SN:PGA_scaffold43667__1_contigs__length_12340 LN:12340 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold43721__1_contigs__length_10937 LN:10937 skipping SAM header line: @SQ SN:PGA_scaffold43723__1_contigs__length_13877 LN:13877 skipping SAM header line: @SQ SN:PGA_scaffold43730__1_contigs__length_14721 LN:14721 skipping SAM header line: @SQ SN:PGA_scaffold43731__1_contigs__length_16151 LN:16151 skipping SAM header line: @SQ SN:PGA_scaffold43732__1_contigs__length_10573 LN:10573 skipping SAM header line: @SQ SN:PGA_scaffold43736__1_contigs__length_10703 LN:10703 skipping SAM header line: @SQ SN:PGA_scaffold43738__1_contigs__length_12534 LN:12534 skipping SAM header line: @SQ SN:PGA_scaffold43745__1_contigs__length_11280 LN:11280 skipping SAM header line: @SQ SN:PGA_scaffold43746__1_contigs__length_20301 LN:20301 skipping SAM header line: @SQ SN:PGA_scaffold43749__1_contigs__length_12478 LN:12478 skipping SAM header line: @SQ SN:PGA_scaffold43752__1_contigs__length_19985 LN:19985 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold44021__1_contigs__length_51740 LN:51740 skipping SAM header line: @SQ SN:PGA_scaffold44022__1_contigs__length_41140 LN:41140 skipping SAM header line: @SQ SN:PGA_scaffold44023__1_contigs__length_16536 LN:16536 skipping SAM header line: @SQ SN:PGA_scaffold44025__1_contigs__length_11342 LN:11342 skipping SAM header line: @SQ SN:PGA_scaffold44033__1_contigs__length_12362 LN:12362 skipping SAM header line: @SQ SN:PGA_scaffold44034__1_contigs__length_18801 LN:18801 skipping SAM header line: @SQ SN:PGA_scaffold44036__1_contigs__length_19269 LN:19269 skipping SAM header line: @SQ SN:PGA_scaffold44041__1_contigs__length_18674 LN:18674 skipping SAM header line: @SQ SN:PGA_scaffold44043__1_contigs__length_15224 LN:15224 skipping SAM header line: @SQ SN:PGA_scaffold44044__1_contigs__length_12177 LN:12177 skipping SAM header line: @SQ SN:PGA_scaffold44045__1_contigs__length_21339 LN:21339 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold44113__1_contigs__length_30304 LN:30304 skipping SAM header line: @SQ SN:PGA_scaffold44114__1_contigs__length_15123 LN:15123 skipping SAM header line: @SQ SN:PGA_scaffold44116__1_contigs__length_16230 LN:16230 skipping SAM header line: @SQ SN:PGA_scaffold44119__1_contigs__length_18758 LN:18758 skipping SAM header line: @SQ SN:PGA_scaffold44126__1_contigs__length_14303 LN:14303 skipping SAM header line: @SQ SN:PGA_scaffold44134__1_contigs__length_10458 LN:10458 skipping SAM header line: @SQ SN:PGA_scaffold44142__1_contigs__length_10300 LN:10300 skipping SAM header line: @SQ SN:PGA_scaffold44166__1_contigs__length_10225 LN:10225 skipping SAM header line: @SQ SN:PGA_scaffold44167__1_contigs__length_18107 LN:18107 skipping SAM header line: @SQ SN:PGA_scaffold44187__1_contigs__length_13695 LN:13695 skipping SAM header line: @SQ SN:PGA_scaffold44204__1_contigs__length_11957 LN:11957 skipping SAM header line: @SQ SN:PGA_scaffold44207__1_contigs__length_13803 LN:13803 skipping SAM header line: @SQ SN:PGA_scaffold44212__1_contigs__length_16281 LN:16281 skipping SAM header line: @SQ SN:PGA_scaffold44214__1_contigs__length_13281 LN:13281 skipping SAM header line: @SQ SN:PGA_scaffold44217__1_contigs__length_19021 LN:19021 skipping SAM header line: @SQ SN:PGA_scaffold44220__1_contigs__length_10067 LN:10067 skipping SAM header line: @SQ SN:PGA_scaffold44223__1_contigs__length_15895 LN:15895 skipping SAM header line: @SQ SN:PGA_scaffold44246__1_contigs__length_16550 LN:16550 skipping SAM header line: @SQ SN:PGA_scaffold44267__1_contigs__length_13671 LN:13671 skipping SAM header line: @SQ SN:PGA_scaffold44278__1_contigs__length_10571 LN:10571 skipping SAM header line: @SQ SN:PGA_scaffold44279__1_contigs__length_11233 LN:11233 skipping SAM header line: @SQ SN:PGA_scaffold44285__1_contigs__length_11408 LN:11408 skipping SAM header line: @SQ SN:PGA_scaffold44287__1_contigs__length_54447 LN:54447 skipping SAM header line: @SQ SN:PGA_scaffold44288__1_contigs__length_13802 LN:13802 skipping SAM header line: @SQ SN:PGA_scaffold44289__1_contigs__length_12854 LN:12854 skipping SAM header line: @SQ SN:PGA_scaffold44290__1_contigs__length_14814 LN:14814 skipping SAM header line: @SQ SN:PGA_scaffold44291__1_contigs__length_14610 LN:14610 skipping SAM header line: @SQ SN:PGA_scaffold44293__1_contigs__length_18891 LN:18891 skipping SAM header line: @SQ SN:PGA_scaffold44296__1_contigs__length_15650 LN:15650 skipping SAM header line: @SQ SN:PGA_scaffold44298__1_contigs__length_19239 LN:19239 skipping SAM header line: @SQ SN:PGA_scaffold44299__1_contigs__length_12850 LN:12850 skipping SAM header line: @SQ SN:PGA_scaffold44301__1_contigs__length_23173 LN:23173 skipping SAM header line: @SQ SN:PGA_scaffold44303__1_contigs__length_14674 LN:14674 skipping SAM header line: @SQ SN:PGA_scaffold44304__1_contigs__length_13443 LN:13443 skipping SAM header line: @SQ SN:PGA_scaffold44306__1_contigs__length_21975 LN:21975 skipping SAM header line: @SQ SN:PGA_scaffold44307__1_contigs__length_15746 LN:15746 skipping SAM header line: @SQ SN:PGA_scaffold44309__1_contigs__length_12292 LN:12292 skipping SAM header line: @SQ SN:PGA_scaffold44310__1_contigs__length_20316 LN:20316 skipping SAM header line: @SQ SN:PGA_scaffold44323__1_contigs__length_10694 LN:10694 skipping SAM header line: @SQ SN:PGA_scaffold44331__1_contigs__length_10587 LN:10587 skipping SAM header line: @SQ SN:PGA_scaffold44349__1_contigs__length_19482 LN:19482 skipping SAM header line: @SQ SN:PGA_scaffold44358__1_contigs__length_10212 LN:10212 skipping SAM header line: @SQ SN:PGA_scaffold44367__1_contigs__length_10918 LN:10918 skipping SAM header line: @SQ SN:PGA_scaffold44428__1_contigs__length_11212 LN:11212 skipping SAM header line: @SQ SN:PGA_scaffold44435__1_contigs__length_10955 LN:10955 skipping SAM header line: @SQ SN:PGA_scaffold44443__1_contigs__length_11746 LN:11746 skipping SAM header line: @SQ SN:PGA_scaffold44512__1_contigs__length_10909 LN:10909 skipping SAM header line: @SQ SN:PGA_scaffold44523__1_contigs__length_11110 LN:11110 skipping SAM header line: @SQ SN:PGA_scaffold44537__1_contigs__length_11402 LN:11402 skipping SAM header line: @SQ SN:PGA_scaffold44596__1_contigs__length_10416 LN:10416 skipping SAM header line: @SQ SN:PGA_scaffold44611__1_contigs__length_11184 LN:11184 skipping SAM header line: @SQ SN:PGA_scaffold44620__1_contigs__length_10241 LN:10241 skipping SAM header line: @SQ SN:PGA_scaffold44660__1_contigs__length_10997 LN:10997 skipping SAM header line: @SQ SN:PGA_scaffold44688__1_contigs__length_12099 LN:12099 skipping SAM header line: @SQ SN:PGA_scaffold44701__1_contigs__length_10934 LN:10934 skipping SAM header line: @SQ SN:PGA_scaffold44728__1_contigs__length_11607 LN:11607 skipping SAM header line: @SQ SN:PGA_scaffold44732__1_contigs__length_10632 LN:10632 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold44935__1_contigs__length_10080 LN:10080 skipping SAM header line: @SQ SN:PGA_scaffold44951__1_contigs__length_11326 LN:11326 skipping SAM header line: @SQ SN:PGA_scaffold44953__1_contigs__length_11281 LN:11281 skipping SAM header line: @SQ SN:PGA_scaffold44954__1_contigs__length_10409 LN:10409 skipping SAM header line: @SQ SN:PGA_scaffold44957__1_contigs__length_10983 LN:10983 skipping SAM header line: @SQ SN:PGA_scaffold44959__1_contigs__length_10843 LN:10843 skipping SAM header line: @SQ SN:PGA_scaffold44966__1_contigs__length_11506 LN:11506 skipping SAM header line: @SQ SN:PGA_scaffold44967__1_contigs__length_29287 LN:29287 skipping SAM header line: @SQ SN:PGA_scaffold44968__1_contigs__length_10231 LN:10231 skipping SAM header line: @SQ SN:PGA_scaffold44969__1_contigs__length_31983 LN:31983 skipping SAM header line: @SQ SN:PGA_scaffold44970__1_contigs__length_25060 LN:25060 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold45008__1_contigs__length_12951 LN:12951 skipping SAM header line: @SQ SN:PGA_scaffold45013__1_contigs__length_13121 LN:13121 skipping SAM header line: @SQ SN:PGA_scaffold45030__1_contigs__length_42687 LN:42687 skipping SAM header line: @SQ SN:PGA_scaffold45031__1_contigs__length_14620 LN:14620 skipping SAM header line: @SQ SN:PGA_scaffold45039__1_contigs__length_54558 LN:54558 skipping SAM header line: @SQ SN:PGA_scaffold45040__1_contigs__length_22507 LN:22507 skipping SAM header line: @SQ SN:PGA_scaffold45044__1_contigs__length_42665 LN:42665 skipping SAM header line: @SQ SN:PGA_scaffold45047__1_contigs__length_22332 LN:22332 skipping SAM header line: @SQ SN:PGA_scaffold45049__1_contigs__length_14791 LN:14791 skipping SAM header line: @SQ SN:PGA_scaffold45054__1_contigs__length_10631 LN:10631 skipping SAM header line: @SQ SN:PGA_scaffold45059__1_contigs__length_11628 LN:11628 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold45175__1_contigs__length_12339 LN:12339 skipping SAM header line: @SQ SN:PGA_scaffold45182__1_contigs__length_13821 LN:13821 skipping SAM header line: @SQ SN:PGA_scaffold45183__1_contigs__length_18254 LN:18254 skipping SAM header line: @SQ SN:PGA_scaffold45185__1_contigs__length_14560 LN:14560 skipping SAM header line: @SQ SN:PGA_scaffold45193__1_contigs__length_10659 LN:10659 skipping SAM header line: @SQ SN:PGA_scaffold45199__1_contigs__length_15458 LN:15458 skipping SAM header line: @SQ SN:PGA_scaffold45217__1_contigs__length_13786 LN:13786 skipping SAM header line: @SQ SN:PGA_scaffold45221__1_contigs__length_11014 LN:11014 skipping SAM header line: @SQ SN:PGA_scaffold45237__1_contigs__length_21705 LN:21705 skipping SAM header line: @SQ SN:PGA_scaffold45246__1_contigs__length_20156 LN:20156 skipping SAM header line: @SQ SN:PGA_scaffold45252__1_contigs__length_12204 LN:12204 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold45389__1_contigs__length_20491 LN:20491 skipping SAM header line: @SQ SN:PGA_scaffold45390__1_contigs__length_14774 LN:14774 skipping SAM header line: @SQ SN:PGA_scaffold45411__1_contigs__length_12224 LN:12224 skipping SAM header line: @SQ SN:PGA_scaffold45412__1_contigs__length_12664 LN:12664 skipping SAM header line: @SQ SN:PGA_scaffold45486__1_contigs__length_25222 LN:25222 skipping SAM header line: @SQ SN:PGA_scaffold45503__1_contigs__length_15625 LN:15625 skipping SAM header line: @SQ SN:PGA_scaffold45511__1_contigs__length_14589 LN:14589 skipping SAM header line: @SQ SN:PGA_scaffold45516__1_contigs__length_10508 LN:10508 skipping SAM header line: @SQ SN:PGA_scaffold45521__1_contigs__length_10438 LN:10438 skipping SAM header line: @SQ SN:PGA_scaffold45528__1_contigs__length_15892 LN:15892 skipping SAM header line: @SQ SN:PGA_scaffold45532__1_contigs__length_22958 LN:22958 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold45595__1_contigs__length_16448 LN:16448 skipping SAM header line: @SQ SN:PGA_scaffold45599__1_contigs__length_33507 LN:33507 skipping SAM header line: @SQ SN:PGA_scaffold45601__1_contigs__length_12173 LN:12173 skipping SAM header line: @SQ SN:PGA_scaffold45609__1_contigs__length_12561 LN:12561 skipping SAM header line: @SQ SN:PGA_scaffold45616__1_contigs__length_11740 LN:11740 skipping SAM header line: @SQ SN:PGA_scaffold45618__1_contigs__length_15583 LN:15583 skipping SAM header line: @SQ SN:PGA_scaffold45621__1_contigs__length_37806 LN:37806 skipping SAM header line: @SQ SN:PGA_scaffold45627__1_contigs__length_12583 LN:12583 skipping SAM header line: @SQ SN:PGA_scaffold45633__1_contigs__length_16457 LN:16457 skipping SAM header line: @SQ SN:PGA_scaffold45663__1_contigs__length_10214 LN:10214 skipping SAM header line: @SQ SN:PGA_scaffold45670__1_contigs__length_21879 LN:21879 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold45755__1_contigs__length_21848 LN:21848 skipping SAM header line: @SQ SN:PGA_scaffold45760__1_contigs__length_12457 LN:12457 skipping SAM header line: @SQ SN:PGA_scaffold45762__1_contigs__length_13890 LN:13890 skipping SAM header line: @SQ SN:PGA_scaffold45776__1_contigs__length_11951 LN:11951 skipping SAM header line: @SQ SN:PGA_scaffold45803__1_contigs__length_17472 LN:17472 skipping SAM header line: @SQ SN:PGA_scaffold45814__1_contigs__length_12520 LN:12520 skipping SAM header line: @SQ SN:PGA_scaffold45824__1_contigs__length_17140 LN:17140 skipping SAM header line: @SQ SN:PGA_scaffold45838__1_contigs__length_39783 LN:39783 skipping SAM header line: @SQ SN:PGA_scaffold45839__1_contigs__length_13950 LN:13950 skipping SAM header line: @SQ SN:PGA_scaffold45841__1_contigs__length_13165 LN:13165 skipping SAM header line: @SQ SN:PGA_scaffold45844__1_contigs__length_12309 LN:12309 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold46012__1_contigs__length_16798 LN:16798 skipping SAM header line: @SQ SN:PGA_scaffold46014__1_contigs__length_11679 LN:11679 skipping SAM header line: @SQ SN:PGA_scaffold46015__1_contigs__length_10165 LN:10165 skipping SAM header line: @SQ SN:PGA_scaffold46016__1_contigs__length_47336 LN:47336 skipping SAM header line: @SQ SN:PGA_scaffold46017__1_contigs__length_32344 LN:32344 skipping SAM header line: @SQ SN:PGA_scaffold46018__1_contigs__length_25505 LN:25505 skipping SAM header line: @SQ SN:PGA_scaffold46019__1_contigs__length_10390 LN:10390 skipping SAM header line: @SQ SN:PGA_scaffold46021__1_contigs__length_31410 LN:31410 skipping SAM header line: @SQ SN:PGA_scaffold46022__1_contigs__length_14544 LN:14544 skipping SAM header line: @SQ SN:PGA_scaffold46028__1_contigs__length_15944 LN:15944 skipping SAM header line: @SQ SN:PGA_scaffold46029__1_contigs__length_17875 LN:17875 skipping SAM header line: @SQ SN:PGA_scaffold46030__1_contigs__length_12847 LN:12847 skipping SAM header line: @SQ SN:PGA_scaffold46036__1_contigs__length_13101 LN:13101 skipping SAM header line: @SQ SN:PGA_scaffold46037__1_contigs__length_18863 LN:18863 skipping SAM header line: @SQ SN:PGA_scaffold46041__1_contigs__length_18416 LN:18416 skipping SAM header line: @SQ SN:PGA_scaffold46042__1_contigs__length_13405 LN:13405 skipping SAM header line: @SQ SN:PGA_scaffold46045__1_contigs__length_14866 LN:14866 skipping SAM header line: @SQ SN:PGA_scaffold46049__1_contigs__length_11946 LN:11946 skipping SAM header line: @SQ SN:PGA_scaffold46050__1_contigs__length_13835 LN:13835 skipping SAM header line: @SQ SN:PGA_scaffold46054__1_contigs__length_18433 LN:18433 skipping SAM header line: @SQ SN:PGA_scaffold46063__1_contigs__length_26968 LN:26968 skipping SAM header line: @SQ SN:PGA_scaffold46065__1_contigs__length_14969 LN:14969 skipping SAM header line: @SQ SN:PGA_scaffold46066__1_contigs__length_26528 LN:26528 skipping SAM header line: @SQ SN:PGA_scaffold46071__1_contigs__length_20197 LN:20197 skipping SAM header line: @SQ SN:PGA_scaffold46072__1_contigs__length_10805 LN:10805 skipping SAM header line: @SQ SN:PGA_scaffold46073__1_contigs__length_36458 LN:36458 skipping SAM header line: @SQ SN:PGA_scaffold46074__1_contigs__length_12206 LN:12206 skipping SAM header line: @SQ SN:PGA_scaffold46075__1_contigs__length_16106 LN:16106 skipping SAM header line: @SQ SN:PGA_scaffold46076__1_contigs__length_17750 LN:17750 skipping SAM header line: @SQ SN:PGA_scaffold46077__1_contigs__length_35474 LN:35474 skipping SAM header line: @SQ SN:PGA_scaffold46078__1_contigs__length_20551 LN:20551 skipping SAM header line: @SQ SN:PGA_scaffold46079__1_contigs__length_17646 LN:17646 skipping SAM header line: @SQ SN:PGA_scaffold46080__1_contigs__length_13213 LN:13213 skipping SAM header line: @SQ SN:PGA_scaffold46081__1_contigs__length_11799 LN:11799 skipping SAM header line: @SQ SN:PGA_scaffold46082__1_contigs__length_18907 LN:18907 skipping SAM header line: @SQ SN:PGA_scaffold46083__1_contigs__length_10997 LN:10997 skipping SAM header line: @SQ SN:PGA_scaffold46085__1_contigs__length_10590 LN:10590 skipping SAM header line: @SQ SN:PGA_scaffold46086__1_contigs__length_27650 LN:27650 skipping SAM header line: @SQ SN:PGA_scaffold46087__1_contigs__length_12867 LN:12867 skipping SAM header line: @SQ SN:PGA_scaffold46088__1_contigs__length_19651 LN:19651 skipping SAM header line: @SQ SN:PGA_scaffold46090__1_contigs__length_19063 LN:19063 skipping SAM header line: @SQ SN:PGA_scaffold46091__1_contigs__length_30400 LN:30400 skipping SAM header line: @SQ SN:PGA_scaffold46093__1_contigs__length_14766 LN:14766 skipping SAM header line: @SQ SN:PGA_scaffold46094__1_contigs__length_11199 LN:11199 skipping SAM header line: @SQ SN:PGA_scaffold46100__1_contigs__length_14531 LN:14531 skipping SAM header line: @SQ SN:PGA_scaffold46102__1_contigs__length_10290 LN:10290 skipping SAM header line: @SQ SN:PGA_scaffold46105__1_contigs__length_11384 LN:11384 skipping SAM header line: @SQ SN:PGA_scaffold46106__1_contigs__length_19807 LN:19807 skipping SAM header line: @SQ SN:PGA_scaffold46108__1_contigs__length_30532 LN:30532 skipping SAM header line: @SQ SN:PGA_scaffold46113__1_contigs__length_16988 LN:16988 skipping SAM header line: @SQ SN:PGA_scaffold46117__1_contigs__length_10713 LN:10713 skipping SAM header line: @SQ SN:PGA_scaffold46120__1_contigs__length_18301 LN:18301 skipping SAM header line: @SQ SN:PGA_scaffold46121__1_contigs__length_16139 LN:16139 skipping SAM header line: @SQ SN:PGA_scaffold46123__1_contigs__length_18332 LN:18332 skipping SAM header line: @SQ SN:PGA_scaffold46124__1_contigs__length_11909 LN:11909 skipping SAM header line: @SQ SN:PGA_scaffold46126__1_contigs__length_18377 LN:18377 skipping SAM header line: @SQ SN:PGA_scaffold46129__1_contigs__length_12001 LN:12001 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold46151__1_contigs__length_14283 LN:14283 skipping SAM header line: @SQ SN:PGA_scaffold46154__1_contigs__length_14242 LN:14242 skipping SAM header line: @SQ SN:PGA_scaffold46157__1_contigs__length_21667 LN:21667 skipping SAM header line: @SQ SN:PGA_scaffold46169__1_contigs__length_22331 LN:22331 skipping SAM header line: @SQ SN:PGA_scaffold46171__1_contigs__length_21827 LN:21827 skipping SAM header line: @SQ SN:PGA_scaffold46181__1_contigs__length_22184 LN:22184 skipping SAM header line: @SQ SN:PGA_scaffold46182__1_contigs__length_11626 LN:11626 skipping SAM header line: @SQ SN:PGA_scaffold46197__1_contigs__length_20088 LN:20088 skipping SAM header line: @SQ SN:PGA_scaffold46199__1_contigs__length_12851 LN:12851 skipping SAM header line: @SQ SN:PGA_scaffold46202__1_contigs__length_14389 LN:14389 skipping SAM header line: @SQ SN:PGA_scaffold46203__1_contigs__length_11071 LN:11071 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold46234__1_contigs__length_15864 LN:15864 skipping SAM header line: @SQ SN:PGA_scaffold46235__1_contigs__length_19217 LN:19217 skipping SAM header line: @SQ SN:PGA_scaffold46236__1_contigs__length_17911 LN:17911 skipping SAM header line: @SQ SN:PGA_scaffold46237__1_contigs__length_13624 LN:13624 skipping SAM header line: @SQ SN:PGA_scaffold46238__1_contigs__length_11727 LN:11727 skipping SAM header line: @SQ SN:PGA_scaffold46243__1_contigs__length_12663 LN:12663 skipping SAM header line: @SQ SN:PGA_scaffold46248__1_contigs__length_10878 LN:10878 skipping SAM header line: @SQ SN:PGA_scaffold46267__1_contigs__length_10439 LN:10439 skipping SAM header line: @SQ SN:PGA_scaffold46315__1_contigs__length_11141 LN:11141 skipping SAM header line: @SQ SN:PGA_scaffold46338__1_contigs__length_12063 LN:12063 skipping SAM header line: @SQ SN:PGA_scaffold46398__1_contigs__length_11043 LN:11043 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold46514__1_contigs__length_29144 LN:29144 skipping SAM header line: @SQ SN:PGA_scaffold46515__1_contigs__length_20827 LN:20827 skipping SAM header line: @SQ SN:PGA_scaffold46516__1_contigs__length_19242 LN:19242 skipping SAM header line: @SQ SN:PGA_scaffold46518__1_contigs__length_28451 LN:28451 skipping SAM header line: @SQ SN:PGA_scaffold46519__1_contigs__length_15170 LN:15170 skipping SAM header line: @SQ SN:PGA_scaffold46520__1_contigs__length_20206 LN:20206 skipping SAM header line: @SQ SN:PGA_scaffold46533__1_contigs__length_11798 LN:11798 skipping SAM header line: @SQ SN:PGA_scaffold46536__1_contigs__length_10870 LN:10870 skipping SAM header line: @SQ SN:PGA_scaffold46545__1_contigs__length_15757 LN:15757 skipping SAM header line: @SQ SN:PGA_scaffold46548__1_contigs__length_25958 LN:25958 skipping SAM header line: @SQ SN:PGA_scaffold46550__1_contigs__length_15896 LN:15896 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold48279__1_contigs__length_16998 LN:16998 skipping SAM header line: @SQ SN:PGA_scaffold48280__1_contigs__length_24684 LN:24684 skipping SAM header line: @SQ SN:PGA_scaffold48293__1_contigs__length_11603 LN:11603 skipping SAM header line: @SQ SN:PGA_scaffold48313__1_contigs__length_12292 LN:12292 skipping SAM header line: @SQ SN:PGA_scaffold48318__1_contigs__length_10270 LN:10270 skipping SAM header line: @SQ SN:PGA_scaffold48353__1_contigs__length_26539 LN:26539 skipping SAM header line: @SQ SN:PGA_scaffold48388__1_contigs__length_21018 LN:21018 skipping SAM header line: @SQ SN:PGA_scaffold48390__1_contigs__length_15555 LN:15555 skipping SAM header line: @SQ SN:PGA_scaffold48397__1_contigs__length_20908 LN:20908 skipping SAM header line: @SQ SN:PGA_scaffold48401__1_contigs__length_12900 LN:12900 skipping SAM header line: @SQ SN:PGA_scaffold48409__1_contigs__length_22805 LN:22805 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold48543__1_contigs__length_20149 LN:20149 skipping SAM header line: @SQ SN:PGA_scaffold48554__1_contigs__length_10225 LN:10225 skipping SAM header line: @SQ SN:PGA_scaffold48562__1_contigs__length_15839 LN:15839 skipping SAM header line: @SQ SN:PGA_scaffold48564__1_contigs__length_22614 LN:22614 skipping SAM header line: @SQ SN:PGA_scaffold48624__1_contigs__length_14083 LN:14083 skipping SAM header line: @SQ SN:PGA_scaffold48627__1_contigs__length_30570 LN:30570 skipping SAM header line: @SQ SN:PGA_scaffold48637__1_contigs__length_13369 LN:13369 skipping SAM header line: @SQ SN:PGA_scaffold48653__1_contigs__length_12120 LN:12120 skipping SAM header line: @SQ SN:PGA_scaffold48660__1_contigs__length_28732 LN:28732 skipping SAM header line: @SQ SN:PGA_scaffold48669__1_contigs__length_19903 LN:19903 skipping SAM header line: @SQ SN:PGA_scaffold48675__1_contigs__length_16346 LN:16346 skipping SAM header line: @SQ SN:PGA_scaffold48685__1_contigs__length_11556 LN:11556 skipping SAM header line: @SQ SN:PGA_scaffold48691__1_contigs__length_18673 LN:18673 skipping SAM header line: @SQ SN:PGA_scaffold48700__1_contigs__length_41489 LN:41489 skipping SAM header line: @SQ SN:PGA_scaffold48705__1_contigs__length_11065 LN:11065 skipping SAM header line: @SQ SN:PGA_scaffold48717__1_contigs__length_14294 LN:14294 skipping SAM header line: @SQ SN:PGA_scaffold48722__1_contigs__length_15548 LN:15548 skipping SAM header line: @SQ SN:PGA_scaffold48723__1_contigs__length_10792 LN:10792 skipping SAM header line: @SQ SN:PGA_scaffold48732__1_contigs__length_10281 LN:10281 skipping SAM header line: @SQ SN:PGA_scaffold48775__1_contigs__length_13370 LN:13370 skipping SAM header line: @SQ SN:PGA_scaffold48788__1_contigs__length_20278 LN:20278 skipping SAM header line: @SQ SN:PGA_scaffold48793__1_contigs__length_10915 LN:10915 skipping SAM header line: @SQ SN:PGA_scaffold48813__1_contigs__length_11634 LN:11634 skipping SAM header line: @SQ SN:PGA_scaffold48829__1_contigs__length_16567 LN:16567 skipping SAM header line: @SQ SN:PGA_scaffold48864__1_contigs__length_16258 LN:16258 skipping SAM header line: @SQ SN:PGA_scaffold48872__1_contigs__length_12948 LN:12948 skipping SAM header line: @SQ SN:PGA_scaffold48877__1_contigs__length_10823 LN:10823 skipping SAM header line: @SQ SN:PGA_scaffold48890__1_contigs__length_36820 LN:36820 skipping SAM header line: @SQ SN:PGA_scaffold48895__1_contigs__length_12690 LN:12690 skipping SAM header line: @SQ SN:PGA_scaffold48923__1_contigs__length_11727 LN:11727 skipping SAM header line: @SQ SN:PGA_scaffold48924__1_contigs__length_16360 LN:16360 skipping SAM header line: @SQ SN:PGA_scaffold48925__1_contigs__length_12635 LN:12635 skipping SAM header line: @SQ SN:PGA_scaffold48933__1_contigs__length_12567 LN:12567 skipping SAM header line: @SQ SN:PGA_scaffold48941__1_contigs__length_10438 LN:10438 skipping SAM header line: @SQ SN:PGA_scaffold48945__1_contigs__length_16448 LN:16448 skipping SAM header line: @SQ SN:PGA_scaffold48951__1_contigs__length_15637 LN:15637 skipping SAM header line: @SQ SN:PGA_scaffold48954__1_contigs__length_11575 LN:11575 skipping SAM header line: @SQ SN:PGA_scaffold48967__1_contigs__length_13054 LN:13054 skipping SAM header line: @SQ SN:PGA_scaffold48968__1_contigs__length_26663 LN:26663 skipping SAM header line: @SQ SN:PGA_scaffold48998__1_contigs__length_15833 LN:15833 skipping SAM header line: @SQ SN:PGA_scaffold48999__1_contigs__length_11128 LN:11128 skipping SAM header line: @SQ SN:PGA_scaffold49028__1_contigs__length_11670 LN:11670 skipping SAM header line: @SQ SN:PGA_scaffold49035__1_contigs__length_15036 LN:15036 skipping SAM header line: @SQ SN:PGA_scaffold49040__1_contigs__length_26066 LN:26066 skipping SAM header line: @SQ SN:PGA_scaffold49042__1_contigs__length_13588 LN:13588 skipping SAM header line: @SQ SN:PGA_scaffold49049__1_contigs__length_44862 LN:44862 skipping SAM header line: @SQ SN:PGA_scaffold49052__1_contigs__length_30066 LN:30066 skipping SAM header line: @SQ SN:PGA_scaffold49054__1_contigs__length_10605 LN:10605 skipping SAM header line: @SQ SN:PGA_scaffold49063__1_contigs__length_22723 LN:22723 skipping SAM header line: @SQ SN:PGA_scaffold49065__1_contigs__length_13163 LN:13163 skipping SAM header line: @SQ SN:PGA_scaffold49092__1_contigs__length_17678 LN:17678 skipping SAM header line: @SQ SN:PGA_scaffold49095__1_contigs__length_16585 LN:16585 skipping SAM header line: @SQ SN:PGA_scaffold49096__1_contigs__length_11978 LN:11978 skipping SAM header line: @SQ SN:PGA_scaffold49106__1_contigs__length_12003 LN:12003 skipping SAM header line: @SQ SN:PGA_scaffold49126__1_contigs__length_10162 LN:10162 skipping SAM header line: @SQ SN:PGA_scaffold49133__1_contigs__length_11716 LN:11716 skipping SAM header line: @SQ SN:PGA_scaffold49135__1_contigs__length_12499 LN:12499 skipping SAM header line: @SQ SN:PGA_scaffold49139__1_contigs__length_23442 LN:23442 skipping SAM header line: @SQ SN:PGA_scaffold49140__1_contigs__length_41465 LN:41465 skipping SAM header line: @SQ SN:PGA_scaffold49158__1_contigs__length_11883 LN:11883 skipping SAM header line: @SQ SN:PGA_scaffold49161__1_contigs__length_11526 LN:11526 skipping SAM header line: @SQ SN:PGA_scaffold49162__1_contigs__length_12070 LN:12070 skipping SAM header line: @SQ SN:PGA_scaffold49164__1_contigs__length_16303 LN:16303 skipping SAM header line: @SQ SN:PGA_scaffold49165__1_contigs__length_22310 LN:22310 skipping SAM header line: @SQ SN:PGA_scaffold49167__1_contigs__length_20560 LN:20560 skipping SAM header line: @SQ SN:PGA_scaffold49174__1_contigs__length_12969 LN:12969 skipping SAM header line: @SQ SN:PGA_scaffold49175__1_contigs__length_28691 LN:28691 skipping SAM header line: @SQ SN:PGA_scaffold49186__1_contigs__length_11971 LN:11971 skipping SAM header line: @SQ SN:PGA_scaffold49191__1_contigs__length_10824 LN:10824 skipping SAM header line: @SQ SN:PGA_scaffold49194__1_contigs__length_29168 LN:29168 skipping SAM header line: @SQ SN:PGA_scaffold49200__1_contigs__length_15006 LN:15006 skipping SAM header line: @SQ SN:PGA_scaffold49209__1_contigs__length_10515 LN:10515 skipping SAM header line: @SQ SN:PGA_scaffold49210__1_contigs__length_13683 LN:13683 skipping SAM header line: @SQ SN:PGA_scaffold49211__1_contigs__length_11356 LN:11356 skipping SAM header line: @SQ SN:PGA_scaffold49221__1_contigs__length_14192 LN:14192 skipping SAM header line: @SQ SN:PGA_scaffold49224__1_contigs__length_19858 LN:19858 skipping SAM header line: @SQ SN:PGA_scaffold49226__1_contigs__length_27352 LN:27352 skipping SAM header line: @SQ SN:PGA_scaffold49229__1_contigs__length_10015 LN:10015 skipping SAM header line: @SQ SN:PGA_scaffold49232__1_contigs__length_11940 LN:11940 skipping SAM header line: @SQ SN:PGA_scaffold49234__1_contigs__length_12806 LN:12806 skipping SAM header line: @SQ SN:PGA_scaffold49236__1_contigs__length_17279 LN:17279 skipping SAM header line: @SQ SN:PGA_scaffold49239__1_contigs__length_15724 LN:15724 skipping SAM header line: @SQ SN:PGA_scaffold49240__1_contigs__length_15576 LN:15576 skipping SAM header line: @SQ SN:PGA_scaffold49253__1_contigs__length_11797 LN:11797 skipping SAM header line: @SQ SN:PGA_scaffold49255__1_contigs__length_12863 LN:12863 skipping SAM header line: @SQ SN:PGA_scaffold49256__1_contigs__length_10395 LN:10395 skipping SAM header line: @SQ SN:PGA_scaffold49257__1_contigs__length_26558 LN:26558 skipping SAM header line: @SQ SN:PGA_scaffold49259__1_contigs__length_12333 LN:12333 skipping SAM header line: @SQ SN:PGA_scaffold49266__1_contigs__length_11576 LN:11576 skipping SAM header line: @SQ SN:PGA_scaffold49268__1_contigs__length_12961 LN:12961 skipping SAM header line: @SQ SN:PGA_scaffold49269__1_contigs__length_58629 LN:58629 skipping SAM header line: @SQ SN:PGA_scaffold49272__1_contigs__length_48462 LN:48462 skipping SAM header line: @SQ SN:PGA_scaffold49286__1_contigs__length_32480 LN:32480 skipping SAM header line: @SQ SN:PGA_scaffold49289__1_contigs__length_10153 LN:10153 skipping SAM header line: @SQ SN:PGA_scaffold49291__1_contigs__length_14827 LN:14827 skipping SAM header line: @SQ SN:PGA_scaffold49292__1_contigs__length_14774 LN:14774 skipping SAM header line: @SQ SN:PGA_scaffold49294__1_contigs__length_18010 LN:18010 skipping SAM header line: @SQ SN:PGA_scaffold49299__1_contigs__length_13447 LN:13447 skipping SAM header line: @SQ SN:PGA_scaffold49300__1_contigs__length_12202 LN:12202 skipping SAM header line: @SQ SN:PGA_scaffold49301__1_contigs__length_13741 LN:13741 skipping SAM header line: @SQ SN:PGA_scaffold49303__1_contigs__length_16903 LN:16903 skipping SAM header line: @SQ SN:PGA_scaffold49304__1_contigs__length_16169 LN:16169 skipping SAM header line: @SQ SN:PGA_scaffold49308__1_contigs__length_10000 LN:10000 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold49340__1_contigs__length_11653 LN:11653 skipping SAM header line: @SQ SN:PGA_scaffold49343__1_contigs__length_14077 LN:14077 skipping SAM header line: @SQ SN:PGA_scaffold49344__1_contigs__length_12943 LN:12943 skipping SAM header line: @SQ SN:PGA_scaffold49345__1_contigs__length_12605 LN:12605 skipping SAM header line: @SQ SN:PGA_scaffold49352__1_contigs__length_23523 LN:23523 skipping SAM header line: @SQ SN:PGA_scaffold49353__1_contigs__length_13813 LN:13813 skipping SAM header line: @SQ SN:PGA_scaffold49356__1_contigs__length_13075 LN:13075 skipping SAM header line: @SQ SN:PGA_scaffold49369__1_contigs__length_25275 LN:25275 skipping SAM header line: @SQ SN:PGA_scaffold49375__1_contigs__length_11795 LN:11795 skipping SAM header line: @SQ SN:PGA_scaffold49379__1_contigs__length_17801 LN:17801 skipping SAM header line: @SQ SN:PGA_scaffold49382__1_contigs__length_25798 LN:25798 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold49433__1_contigs__length_36204 LN:36204 skipping SAM header line: @SQ SN:PGA_scaffold49445__1_contigs__length_14106 LN:14106 skipping SAM header line: @SQ SN:PGA_scaffold49448__1_contigs__length_40249 LN:40249 skipping SAM header line: @SQ SN:PGA_scaffold49449__1_contigs__length_18050 LN:18050 skipping SAM header line: @SQ SN:PGA_scaffold49468__1_contigs__length_11238 LN:11238 skipping SAM header line: @SQ SN:PGA_scaffold49470__1_contigs__length_21592 LN:21592 skipping SAM header line: @SQ SN:PGA_scaffold49475__1_contigs__length_13623 LN:13623 skipping SAM header line: @SQ SN:PGA_scaffold49477__1_contigs__length_16313 LN:16313 skipping SAM header line: @SQ SN:PGA_scaffold49484__1_contigs__length_17047 LN:17047 skipping SAM header line: @SQ SN:PGA_scaffold49503__1_contigs__length_15132 LN:15132 skipping SAM header line: @SQ SN:PGA_scaffold49529__1_contigs__length_16573 LN:16573 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold49602__1_contigs__length_12859 LN:12859 skipping SAM header line: @SQ SN:PGA_scaffold49604__1_contigs__length_19647 LN:19647 skipping SAM header line: @SQ SN:PGA_scaffold49605__1_contigs__length_16703 LN:16703 skipping SAM header line: @SQ SN:PGA_scaffold49606__1_contigs__length_19010 LN:19010 skipping SAM header line: @SQ SN:PGA_scaffold49607__1_contigs__length_13388 LN:13388 skipping SAM header line: @SQ SN:PGA_scaffold49608__1_contigs__length_10166 LN:10166 skipping SAM header line: @SQ SN:PGA_scaffold49609__1_contigs__length_30653 LN:30653 skipping SAM header line: @SQ SN:PGA_scaffold49611__1_contigs__length_20718 LN:20718 skipping SAM header line: @SQ SN:PGA_scaffold49612__1_contigs__length_15043 LN:15043 skipping SAM header line: @SQ SN:PGA_scaffold49614__1_contigs__length_16089 LN:16089 skipping SAM header line: @SQ SN:PGA_scaffold49617__1_contigs__length_24466 LN:24466 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold49715__1_contigs__length_10100 LN:10100 skipping SAM header line: @SQ SN:PGA_scaffold49726__1_contigs__length_15636 LN:15636 skipping SAM header line: @SQ SN:PGA_scaffold49846__1_contigs__length_10561 LN:10561 skipping SAM header line: @SQ SN:PGA_scaffold49889__1_contigs__length_10599 LN:10599 skipping SAM header line: @SQ SN:PGA_scaffold49901__1_contigs__length_11073 LN:11073 skipping SAM header line: @SQ SN:PGA_scaffold50029__1_contigs__length_10771 LN:10771 skipping SAM header line: @SQ SN:PGA_scaffold50066__1_contigs__length_10012 LN:10012 skipping SAM header line: @SQ SN:PGA_scaffold50112__1_contigs__length_10411 LN:10411 skipping SAM header line: @SQ SN:PGA_scaffold50128__1_contigs__length_10295 LN:10295 skipping SAM header line: @SQ SN:PGA_scaffold50133__1_contigs__length_10632 LN:10632 skipping SAM header line: @SQ SN:PGA_scaffold50143__1_contigs__length_11444 LN:11444 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold50271__1_contigs__length_17994 LN:17994 skipping SAM header line: @SQ SN:PGA_scaffold50281__1_contigs__length_21006 LN:21006 skipping SAM header line: @SQ SN:PGA_scaffold50283__1_contigs__length_15451 LN:15451 skipping SAM header line: @SQ SN:PGA_scaffold50292__1_contigs__length_13547 LN:13547 skipping SAM header line: @SQ SN:PGA_scaffold50296__1_contigs__length_19149 LN:19149 skipping SAM header line: @SQ SN:PGA_scaffold50297__1_contigs__length_13195 LN:13195 skipping SAM header line: @SQ SN:PGA_scaffold50303__1_contigs__length_26508 LN:26508 skipping SAM header line: @SQ SN:PGA_scaffold50313__1_contigs__length_12333 LN:12333 skipping SAM header line: @SQ SN:PGA_scaffold50319__1_contigs__length_18960 LN:18960 skipping SAM header line: @SQ SN:PGA_scaffold50321__1_contigs__length_11507 LN:11507 skipping SAM header line: @SQ SN:PGA_scaffold50335__1_contigs__length_43040 LN:43040 skipping SAM header line: @SQ SN:PGA_scaffold50338__1_contigs__length_12204 LN:12204 skipping SAM header line: @SQ SN:PGA_scaffold50346__1_contigs__length_13417 LN:13417 skipping SAM header line: @SQ SN:PGA_scaffold50347__1_contigs__length_16084 LN:16084 skipping SAM header line: @SQ SN:PGA_scaffold50350__1_contigs__length_11823 LN:11823 skipping SAM header line: @SQ SN:PGA_scaffold50352__1_contigs__length_20350 LN:20350 skipping SAM header line: @SQ SN:PGA_scaffold50353__1_contigs__length_13347 LN:13347 skipping SAM header line: @SQ SN:PGA_scaffold50355__1_contigs__length_13230 LN:13230 skipping SAM header line: @SQ SN:PGA_scaffold50357__1_contigs__length_13354 LN:13354 skipping SAM header line: @SQ SN:PGA_scaffold50358__1_contigs__length_12099 LN:12099 skipping SAM header line: @SQ SN:PGA_scaffold50359__1_contigs__length_13686 LN:13686 skipping SAM header line: @SQ SN:PGA_scaffold50361__1_contigs__length_12083 LN:12083 skipping SAM header line: @SQ SN:PGA_scaffold50362__1_contigs__length_17907 LN:17907 skipping SAM header line: @SQ SN:PGA_scaffold50365__1_contigs__length_11162 LN:11162 skipping SAM header line: @SQ SN:PGA_scaffold50399__1_contigs__length_10139 LN:10139 skipping SAM header line: @SQ SN:PGA_scaffold50406__1_contigs__length_18588 LN:18588 skipping SAM header line: @SQ SN:PGA_scaffold50408__1_contigs__length_19146 LN:19146 skipping SAM header line: @SQ SN:PGA_scaffold50414__1_contigs__length_43015 LN:43015 skipping SAM header line: @SQ SN:PGA_scaffold50417__1_contigs__length_16014 LN:16014 skipping SAM header line: @SQ SN:PGA_scaffold50422__1_contigs__length_15537 LN:15537 skipping SAM header line: @SQ SN:PGA_scaffold50423__1_contigs__length_25769 LN:25769 skipping SAM header line: @SQ SN:PGA_scaffold50424__1_contigs__length_37325 LN:37325 skipping SAM header line: @SQ SN:PGA_scaffold50430__1_contigs__length_11521 LN:11521 skipping SAM header line: @SQ SN:PGA_scaffold50438__1_contigs__length_22240 LN:22240 skipping SAM header line: @SQ SN:PGA_scaffold50444__1_contigs__length_11097 LN:11097 skipping SAM header line: @SQ SN:PGA_scaffold50446__1_contigs__length_10549 LN:10549 skipping SAM header line: @SQ SN:PGA_scaffold50461__1_contigs__length_16604 LN:16604 skipping SAM header line: @SQ SN:PGA_scaffold50464__1_contigs__length_14981 LN:14981 skipping SAM header line: @SQ SN:PGA_scaffold50465__1_contigs__length_15781 LN:15781 skipping SAM header line: @SQ SN:PGA_scaffold50467__1_contigs__length_19553 LN:19553 skipping SAM header line: @SQ SN:PGA_scaffold50468__1_contigs__length_13060 LN:13060 skipping SAM header line: @SQ SN:PGA_scaffold50469__1_contigs__length_10848 LN:10848 skipping SAM header line: @SQ SN:PGA_scaffold50470__1_contigs__length_15679 LN:15679 skipping SAM header line: @SQ SN:PGA_scaffold50483__1_contigs__length_25583 LN:25583 skipping SAM header line: @SQ SN:PGA_scaffold50491__1_contigs__length_12454 LN:12454 skipping SAM header line: @SQ SN:PGA_scaffold50494__1_contigs__length_11821 LN:11821 skipping SAM header line: @SQ SN:PGA_scaffold50498__1_contigs__length_13160 LN:13160 skipping SAM header line: @SQ SN:PGA_scaffold50511__1_contigs__length_10197 LN:10197 skipping SAM header line: @SQ SN:PGA_scaffold50519__1_contigs__length_15618 LN:15618 skipping SAM header line: @SQ SN:PGA_scaffold50529__1_contigs__length_10059 LN:10059 skipping SAM header line: @SQ SN:PGA_scaffold50532__1_contigs__length_11031 LN:11031 skipping SAM header line: @SQ SN:PGA_scaffold50540__1_contigs__length_13322 LN:13322 skipping SAM header line: @SQ SN:PGA_scaffold50541__1_contigs__length_11849 LN:11849 skipping SAM header line: @SQ SN:PGA_scaffold50548__1_contigs__length_14983 LN:14983 skipping SAM header line: @SQ SN:PGA_scaffold50558__1_contigs__length_12826 LN:12826 skipping SAM header line: @SQ SN:PGA_scaffold50563__1_contigs__length_18121 LN:18121 skipping SAM header line: @SQ SN:PGA_scaffold50567__1_contigs__length_11044 LN:11044 skipping SAM header line: @SQ SN:PGA_scaffold50571__1_contigs__length_12266 LN:12266 skipping SAM header line: @SQ SN:PGA_scaffold50583__1_contigs__length_23804 LN:23804 skipping SAM header line: @SQ SN:PGA_scaffold50591__1_contigs__length_14743 LN:14743 skipping SAM header line: @SQ SN:PGA_scaffold50601__1_contigs__length_10535 LN:10535 skipping SAM header line: @SQ SN:PGA_scaffold50611__1_contigs__length_12277 LN:12277 skipping SAM header line: @SQ SN:PGA_scaffold50624__1_contigs__length_14000 LN:14000 skipping SAM header line: @SQ SN:PGA_scaffold50630__1_contigs__length_17074 LN:17074 skipping SAM header line: @SQ SN:PGA_scaffold50633__1_contigs__length_16466 LN:16466 skipping SAM header line: @SQ SN:PGA_scaffold50636__1_contigs__length_14395 LN:14395 skipping SAM header line: @SQ SN:PGA_scaffold50658__1_contigs__length_23340 LN:23340 skipping SAM header line: @SQ SN:PGA_scaffold50664__1_contigs__length_10217 LN:10217 skipping SAM header line: @SQ SN:PGA_scaffold50677__1_contigs__length_11180 LN:11180 skipping SAM header line: @SQ SN:PGA_scaffold50678__1_contigs__length_10826 LN:10826 skipping SAM header line: @SQ SN:PGA_scaffold50680__1_contigs__length_21674 LN:21674 skipping SAM header line: @SQ SN:PGA_scaffold50693__1_contigs__length_12761 LN:12761 skipping SAM header line: @SQ SN:PGA_scaffold50696__1_contigs__length_18934 LN:18934 skipping SAM header line: @SQ SN:PGA_scaffold50702__1_contigs__length_16367 LN:16367 skipping SAM header line: @SQ SN:PGA_scaffold50705__1_contigs__length_12284 LN:12284 skipping SAM header line: @SQ SN:PGA_scaffold50708__1_contigs__length_10400 LN:10400 skipping SAM header line: @SQ SN:PGA_scaffold50711__1_contigs__length_10682 LN:10682 skipping SAM header line: @SQ SN:PGA_scaffold50714__1_contigs__length_13664 LN:13664 skipping SAM header line: @SQ SN:PGA_scaffold50717__1_contigs__length_10591 LN:10591 skipping SAM header line: @SQ SN:PGA_scaffold50725__1_contigs__length_39725 LN:39725 skipping SAM header line: @SQ SN:PGA_scaffold50753__1_contigs__length_12335 LN:12335 skipping SAM header line: @SQ SN:PGA_scaffold50759__1_contigs__length_10334 LN:10334 skipping SAM header line: @SQ SN:PGA_scaffold50774__1_contigs__length_12110 LN:12110 skipping SAM header line: @SQ SN:PGA_scaffold50806__1_contigs__length_11311 LN:11311 skipping SAM header line: @SQ SN:PGA_scaffold50814__1_contigs__length_14194 LN:14194 skipping SAM header line: @SQ SN:PGA_scaffold50823__1_contigs__length_15181 LN:15181 skipping SAM header line: @SQ SN:PGA_scaffold50839__1_contigs__length_13550 LN:13550 skipping SAM header line: @SQ SN:PGA_scaffold50855__1_contigs__length_17396 LN:17396 skipping SAM header line: @SQ SN:PGA_scaffold50857__1_contigs__length_15440 LN:15440 skipping SAM header line: @SQ SN:PGA_scaffold50862__1_contigs__length_10894 LN:10894 skipping SAM header line: @SQ SN:PGA_scaffold50881__1_contigs__length_11214 LN:11214 skipping SAM header line: @SQ SN:PGA_scaffold50884__1_contigs__length_14439 LN:14439 skipping SAM header line: @SQ SN:PGA_scaffold50887__1_contigs__length_20418 LN:20418 skipping SAM header line: @SQ SN:PGA_scaffold50893__1_contigs__length_17684 LN:17684 skipping SAM header line: @SQ SN:PGA_scaffold50899__1_contigs__length_10258 LN:10258 skipping SAM header line: @SQ SN:PGA_scaffold50903__1_contigs__length_12444 LN:12444 skipping SAM header line: @SQ SN:PGA_scaffold50910__1_contigs__length_10139 LN:10139 skipping SAM header line: @SQ SN:PGA_scaffold50934__1_contigs__length_11866 LN:11866 skipping SAM header line: @SQ SN:PGA_scaffold50956__1_contigs__length_12656 LN:12656 skipping SAM header line: @SQ SN:PGA_scaffold50985__1_contigs__length_16753 LN:16753 skipping SAM header line: @SQ SN:PGA_scaffold51013__1_contigs__length_11793 LN:11793 skipping SAM header line: @SQ SN:PGA_scaffold51021__1_contigs__length_35521 LN:35521 skipping SAM header line: @SQ SN:PGA_scaffold51027__1_contigs__length_18261 LN:18261 skipping SAM header line: @SQ SN:PGA_scaffold51049__1_contigs__length_11305 LN:11305 skipping SAM header line: @SQ SN:PGA_scaffold51113__1_contigs__length_11184 LN:11184 skipping SAM header line: @SQ SN:PGA_scaffold51138__1_contigs__length_13237 LN:13237 skipping SAM header line: @SQ SN:PGA_scaffold51144__1_contigs__length_25001 LN:25001 skipping SAM header line: @SQ SN:PGA_scaffold51195__1_contigs__length_13187 LN:13187 skipping SAM header line: @SQ SN:PGA_scaffold51200__1_contigs__length_10608 LN:10608 skipping SAM header line: @SQ SN:PGA_scaffold51207__1_contigs__length_11585 LN:11585 skipping SAM header line: @SQ SN:PGA_scaffold51214__1_contigs__length_11930 LN:11930 skipping SAM header line: @SQ SN:PGA_scaffold51239__1_contigs__length_28000 LN:28000 skipping SAM header line: @SQ SN:PGA_scaffold51251__1_contigs__length_17902 LN:17902 skipping SAM header line: @SQ SN:PGA_scaffold51297__1_contigs__length_15202 LN:15202 skipping SAM header line: @SQ SN:PGA_scaffold51302__1_contigs__length_11436 LN:11436 skipping SAM header line: @SQ SN:PGA_scaffold51330__1_contigs__length_11389 LN:11389 skipping SAM header line: @SQ SN:PGA_scaffold51344__1_contigs__length_17940 LN:17940 skipping SAM header line: @SQ SN:PGA_scaffold51353__1_contigs__length_12153 LN:12153 skipping SAM header line: @SQ SN:PGA_scaffold51355__1_contigs__length_10824 LN:10824 skipping SAM header line: @SQ SN:PGA_scaffold51375__1_contigs__length_10725 LN:10725 skipping SAM header line: @SQ SN:PGA_scaffold51393__1_contigs__length_12721 LN:12721 skipping SAM header line: @SQ SN:PGA_scaffold51403__1_contigs__length_11443 LN:11443 skipping SAM header line: @SQ SN:PGA_scaffold51433__1_contigs__length_13371 LN:13371 skipping SAM header line: @SQ SN:PGA_scaffold51437__1_contigs__length_17578 LN:17578 skipping SAM header line: @SQ SN:PGA_scaffold51457__1_contigs__length_20804 LN:20804 skipping SAM header line: @SQ SN:PGA_scaffold51458__1_contigs__length_13460 LN:13460 skipping SAM header line: @SQ SN:PGA_scaffold51462__1_contigs__length_13881 LN:13881 skipping SAM header line: @SQ SN:PGA_scaffold51466__1_contigs__length_20767 LN:20767 skipping SAM header line: @SQ SN:PGA_scaffold51474__1_contigs__length_18051 LN:18051 skipping SAM header line: @SQ SN:PGA_scaffold51483__1_contigs__length_10413 LN:10413 skipping SAM header line: @SQ SN:PGA_scaffold51487__1_contigs__length_11038 LN:11038 skipping SAM header line: @SQ SN:PGA_scaffold51506__1_contigs__length_17516 LN:17516 skipping SAM header line: @SQ SN:PGA_scaffold51527__1_contigs__length_12947 LN:12947 skipping SAM header line: @SQ SN:PGA_scaffold51529__1_contigs__length_14797 LN:14797 skipping SAM header line: @SQ SN:PGA_scaffold51536__1_contigs__length_21274 LN:21274 skipping SAM header line: @SQ SN:PGA_scaffold51544__1_contigs__length_32260 LN:32260 skipping SAM header line: @SQ SN:PGA_scaffold51545__1_contigs__length_14880 LN:14880 skipping SAM header line: @SQ SN:PGA_scaffold51551__1_contigs__length_17471 LN:17471 skipping SAM header line: @SQ SN:PGA_scaffold51553__1_contigs__length_15277 LN:15277 skipping SAM header line: @SQ SN:PGA_scaffold51555__1_contigs__length_12794 LN:12794 skipping SAM header line: @SQ SN:PGA_scaffold51557__1_contigs__length_12064 LN:12064 skipping SAM header line: @SQ SN:PGA_scaffold51573__1_contigs__length_14484 LN:14484 skipping SAM header line: @SQ SN:PGA_scaffold51609__1_contigs__length_11770 LN:11770 skipping SAM header line: @SQ SN:PGA_scaffold51613__1_contigs__length_15908 LN:15908 skipping SAM header line: @SQ SN:PGA_scaffold51626__1_contigs__length_14432 LN:14432 skipping SAM header line: @SQ SN:PGA_scaffold51633__1_contigs__length_14476 LN:14476 skipping SAM header line: @SQ SN:PGA_scaffold51635__1_contigs__length_11615 LN:11615 skipping SAM header line: @SQ SN:PGA_scaffold51643__1_contigs__length_19869 LN:19869 skipping SAM header line: @SQ SN:PGA_scaffold51648__1_contigs__length_13972 LN:13972 skipping SAM header line: @SQ SN:PGA_scaffold51651__1_contigs__length_10636 LN:10636 skipping SAM header line: @SQ SN:PGA_scaffold51659__1_contigs__length_25098 LN:25098 skipping SAM header line: @SQ SN:PGA_scaffold51664__1_contigs__length_10193 LN:10193 skipping SAM header line: @SQ SN:PGA_scaffold51671__1_contigs__length_12633 LN:12633 skipping SAM header line: @SQ SN:PGA_scaffold51675__1_contigs__length_11405 LN:11405 skipping SAM header line: @SQ SN:PGA_scaffold51680__1_contigs__length_18586 LN:18586 skipping SAM header line: @SQ SN:PGA_scaffold51682__1_contigs__length_11315 LN:11315 skipping SAM header line: @SQ SN:PGA_scaffold51684__1_contigs__length_32586 LN:32586 skipping SAM header line: @SQ SN:PGA_scaffold51686__1_contigs__length_16642 LN:16642 skipping SAM header line: @SQ SN:PGA_scaffold51693__1_contigs__length_14051 LN:14051 skipping SAM header line: @SQ SN:PGA_scaffold51694__1_contigs__length_13071 LN:13071 skipping SAM header line: @SQ SN:PGA_scaffold51695__1_contigs__length_11099 LN:11099 skipping SAM header line: @SQ SN:PGA_scaffold51704__1_contigs__length_13569 LN:13569 skipping SAM header line: @SQ SN:PGA_scaffold51712__1_contigs__length_22480 LN:22480 skipping SAM header line: @SQ SN:PGA_scaffold51713__1_contigs__length_14688 LN:14688 skipping SAM header line: @SQ SN:PGA_scaffold51724__1_contigs__length_13355 LN:13355 skipping SAM header line: @SQ SN:PGA_scaffold51730__1_contigs__length_17419 LN:17419 skipping SAM header line: @SQ SN:PGA_scaffold51753__1_contigs__length_11177 LN:11177 skipping SAM header line: @SQ SN:PGA_scaffold51765__1_contigs__length_23740 LN:23740 skipping SAM header line: @SQ SN:PGA_scaffold51767__1_contigs__length_11112 LN:11112 skipping SAM header line: @SQ SN:PGA_scaffold51773__1_contigs__length_15736 LN:15736 skipping SAM header line: @SQ SN:PGA_scaffold51777__1_contigs__length_26355 LN:26355 skipping SAM header line: @SQ SN:PGA_scaffold51782__1_contigs__length_22898 LN:22898 skipping SAM header line: @SQ SN:PGA_scaffold51784__1_contigs__length_28054 LN:28054 skipping SAM header line: @SQ SN:PGA_scaffold51785__1_contigs__length_18706 LN:18706 skipping SAM header line: @SQ SN:PGA_scaffold51794__1_contigs__length_23350 LN:23350 skipping SAM header line: @SQ SN:PGA_scaffold51800__1_contigs__length_21608 LN:21608 skipping SAM header line: @SQ SN:PGA_scaffold51801__1_contigs__length_25132 LN:25132 skipping SAM header line: @SQ SN:PGA_scaffold51808__1_contigs__length_15451 LN:15451 skipping SAM header line: @SQ SN:PGA_scaffold51812__1_contigs__length_11275 LN:11275 skipping SAM header line: @SQ SN:PGA_scaffold51819__1_contigs__length_11191 LN:11191 skipping SAM header line: @SQ SN:PGA_scaffold51822__1_contigs__length_14045 LN:14045 skipping SAM header line: @SQ SN:PGA_scaffold51827__1_contigs__length_44668 LN:44668 skipping SAM header line: @SQ SN:PGA_scaffold51836__1_contigs__length_13511 LN:13511 skipping SAM header line: @SQ SN:PGA_scaffold51838__1_contigs__length_17245 LN:17245 skipping SAM header line: @SQ SN:PGA_scaffold51860__1_contigs__length_10239 LN:10239 skipping SAM header line: @SQ SN:PGA_scaffold51868__1_contigs__length_14616 LN:14616 skipping SAM header line: @SQ SN:PGA_scaffold51871__1_contigs__length_15722 LN:15722 skipping SAM header line: @SQ SN:PGA_scaffold51877__1_contigs__length_14375 LN:14375 skipping SAM header line: @SQ SN:PGA_scaffold51878__1_contigs__length_21659 LN:21659 skipping SAM header line: @SQ SN:PGA_scaffold51885__1_contigs__length_11852 LN:11852 skipping SAM header line: @SQ SN:PGA_scaffold51902__1_contigs__length_16215 LN:16215 skipping SAM header line: @SQ SN:PGA_scaffold51905__1_contigs__length_15231 LN:15231 skipping SAM header line: @SQ SN:PGA_scaffold51908__1_contigs__length_16044 LN:16044 skipping SAM header line: @SQ SN:PGA_scaffold51913__1_contigs__length_13656 LN:13656 skipping SAM header line: @SQ SN:PGA_scaffold51923__1_contigs__length_17619 LN:17619 skipping SAM header line: @SQ SN:PGA_scaffold51925__1_contigs__length_33625 LN:33625 skipping SAM header line: @SQ SN:PGA_scaffold51928__1_contigs__length_20608 LN:20608 skipping SAM header line: @SQ SN:PGA_scaffold51938__1_contigs__length_12843 LN:12843 skipping SAM header line: @SQ SN:PGA_scaffold51944__1_contigs__length_15649 LN:15649 skipping SAM header line: @SQ SN:PGA_scaffold51947__1_contigs__length_16517 LN:16517 skipping SAM header line: @SQ SN:PGA_scaffold51948__1_contigs__length_21090 LN:21090 skipping SAM header line: @SQ SN:PGA_scaffold51952__1_contigs__length_18193 LN:18193 skipping SAM header line: @SQ SN:PGA_scaffold51977__1_contigs__length_11343 LN:11343 skipping SAM header line: @SQ SN:PGA_scaffold51978__1_contigs__length_15351 LN:15351 skipping SAM header line: @SQ SN:PGA_scaffold51979__1_contigs__length_17431 LN:17431 skipping SAM header line: @SQ SN:PGA_scaffold51994__1_contigs__length_13921 LN:13921 skipping SAM header line: @SQ SN:PGA_scaffold51999__1_contigs__length_15700 LN:15700 skipping SAM header line: @SQ SN:PGA_scaffold52002__1_contigs__length_14336 LN:14336 skipping SAM header line: @SQ SN:PGA_scaffold52011__1_contigs__length_12563 LN:12563 skipping SAM header line: @SQ SN:PGA_scaffold52030__1_contigs__length_16956 LN:16956 skipping SAM header line: @SQ SN:PGA_scaffold52047__1_contigs__length_52540 LN:52540 skipping SAM header line: @SQ SN:PGA_scaffold52049__1_contigs__length_14319 LN:14319 skipping SAM header line: @SQ SN:PGA_scaffold52050__1_contigs__length_46830 LN:46830 skipping SAM header line: @SQ SN:PGA_scaffold52063__1_contigs__length_28482 LN:28482 skipping SAM header line: @SQ SN:PGA_scaffold52082__1_contigs__length_11288 LN:11288 skipping SAM header line: @SQ SN:PGA_scaffold52106__1_contigs__length_20991 LN:20991 skipping SAM header line: @SQ SN:PGA_scaffold52108__1_contigs__length_20775 LN:20775 skipping SAM header line: @SQ SN:PGA_scaffold52113__1_contigs__length_31958 LN:31958 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold52169__1_contigs__length_11589 LN:11589 skipping SAM header line: @SQ SN:PGA_scaffold52173__1_contigs__length_22619 LN:22619 skipping SAM header line: @SQ SN:PGA_scaffold52175__1_contigs__length_18803 LN:18803 skipping SAM header line: @SQ SN:PGA_scaffold52180__1_contigs__length_20655 LN:20655 skipping SAM header line: @SQ SN:PGA_scaffold52184__1_contigs__length_18226 LN:18226 skipping SAM header line: @SQ SN:PGA_scaffold52189__1_contigs__length_25604 LN:25604 skipping SAM header line: @SQ SN:PGA_scaffold52190__1_contigs__length_13400 LN:13400 skipping SAM header line: @SQ SN:PGA_scaffold52197__1_contigs__length_10522 LN:10522 skipping SAM header line: @SQ SN:PGA_scaffold52199__1_contigs__length_32611 LN:32611 skipping SAM header line: @SQ SN:PGA_scaffold52201__1_contigs__length_22024 LN:22024 skipping SAM header line: @SQ SN:PGA_scaffold52202__1_contigs__length_16426 LN:16426 skipping SAM header line: @SQ SN:PGA_scaffold52203__1_contigs__length_13267 LN:13267 skipping SAM header line: @SQ SN:PGA_scaffold52204__1_contigs__length_17267 LN:17267 skipping SAM header line: @SQ SN:PGA_scaffold52211__1_contigs__length_36968 LN:36968 skipping SAM header line: @SQ SN:PGA_scaffold52212__1_contigs__length_11543 LN:11543 skipping SAM header line: @SQ SN:PGA_scaffold52215__1_contigs__length_42996 LN:42996 skipping SAM header line: @SQ SN:PGA_scaffold52217__1_contigs__length_15239 LN:15239 skipping SAM header line: @SQ SN:PGA_scaffold52222__1_contigs__length_39311 LN:39311 skipping SAM header line: @SQ SN:PGA_scaffold52224__1_contigs__length_12069 LN:12069 skipping SAM header line: @SQ SN:PGA_scaffold52226__1_contigs__length_21714 LN:21714 skipping SAM header line: @SQ SN:PGA_scaffold52229__1_contigs__length_13133 LN:13133 skipping SAM header line: @SQ SN:PGA_scaffold52230__1_contigs__length_27438 LN:27438 skipping SAM header line: @SQ SN:PGA_scaffold52231__1_contigs__length_13042 LN:13042 skipping SAM header line: @SQ SN:PGA_scaffold52232__1_contigs__length_13820 LN:13820 skipping SAM header line: @SQ SN:PGA_scaffold52233__1_contigs__length_27622 LN:27622 skipping SAM header line: @SQ SN:PGA_scaffold52235__1_contigs__length_15937 LN:15937 skipping SAM header line: @SQ SN:PGA_scaffold52236__1_contigs__length_17651 LN:17651 skipping SAM header line: @SQ SN:PGA_scaffold52237__1_contigs__length_15057 LN:15057 skipping SAM header line: @SQ SN:PGA_scaffold52240__1_contigs__length_19987 LN:19987 skipping SAM header line: @SQ SN:PGA_scaffold52241__1_contigs__length_14285 LN:14285 skipping SAM header line: @SQ SN:PGA_scaffold52244__1_contigs__length_18004 LN:18004 skipping SAM header line: @SQ SN:PGA_scaffold52245__1_contigs__length_11102 LN:11102 skipping SAM header line: @SQ SN:PGA_scaffold52250__1_contigs__length_10089 LN:10089 skipping SAM header line: @SQ SN:PGA_scaffold52251__1_contigs__length_14608 LN:14608 skipping SAM header line: @SQ SN:PGA_scaffold52253__1_contigs__length_10793 LN:10793 skipping SAM header line: @SQ SN:PGA_scaffold52256__1_contigs__length_10795 LN:10795 skipping SAM header line: @SQ SN:PGA_scaffold52257__1_contigs__length_12932 LN:12932 skipping SAM header line: @SQ SN:PGA_scaffold52260__1_contigs__length_29787 LN:29787 skipping SAM header line: @SQ SN:PGA_scaffold52263__1_contigs__length_26833 LN:26833 skipping SAM header line: @SQ SN:PGA_scaffold52264__1_contigs__length_15808 LN:15808 skipping SAM header line: @SQ SN:PGA_scaffold52265__1_contigs__length_12263 LN:12263 skipping SAM header line: @SQ SN:PGA_scaffold52266__1_contigs__length_35673 LN:35673 skipping SAM header line: @SQ SN:PGA_scaffold52267__1_contigs__length_10611 LN:10611 skipping SAM header line: @SQ SN:PGA_scaffold52269__1_contigs__length_14539 LN:14539 skipping SAM header line: @SQ SN:PGA_scaffold52270__1_contigs__length_19467 LN:19467 skipping SAM header line: @SQ SN:PGA_scaffold52271__1_contigs__length_24393 LN:24393 skipping SAM header line: @SQ SN:PGA_scaffold52273__1_contigs__length_10100 LN:10100 skipping SAM header line: @SQ SN:PGA_scaffold52278__1_contigs__length_16535 LN:16535 skipping SAM header line: @SQ SN:PGA_scaffold52280__1_contigs__length_20240 LN:20240 skipping SAM header line: @SQ SN:PGA_scaffold52281__1_contigs__length_28475 LN:28475 skipping SAM header line: @SQ SN:PGA_scaffold52284__1_contigs__length_17454 LN:17454 skipping SAM header line: @SQ SN:PGA_scaffold52286__1_contigs__length_10061 LN:10061 skipping SAM header line: @SQ SN:PGA_scaffold52296__1_contigs__length_12638 LN:12638 skipping SAM header line: @SQ SN:PGA_scaffold52298__1_contigs__length_23514 LN:23514 skipping SAM header line: @SQ SN:PGA_scaffold52302__1_contigs__length_13837 LN:13837 skipping SAM header line: @SQ SN:PGA_scaffold52305__1_contigs__length_23416 LN:23416 skipping SAM header line: @SQ SN:PGA_scaffold52307__1_contigs__length_15577 LN:15577 skipping SAM header line: @SQ SN:PGA_scaffold52308__1_contigs__length_10252 LN:10252 skipping SAM header line: @SQ SN:PGA_scaffold52311__1_contigs__length_26230 LN:26230 skipping SAM header line: @SQ SN:PGA_scaffold52319__1_contigs__length_23696 LN:23696 skipping SAM header line: @SQ SN:PGA_scaffold52324__1_contigs__length_13942 LN:13942 skipping SAM header line: @SQ SN:PGA_scaffold52328__1_contigs__length_39984 LN:39984 skipping SAM header line: @SQ SN:PGA_scaffold52348__1_contigs__length_13487 LN:13487 skipping SAM header line: @SQ SN:PGA_scaffold52349__1_contigs__length_37106 LN:37106 skipping SAM header line: @SQ SN:PGA_scaffold52350__1_contigs__length_45781 LN:45781 skipping SAM header line: @SQ SN:PGA_scaffold52359__1_contigs__length_33365 LN:33365 skipping SAM header line: @SQ SN:PGA_scaffold52364__1_contigs__length_18994 LN:18994 skipping SAM header line: @SQ SN:PGA_scaffold52367__1_contigs__length_13671 LN:13671 skipping SAM header line: @SQ SN:PGA_scaffold52376__1_contigs__length_13470 LN:13470 skipping SAM header line: @SQ SN:PGA_scaffold52380__1_contigs__length_12409 LN:12409 skipping SAM header line: @SQ SN:PGA_scaffold52384__1_contigs__length_27088 LN:27088 skipping SAM header line: @SQ SN:PGA_scaffold52385__1_contigs__length_21970 LN:21970 skipping SAM header line: @SQ SN:PGA_scaffold52387__1_contigs__length_40531 LN:40531 skipping SAM header line: @SQ SN:PGA_scaffold52389__1_contigs__length_11665 LN:11665 skipping SAM header line: @SQ SN:PGA_scaffold52390__1_contigs__length_35773 LN:35773 skipping SAM header line: @SQ SN:PGA_scaffold52392__1_contigs__length_46240 LN:46240 skipping SAM header line: @SQ SN:PGA_scaffold52393__1_contigs__length_36780 LN:36780 skipping SAM header line: @SQ SN:PGA_scaffold52394__1_contigs__length_53108 LN:53108 skipping SAM header line: @SQ SN:PGA_scaffold52395__1_contigs__length_14217 LN:14217 skipping SAM header line: @SQ SN:PGA_scaffold52396__1_contigs__length_36505 LN:36505 skipping SAM header line: @SQ SN:PGA_scaffold52397__1_contigs__length_17176 LN:17176 skipping SAM header line: @SQ SN:PGA_scaffold52398__1_contigs__length_20968 LN:20968 skipping SAM header line: @SQ SN:PGA_scaffold52400__1_contigs__length_28311 LN:28311 skipping SAM header line: @SQ SN:PGA_scaffold52433__1_contigs__length_10189 LN:10189 skipping SAM header line: @SQ SN:PGA_scaffold52436__1_contigs__length_10520 LN:10520 skipping SAM header line: @SQ SN:PGA_scaffold52446__1_contigs__length_10115 LN:10115 skipping SAM header line: @SQ SN:PGA_scaffold52478__1_contigs__length_11789 LN:11789 skipping SAM header line: @SQ SN:PGA_scaffold52541__1_contigs__length_11870 LN:11870 skipping SAM header line: @SQ SN:PGA_scaffold52549__1_contigs__length_10359 LN:10359 skipping SAM header line: @SQ SN:PGA_scaffold52575__1_contigs__length_11511 LN:11511 skipping SAM header line: @SQ SN:PGA_scaffold52641__1_contigs__length_10537 LN:10537 skipping SAM header line: @SQ SN:PGA_scaffold52688__1_contigs__length_10626 LN:10626 skipping SAM header line: @SQ SN:PGA_scaffold52695__1_contigs__length_11369 LN:11369 skipping SAM header line: @SQ SN:PGA_scaffold52716__1_contigs__length_10153 LN:10153 skipping SAM header line: @SQ SN:PGA_scaffold52724__1_contigs__length_10927 LN:10927 skipping SAM header line: @SQ SN:PGA_scaffold52749__1_contigs__length_11021 LN:11021 skipping SAM header line: @SQ SN:PGA_scaffold52752__1_contigs__length_10196 LN:10196 skipping SAM header line: @SQ SN:PGA_scaffold52770__1_contigs__length_10033 LN:10033 skipping SAM header line: @SQ SN:PGA_scaffold52776__1_contigs__length_10306 LN:10306 skipping SAM header line: @SQ SN:PGA_scaffold52798__1_contigs__length_11546 LN:11546 skipping SAM header line: @SQ SN:PGA_scaffold52806__1_contigs__length_10216 LN:10216 skipping SAM header line: @SQ SN:PGA_scaffold52807__1_contigs__length_10110 LN:10110 skipping SAM header line: @SQ SN:PGA_scaffold52809__1_contigs__length_11267 LN:11267 skipping SAM header line: @SQ SN:PGA_scaffold52829__1_contigs__length_10725 LN:10725 skipping SAM header line: @SQ SN:PGA_scaffold52830__1_contigs__length_10002 LN:10002 skipping SAM header line: @SQ SN:PGA_scaffold52844__1_contigs__length_10607 LN:10607 skipping SAM header line: @SQ SN:PGA_scaffold52859__1_contigs__length_11599 LN:11599 skipping SAM header line: @SQ SN:PGA_scaffold52860__1_contigs__length_10167 LN:10167 skipping SAM header line: @SQ SN:PGA_scaffold52862__1_contigs__length_10955 LN:10955 skipping SAM header line: @SQ SN:PGA_scaffold52863__1_contigs__length_10934 LN:10934 skipping SAM header line: @SQ SN:PGA_scaffold52864__1_contigs__length_13662 LN:13662 skipping SAM header line: @SQ SN:PGA_scaffold52869__1_contigs__length_35263 LN:35263 skipping SAM header line: @SQ SN:PGA_scaffold52870__1_contigs__length_19057 LN:19057 skipping SAM header line: @SQ SN:PGA_scaffold52871__1_contigs__length_11017 LN:11017 skipping SAM header line: @SQ SN:PGA_scaffold52872__1_contigs__length_34839 LN:34839 skipping SAM header line: @SQ SN:PGA_scaffold52873__1_contigs__length_19623 LN:19623 skipping SAM header line: @SQ SN:PGA_scaffold52877__1_contigs__length_10665 LN:10665 skipping SAM header line: @SQ SN:PGA_scaffold52880__1_contigs__length_17400 LN:17400 skipping SAM header line: @SQ SN:PGA_scaffold52881__1_contigs__length_25209 LN:25209 skipping SAM header line: @SQ SN:PGA_scaffold52888__1_contigs__length_16347 LN:16347 skipping SAM header line: @SQ SN:PGA_scaffold52892__1_contigs__length_39173 LN:39173 skipping SAM header line: @SQ SN:PGA_scaffold52893__1_contigs__length_36559 LN:36559 skipping SAM header line: @SQ SN:PGA_scaffold52895__1_contigs__length_13580 LN:13580 skipping SAM header line: @SQ SN:PGA_scaffold52896__1_contigs__length_24150 LN:24150 skipping SAM header line: @SQ SN:PGA_scaffold52900__1_contigs__length_12092 LN:12092 skipping SAM header line: @SQ SN:PGA_scaffold52902__1_contigs__length_11113 LN:11113 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold52980__1_contigs__length_17846 LN:17846 skipping SAM header line: @SQ SN:PGA_scaffold52983__1_contigs__length_10293 LN:10293 skipping SAM header line: @SQ SN:PGA_scaffold52984__1_contigs__length_28854 LN:28854 skipping SAM header line: @SQ SN:PGA_scaffold52992__1_contigs__length_12625 LN:12625 skipping SAM header line: @SQ SN:PGA_scaffold52996__1_contigs__length_20578 LN:20578 skipping SAM header line: @SQ SN:PGA_scaffold53004__1_contigs__length_12032 LN:12032 skipping SAM header line: @SQ SN:PGA_scaffold53006__1_contigs__length_11512 LN:11512 skipping SAM header line: @SQ SN:PGA_scaffold53007__1_contigs__length_24464 LN:24464 skipping SAM header line: @SQ SN:PGA_scaffold53018__1_contigs__length_28564 LN:28564 skipping SAM header line: @SQ SN:PGA_scaffold53021__1_contigs__length_37828 LN:37828 skipping SAM header line: @SQ SN:PGA_scaffold53024__1_contigs__length_10350 LN:10350 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold53115__1_contigs__length_10838 LN:10838 skipping SAM header line: @SQ SN:PGA_scaffold53127__1_contigs__length_10512 LN:10512 skipping SAM header line: @SQ SN:PGA_scaffold53131__1_contigs__length_10882 LN:10882 skipping SAM header line: @SQ SN:PGA_scaffold53138__1_contigs__length_10342 LN:10342 skipping SAM header line: @SQ SN:PGA_scaffold53152__1_contigs__length_15767 LN:15767 skipping SAM header line: @SQ SN:PGA_scaffold53160__1_contigs__length_11386 LN:11386 skipping SAM header line: @SQ SN:PGA_scaffold53163__1_contigs__length_29059 LN:29059 skipping SAM header line: @SQ SN:PGA_scaffold53164__1_contigs__length_16815 LN:16815 skipping SAM header line: @SQ SN:PGA_scaffold53166__1_contigs__length_16188 LN:16188 skipping SAM header line: @SQ SN:PGA_scaffold53177__1_contigs__length_13884 LN:13884 skipping SAM header line: @SQ SN:PGA_scaffold53180__1_contigs__length_11828 LN:11828 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold53296__1_contigs__length_20194 LN:20194 skipping SAM header line: @SQ SN:PGA_scaffold53312__1_contigs__length_25424 LN:25424 skipping SAM header line: @SQ SN:PGA_scaffold53331__1_contigs__length_18451 LN:18451 skipping SAM header line: @SQ SN:PGA_scaffold53334__1_contigs__length_11336 LN:11336 skipping SAM header line: @SQ SN:PGA_scaffold53335__1_contigs__length_22949 LN:22949 skipping SAM header line: @SQ SN:PGA_scaffold53336__1_contigs__length_10646 LN:10646 skipping SAM header line: @SQ SN:PGA_scaffold53339__1_contigs__length_17229 LN:17229 skipping SAM header line: @SQ SN:PGA_scaffold53343__1_contigs__length_31364 LN:31364 skipping SAM header line: @SQ SN:PGA_scaffold53347__1_contigs__length_23449 LN:23449 skipping SAM header line: @SQ SN:PGA_scaffold53388__1_contigs__length_11189 LN:11189 skipping SAM header line: @SQ SN:PGA_scaffold53392__1_contigs__length_13525 LN:13525 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold53449__1_contigs__length_12686 LN:12686 skipping SAM header line: @SQ SN:PGA_scaffold53457__1_contigs__length_13122 LN:13122 skipping SAM header line: @SQ SN:PGA_scaffold53460__1_contigs__length_15921 LN:15921 skipping SAM header line: @SQ SN:PGA_scaffold53461__1_contigs__length_12986 LN:12986 skipping SAM header line: @SQ SN:PGA_scaffold53464__1_contigs__length_15704 LN:15704 skipping SAM header line: @SQ SN:PGA_scaffold53467__1_contigs__length_12825 LN:12825 skipping SAM header line: @SQ SN:PGA_scaffold53469__1_contigs__length_12183 LN:12183 skipping SAM header line: @SQ SN:PGA_scaffold53470__1_contigs__length_15243 LN:15243 skipping SAM header line: @SQ SN:PGA_scaffold53471__1_contigs__length_15384 LN:15384 skipping SAM header line: @SQ SN:PGA_scaffold53477__1_contigs__length_13412 LN:13412 skipping SAM header line: @SQ SN:PGA_scaffold53481__1_contigs__length_19050 LN:19050 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold53546__1_contigs__length_19415 LN:19415 skipping SAM header line: @SQ SN:PGA_scaffold53547__1_contigs__length_11740 LN:11740 skipping SAM header line: @SQ SN:PGA_scaffold53549__1_contigs__length_17026 LN:17026 skipping SAM header line: @SQ SN:PGA_scaffold53550__1_contigs__length_11216 LN:11216 skipping SAM header line: @SQ SN:PGA_scaffold53555__1_contigs__length_12451 LN:12451 skipping SAM header line: @SQ SN:PGA_scaffold53557__1_contigs__length_15130 LN:15130 skipping SAM header line: @SQ SN:PGA_scaffold53559__1_contigs__length_13306 LN:13306 skipping SAM header line: @SQ SN:PGA_scaffold53562__1_contigs__length_18362 LN:18362 skipping SAM header line: @SQ SN:PGA_scaffold53563__1_contigs__length_19031 LN:19031 skipping SAM header line: @SQ SN:PGA_scaffold53582__1_contigs__length_12545 LN:12545 skipping SAM header line: @SQ SN:PGA_scaffold53586__1_contigs__length_21181 LN:21181 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold53637__1_contigs__length_11474 LN:11474 skipping SAM header line: @SQ SN:PGA_scaffold53639__1_contigs__length_33404 LN:33404 skipping SAM header line: @SQ SN:PGA_scaffold53640__1_contigs__length_21221 LN:21221 skipping SAM header line: @SQ SN:PGA_scaffold53641__1_contigs__length_23377 LN:23377 skipping SAM header line: @SQ SN:PGA_scaffold53642__1_contigs__length_22596 LN:22596 skipping SAM header line: @SQ SN:PGA_scaffold53644__1_contigs__length_19221 LN:19221 skipping SAM header line: @SQ SN:PGA_scaffold53645__1_contigs__length_35399 LN:35399 skipping SAM header line: @SQ SN:PGA_scaffold53646__1_contigs__length_17135 LN:17135 skipping SAM header line: @SQ SN:PGA_scaffold53649__1_contigs__length_18714 LN:18714 skipping SAM header line: @SQ SN:PGA_scaffold53650__1_contigs__length_10541 LN:10541 skipping SAM header line: @SQ SN:PGA_scaffold53652__1_contigs__length_16519 LN:16519 skipping SAM header line: @SQ SN:PGA_scaffold53654__1_contigs__length_14050 LN:14050 skipping SAM header line: @SQ SN:PGA_scaffold53656__1_contigs__length_14654 LN:14654 skipping SAM header line: @SQ SN:PGA_scaffold53657__1_contigs__length_30921 LN:30921 skipping SAM header line: @SQ SN:PGA_scaffold53658__1_contigs__length_36208 LN:36208 skipping SAM header line: @SQ SN:PGA_scaffold53660__1_contigs__length_11466 LN:11466 skipping SAM header line: @SQ SN:PGA_scaffold53661__1_contigs__length_12513 LN:12513 skipping SAM header line: @SQ SN:PGA_scaffold53663__1_contigs__length_15514 LN:15514 skipping SAM header line: @SQ SN:PGA_scaffold53664__1_contigs__length_26576 LN:26576 skipping SAM header line: @SQ SN:PGA_scaffold53666__1_contigs__length_20207 LN:20207 skipping SAM header line: @SQ SN:PGA_scaffold53667__1_contigs__length_13677 LN:13677 skipping SAM header line: @SQ SN:PGA_scaffold53670__1_contigs__length_14060 LN:14060 skipping SAM header line: @SQ SN:PGA_scaffold53671__1_contigs__length_11906 LN:11906 skipping SAM header line: @SQ SN:PGA_scaffold53672__1_contigs__length_17762 LN:17762 skipping SAM header line: @SQ SN:PGA_scaffold53676__1_contigs__length_16449 LN:16449 skipping SAM header line: @SQ SN:PGA_scaffold53678__1_contigs__length_14660 LN:14660 skipping SAM header line: @SQ SN:PGA_scaffold53680__1_contigs__length_28424 LN:28424 skipping SAM header line: @SQ SN:PGA_scaffold53681__1_contigs__length_13960 LN:13960 skipping SAM header line: @SQ SN:PGA_scaffold53682__1_contigs__length_26552 LN:26552 skipping SAM header line: @SQ SN:PGA_scaffold53683__1_contigs__length_11731 LN:11731 skipping SAM header line: @SQ SN:PGA_scaffold53686__1_contigs__length_33430 LN:33430 skipping SAM header line: @SQ SN:PGA_scaffold53687__1_contigs__length_10083 LN:10083 skipping SAM header line: @SQ SN:PGA_scaffold53689__1_contigs__length_21269 LN:21269 skipping SAM header line: @SQ SN:PGA_scaffold53691__1_contigs__length_40282 LN:40282 skipping SAM header line: @SQ SN:PGA_scaffold53696__1_contigs__length_28821 LN:28821 skipping SAM header line: @SQ SN:PGA_scaffold53698__1_contigs__length_43785 LN:43785 skipping SAM header line: @SQ SN:PGA_scaffold53699__1_contigs__length_21197 LN:21197 skipping SAM header line: @SQ SN:PGA_scaffold53702__1_contigs__length_19039 LN:19039 skipping SAM header line: @SQ SN:PGA_scaffold53703__1_contigs__length_11166 LN:11166 skipping SAM header line: @SQ SN:PGA_scaffold53705__1_contigs__length_16656 LN:16656 skipping SAM header line: @SQ SN:PGA_scaffold53706__1_contigs__length_10159 LN:10159 skipping SAM header line: @SQ SN:PGA_scaffold53710__1_contigs__length_15537 LN:15537 skipping SAM header line: @SQ SN:PGA_scaffold53714__1_contigs__length_23738 LN:23738 skipping SAM header line: @SQ SN:PGA_scaffold53715__1_contigs__length_15740 LN:15740 skipping SAM header line: @SQ SN:PGA_scaffold53720__1_contigs__length_13662 LN:13662 skipping SAM header line: @SQ SN:PGA_scaffold53721__1_contigs__length_16384 LN:16384 skipping SAM header line: @SQ SN:PGA_scaffold53723__1_contigs__length_14162 LN:14162 skipping SAM header line: @SQ SN:PGA_scaffold53724__1_contigs__length_11699 LN:11699 skipping SAM header line: @SQ SN:PGA_scaffold53725__1_contigs__length_34176 LN:34176 skipping SAM header line: @SQ SN:PGA_scaffold53730__1_contigs__length_14059 LN:14059 skipping SAM header line: @SQ SN:PGA_scaffold53731__1_contigs__length_11885 LN:11885 skipping SAM header line: @SQ SN:PGA_scaffold53739__1_contigs__length_20587 LN:20587 skipping SAM header line: @SQ SN:PGA_scaffold53746__1_contigs__length_10309 LN:10309 skipping SAM header line: @SQ SN:PGA_scaffold53747__1_contigs__length_25423 LN:25423 skipping SAM header line: @SQ SN:PGA_scaffold53748__1_contigs__length_14204 LN:14204 skipping SAM header line: @SQ SN:PGA_scaffold53751__1_contigs__length_33279 LN:33279 skipping SAM header line: @SQ SN:PGA_scaffold53753__1_contigs__length_10271 LN:10271 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold53792__1_contigs__length_11556 LN:11556 skipping SAM header line: @SQ SN:PGA_scaffold53810__1_contigs__length_10098 LN:10098 skipping SAM header line: @SQ SN:PGA_scaffold53840__1_contigs__length_10403 LN:10403 skipping SAM header line: @SQ SN:PGA_scaffold53848__1_contigs__length_10363 LN:10363 skipping SAM header line: @SQ SN:PGA_scaffold53856__1_contigs__length_10086 LN:10086 skipping SAM header line: @SQ SN:PGA_scaffold53859__1_contigs__length_11602 LN:11602 skipping SAM header line: @SQ SN:PGA_scaffold53876__1_contigs__length_11004 LN:11004 skipping SAM header line: @SQ SN:PGA_scaffold53913__1_contigs__length_11723 LN:11723 skipping SAM header line: @SQ SN:PGA_scaffold53914__1_contigs__length_11419 LN:11419 skipping SAM header line: @SQ SN:PGA_scaffold53922__1_contigs__length_10072 LN:10072 skipping SAM header line: @SQ SN:PGA_scaffold53928__1_contigs__length_10640 LN:10640 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold53992__1_contigs__length_30819 LN:30819 skipping SAM header line: @SQ SN:PGA_scaffold53993__1_contigs__length_26828 LN:26828 skipping SAM header line: @SQ SN:PGA_scaffold53994__1_contigs__length_45288 LN:45288 skipping SAM header line: @SQ SN:PGA_scaffold53995__1_contigs__length_36326 LN:36326 skipping SAM header line: @SQ SN:PGA_scaffold53996__1_contigs__length_14183 LN:14183 skipping SAM header line: @SQ SN:PGA_scaffold53997__1_contigs__length_29962 LN:29962 skipping SAM header line: @SQ SN:PGA_scaffold53998__1_contigs__length_11524 LN:11524 skipping SAM header line: @SQ SN:PGA_scaffold54001__1_contigs__length_12396 LN:12396 skipping SAM header line: @SQ SN:PGA_scaffold54002__1_contigs__length_15678 LN:15678 skipping SAM header line: @SQ SN:PGA_scaffold54007__1_contigs__length_11281 LN:11281 skipping SAM header line: @SQ SN:PGA_scaffold54009__1_contigs__length_16295 LN:16295 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold54069__1_contigs__length_15941 LN:15941 skipping SAM header line: @SQ SN:PGA_scaffold54070__1_contigs__length_11360 LN:11360 skipping SAM header line: @SQ SN:PGA_scaffold54074__1_contigs__length_16247 LN:16247 skipping SAM header line: @SQ SN:PGA_scaffold54085__1_contigs__length_10431 LN:10431 skipping SAM header line: @SQ SN:PGA_scaffold54104__1_contigs__length_10618 LN:10618 skipping SAM header line: @SQ SN:PGA_scaffold54110__1_contigs__length_15561 LN:15561 skipping SAM header line: @SQ SN:PGA_scaffold54116__1_contigs__length_10518 LN:10518 skipping SAM header line: @SQ SN:PGA_scaffold54125__1_contigs__length_10541 LN:10541 skipping SAM header line: @SQ SN:PGA_scaffold54141__1_contigs__length_11956 LN:11956 skipping SAM header line: @SQ SN:PGA_scaffold54143__1_contigs__length_21519 LN:21519 skipping SAM header line: @SQ SN:PGA_scaffold54147__1_contigs__length_11123 LN:11123 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold54354__1_contigs__length_12825 LN:12825 skipping SAM header line: @SQ SN:PGA_scaffold54397__1_contigs__length_20211 LN:20211 skipping SAM header line: @SQ SN:PGA_scaffold54412__1_contigs__length_23215 LN:23215 skipping SAM header line: @SQ SN:PGA_scaffold54423__1_contigs__length_13104 LN:13104 skipping SAM header line: @SQ SN:PGA_scaffold54428__1_contigs__length_16938 LN:16938 skipping SAM header line: @SQ SN:PGA_scaffold54453__1_contigs__length_12578 LN:12578 skipping SAM header line: @SQ SN:PGA_scaffold54471__1_contigs__length_14933 LN:14933 skipping SAM header line: @SQ SN:PGA_scaffold54489__1_contigs__length_14633 LN:14633 skipping SAM header line: @SQ SN:PGA_scaffold54496__1_contigs__length_28923 LN:28923 skipping SAM header line: @SQ SN:PGA_scaffold54557__1_contigs__length_18991 LN:18991 skipping SAM header line: @SQ SN:PGA_scaffold54565__1_contigs__length_14439 LN:14439 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold54800__1_contigs__length_13942 LN:13942 skipping SAM header line: @SQ SN:PGA_scaffold54816__1_contigs__length_12782 LN:12782 skipping SAM header line: @SQ SN:PGA_scaffold54822__1_contigs__length_14186 LN:14186 skipping SAM header line: @SQ SN:PGA_scaffold54840__1_contigs__length_14544 LN:14544 skipping SAM header line: @SQ SN:PGA_scaffold54842__1_contigs__length_13625 LN:13625 skipping SAM header line: @SQ SN:PGA_scaffold54848__1_contigs__length_13677 LN:13677 skipping SAM header line: @SQ SN:PGA_scaffold54849__1_contigs__length_14411 LN:14411 skipping SAM header line: @SQ SN:PGA_scaffold54850__1_contigs__length_19928 LN:19928 skipping SAM header line: @SQ SN:PGA_scaffold54852__1_contigs__length_16901 LN:16901 skipping SAM header line: @SQ SN:PGA_scaffold54853__1_contigs__length_19238 LN:19238 skipping SAM header line: @SQ SN:PGA_scaffold54868__1_contigs__length_14683 LN:14683 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold54972__1_contigs__length_14076 LN:14076 skipping SAM header line: @SQ SN:PGA_scaffold54973__1_contigs__length_10788 LN:10788 skipping SAM header line: @SQ SN:PGA_scaffold54975__1_contigs__length_14701 LN:14701 skipping SAM header line: @SQ SN:PGA_scaffold54989__1_contigs__length_11216 LN:11216 skipping SAM header line: @SQ SN:PGA_scaffold54990__1_contigs__length_19079 LN:19079 skipping SAM header line: @SQ SN:PGA_scaffold54993__1_contigs__length_10167 LN:10167 skipping SAM header line: @SQ SN:PGA_scaffold54995__1_contigs__length_18586 LN:18586 skipping SAM header line: @SQ SN:PGA_scaffold54997__1_contigs__length_20535 LN:20535 skipping SAM header line: @SQ SN:PGA_scaffold54999__1_contigs__length_31291 LN:31291 skipping SAM header line: @SQ SN:PGA_scaffold55001__1_contigs__length_12231 LN:12231 skipping SAM header line: @SQ SN:PGA_scaffold55037__1_contigs__length_32580 LN:32580 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold55115__1_contigs__length_20483 LN:20483 skipping SAM header line: @SQ SN:PGA_scaffold55117__1_contigs__length_18219 LN:18219 skipping SAM header line: @SQ SN:PGA_scaffold55135__1_contigs__length_48442 LN:48442 skipping SAM header line: @SQ SN:PGA_scaffold55148__1_contigs__length_17146 LN:17146 skipping SAM header line: @SQ SN:PGA_scaffold55176__1_contigs__length_14221 LN:14221 skipping SAM header line: @SQ SN:PGA_scaffold55179__1_contigs__length_23220 LN:23220 skipping SAM header line: @SQ SN:PGA_scaffold55181__1_contigs__length_12820 LN:12820 skipping SAM header line: @SQ SN:PGA_scaffold55192__1_contigs__length_20012 LN:20012 skipping SAM header line: @SQ SN:PGA_scaffold55193__1_contigs__length_22183 LN:22183 skipping SAM header line: @SQ SN:PGA_scaffold55199__1_contigs__length_37150 LN:37150 skipping SAM header line: @SQ SN:PGA_scaffold55200__1_contigs__length_15465 LN:15465 skipping SAM header line: @SQ SN:PGA_scaffold55204__1_contigs__length_14527 LN:14527 skipping SAM header line: @SQ SN:PGA_scaffold55205__1_contigs__length_27559 LN:27559 skipping SAM header line: @SQ SN:PGA_scaffold55206__1_contigs__length_10390 LN:10390 skipping SAM header line: @SQ SN:PGA_scaffold55209__1_contigs__length_13225 LN:13225 skipping SAM header line: @SQ SN:PGA_scaffold55215__1_contigs__length_12970 LN:12970 skipping SAM header line: @SQ SN:PGA_scaffold55218__1_contigs__length_24248 LN:24248 skipping SAM header line: @SQ SN:PGA_scaffold55219__1_contigs__length_18163 LN:18163 skipping SAM header line: @SQ SN:PGA_scaffold55226__1_contigs__length_24483 LN:24483 skipping SAM header line: @SQ SN:PGA_scaffold55227__1_contigs__length_17144 LN:17144 skipping SAM header line: @SQ SN:PGA_scaffold55230__1_contigs__length_29088 LN:29088 skipping SAM header line: @SQ SN:PGA_scaffold55232__1_contigs__length_10417 LN:10417 skipping SAM header line: @SQ SN:PGA_scaffold55233__1_contigs__length_18596 LN:18596 skipping SAM header line: @SQ SN:PGA_scaffold55237__1_contigs__length_17601 LN:17601 skipping SAM header line: @SQ SN:PGA_scaffold55238__1_contigs__length_15323 LN:15323 skipping SAM header line: @SQ SN:PGA_scaffold55241__1_contigs__length_24001 LN:24001 skipping SAM header line: @SQ SN:PGA_scaffold55242__1_contigs__length_10149 LN:10149 skipping SAM header line: @SQ SN:PGA_scaffold55244__1_contigs__length_14396 LN:14396 skipping SAM header line: @SQ SN:PGA_scaffold55254__1_contigs__length_11704 LN:11704 skipping SAM header line: @SQ SN:PGA_scaffold55255__1_contigs__length_20504 LN:20504 skipping SAM header line: @SQ SN:PGA_scaffold55256__1_contigs__length_16575 LN:16575 skipping SAM header line: @SQ SN:PGA_scaffold55257__1_contigs__length_12274 LN:12274 skipping SAM header line: @SQ SN:PGA_scaffold55259__1_contigs__length_27066 LN:27066 skipping SAM header line: @SQ SN:PGA_scaffold55261__1_contigs__length_18864 LN:18864 skipping SAM header line: @SQ SN:PGA_scaffold55262__1_contigs__length_14926 LN:14926 skipping SAM header line: @SQ SN:PGA_scaffold55265__1_contigs__length_43075 LN:43075 skipping SAM header line: @SQ SN:PGA_scaffold55268__1_contigs__length_13095 LN:13095 skipping SAM header line: @SQ SN:PGA_scaffold55269__1_contigs__length_12376 LN:12376 skipping SAM header line: @SQ SN:PGA_scaffold55273__1_contigs__length_13343 LN:13343 skipping SAM header line: @SQ SN:PGA_scaffold55274__1_contigs__length_24803 LN:24803 skipping SAM header line: @SQ SN:PGA_scaffold55275__1_contigs__length_16503 LN:16503 skipping SAM header line: @SQ SN:PGA_scaffold55278__1_contigs__length_54668 LN:54668 skipping SAM header line: @SQ SN:PGA_scaffold55279__1_contigs__length_14909 LN:14909 skipping SAM header line: @SQ SN:PGA_scaffold55286__1_contigs__length_12413 LN:12413 skipping SAM header line: @SQ SN:PGA_scaffold55287__1_contigs__length_11004 LN:11004 skipping SAM header line: @SQ SN:PGA_scaffold55290__1_contigs__length_16300 LN:16300 skipping SAM header line: @SQ SN:PGA_scaffold55294__1_contigs__length_17063 LN:17063 skipping SAM header line: @SQ SN:PGA_scaffold55296__1_contigs__length_51595 LN:51595 skipping SAM header line: @SQ SN:PGA_scaffold55298__1_contigs__length_13382 LN:13382 skipping SAM header line: @SQ SN:PGA_scaffold55301__1_contigs__length_11234 LN:11234 skipping SAM header line: @SQ SN:PGA_scaffold55312__1_contigs__length_15052 LN:15052 skipping SAM header line: @SQ SN:PGA_scaffold55313__1_contigs__length_20879 LN:20879 skipping SAM header line: @SQ SN:PGA_scaffold55314__1_contigs__length_35295 LN:35295 skipping SAM header line: @SQ SN:PGA_scaffold55315__1_contigs__length_11554 LN:11554 skipping SAM header line: @SQ SN:PGA_scaffold55320__1_contigs__length_10627 LN:10627 skipping SAM header line: @SQ SN:PGA_scaffold55345__1_contigs__length_69732 LN:69732 skipping SAM header line: @SQ SN:PGA_scaffold55350__1_contigs__length_22249 LN:22249 skipping SAM header line: @SQ SN:PGA_scaffold55351__1_contigs__length_12197 LN:12197 skipping SAM header line: @SQ SN:PGA_scaffold55353__1_contigs__length_13321 LN:13321 skipping SAM header line: @SQ SN:PGA_scaffold55354__1_contigs__length_26819 LN:26819 skipping SAM header line: @SQ SN:PGA_scaffold55355__1_contigs__length_18035 LN:18035 skipping SAM header line: @SQ SN:PGA_scaffold55359__1_contigs__length_33158 LN:33158 skipping SAM header line: @SQ SN:PGA_scaffold55360__1_contigs__length_14904 LN:14904 skipping SAM header line: @SQ SN:PGA_scaffold55363__1_contigs__length_25886 LN:25886 skipping SAM header line: @SQ SN:PGA_scaffold55365__1_contigs__length_17101 LN:17101 skipping SAM header line: @SQ SN:PGA_scaffold55367__1_contigs__length_18647 LN:18647 skipping SAM header line: @SQ SN:PGA_scaffold55374__1_contigs__length_17592 LN:17592 skipping SAM header line: @SQ SN:PGA_scaffold55375__1_contigs__length_51625 LN:51625 skipping SAM header line: @SQ SN:PGA_scaffold55377__1_contigs__length_13962 LN:13962 skipping SAM header line: @SQ SN:PGA_scaffold55378__1_contigs__length_34882 LN:34882 skipping SAM header line: @SQ SN:PGA_scaffold55380__1_contigs__length_20698 LN:20698 skipping SAM header line: @SQ SN:PGA_scaffold55381__1_contigs__length_30600 LN:30600 skipping SAM header line: @SQ SN:PGA_scaffold55383__1_contigs__length_17253 LN:17253 skipping SAM header line: @SQ SN:PGA_scaffold55384__1_contigs__length_12158 LN:12158 skipping SAM header line: @SQ SN:PGA_scaffold55385__1_contigs__length_12956 LN:12956 skipping SAM header line: @SQ SN:PGA_scaffold55421__1_contigs__length_10536 LN:10536 skipping SAM header line: @SQ SN:PGA_scaffold55462__1_contigs__length_10959 LN:10959 skipping SAM header line: @SQ SN:PGA_scaffold55508__1_contigs__length_10122 LN:10122 skipping SAM header line: @SQ SN:PGA_scaffold55532__1_contigs__length_10796 LN:10796 skipping SAM header line: @SQ SN:PGA_scaffold55577__1_contigs__length_10513 LN:10513 skipping SAM header line: @SQ SN:PGA_scaffold55638__1_contigs__length_11156 LN:11156 skipping SAM header line: @SQ SN:PGA_scaffold55640__1_contigs__length_10558 LN:10558 skipping SAM header line: @SQ SN:PGA_scaffold55649__1_contigs__length_11558 LN:11558 skipping SAM header line: @SQ SN:PGA_scaffold55655__1_contigs__length_10143 LN:10143 skipping SAM header line: @SQ SN:PGA_scaffold55660__1_contigs__length_10137 LN:10137 skipping SAM header line: @SQ SN:PGA_scaffold55680__1_contigs__length_26354 LN:26354 skipping SAM header line: @SQ SN:PGA_scaffold55681__1_contigs__length_11504 LN:11504 skipping SAM header line: @SQ SN:PGA_scaffold55687__1_contigs__length_19196 LN:19196 skipping SAM header line: @SQ SN:PGA_scaffold55689__1_contigs__length_28897 LN:28897 skipping SAM header line: @SQ SN:PGA_scaffold55697__1_contigs__length_10718 LN:10718 skipping SAM header line: @SQ SN:PGA_scaffold55700__1_contigs__length_17384 LN:17384 skipping SAM header line: @SQ SN:PGA_scaffold55710__1_contigs__length_17064 LN:17064 skipping SAM header line: @SQ SN:PGA_scaffold55711__1_contigs__length_39787 LN:39787 skipping SAM header line: @SQ SN:PGA_scaffold55712__1_contigs__length_14233 LN:14233 skipping SAM header line: @SQ SN:PGA_scaffold55713__1_contigs__length_11171 LN:11171 skipping SAM header line: @SQ SN:PGA_scaffold55714__1_contigs__length_36372 LN:36372 skipping SAM header line: @SQ SN:PGA_scaffold55715__1_contigs__length_14986 LN:14986 skipping SAM header line: @SQ SN:PGA_scaffold55720__1_contigs__length_11319 LN:11319 skipping SAM header line: @SQ SN:PGA_scaffold55721__1_contigs__length_17989 LN:17989 skipping SAM header line: @SQ SN:PGA_scaffold55722__1_contigs__length_14208 LN:14208 skipping SAM header line: @SQ SN:PGA_scaffold55724__1_contigs__length_16542 LN:16542 skipping SAM header line: @SQ SN:PGA_scaffold55725__1_contigs__length_13995 LN:13995 skipping SAM header line: @SQ SN:PGA_scaffold55726__1_contigs__length_16587 LN:16587 skipping SAM header line: @SQ SN:PGA_scaffold55745__1_contigs__length_39718 LN:39718 skipping SAM header line: @SQ SN:PGA_scaffold55747__1_contigs__length_42692 LN:42692 skipping SAM header line: @SQ SN:PGA_scaffold55753__1_contigs__length_17369 LN:17369 skipping SAM header line: @SQ SN:PGA_scaffold55754__1_contigs__length_13032 LN:13032 skipping SAM header line: @SQ SN:PGA_scaffold55763__1_contigs__length_14387 LN:14387 skipping SAM header line: @SQ SN:PGA_scaffold55774__1_contigs__length_15606 LN:15606 skipping SAM header line: @SQ SN:PGA_scaffold55778__1_contigs__length_10434 LN:10434 skipping SAM header line: @SQ SN:PGA_scaffold55779__1_contigs__length_10071 LN:10071 skipping SAM header line: @SQ SN:PGA_scaffold55792__1_contigs__length_11898 LN:11898 skipping SAM header line: @SQ SN:PGA_scaffold55798__1_contigs__length_11307 LN:11307 skipping SAM header line: @SQ SN:PGA_scaffold55809__1_contigs__length_14044 LN:14044 skipping SAM header line: @SQ SN:PGA_scaffold55811__1_contigs__length_14545 LN:14545 skipping SAM header line: @SQ SN:PGA_scaffold55813__1_contigs__length_16725 LN:16725 skipping SAM header line: @SQ SN:PGA_scaffold55814__1_contigs__length_15750 LN:15750 skipping SAM header line: @SQ SN:PGA_scaffold55815__1_contigs__length_10780 LN:10780 skipping SAM header line: @SQ SN:PGA_scaffold55817__1_contigs__length_14050 LN:14050 skipping SAM header line: @SQ SN:PGA_scaffold55827__1_contigs__length_17274 LN:17274 skipping SAM header line: @SQ SN:PGA_scaffold55829__1_contigs__length_27351 LN:27351 skipping SAM header line: @SQ SN:PGA_scaffold55835__1_contigs__length_29652 LN:29652 skipping SAM header line: @SQ SN:PGA_scaffold55836__1_contigs__length_14508 LN:14508 skipping SAM header line: @SQ SN:PGA_scaffold55841__1_contigs__length_13727 LN:13727 skipping SAM header line: @SQ SN:PGA_scaffold55845__1_contigs__length_13359 LN:13359 skipping SAM header line: @SQ SN:PGA_scaffold55855__1_contigs__length_34489 LN:34489 skipping SAM header line: @SQ SN:PGA_scaffold55857__1_contigs__length_16698 LN:16698 skipping SAM header line: @SQ SN:PGA_scaffold55858__1_contigs__length_12294 LN:12294 skipping SAM header line: @SQ SN:PGA_scaffold55860__1_contigs__length_50662 LN:50662 skipping SAM header line: @SQ SN:PGA_scaffold55880__1_contigs__length_26569 LN:26569 skipping SAM header line: @SQ SN:PGA_scaffold55902__1_contigs__length_22899 LN:22899 skipping SAM header line: @SQ SN:PGA_scaffold55938__1_contigs__length_11899 LN:11899 skipping SAM header line: @SQ SN:PGA_scaffold55939__1_contigs__length_15504 LN:15504 skipping SAM header line: @SQ SN:PGA_scaffold55973__1_contigs__length_17533 LN:17533 skipping SAM header line: @SQ SN:PGA_scaffold55979__1_contigs__length_33616 LN:33616 skipping SAM header line: @SQ SN:PGA_scaffold55985__1_contigs__length_17195 LN:17195 skipping SAM header line: @SQ SN:PGA_scaffold55988__1_contigs__length_26602 LN:26602 skipping SAM header line: @SQ SN:PGA_scaffold56009__1_contigs__length_11223 LN:11223 skipping SAM header line: @SQ SN:PGA_scaffold56014__1_contigs__length_12441 LN:12441 skipping SAM header line: @SQ SN:PGA_scaffold56016__1_contigs__length_10736 LN:10736 skipping SAM header line: @SQ SN:PGA_scaffold56019__1_contigs__length_15008 LN:15008 skipping SAM header line: @SQ SN:PGA_scaffold56024__1_contigs__length_10541 LN:10541 skipping SAM header line: @SQ SN:PGA_scaffold56026__1_contigs__length_29839 LN:29839 skipping SAM header line: @SQ SN:PGA_scaffold56064__1_contigs__length_16175 LN:16175 skipping SAM header line: @SQ SN:PGA_scaffold56081__1_contigs__length_20450 LN:20450 skipping SAM header line: @SQ SN:PGA_scaffold56083__1_contigs__length_19051 LN:19051 skipping SAM header line: @SQ SN:PGA_scaffold56091__1_contigs__length_39544 LN:39544 skipping SAM header line: @SQ SN:PGA_scaffold56116__1_contigs__length_20901 LN:20901 skipping SAM header line: @SQ SN:PGA_scaffold56125__1_contigs__length_14392 LN:14392 skipping SAM header line: @SQ SN:PGA_scaffold56142__1_contigs__length_10160 LN:10160 skipping SAM header line: @SQ SN:PGA_scaffold56154__1_contigs__length_14463 LN:14463 skipping SAM header line: @SQ SN:PGA_scaffold56176__1_contigs__length_14418 LN:14418 skipping SAM header line: @SQ SN:PGA_scaffold56186__1_contigs__length_13349 LN:13349 skipping SAM header line: @SQ SN:PGA_scaffold56187__1_contigs__length_24105 LN:24105 skipping SAM header line: @SQ SN:PGA_scaffold56230__1_contigs__length_13082 LN:13082 skipping SAM header line: @SQ SN:PGA_scaffold56245__1_contigs__length_21244 LN:21244 skipping SAM header line: @SQ SN:PGA_scaffold56261__1_contigs__length_13085 LN:13085 skipping SAM header line: @SQ SN:PGA_scaffold56268__1_contigs__length_16080 LN:16080 skipping SAM header line: @SQ SN:PGA_scaffold56275__1_contigs__length_11474 LN:11474 skipping SAM header line: @SQ SN:PGA_scaffold56308__1_contigs__length_11602 LN:11602 skipping SAM header line: @SQ SN:PGA_scaffold56311__1_contigs__length_10546 LN:10546 skipping SAM header line: @SQ SN:PGA_scaffold56313__1_contigs__length_11286 LN:11286 skipping SAM header line: @SQ SN:PGA_scaffold56319__1_contigs__length_13227 LN:13227 skipping SAM header line: @SQ SN:PGA_scaffold56338__1_contigs__length_12796 LN:12796 skipping SAM header line: @SQ SN:PGA_scaffold56341__1_contigs__length_12059 LN:12059 skipping SAM header line: @SQ SN:PGA_scaffold56347__1_contigs__length_13124 LN:13124 skipping SAM header line: @SQ SN:PGA_scaffold56365__1_contigs__length_56315 LN:56315 skipping SAM header line: @SQ SN:PGA_scaffold56374__1_contigs__length_10090 LN:10090 skipping SAM header line: @SQ SN:PGA_scaffold56375__1_contigs__length_33113 LN:33113 skipping SAM header line: @SQ SN:PGA_scaffold56376__1_contigs__length_28896 LN:28896 skipping SAM header line: @SQ SN:PGA_scaffold56393__1_contigs__length_13084 LN:13084 skipping SAM header line: @SQ SN:PGA_scaffold56399__1_contigs__length_15266 LN:15266 skipping SAM header line: @SQ SN:PGA_scaffold56403__1_contigs__length_27233 LN:27233 skipping SAM header line: @SQ SN:PGA_scaffold56411__1_contigs__length_14196 LN:14196 skipping SAM header line: @SQ SN:PGA_scaffold56417__1_contigs__length_13131 LN:13131 skipping SAM header line: @SQ SN:PGA_scaffold56419__1_contigs__length_20741 LN:20741 skipping SAM header line: @SQ SN:PGA_scaffold56428__1_contigs__length_13217 LN:13217 skipping SAM header line: @SQ SN:PGA_scaffold56433__1_contigs__length_17759 LN:17759 skipping SAM header line: @SQ SN:PGA_scaffold56436__1_contigs__length_16300 LN:16300 skipping SAM header line: @SQ SN:PGA_scaffold56440__1_contigs__length_10078 LN:10078 skipping SAM header line: @SQ SN:PGA_scaffold56442__1_contigs__length_16305 LN:16305 skipping SAM header line: @SQ SN:PGA_scaffold56443__1_contigs__length_12552 LN:12552 skipping SAM header line: @SQ SN:PGA_scaffold56457__1_contigs__length_13071 LN:13071 skipping SAM header line: @SQ SN:PGA_scaffold56463__1_contigs__length_12558 LN:12558 skipping SAM header line: @SQ SN:PGA_scaffold56465__1_contigs__length_19588 LN:19588 skipping SAM header line: @SQ SN:PGA_scaffold56467__1_contigs__length_18178 LN:18178 skipping SAM header line: @SQ SN:PGA_scaffold56475__1_contigs__length_14575 LN:14575 skipping SAM header line: @SQ SN:PGA_scaffold56489__1_contigs__length_12439 LN:12439 skipping SAM header line: @SQ SN:PGA_scaffold56494__1_contigs__length_10010 LN:10010 skipping SAM header line: @SQ SN:PGA_scaffold56499__1_contigs__length_12010 LN:12010 skipping SAM header line: @SQ SN:PGA_scaffold56500__1_contigs__length_11740 LN:11740 skipping SAM header line: @SQ SN:PGA_scaffold56503__1_contigs__length_10036 LN:10036 skipping SAM header line: @SQ SN:PGA_scaffold56506__1_contigs__length_25305 LN:25305 skipping SAM header line: @SQ SN:PGA_scaffold56509__1_contigs__length_19298 LN:19298 skipping SAM header line: @SQ SN:PGA_scaffold56518__1_contigs__length_13579 LN:13579 skipping SAM header line: @SQ SN:PGA_scaffold56527__1_contigs__length_13112 LN:13112 skipping SAM header line: @SQ SN:PGA_scaffold56529__1_contigs__length_12800 LN:12800 skipping SAM header line: @SQ SN:PGA_scaffold56535__1_contigs__length_21486 LN:21486 skipping SAM header line: @SQ SN:PGA_scaffold56536__1_contigs__length_11176 LN:11176 skipping SAM header line: @SQ SN:PGA_scaffold56542__1_contigs__length_24721 LN:24721 skipping SAM header line: @SQ SN:PGA_scaffold56547__1_contigs__length_12407 LN:12407 skipping SAM header line: @SQ SN:PGA_scaffold56551__1_contigs__length_13479 LN:13479 skipping SAM header line: @SQ SN:PGA_scaffold56553__1_contigs__length_13134 LN:13134 skipping SAM header line: @SQ SN:PGA_scaffold56574__1_contigs__length_17329 LN:17329 skipping SAM header line: @SQ SN:PGA_scaffold56579__1_contigs__length_23699 LN:23699 skipping SAM header line: @SQ SN:PGA_scaffold56582__1_contigs__length_18210 LN:18210 skipping SAM header line: @SQ SN:PGA_scaffold56590__1_contigs__length_14998 LN:14998 skipping SAM header line: @SQ SN:PGA_scaffold56592__1_contigs__length_19589 LN:19589 skipping SAM header line: @SQ SN:PGA_scaffold56595__1_contigs__length_20833 LN:20833 skipping SAM header line: @SQ SN:PGA_scaffold56596__1_contigs__length_12555 LN:12555 skipping SAM header line: @SQ SN:PGA_scaffold56599__1_contigs__length_12723 LN:12723 skipping SAM header line: @SQ SN:PGA_scaffold56602__1_contigs__length_17823 LN:17823 skipping SAM header line: @SQ SN:PGA_scaffold56606__1_contigs__length_14889 LN:14889 skipping SAM header line: @SQ SN:PGA_scaffold56607__1_contigs__length_15577 LN:15577 skipping SAM header line: @SQ SN:PGA_scaffold56608__1_contigs__length_12358 LN:12358 skipping SAM header line: @SQ SN:PGA_scaffold56609__1_contigs__length_10523 LN:10523 skipping SAM header line: @SQ SN:PGA_scaffold56610__1_contigs__length_11746 LN:11746 skipping SAM header line: @SQ SN:PGA_scaffold56611__1_contigs__length_19943 LN:19943 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold56631__1_contigs__length_19701 LN:19701 skipping SAM header line: @SQ SN:PGA_scaffold56634__1_contigs__length_14842 LN:14842 skipping SAM header line: @SQ SN:PGA_scaffold56635__1_contigs__length_34227 LN:34227 skipping SAM header line: @SQ SN:PGA_scaffold56639__1_contigs__length_16062 LN:16062 skipping SAM header line: @SQ SN:PGA_scaffold56644__1_contigs__length_23869 LN:23869 skipping SAM header line: @SQ SN:PGA_scaffold56646__1_contigs__length_12978 LN:12978 skipping SAM header line: @SQ SN:PGA_scaffold56648__1_contigs__length_11346 LN:11346 skipping SAM header line: @SQ SN:PGA_scaffold56649__1_contigs__length_18919 LN:18919 skipping SAM header line: @SQ SN:PGA_scaffold56650__1_contigs__length_33575 LN:33575 skipping SAM header line: @SQ SN:PGA_scaffold56651__1_contigs__length_24606 LN:24606 skipping SAM header line: @SQ SN:PGA_scaffold56652__1_contigs__length_44611 LN:44611 skipping SAM header line: @SQ SN:PGA_scaffold56653__1_contigs__length_18615 LN:18615 skipping SAM header line: @SQ SN:PGA_scaffold56663__1_contigs__length_11214 LN:11214 skipping SAM header line: @SQ SN:PGA_scaffold56664__1_contigs__length_22031 LN:22031 skipping SAM header line: @SQ SN:PGA_scaffold56671__1_contigs__length_32469 LN:32469 skipping SAM header line: @SQ SN:PGA_scaffold56672__1_contigs__length_12651 LN:12651 skipping SAM header line: @SQ SN:PGA_scaffold56675__1_contigs__length_18994 LN:18994 skipping SAM header line: @SQ SN:PGA_scaffold56676__1_contigs__length_20253 LN:20253 skipping SAM header line: @SQ SN:PGA_scaffold56691__1_contigs__length_31095 LN:31095 skipping SAM header line: @SQ SN:PGA_scaffold56712__1_contigs__length_26611 LN:26611 skipping SAM header line: @SQ SN:PGA_scaffold56715__1_contigs__length_11138 LN:11138 skipping SAM header line: @SQ SN:PGA_scaffold56716__1_contigs__length_22583 LN:22583 skipping SAM header line: @SQ SN:PGA_scaffold56720__1_contigs__length_40419 LN:40419 skipping SAM header line: @SQ SN:PGA_scaffold56721__1_contigs__length_22627 LN:22627 skipping SAM header line: @SQ SN:PGA_scaffold56722__1_contigs__length_46018 LN:46018 skipping SAM header line: @SQ SN:PGA_scaffold56723__1_contigs__length_16153 LN:16153 skipping SAM header line: @SQ SN:PGA_scaffold56724__1_contigs__length_20256 LN:20256 skipping SAM header line: @SQ SN:PGA_scaffold56725__1_contigs__length_15951 LN:15951 skipping SAM header line: @SQ SN:PGA_scaffold56729__1_contigs__length_10098 LN:10098 skipping SAM header line: @SQ SN:PGA_scaffold56756__1_contigs__length_10774 LN:10774 skipping SAM header line: @SQ SN:PGA_scaffold56763__1_contigs__length_11935 LN:11935 skipping SAM header line: @SQ SN:PGA_scaffold56881__1_contigs__length_13172 LN:13172 skipping SAM header line: @SQ SN:PGA_scaffold56884__1_contigs__length_10946 LN:10946 skipping SAM header line: @SQ SN:PGA_scaffold56892__1_contigs__length_11473 LN:11473 skipping SAM header line: @SQ SN:PGA_scaffold56909__1_contigs__length_10744 LN:10744 skipping SAM header line: @SQ SN:PGA_scaffold56910__1_contigs__length_11963 LN:11963 skipping SAM header line: @SQ SN:PGA_scaffold56911__1_contigs__length_12869 LN:12869 skipping SAM header line: @SQ SN:PGA_scaffold56913__1_contigs__length_10070 LN:10070 skipping SAM header line: @SQ SN:PGA_scaffold56914__1_contigs__length_19994 LN:19994 skipping SAM header line: @SQ SN:PGA_scaffold56915__1_contigs__length_14016 LN:14016 skipping SAM header line: @SQ SN:PGA_scaffold56916__1_contigs__length_32078 LN:32078 skipping SAM header line: @SQ SN:PGA_scaffold56917__1_contigs__length_16343 LN:16343 skipping SAM header line: @SQ SN:PGA_scaffold56920__1_contigs__length_14216 LN:14216 skipping SAM header line: @SQ SN:PGA_scaffold56931__1_contigs__length_13762 LN:13762 skipping SAM header line: @SQ SN:PGA_scaffold56934__1_contigs__length_28323 LN:28323 skipping SAM header line: @SQ SN:PGA_scaffold56936__1_contigs__length_21861 LN:21861 skipping SAM header line: @SQ SN:PGA_scaffold56938__1_contigs__length_11684 LN:11684 skipping SAM header line: @SQ SN:PGA_scaffold56939__1_contigs__length_14281 LN:14281 skipping SAM header line: @SQ SN:PGA_scaffold56941__1_contigs__length_10058 LN:10058 skipping SAM header line: @SQ SN:PGA_scaffold56943__1_contigs__length_24018 LN:24018 skipping SAM header line: @SQ SN:PGA_scaffold56944__1_contigs__length_16559 LN:16559 skipping SAM header line: @SQ SN:PGA_scaffold56946__1_contigs__length_36592 LN:36592 skipping SAM header line: @SQ SN:PGA_scaffold56947__1_contigs__length_20768 LN:20768 skipping SAM header line: @SQ SN:PGA_scaffold56948__1_contigs__length_11969 LN:11969 skipping SAM header line: @SQ SN:PGA_scaffold56949__1_contigs__length_11153 LN:11153 skipping SAM header line: @SQ SN:PGA_scaffold56950__1_contigs__length_13582 LN:13582 skipping SAM header line: @SQ SN:PGA_scaffold56951__1_contigs__length_14373 LN:14373 skipping SAM header line: @SQ SN:PGA_scaffold56968__1_contigs__length_14127 LN:14127 skipping SAM header line: @SQ SN:PGA_scaffold56971__1_contigs__length_12014 LN:12014 skipping SAM header line: @SQ SN:PGA_scaffold56975__1_contigs__length_13636 LN:13636 skipping SAM header line: @SQ SN:PGA_scaffold56978__1_contigs__length_21647 LN:21647 skipping SAM header line: @SQ SN:PGA_scaffold56985__1_contigs__length_13715 LN:13715 skipping SAM header line: @SQ SN:PGA_scaffold56988__1_contigs__length_15181 LN:15181 skipping SAM header line: @SQ SN:PGA_scaffold56989__1_contigs__length_15907 LN:15907 skipping SAM header line: @SQ SN:PGA_scaffold56991__1_contigs__length_11314 LN:11314 skipping SAM header line: @SQ SN:PGA_scaffold56992__1_contigs__length_18368 LN:18368 skipping SAM header line: @SQ SN:PGA_scaffold57007__1_contigs__length_15181 LN:15181 skipping SAM header line: @SQ SN:PGA_scaffold57011__1_contigs__length_14727 LN:14727 skipping SAM header line: @SQ SN:PGA_scaffold57014__1_contigs__length_17651 LN:17651 skipping SAM header line: @SQ SN:PGA_scaffold57027__1_contigs__length_10516 LN:10516 skipping SAM header line: @SQ SN:PGA_scaffold57028__1_contigs__length_12789 LN:12789 skipping SAM header line: @SQ SN:PGA_scaffold57031__1_contigs__length_12772 LN:12772 skipping SAM header line: @SQ SN:PGA_scaffold57035__1_contigs__length_23686 LN:23686 skipping SAM header line: @SQ SN:PGA_scaffold57040__1_contigs__length_10011 LN:10011 skipping SAM header line: @SQ SN:PGA_scaffold57046__1_contigs__length_10795 LN:10795 skipping SAM header line: @SQ SN:PGA_scaffold57052__1_contigs__length_17098 LN:17098 skipping SAM header line: @SQ SN:PGA_scaffold57053__1_contigs__length_12625 LN:12625 skipping SAM header line: @SQ SN:PGA_scaffold57057__1_contigs__length_17661 LN:17661 skipping SAM header line: @SQ SN:PGA_scaffold57059__1_contigs__length_17716 LN:17716 skipping SAM header line: @SQ SN:PGA_scaffold57065__1_contigs__length_20817 LN:20817 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57108__1_contigs__length_20164 LN:20164 skipping SAM header line: @SQ SN:PGA_scaffold57125__1_contigs__length_17547 LN:17547 skipping SAM header line: @SQ SN:PGA_scaffold57133__1_contigs__length_26233 LN:26233 skipping SAM header line: @SQ SN:PGA_scaffold57139__1_contigs__length_21298 LN:21298 skipping SAM header line: @SQ SN:PGA_scaffold57144__1_contigs__length_24604 LN:24604 skipping SAM header line: @SQ SN:PGA_scaffold57145__1_contigs__length_10352 LN:10352 skipping SAM header line: @SQ SN:PGA_scaffold57146__1_contigs__length_14053 LN:14053 skipping SAM header line: @SQ SN:PGA_scaffold57161__1_contigs__length_14841 LN:14841 skipping SAM header line: @SQ SN:PGA_scaffold57162__1_contigs__length_24973 LN:24973 skipping SAM header line: @SQ SN:PGA_scaffold57168__1_contigs__length_10032 LN:10032 skipping SAM header line: @SQ SN:PGA_scaffold57170__1_contigs__length_20868 LN:20868 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57245__1_contigs__length_14215 LN:14215 skipping SAM header line: @SQ SN:PGA_scaffold57246__1_contigs__length_10239 LN:10239 skipping SAM header line: @SQ SN:PGA_scaffold57261__1_contigs__length_16257 LN:16257 skipping SAM header line: @SQ SN:PGA_scaffold57268__1_contigs__length_12891 LN:12891 skipping SAM header line: @SQ SN:PGA_scaffold57284__1_contigs__length_13129 LN:13129 skipping SAM header line: @SQ SN:PGA_scaffold57286__1_contigs__length_13430 LN:13430 skipping SAM header line: @SQ SN:PGA_scaffold57290__1_contigs__length_10391 LN:10391 skipping SAM header line: @SQ SN:PGA_scaffold57291__1_contigs__length_10074 LN:10074 skipping SAM header line: @SQ SN:PGA_scaffold57296__1_contigs__length_20734 LN:20734 skipping SAM header line: @SQ SN:PGA_scaffold57298__1_contigs__length_31957 LN:31957 skipping SAM header line: @SQ SN:PGA_scaffold57300__1_contigs__length_19405 LN:19405 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57336__1_contigs__length_21091 LN:21091 skipping SAM header line: @SQ SN:PGA_scaffold57338__1_contigs__length_22983 LN:22983 skipping SAM header line: @SQ SN:PGA_scaffold57347__1_contigs__length_11335 LN:11335 skipping SAM header line: @SQ SN:PGA_scaffold57351__1_contigs__length_10777 LN:10777 skipping SAM header line: @SQ SN:PGA_scaffold57355__1_contigs__length_14975 LN:14975 skipping SAM header line: @SQ SN:PGA_scaffold57359__1_contigs__length_20709 LN:20709 skipping SAM header line: @SQ SN:PGA_scaffold57360__1_contigs__length_17628 LN:17628 skipping SAM header line: @SQ SN:PGA_scaffold57361__1_contigs__length_21891 LN:21891 skipping SAM header line: @SQ SN:PGA_scaffold57365__1_contigs__length_12556 LN:12556 skipping SAM header line: @SQ SN:PGA_scaffold57369__1_contigs__length_12683 LN:12683 skipping SAM header line: @SQ SN:PGA_scaffold57371__1_contigs__length_10127 LN:10127 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57419__1_contigs__length_56657 LN:56657 skipping SAM header line: @SQ SN:PGA_scaffold57421__1_contigs__length_15469 LN:15469 skipping SAM header line: @SQ SN:PGA_scaffold57422__1_contigs__length_21905 LN:21905 skipping SAM header line: @SQ SN:PGA_scaffold57424__1_contigs__length_19233 LN:19233 skipping SAM header line: @SQ SN:PGA_scaffold57425__1_contigs__length_15539 LN:15539 skipping SAM header line: @SQ SN:PGA_scaffold57430__1_contigs__length_17331 LN:17331 skipping SAM header line: @SQ SN:PGA_scaffold57435__1_contigs__length_39348 LN:39348 skipping SAM header line: @SQ SN:PGA_scaffold57440__1_contigs__length_27602 LN:27602 skipping SAM header line: @SQ SN:PGA_scaffold57454__1_contigs__length_22572 LN:22572 skipping SAM header line: @SQ SN:PGA_scaffold57457__1_contigs__length_13117 LN:13117 skipping SAM header line: @SQ SN:PGA_scaffold57463__1_contigs__length_20179 LN:20179 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57499__1_contigs__length_23438 LN:23438 skipping SAM header line: @SQ SN:PGA_scaffold57500__1_contigs__length_18125 LN:18125 skipping SAM header line: @SQ SN:PGA_scaffold57501__1_contigs__length_11900 LN:11900 skipping SAM header line: @SQ SN:PGA_scaffold57503__1_contigs__length_11057 LN:11057 skipping SAM header line: @SQ SN:PGA_scaffold57504__1_contigs__length_21944 LN:21944 skipping SAM header line: @SQ SN:PGA_scaffold57505__1_contigs__length_14425 LN:14425 skipping SAM header line: @SQ SN:PGA_scaffold57507__1_contigs__length_22182 LN:22182 skipping SAM header line: @SQ SN:PGA_scaffold57508__1_contigs__length_11089 LN:11089 skipping SAM header line: @SQ SN:PGA_scaffold57509__1_contigs__length_19607 LN:19607 skipping SAM header line: @SQ SN:PGA_scaffold57510__1_contigs__length_39178 LN:39178 skipping SAM header line: @SQ SN:PGA_scaffold57512__1_contigs__length_20259 LN:20259 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57545__1_contigs__length_15071 LN:15071 skipping SAM header line: @SQ SN:PGA_scaffold57546__1_contigs__length_35410 LN:35410 skipping SAM header line: @SQ SN:PGA_scaffold57547__1_contigs__length_11204 LN:11204 skipping SAM header line: @SQ SN:PGA_scaffold57548__1_contigs__length_15535 LN:15535 skipping SAM header line: @SQ SN:PGA_scaffold57550__1_contigs__length_25127 LN:25127 skipping SAM header line: @SQ SN:PGA_scaffold57552__1_contigs__length_19195 LN:19195 skipping SAM header line: @SQ SN:PGA_scaffold57554__1_contigs__length_15712 LN:15712 skipping SAM header line: @SQ SN:PGA_scaffold57555__1_contigs__length_12813 LN:12813 skipping SAM header line: @SQ SN:PGA_scaffold57556__1_contigs__length_16023 LN:16023 skipping SAM header line: @SQ SN:PGA_scaffold57558__1_contigs__length_35635 LN:35635 skipping SAM header line: @SQ SN:PGA_scaffold57559__1_contigs__length_14832 LN:14832 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57709__1_contigs__length_16996 LN:16996 skipping SAM header line: @SQ SN:PGA_scaffold57710__1_contigs__length_31661 LN:31661 skipping SAM header line: @SQ SN:PGA_scaffold57711__1_contigs__length_39713 LN:39713 skipping SAM header line: @SQ SN:PGA_scaffold57712__1_contigs__length_24059 LN:24059 skipping SAM header line: @SQ SN:PGA_scaffold57714__1_contigs__length_29175 LN:29175 skipping SAM header line: @SQ SN:PGA_scaffold57717__1_contigs__length_50311 LN:50311 skipping SAM header line: @SQ SN:PGA_scaffold57718__1_contigs__length_15548 LN:15548 skipping SAM header line: @SQ SN:PGA_scaffold57720__1_contigs__length_28119 LN:28119 skipping SAM header line: @SQ SN:PGA_scaffold57721__1_contigs__length_21312 LN:21312 skipping SAM header line: @SQ SN:PGA_scaffold57722__1_contigs__length_13610 LN:13610 skipping SAM header line: @SQ SN:PGA_scaffold57724__1_contigs__length_25741 LN:25741 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57800__1_contigs__length_10494 LN:10494 skipping SAM header line: @SQ SN:PGA_scaffold57808__1_contigs__length_17752 LN:17752 skipping SAM header line: @SQ SN:PGA_scaffold57825__1_contigs__length_12368 LN:12368 skipping SAM header line: @SQ SN:PGA_scaffold57828__1_contigs__length_12730 LN:12730 skipping SAM header line: @SQ SN:PGA_scaffold57837__1_contigs__length_11440 LN:11440 skipping SAM header line: @SQ SN:PGA_scaffold57852__1_contigs__length_22137 LN:22137 skipping SAM header line: @SQ SN:PGA_scaffold57864__1_contigs__length_11081 LN:11081 skipping SAM header line: @SQ SN:PGA_scaffold57865__1_contigs__length_37453 LN:37453 skipping SAM header line: @SQ SN:PGA_scaffold57876__1_contigs__length_15394 LN:15394 skipping SAM header line: @SQ SN:PGA_scaffold57880__1_contigs__length_17965 LN:17965 skipping SAM header line: @SQ SN:PGA_scaffold57881__1_contigs__length_12211 LN:12211 skipping SAM header line: @SQ SN:PGA_scaffold57884__1_contigs__length_38303 LN:38303 skipping SAM header line: @SQ SN:PGA_scaffold57901__1_contigs__length_33405 LN:33405 skipping SAM header line: @SQ SN:PGA_scaffold57902__1_contigs__length_18876 LN:18876 skipping SAM header line: @SQ SN:PGA_scaffold57922__1_contigs__length_25970 LN:25970 skipping SAM header line: @SQ SN:PGA_scaffold57925__1_contigs__length_13412 LN:13412 skipping SAM header line: @SQ SN:PGA_scaffold57934__1_contigs__length_19996 LN:19996 skipping SAM header line: @SQ SN:PGA_scaffold57939__1_contigs__length_19402 LN:19402 skipping SAM header line: @SQ SN:PGA_scaffold57964__1_contigs__length_10844 LN:10844 skipping SAM header line: @SQ SN:PGA_scaffold57971__1_contigs__length_17824 LN:17824 skipping SAM header line: @SQ SN:PGA_scaffold57974__1_contigs__length_13186 LN:13186 skipping SAM header line: @SQ SN:PGA_scaffold57975__1_contigs__length_16686 LN:16686 skipping SAM header line: @SQ SN:PGA_scaffold57988__1_contigs__length_22804 LN:22804 skipping SAM header line: @SQ SN:PGA_scaffold58015__1_contigs__length_17297 LN:17297 skipping SAM header line: @SQ SN:PGA_scaffold58039__1_contigs__length_11638 LN:11638 skipping SAM header line: @SQ SN:PGA_scaffold58041__1_contigs__length_10489 LN:10489 skipping SAM header line: @SQ SN:PGA_scaffold58053__1_contigs__length_21616 LN:21616 skipping SAM header line: @SQ SN:PGA_scaffold58062__1_contigs__length_26971 LN:26971 skipping SAM header line: @SQ SN:PGA_scaffold58076__1_contigs__length_32943 LN:32943 skipping SAM header line: @SQ SN:PGA_scaffold58106__1_contigs__length_15949 LN:15949 skipping SAM header line: @SQ SN:PGA_scaffold58107__1_contigs__length_22678 LN:22678 skipping SAM header line: @SQ SN:PGA_scaffold58120__1_contigs__length_13463 LN:13463 skipping SAM header line: @SQ SN:PGA_scaffold58153__1_contigs__length_25054 LN:25054 skipping SAM header line: @SQ SN:PGA_scaffold58158__1_contigs__length_13122 LN:13122 skipping SAM header line: @SQ SN:PGA_scaffold58159__1_contigs__length_14684 LN:14684 skipping SAM header line: @SQ SN:PGA_scaffold58161__1_contigs__length_14547 LN:14547 skipping SAM header line: @SQ SN:PGA_scaffold58163__1_contigs__length_10684 LN:10684 skipping SAM header line: @SQ SN:PGA_scaffold58180__1_contigs__length_14878 LN:14878 skipping SAM header line: @SQ SN:PGA_scaffold58186__1_contigs__length_22026 LN:22026 skipping SAM header line: @SQ SN:PGA_scaffold58193__1_contigs__length_28311 LN:28311 skipping SAM header line: @SQ SN:PGA_scaffold58196__1_contigs__length_14353 LN:14353 skipping SAM header line: @SQ SN:PGA_scaffold58205__1_contigs__length_11295 LN:11295 skipping SAM header line: @SQ SN:PGA_scaffold58207__1_contigs__length_24307 LN:24307 skipping SAM header line: @SQ SN:PGA_scaffold58208__1_contigs__length_12073 LN:12073 skipping SAM header line: @SQ SN:PGA_scaffold58209__1_contigs__length_10640 LN:10640 skipping SAM header line: @SQ SN:PGA_scaffold58210__1_contigs__length_20258 LN:20258 skipping SAM header line: @SQ SN:PGA_scaffold58212__1_contigs__length_21941 LN:21941 skipping SAM header line: @SQ SN:PGA_scaffold58219__1_contigs__length_21717 LN:21717 skipping SAM header line: @SQ SN:PGA_scaffold58220__1_contigs__length_17936 LN:17936 skipping SAM header line: @SQ SN:PGA_scaffold58221__1_contigs__length_14877 LN:14877 skipping SAM header line: @SQ SN:PGA_scaffold58224__1_contigs__length_11970 LN:11970 skipping SAM header line: @SQ SN:PGA_scaffold58225__1_contigs__length_16472 LN:16472 skipping SAM header line: @SQ SN:PGA_scaffold58231__1_contigs__length_12485 LN:12485 skipping SAM header line: @SQ SN:PGA_scaffold58233__1_contigs__length_15514 LN:15514 skipping SAM header line: @SQ SN:PGA_scaffold58236__1_contigs__length_14404 LN:14404 skipping SAM header line: @SQ SN:PGA_scaffold58238__1_contigs__length_68373 LN:68373 skipping SAM header line: @SQ SN:PGA_scaffold58241__1_contigs__length_11629 LN:11629 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold58275__1_contigs__length_20529 LN:20529 skipping SAM header line: @SQ SN:PGA_scaffold58283__1_contigs__length_21704 LN:21704 skipping SAM header line: @SQ SN:PGA_scaffold58284__1_contigs__length_33826 LN:33826 skipping SAM header line: @SQ SN:PGA_scaffold58290__1_contigs__length_11324 LN:11324 skipping SAM header line: @SQ SN:PGA_scaffold58294__1_contigs__length_16400 LN:16400 skipping SAM header line: @SQ SN:PGA_scaffold58298__1_contigs__length_28444 LN:28444 skipping SAM header line: @SQ SN:PGA_scaffold58300__1_contigs__length_20228 LN:20228 skipping SAM header line: @SQ SN:PGA_scaffold58302__1_contigs__length_11471 LN:11471 skipping SAM header line: @SQ SN:PGA_scaffold58304__1_contigs__length_10109 LN:10109 skipping SAM header line: @SQ SN:PGA_scaffold58309__1_contigs__length_16843 LN:16843 skipping SAM header line: @SQ SN:PGA_scaffold58310__1_contigs__length_19504 LN:19504 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold58361__1_contigs__length_52751 LN:52751 skipping SAM header line: @SQ SN:PGA_scaffold58366__1_contigs__length_37326 LN:37326 skipping SAM header line: @SQ SN:PGA_scaffold58370__1_contigs__length_11988 LN:11988 skipping SAM header line: @SQ SN:PGA_scaffold58371__1_contigs__length_12863 LN:12863 skipping SAM header line: @SQ SN:PGA_scaffold58374__1_contigs__length_15700 LN:15700 skipping SAM header line: @SQ SN:PGA_scaffold58375__1_contigs__length_17690 LN:17690 skipping SAM header line: @SQ SN:PGA_scaffold58376__1_contigs__length_11485 LN:11485 skipping SAM header line: @SQ SN:PGA_scaffold58382__1_contigs__length_41713 LN:41713 skipping SAM header line: @SQ SN:PGA_scaffold58383__1_contigs__length_44366 LN:44366 skipping SAM header line: @SQ SN:PGA_scaffold58388__1_contigs__length_32850 LN:32850 skipping SAM header line: @SQ SN:PGA_scaffold58389__1_contigs__length_22294 LN:22294 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold58414__1_contigs__length_31140 LN:31140 skipping SAM header line: @SQ SN:PGA_scaffold58420__1_contigs__length_10267 LN:10267 skipping SAM header line: @SQ SN:PGA_scaffold58423__1_contigs__length_47054 LN:47054 skipping SAM header line: @SQ SN:PGA_scaffold58431__1_contigs__length_30555 LN:30555 skipping SAM header line: @SQ SN:PGA_scaffold58437__1_contigs__length_27914 LN:27914 skipping SAM header line: @SQ SN:PGA_scaffold58438__1_contigs__length_24205 LN:24205 skipping SAM header line: @SQ SN:PGA_scaffold58439__1_contigs__length_35544 LN:35544 skipping SAM header line: @SQ SN:PGA_scaffold58443__1_contigs__length_34264 LN:34264 skipping SAM header line: @SQ SN:PGA_scaffold58450__1_contigs__length_35181 LN:35181 skipping SAM header line: @SQ SN:PGA_scaffold58456__1_contigs__length_23524 LN:23524 skipping SAM header line: @SQ SN:PGA_scaffold58457__1_contigs__length_21587 LN:21587 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold59065__1_contigs__length_26269 LN:26269 skipping SAM header line: @SQ SN:PGA_scaffold59071__1_contigs__length_12323 LN:12323 skipping SAM header line: @SQ SN:PGA_scaffold59080__1_contigs__length_10460 LN:10460 skipping SAM header line: @SQ SN:PGA_scaffold59082__1_contigs__length_12243 LN:12243 skipping SAM header line: @SQ SN:PGA_scaffold59093__1_contigs__length_14329 LN:14329 skipping SAM header line: @SQ SN:PGA_scaffold59095__1_contigs__length_13389 LN:13389 skipping SAM header line: @SQ SN:PGA_scaffold59096__1_contigs__length_22148 LN:22148 skipping SAM header line: @SQ SN:PGA_scaffold59101__1_contigs__length_18022 LN:18022 skipping SAM header line: @SQ SN:PGA_scaffold59102__1_contigs__length_22817 LN:22817 skipping SAM header line: @SQ SN:PGA_scaffold59104__1_contigs__length_11375 LN:11375 skipping SAM header line: @SQ SN:PGA_scaffold59111__1_contigs__length_11652 LN:11652 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold59154__1_contigs__length_13197 LN:13197 skipping SAM header line: @SQ SN:PGA_scaffold59155__1_contigs__length_10517 LN:10517 skipping SAM header line: @SQ SN:PGA_scaffold59157__1_contigs__length_16404 LN:16404 skipping SAM header line: @SQ SN:PGA_scaffold59159__1_contigs__length_25531 LN:25531 skipping SAM header line: @SQ SN:PGA_scaffold59160__1_contigs__length_18263 LN:18263 skipping SAM header line: @SQ SN:PGA_scaffold59161__1_contigs__length_15653 LN:15653 skipping SAM header line: @SQ SN:PGA_scaffold59165__1_contigs__length_11867 LN:11867 skipping SAM header line: @SQ SN:PGA_scaffold59166__1_contigs__length_30875 LN:30875 skipping SAM header line: @SQ SN:PGA_scaffold59169__1_contigs__length_14356 LN:14356 skipping SAM header line: @SQ SN:PGA_scaffold59171__1_contigs__length_43122 LN:43122 skipping SAM header line: @SQ SN:PGA_scaffold59172__1_contigs__length_10760 LN:10760 skipping SAM header line: @SQ SN:PGA_scaffold59173__1_contigs__length_15971 LN:15971 skipping SAM header line: @SQ SN:PGA_scaffold59176__1_contigs__length_17057 LN:17057 skipping SAM header line: @SQ SN:PGA_scaffold59177__1_contigs__length_14338 LN:14338 skipping SAM header line: @SQ SN:PGA_scaffold59179__1_contigs__length_28169 LN:28169 skipping SAM header line: @SQ SN:PGA_scaffold59182__1_contigs__length_23440 LN:23440 skipping SAM header line: @SQ SN:PGA_scaffold59187__1_contigs__length_11852 LN:11852 skipping SAM header line: @SQ SN:PGA_scaffold59190__1_contigs__length_41883 LN:41883 skipping SAM header line: @SQ SN:PGA_scaffold59192__1_contigs__length_14185 LN:14185 skipping SAM header line: @SQ SN:PGA_scaffold59194__1_contigs__length_17419 LN:17419 skipping SAM header line: @SQ SN:PGA_scaffold59202__1_contigs__length_18368 LN:18368 skipping SAM header line: @SQ SN:PGA_scaffold59203__1_contigs__length_24335 LN:24335 skipping SAM header line: @SQ SN:PGA_scaffold59204__1_contigs__length_27350 LN:27350 skipping SAM header line: @SQ SN:PGA_scaffold59205__1_contigs__length_29285 LN:29285 skipping SAM header line: @SQ SN:PGA_scaffold59236__1_contigs__length_10695 LN:10695 skipping SAM header line: @SQ SN:PGA_scaffold59268__1_contigs__length_11004 LN:11004 skipping SAM header line: @SQ SN:PGA_scaffold59278__1_contigs__length_11047 LN:11047 skipping SAM header line: @SQ SN:PGA_scaffold59288__1_contigs__length_11735 LN:11735 skipping SAM header line: @SQ SN:PGA_scaffold59296__1_contigs__length_11047 LN:11047 skipping SAM header line: @SQ SN:PGA_scaffold59329__1_contigs__length_14610 LN:14610 skipping SAM header line: @SQ SN:PGA_scaffold59331__1_contigs__length_17084 LN:17084 skipping SAM header line: @SQ SN:PGA_scaffold59332__1_contigs__length_22183 LN:22183 skipping SAM header line: @SQ SN:PGA_scaffold59342__1_contigs__length_11147 LN:11147 skipping SAM header line: @SQ SN:PGA_scaffold59344__1_contigs__length_11407 LN:11407 skipping SAM header line: @SQ SN:PGA_scaffold59346__1_contigs__length_14204 LN:14204 skipping SAM header line: @SQ SN:PGA_scaffold59357__1_contigs__length_14068 LN:14068 skipping SAM header line: @SQ SN:PGA_scaffold59365__1_contigs__length_27397 LN:27397 skipping SAM header line: @SQ SN:PGA_scaffold59369__1_contigs__length_13317 LN:13317 skipping SAM header line: @SQ SN:PGA_scaffold59371__1_contigs__length_17798 LN:17798 skipping SAM header line: @SQ SN:PGA_scaffold59374__1_contigs__length_19508 LN:19508 skipping SAM header line: @SQ SN:PGA_scaffold59377__1_contigs__length_38396 LN:38396 skipping SAM header line: @SQ SN:PGA_scaffold59378__1_contigs__length_24010 LN:24010 skipping SAM header line: @SQ SN:PGA_scaffold59380__1_contigs__length_10209 LN:10209 skipping SAM header line: @SQ SN:PGA_scaffold59382__1_contigs__length_12335 LN:12335 skipping SAM header line: @SQ SN:PGA_scaffold59386__1_contigs__length_16730 LN:16730 skipping SAM header line: @SQ SN:PGA_scaffold59388__1_contigs__length_56034 LN:56034 skipping SAM header line: @SQ SN:PGA_scaffold59389__1_contigs__length_19492 LN:19492 skipping SAM header line: @SQ SN:PGA_scaffold59390__1_contigs__length_40508 LN:40508 skipping SAM header line: @SQ SN:PGA_scaffold59391__1_contigs__length_12937 LN:12937 skipping SAM header line: @SQ SN:PGA_scaffold59399__1_contigs__length_20282 LN:20282 skipping SAM header line: @SQ SN:PGA_scaffold59400__1_contigs__length_28045 LN:28045 skipping SAM header line: @SQ SN:PGA_scaffold59401__1_contigs__length_21812 LN:21812 skipping SAM header line: @SQ SN:PGA_scaffold59404__1_contigs__length_40337 LN:40337 skipping SAM header line: @SQ SN:PGA_scaffold59410__1_contigs__length_14177 LN:14177 skipping SAM header line: @SQ SN:PGA_scaffold59411__1_contigs__length_11066 LN:11066 skipping SAM header line: @SQ SN:PGA_scaffold59416__1_contigs__length_16816 LN:16816 skipping SAM header line: @SQ SN:PGA_scaffold59428__1_contigs__length_12442 LN:12442 skipping SAM header line: @SQ SN:PGA_scaffold59429__1_contigs__length_12275 LN:12275 skipping SAM header line: @SQ SN:PGA_scaffold59442__1_contigs__length_13747 LN:13747 skipping SAM header line: @SQ SN:PGA_scaffold59450__1_contigs__length_13529 LN:13529 skipping SAM header line: @SQ SN:PGA_scaffold59457__1_contigs__length_25066 LN:25066 skipping SAM header line: @SQ SN:PGA_scaffold59460__1_contigs__length_22885 LN:22885 skipping SAM header line: @SQ SN:PGA_scaffold59464__1_contigs__length_36159 LN:36159 skipping SAM header line: @SQ SN:PGA_scaffold59465__1_contigs__length_16023 LN:16023 skipping SAM header line: @SQ SN:PGA_scaffold59467__1_contigs__length_21761 LN:21761 skipping SAM header line: @SQ SN:PGA_scaffold59468__1_contigs__length_14023 LN:14023 skipping SAM header line: @SQ SN:PGA_scaffold59472__1_contigs__length_18488 LN:18488 skipping SAM header line: @SQ SN:PGA_scaffold59473__1_contigs__length_10595 LN:10595 skipping SAM header line: @SQ SN:PGA_scaffold59475__1_contigs__length_10306 LN:10306 skipping SAM header line: @SQ SN:PGA_scaffold59476__1_contigs__length_21301 LN:21301 skipping SAM header line: @SQ SN:PGA_scaffold59480__1_contigs__length_11932 LN:11932 skipping SAM header line: @SQ SN:PGA_scaffold59481__1_contigs__length_23462 LN:23462 skipping SAM header line: @SQ SN:PGA_scaffold59483__1_contigs__length_15010 LN:15010 skipping SAM header line: @SQ SN:PGA_scaffold59484__1_contigs__length_25635 LN:25635 skipping SAM header line: @SQ SN:PGA_scaffold59487__1_contigs__length_22840 LN:22840 skipping SAM header line: @SQ SN:PGA_scaffold59493__1_contigs__length_10658 LN:10658 skipping SAM header line: @SQ SN:PGA_scaffold59494__1_contigs__length_14964 LN:14964 skipping SAM header line: @SQ SN:PGA_scaffold59507__1_contigs__length_16621 LN:16621 skipping SAM header line: @SQ SN:PGA_scaffold59540__1_contigs__length_22145 LN:22145 skipping SAM header line: @SQ SN:PGA_scaffold59562__1_contigs__length_19296 LN:19296 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold59630__1_contigs__length_12101 LN:12101 skipping SAM header line: @SQ SN:PGA_scaffold59634__1_contigs__length_10932 LN:10932 skipping SAM header line: @SQ SN:PGA_scaffold59638__1_contigs__length_36226 LN:36226 skipping SAM header line: @SQ SN:PGA_scaffold59642__1_contigs__length_23394 LN:23394 skipping SAM header line: @SQ SN:PGA_scaffold59643__1_contigs__length_15265 LN:15265 skipping SAM header line: @SQ SN:PGA_scaffold59645__1_contigs__length_24898 LN:24898 skipping SAM header line: @SQ SN:PGA_scaffold59646__1_contigs__length_18270 LN:18270 skipping SAM header line: @SQ SN:PGA_scaffold59651__1_contigs__length_13343 LN:13343 skipping SAM header line: @SQ SN:PGA_scaffold59652__1_contigs__length_29005 LN:29005 skipping SAM header line: @SQ SN:PGA_scaffold59656__1_contigs__length_17348 LN:17348 skipping SAM header line: @SQ SN:PGA_scaffold59661__1_contigs__length_17546 LN:17546 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold59698__1_contigs__length_17500 LN:17500 skipping SAM header line: @SQ SN:PGA_scaffold59700__1_contigs__length_11865 LN:11865 skipping SAM header line: @SQ SN:PGA_scaffold59709__1_contigs__length_10491 LN:10491 skipping SAM header line: @SQ SN:PGA_scaffold59717__1_contigs__length_10354 LN:10354 skipping SAM header line: @SQ SN:PGA_scaffold59720__1_contigs__length_11747 LN:11747 skipping SAM header line: @SQ SN:PGA_scaffold59721__1_contigs__length_42511 LN:42511 skipping SAM header line: @SQ SN:PGA_scaffold59722__1_contigs__length_17118 LN:17118 skipping SAM header line: @SQ SN:PGA_scaffold59723__1_contigs__length_39806 LN:39806 skipping SAM header line: @SQ SN:PGA_scaffold59725__1_contigs__length_13136 LN:13136 skipping SAM header line: @SQ SN:PGA_scaffold59727__1_contigs__length_31211 LN:31211 skipping SAM header line: @SQ SN:PGA_scaffold59728__1_contigs__length_15687 LN:15687 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold59768__1_contigs__length_18591 LN:18591 skipping SAM header line: @SQ SN:PGA_scaffold59779__1_contigs__length_10275 LN:10275 skipping SAM header line: @SQ SN:PGA_scaffold59795__1_contigs__length_11362 LN:11362 skipping SAM header line: @SQ SN:PGA_scaffold59808__1_contigs__length_10120 LN:10120 skipping SAM header line: @SQ SN:PGA_scaffold59815__1_contigs__length_12398 LN:12398 skipping SAM header line: @SQ SN:PGA_scaffold59828__1_contigs__length_10555 LN:10555 skipping SAM header line: @SQ SN:PGA_scaffold59830__1_contigs__length_10417 LN:10417 skipping SAM header line: @SQ SN:PGA_scaffold59847__1_contigs__length_11576 LN:11576 skipping SAM header line: @SQ SN:PGA_scaffold59852__1_contigs__length_10144 LN:10144 skipping SAM header line: @SQ SN:PGA_scaffold59858__1_contigs__length_39712 LN:39712 skipping SAM header line: @SQ SN:PGA_scaffold59861__1_contigs__length_16978 LN:16978 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold59922__1_contigs__length_27297 LN:27297 skipping SAM header line: @SQ SN:PGA_scaffold59923__1_contigs__length_11967 LN:11967 skipping SAM header line: @SQ SN:PGA_scaffold59925__1_contigs__length_10341 LN:10341 skipping SAM header line: @SQ SN:PGA_scaffold59926__1_contigs__length_19800 LN:19800 skipping SAM header line: @SQ SN:PGA_scaffold59928__1_contigs__length_11066 LN:11066 skipping SAM header line: @SQ SN:PGA_scaffold59933__1_contigs__length_43116 LN:43116 skipping SAM header line: @SQ SN:PGA_scaffold59934__1_contigs__length_15445 LN:15445 skipping SAM header line: @SQ SN:PGA_scaffold59937__1_contigs__length_14063 LN:14063 skipping SAM header line: @SQ SN:PGA_scaffold59939__1_contigs__length_14879 LN:14879 skipping SAM header line: @SQ SN:PGA_scaffold59940__1_contigs__length_12474 LN:12474 skipping SAM header line: @SQ SN:PGA_scaffold59942__1_contigs__length_17865 LN:17865 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold60029__1_contigs__length_19878 LN:19878 skipping SAM header line: @SQ SN:PGA_scaffold60033__1_contigs__length_13029 LN:13029 skipping SAM header line: @SQ SN:PGA_scaffold60084__1_contigs__length_34630 LN:34630 skipping SAM header line: @SQ SN:PGA_scaffold60087__1_contigs__length_14181 LN:14181 skipping SAM header line: @SQ SN:PGA_scaffold60092__1_contigs__length_22393 LN:22393 skipping SAM header line: @SQ SN:PGA_scaffold60098__1_contigs__length_13404 LN:13404 skipping SAM header line: @SQ SN:PGA_scaffold60099__1_contigs__length_25791 LN:25791 skipping SAM header line: @SQ SN:PGA_scaffold60111__1_contigs__length_14960 LN:14960 skipping SAM header line: @SQ SN:PGA_scaffold60127__1_contigs__length_40895 LN:40895 skipping SAM header line: @SQ SN:PGA_scaffold60130__1_contigs__length_27067 LN:27067 skipping SAM header line: @SQ SN:PGA_scaffold60139__1_contigs__length_40879 LN:40879 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold60278__1_contigs__length_10293 LN:10293 skipping SAM header line: @SQ SN:PGA_scaffold60279__1_contigs__length_36536 LN:36536 skipping SAM header line: @SQ SN:PGA_scaffold60280__1_contigs__length_20166 LN:20166 skipping SAM header line: @SQ SN:PGA_scaffold60281__1_contigs__length_25250 LN:25250 skipping SAM header line: @SQ SN:PGA_scaffold60282__1_contigs__length_21674 LN:21674 skipping SAM header line: @SQ SN:PGA_scaffold60284__1_contigs__length_11022 LN:11022 skipping SAM header line: @SQ SN:PGA_scaffold60286__1_contigs__length_31103 LN:31103 skipping SAM header line: @SQ SN:PGA_scaffold60287__1_contigs__length_22025 LN:22025 skipping SAM header line: @SQ SN:PGA_scaffold60288__1_contigs__length_11075 LN:11075 skipping SAM header line: @SQ SN:PGA_scaffold60289__1_contigs__length_78725 LN:78725 skipping SAM header line: @SQ SN:PGA_scaffold60290__1_contigs__length_20939 LN:20939 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold60330__1_contigs__length_10186 LN:10186 skipping SAM header line: @SQ SN:PGA_scaffold60332__1_contigs__length_11645 LN:11645 skipping SAM header line: @SQ SN:PGA_scaffold60357__1_contigs__length_10917 LN:10917 skipping SAM header line: @SQ SN:PGA_scaffold60366__1_contigs__length_15188 LN:15188 skipping SAM header line: @SQ SN:PGA_scaffold60387__1_contigs__length_11220 LN:11220 skipping SAM header line: @SQ SN:PGA_scaffold60388__1_contigs__length_11546 LN:11546 skipping SAM header line: @SQ SN:PGA_scaffold60397__1_contigs__length_10835 LN:10835 skipping SAM header line: @SQ SN:PGA_scaffold60399__1_contigs__length_10219 LN:10219 skipping SAM header line: @SQ SN:PGA_scaffold60412__1_contigs__length_79597 LN:79597 skipping SAM header line: @SQ SN:PGA_scaffold60413__1_contigs__length_42267 LN:42267 skipping SAM header line: @SQ SN:PGA_scaffold60414__1_contigs__length_49107 LN:49107 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold60482__1_contigs__length_12004 LN:12004 skipping SAM header line: @SQ SN:PGA_scaffold60487__1_contigs__length_11782 LN:11782 skipping SAM header line: @SQ SN:PGA_scaffold60488__1_contigs__length_50761 LN:50761 skipping SAM header line: @SQ SN:PGA_scaffold60490__1_contigs__length_43435 LN:43435 skipping SAM header line: @SQ SN:PGA_scaffold60499__1_contigs__length_14903 LN:14903 skipping SAM header line: @SQ SN:PGA_scaffold60500__1_contigs__length_29028 LN:29028 skipping SAM header line: @SQ SN:PGA_scaffold60501__1_contigs__length_21701 LN:21701 skipping SAM header line: @SQ SN:PGA_scaffold60502__1_contigs__length_15846 LN:15846 skipping SAM header line: @SQ SN:PGA_scaffold60510__1_contigs__length_10669 LN:10669 skipping SAM header line: @SQ SN:PGA_scaffold60514__1_contigs__length_22837 LN:22837 skipping SAM header line: @SQ SN:PGA_scaffold60523__1_contigs__length_14755 LN:14755 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold60611__1_contigs__length_14081 LN:14081 skipping SAM header line: @SQ SN:PGA_scaffold60615__1_contigs__length_40286 LN:40286 skipping SAM header line: @SQ SN:PGA_scaffold60625__1_contigs__length_10226 LN:10226 skipping SAM header line: @SQ SN:PGA_scaffold60639__1_contigs__length_11194 LN:11194 skipping SAM header line: @SQ SN:PGA_scaffold60644__1_contigs__length_21631 LN:21631 skipping SAM header line: @SQ SN:PGA_scaffold60650__1_contigs__length_13161 LN:13161 skipping SAM header line: @SQ SN:PGA_scaffold60652__1_contigs__length_52273 LN:52273 skipping SAM header line: @SQ SN:PGA_scaffold60657__1_contigs__length_45209 LN:45209 skipping SAM header line: @SQ SN:PGA_scaffold60658__1_contigs__length_18897 LN:18897 skipping SAM header line: @SQ SN:PGA_scaffold60662__1_contigs__length_13117 LN:13117 skipping SAM header line: @SQ SN:PGA_scaffold60664__1_contigs__length_13882 LN:13882 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold60696__1_contigs__length_13166 LN:13166 skipping SAM header line: @SQ SN:PGA_scaffold60697__1_contigs__length_22156 LN:22156 skipping SAM header line: @SQ SN:PGA_scaffold60699__1_contigs__length_33841 LN:33841 skipping SAM header line: @SQ SN:PGA_scaffold60700__1_contigs__length_20940 LN:20940 skipping SAM header line: @SQ SN:PGA_scaffold60701__1_contigs__length_53170 LN:53170 skipping SAM header line: @SQ SN:PGA_scaffold60704__1_contigs__length_10281 LN:10281 skipping SAM header line: @SQ SN:PGA_scaffold60708__1_contigs__length_11724 LN:11724 skipping SAM header line: @SQ SN:PGA_scaffold60710__1_contigs__length_11791 LN:11791 skipping SAM header line: @SQ SN:PGA_scaffold60713__1_contigs__length_16076 LN:16076 skipping SAM header line: @SQ SN:PGA_scaffold60715__1_contigs__length_13367 LN:13367 skipping SAM header line: @SQ SN:PGA_scaffold60716__1_contigs__length_18702 LN:18702 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold61161__1_contigs__length_13046 LN:13046 skipping SAM header line: @SQ SN:PGA_scaffold61165__1_contigs__length_15573 LN:15573 skipping SAM header line: @SQ SN:PGA_scaffold61167__1_contigs__length_17637 LN:17637 skipping SAM header line: @SQ SN:PGA_scaffold61168__1_contigs__length_30806 LN:30806 skipping SAM header line: @SQ SN:PGA_scaffold61169__1_contigs__length_14018 LN:14018 skipping SAM header line: @SQ SN:PGA_scaffold61182__1_contigs__length_17176 LN:17176 skipping SAM header line: @SQ SN:PGA_scaffold61183__1_contigs__length_10820 LN:10820 skipping SAM header line: @SQ SN:PGA_scaffold61185__1_contigs__length_13451 LN:13451 skipping SAM header line: @SQ SN:PGA_scaffold61189__1_contigs__length_19522 LN:19522 skipping SAM header line: @SQ SN:PGA_scaffold61190__1_contigs__length_38143 LN:38143 skipping SAM header line: @SQ SN:PGA_scaffold61191__1_contigs__length_11655 LN:11655 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold61250__1_contigs__length_11090 LN:11090 skipping SAM header line: @SQ SN:PGA_scaffold61267__1_contigs__length_17957 LN:17957 skipping SAM header line: @SQ SN:PGA_scaffold61269__1_contigs__length_19626 LN:19626 skipping SAM header line: @SQ SN:PGA_scaffold61273__1_contigs__length_40703 LN:40703 skipping SAM header line: @SQ SN:PGA_scaffold61275__1_contigs__length_17094 LN:17094 skipping SAM header line: @SQ SN:PGA_scaffold61279__1_contigs__length_28743 LN:28743 skipping SAM header line: @SQ SN:PGA_scaffold61280__1_contigs__length_40374 LN:40374 skipping SAM header line: @SQ SN:PGA_scaffold61281__1_contigs__length_20154 LN:20154 skipping SAM header line: @SQ SN:PGA_scaffold61282__1_contigs__length_15270 LN:15270 skipping SAM header line: @SQ SN:PGA_scaffold61289__1_contigs__length_26688 LN:26688 skipping SAM header line: @SQ SN:PGA_scaffold61296__1_contigs__length_17437 LN:17437 skipping SAM header line: @SQ SN:PGA_scaffold61309__1_contigs__length_12421 LN:12421 skipping SAM header line: @SQ SN:PGA_scaffold61312__1_contigs__length_51905 LN:51905 skipping SAM header line: @SQ SN:PGA_scaffold61315__1_contigs__length_15166 LN:15166 skipping SAM header line: @SQ SN:PGA_scaffold61317__1_contigs__length_19069 LN:19069 skipping SAM header line: @SQ SN:PGA_scaffold61324__1_contigs__length_12523 LN:12523 skipping SAM header line: @SQ SN:PGA_scaffold61329__1_contigs__length_23052 LN:23052 skipping SAM header line: @SQ SN:PGA_scaffold61330__1_contigs__length_18243 LN:18243 skipping SAM header line: @SQ SN:PGA_scaffold61333__1_contigs__length_20588 LN:20588 skipping SAM header line: @SQ SN:PGA_scaffold61335__1_contigs__length_32633 LN:32633 skipping SAM header line: @SQ SN:PGA_scaffold61337__1_contigs__length_43505 LN:43505 skipping SAM header line: @SQ SN:PGA_scaffold61342__1_contigs__length_12092 LN:12092 skipping SAM header line: @SQ SN:PGA_scaffold61343__1_contigs__length_35738 LN:35738 skipping SAM header line: @SQ SN:PGA_scaffold61345__1_contigs__length_15593 LN:15593 skipping SAM header line: @SQ SN:PGA_scaffold61358__1_contigs__length_15995 LN:15995 skipping SAM header line: @SQ SN:PGA_scaffold61363__1_contigs__length_43856 LN:43856 skipping SAM header line: @SQ SN:PGA_scaffold61364__1_contigs__length_58674 LN:58674 skipping SAM header line: @SQ SN:PGA_scaffold61367__1_contigs__length_22235 LN:22235 skipping SAM header line: @SQ SN:PGA_scaffold61370__1_contigs__length_51160 LN:51160 skipping SAM header line: @SQ SN:PGA_scaffold61373__1_contigs__length_23000 LN:23000 skipping SAM header line: @SQ SN:PGA_scaffold61374__1_contigs__length_38921 LN:38921 skipping SAM header line: @SQ SN:PGA_scaffold61375__1_contigs__length_39623 LN:39623 skipping SAM header line: @SQ SN:PGA_scaffold61376__1_contigs__length_11488 LN:11488 skipping SAM header line: @SQ SN:PGA_scaffold61377__1_contigs__length_23116 LN:23116 skipping SAM header line: @SQ SN:PGA_scaffold61378__1_contigs__length_29498 LN:29498 skipping SAM header line: @SQ SN:PGA_scaffold61379__1_contigs__length_19704 LN:19704 skipping SAM header line: @SQ SN:PGA_scaffold61380__1_contigs__length_11113 LN:11113 skipping SAM header line: @SQ SN:PGA_scaffold61383__1_contigs__length_16065 LN:16065 skipping SAM header line: @SQ SN:PGA_scaffold61387__1_contigs__length_18292 LN:18292 skipping SAM header line: @SQ SN:PGA_scaffold61388__1_contigs__length_45689 LN:45689 skipping SAM header line: @SQ SN:PGA_scaffold61392__1_contigs__length_57213 LN:57213 skipping SAM header line: @SQ SN:PGA_scaffold61394__1_contigs__length_24788 LN:24788 skipping SAM header line: @SQ SN:PGA_scaffold61408__1_contigs__length_10162 LN:10162 skipping SAM header line: @SQ SN:PGA_scaffold61416__1_contigs__length_10006 LN:10006 skipping SAM header line: @SQ SN:PGA_scaffold61442__1_contigs__length_29117 LN:29117 skipping SAM header line: @SQ SN:PGA_scaffold61443__1_contigs__length_13904 LN:13904 skipping SAM header line: @SQ SN:PGA_scaffold61445__1_contigs__length_33748 LN:33748 skipping SAM header line: @SQ SN:PGA_scaffold61453__1_contigs__length_14984 LN:14984 skipping SAM header line: @SQ SN:PGA_scaffold61460__1_contigs__length_11091 LN:11091 skipping SAM header line: @SQ SN:PGA_scaffold61462__1_contigs__length_17479 LN:17479 skipping SAM header line: @SQ SN:PGA_scaffold61463__1_contigs__length_18215 LN:18215 skipping SAM header line: @SQ SN:PGA_scaffold61468__1_contigs__length_13710 LN:13710 skipping SAM header line: @SQ SN:PGA_scaffold61469__1_contigs__length_12002 LN:12002 skipping SAM header line: @SQ SN:PGA_scaffold61470__1_contigs__length_20557 LN:20557 skipping SAM header line: @SQ SN:PGA_scaffold61479__1_contigs__length_22241 LN:22241 skipping SAM header line: @SQ SN:PGA_scaffold61482__1_contigs__length_14493 LN:14493 skipping SAM header line: @SQ SN:PGA_scaffold61484__1_contigs__length_20973 LN:20973 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold61547__1_contigs__length_13960 LN:13960 skipping SAM header line: @SQ SN:PGA_scaffold61555__1_contigs__length_16857 LN:16857 skipping SAM header line: @SQ SN:PGA_scaffold61559__1_contigs__length_13176 LN:13176 skipping SAM header line: @SQ SN:PGA_scaffold61563__1_contigs__length_12364 LN:12364 skipping SAM header line: @SQ SN:PGA_scaffold61565__1_contigs__length_12663 LN:12663 skipping SAM header line: @SQ SN:PGA_scaffold61570__1_contigs__length_14855 LN:14855 skipping SAM header line: @SQ SN:PGA_scaffold61571__1_contigs__length_10532 LN:10532 skipping SAM header line: @SQ SN:PGA_scaffold61575__1_contigs__length_25360 LN:25360 skipping SAM header line: @SQ SN:PGA_scaffold61576__1_contigs__length_18005 LN:18005 skipping SAM header line: @SQ SN:PGA_scaffold61579__1_contigs__length_12156 LN:12156 skipping SAM header line: @SQ SN:PGA_scaffold61580__1_contigs__length_23006 LN:23006 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold61613__1_contigs__length_25314 LN:25314 skipping SAM header line: @SQ SN:PGA_scaffold61614__1_contigs__length_28466 LN:28466 skipping SAM header line: @SQ SN:PGA_scaffold61615__1_contigs__length_40934 LN:40934 skipping SAM header line: @SQ SN:PGA_scaffold61616__1_contigs__length_20028 LN:20028 skipping SAM header line: @SQ SN:PGA_scaffold61618__1_contigs__length_16679 LN:16679 skipping SAM header line: @SQ SN:PGA_scaffold61619__1_contigs__length_33825 LN:33825 skipping SAM header line: @SQ SN:PGA_scaffold61622__1_contigs__length_15161 LN:15161 skipping SAM header line: @SQ SN:PGA_scaffold61624__1_contigs__length_14440 LN:14440 skipping SAM header line: @SQ SN:PGA_scaffold61628__1_contigs__length_48494 LN:48494 skipping SAM header line: @SQ SN:PGA_scaffold61631__1_contigs__length_29546 LN:29546 skipping SAM header line: @SQ SN:PGA_scaffold61636__1_contigs__length_47931 LN:47931 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold61887__1_contigs__length_10778 LN:10778 skipping SAM header line: @SQ SN:PGA_scaffold61888__1_contigs__length_43188 LN:43188 skipping SAM header line: @SQ SN:PGA_scaffold61891__1_contigs__length_16402 LN:16402 skipping SAM header line: @SQ SN:PGA_scaffold61893__1_contigs__length_16586 LN:16586 skipping SAM header line: @SQ SN:PGA_scaffold61895__1_contigs__length_10754 LN:10754 skipping SAM header line: @SQ SN:PGA_scaffold61897__1_contigs__length_41371 LN:41371 skipping SAM header line: @SQ SN:PGA_scaffold61910__1_contigs__length_13612 LN:13612 skipping SAM header line: @SQ SN:PGA_scaffold61912__1_contigs__length_10441 LN:10441 skipping SAM header line: @SQ SN:PGA_scaffold61940__1_contigs__length_11618 LN:11618 skipping SAM header line: @SQ SN:PGA_scaffold61948__1_contigs__length_10378 LN:10378 skipping SAM header line: @SQ SN:PGA_scaffold61952__1_contigs__length_11736 LN:11736 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold61991__1_contigs__length_11512 LN:11512 skipping SAM header line: @SQ SN:PGA_scaffold62005__1_contigs__length_14278 LN:14278 skipping SAM header line: @SQ SN:PGA_scaffold62007__1_contigs__length_16772 LN:16772 skipping SAM header line: @SQ SN:PGA_scaffold62009__1_contigs__length_17596 LN:17596 skipping SAM header line: @SQ SN:PGA_scaffold62015__1_contigs__length_17484 LN:17484 skipping SAM header line: @SQ SN:PGA_scaffold62018__1_contigs__length_25486 LN:25486 skipping SAM header line: @SQ SN:PGA_scaffold62019__1_contigs__length_17743 LN:17743 skipping SAM header line: @SQ SN:PGA_scaffold62023__1_contigs__length_11511 LN:11511 skipping SAM header line: @SQ SN:PGA_scaffold62026__1_contigs__length_12024 LN:12024 skipping SAM header line: @SQ SN:PGA_scaffold62037__1_contigs__length_10082 LN:10082 skipping SAM header line: @SQ SN:PGA_scaffold62038__1_contigs__length_17804 LN:17804 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold62086__1_contigs__length_10595 LN:10595 skipping SAM header line: @SQ SN:PGA_scaffold62098__1_contigs__length_77920 LN:77920 skipping SAM header line: @SQ SN:PGA_scaffold62107__1_contigs__length_13183 LN:13183 skipping SAM header line: @SQ SN:PGA_scaffold62115__1_contigs__length_12248 LN:12248 skipping SAM header line: @SQ SN:PGA_scaffold62119__1_contigs__length_12866 LN:12866 skipping SAM header line: @SQ SN:PGA_scaffold62120__1_contigs__length_12085 LN:12085 skipping SAM header line: @SQ SN:PGA_scaffold62122__1_contigs__length_11982 LN:11982 skipping SAM header line: @SQ SN:PGA_scaffold62124__1_contigs__length_25158 LN:25158 skipping SAM header line: @SQ SN:PGA_scaffold62129__1_contigs__length_20041 LN:20041 skipping SAM header line: @SQ SN:PGA_scaffold62133__1_contigs__length_11474 LN:11474 skipping SAM header line: @SQ SN:PGA_scaffold62138__1_contigs__length_33334 LN:33334 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold62181__1_contigs__length_10952 LN:10952 skipping SAM header line: @SQ SN:PGA_scaffold62182__1_contigs__length_17897 LN:17897 skipping SAM header line: @SQ SN:PGA_scaffold62186__1_contigs__length_43446 LN:43446 skipping SAM header line: @SQ SN:PGA_scaffold62192__1_contigs__length_56278 LN:56278 skipping SAM header line: @SQ SN:PGA_scaffold62193__1_contigs__length_13322 LN:13322 skipping SAM header line: @SQ SN:PGA_scaffold62198__1_contigs__length_38255 LN:38255 skipping SAM header line: @SQ SN:PGA_scaffold62199__1_contigs__length_16072 LN:16072 skipping SAM header line: @SQ SN:PGA_scaffold62201__1_contigs__length_24165 LN:24165 skipping SAM header line: @SQ SN:PGA_scaffold62202__1_contigs__length_17495 LN:17495 skipping SAM header line: @SQ SN:PGA_scaffold62203__1_contigs__length_12473 LN:12473 skipping SAM header line: @SQ SN:PGA_scaffold62206__1_contigs__length_67303 LN:67303 skipping SAM header line: @SQ SN:PGA_scaffold62209__1_contigs__length_14442 LN:14442 skipping SAM header line: @SQ SN:PGA_scaffold62218__1_contigs__length_28799 LN:28799 skipping SAM header line: @SQ SN:PGA_scaffold62223__1_contigs__length_10898 LN:10898 skipping SAM header line: @SQ SN:PGA_scaffold62224__1_contigs__length_74638 LN:74638 skipping SAM header line: @SQ SN:PGA_scaffold62225__1_contigs__length_13156 LN:13156 skipping SAM header line: @SQ SN:PGA_scaffold62226__1_contigs__length_86027 LN:86027 skipping SAM header line: @SQ SN:PGA_scaffold62238__1_contigs__length_10938 LN:10938 skipping SAM header line: @SQ SN:PGA_scaffold62259__1_contigs__length_10611 LN:10611 skipping SAM header line: @SQ SN:PGA_scaffold62261__1_contigs__length_11645 LN:11645 skipping SAM header line: @SQ SN:PGA_scaffold62267__1_contigs__length_12194 LN:12194 skipping SAM header line: @SQ SN:PGA_scaffold62269__1_contigs__length_10133 LN:10133 skipping SAM header line: @SQ SN:PGA_scaffold62273__1_contigs__length_11811 LN:11811 skipping SAM header line: @SQ SN:PGA_scaffold62275__1_contigs__length_13611 LN:13611 skipping SAM header line: @SQ SN:PGA_scaffold62285__1_contigs__length_28484 LN:28484 skipping SAM header line: @SQ SN:PGA_scaffold62292__1_contigs__length_27758 LN:27758 skipping SAM header line: @SQ SN:PGA_scaffold62296__1_contigs__length_27651 LN:27651 skipping SAM header line: @SQ SN:PGA_scaffold62308__1_contigs__length_14290 LN:14290 skipping SAM header line: @SQ SN:PGA_scaffold62312__1_contigs__length_14437 LN:14437 skipping SAM header line: @SQ SN:PGA_scaffold62313__1_contigs__length_20565 LN:20565 skipping SAM header line: @SQ SN:PGA_scaffold62316__1_contigs__length_12181 LN:12181 skipping SAM header line: @SQ SN:PGA_scaffold62317__1_contigs__length_29696 LN:29696 skipping SAM header line: @SQ SN:PGA_scaffold62318__1_contigs__length_13271 LN:13271 skipping SAM header line: @SQ SN:PGA_scaffold62319__1_contigs__length_36955 LN:36955 skipping SAM header line: @SQ SN:PGA_scaffold62320__1_contigs__length_16384 LN:16384 skipping SAM header line: @SQ SN:PGA_scaffold62323__1_contigs__length_25219 LN:25219 skipping SAM header line: @SQ SN:PGA_scaffold62327__1_contigs__length_11675 LN:11675 skipping SAM header line: @SQ SN:PGA_scaffold62331__1_contigs__length_15374 LN:15374 skipping SAM header line: @SQ SN:PGA_scaffold62337__1_contigs__length_12631 LN:12631 skipping SAM header line: @SQ SN:PGA_scaffold62349__1_contigs__length_25454 LN:25454 skipping SAM header line: @SQ SN:PGA_scaffold62356__1_contigs__length_14054 LN:14054 skipping SAM header line: @SQ SN:PGA_scaffold62362__1_contigs__length_11214 LN:11214 skipping SAM header line: @SQ SN:PGA_scaffold62364__1_contigs__length_54322 LN:54322 skipping SAM header line: @SQ SN:PGA_scaffold62377__1_contigs__length_13622 LN:13622 skipping SAM header line: @SQ SN:PGA_scaffold62383__1_contigs__length_24112 LN:24112 skipping SAM header line: @SQ SN:PGA_scaffold62390__1_contigs__length_14683 LN:14683 skipping SAM header line: @SQ SN:PGA_scaffold62398__1_contigs__length_10012 LN:10012 skipping SAM header line: @SQ SN:PGA_scaffold62403__1_contigs__length_38564 LN:38564 skipping SAM header line: @SQ SN:PGA_scaffold62411__1_contigs__length_16050 LN:16050 skipping SAM header line: @SQ SN:PGA_scaffold62412__1_contigs__length_12229 LN:12229 skipping SAM header line: @SQ SN:PGA_scaffold62425__1_contigs__length_17447 LN:17447 skipping SAM header line: @SQ SN:PGA_scaffold62427__1_contigs__length_13336 LN:13336 skipping SAM header line: @SQ SN:PGA_scaffold62430__1_contigs__length_23776 LN:23776 skipping SAM header line: @SQ SN:PGA_scaffold62433__1_contigs__length_15615 LN:15615 skipping SAM header line: @SQ SN:PGA_scaffold62435__1_contigs__length_59037 LN:59037 skipping SAM header line: @SQ SN:PGA_scaffold62439__1_contigs__length_16308 LN:16308 skipping SAM header line: @SQ SN:PGA_scaffold62443__1_contigs__length_39499 LN:39499 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold62477__1_contigs__length_40507 LN:40507 skipping SAM header line: @SQ SN:PGA_scaffold62478__1_contigs__length_48273 LN:48273 skipping SAM header line: @SQ SN:PGA_scaffold62479__1_contigs__length_16579 LN:16579 skipping SAM header line: @SQ SN:PGA_scaffold62481__1_contigs__length_15780 LN:15780 skipping SAM header line: @SQ SN:PGA_scaffold62484__1_contigs__length_12269 LN:12269 skipping SAM header line: @SQ SN:PGA_scaffold62492__1_contigs__length_31702 LN:31702 skipping SAM header line: @SQ SN:PGA_scaffold62494__1_contigs__length_12686 LN:12686 skipping SAM header line: @SQ SN:PGA_scaffold62495__1_contigs__length_13794 LN:13794 skipping SAM header line: @SQ SN:PGA_scaffold62496__1_contigs__length_26235 LN:26235 skipping SAM header line: @SQ SN:PGA_scaffold62513__1_contigs__length_10278 LN:10278 skipping SAM header line: @SQ SN:PGA_scaffold62537__1_contigs__length_39343 LN:39343 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold62587__1_contigs__length_10080 LN:10080 skipping SAM header line: @SQ SN:PGA_scaffold62591__1_contigs__length_64464 LN:64464 skipping SAM header line: @SQ SN:PGA_scaffold62598__1_contigs__length_25430 LN:25430 skipping SAM header line: @SQ SN:PGA_scaffold62601__1_contigs__length_36053 LN:36053 skipping SAM header line: @SQ SN:PGA_scaffold62602__1_contigs__length_30153 LN:30153 skipping SAM header line: @SQ SN:PGA_scaffold62614__1_contigs__length_18188 LN:18188 skipping SAM header line: @SQ SN:PGA_scaffold62620__1_contigs__length_14658 LN:14658 skipping SAM header line: @SQ SN:PGA_scaffold62640__1_contigs__length_12885 LN:12885 skipping SAM header line: @SQ SN:PGA_scaffold62642__1_contigs__length_12358 LN:12358 skipping SAM header line: @SQ SN:PGA_scaffold62644__1_contigs__length_11635 LN:11635 skipping SAM header line: @SQ SN:PGA_scaffold62649__1_contigs__length_17417 LN:17417 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold62678__1_contigs__length_13219 LN:13219 skipping SAM header line: @SQ SN:PGA_scaffold62680__1_contigs__length_13078 LN:13078 skipping SAM header line: @SQ SN:PGA_scaffold62683__1_contigs__length_16710 LN:16710 skipping SAM header line: @SQ SN:PGA_scaffold62687__1_contigs__length_56019 LN:56019 skipping SAM header line: @SQ SN:PGA_scaffold62693__1_contigs__length_10288 LN:10288 skipping SAM header line: @SQ SN:PGA_scaffold62696__1_contigs__length_11867 LN:11867 skipping SAM header line: @SQ SN:PGA_scaffold62700__1_contigs__length_10012 LN:10012 skipping SAM header line: @SQ SN:PGA_scaffold62701__1_contigs__length_10964 LN:10964 skipping SAM header line: @SQ SN:PGA_scaffold62709__1_contigs__length_12094 LN:12094 skipping SAM header line: @SQ SN:PGA_scaffold62727__1_contigs__length_10956 LN:10956 skipping SAM header line: @SQ SN:PGA_scaffold62738__1_contigs__length_12456 LN:12456 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold62898__1_contigs__length_44677 LN:44677 skipping SAM header line: @SQ SN:PGA_scaffold62899__1_contigs__length_48738 LN:48738 skipping SAM header line: @SQ SN:PGA_scaffold62904__1_contigs__length_26307 LN:26307 skipping SAM header line: @SQ SN:PGA_scaffold62907__1_contigs__length_31183 LN:31183 skipping SAM header line: @SQ SN:PGA_scaffold62908__1_contigs__length_19901 LN:19901 skipping SAM header line: @SQ SN:PGA_scaffold62909__1_contigs__length_11638 LN:11638 skipping SAM header line: @SQ SN:PGA_scaffold62910__1_contigs__length_11627 LN:11627 skipping SAM header line: @SQ SN:PGA_scaffold62912__1_contigs__length_44717 LN:44717 skipping SAM header line: @SQ SN:PGA_scaffold62914__1_contigs__length_47643 LN:47643 skipping SAM header line: @SQ SN:PGA_scaffold62917__1_contigs__length_34646 LN:34646 skipping SAM header line: @SQ SN:PGA_scaffold62920__1_contigs__length_32719 LN:32719 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold63018__1_contigs__length_15427 LN:15427 skipping SAM header line: @SQ SN:PGA_scaffold63022__1_contigs__length_31832 LN:31832 skipping SAM header line: @SQ SN:PGA_scaffold63029__1_contigs__length_17686 LN:17686 skipping SAM header line: @SQ SN:PGA_scaffold63033__1_contigs__length_64137 LN:64137 skipping SAM header line: @SQ SN:PGA_scaffold63034__1_contigs__length_13321 LN:13321 skipping SAM header line: @SQ SN:PGA_scaffold63040__1_contigs__length_10823 LN:10823 skipping SAM header line: @SQ SN:PGA_scaffold63041__1_contigs__length_23019 LN:23019 skipping SAM header line: @SQ SN:PGA_scaffold63044__1_contigs__length_14025 LN:14025 skipping SAM header line: @SQ SN:PGA_scaffold63048__1_contigs__length_18020 LN:18020 skipping SAM header line: @SQ SN:PGA_scaffold63057__1_contigs__length_30046 LN:30046 skipping SAM header line: @SQ SN:PGA_scaffold63059__1_contigs__length_30993 LN:30993 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold63107__1_contigs__length_18816 LN:18816 skipping SAM header line: @SQ SN:PGA_scaffold63109__1_contigs__length_21191 LN:21191 skipping SAM header line: @SQ SN:PGA_scaffold63114__1_contigs__length_20136 LN:20136 skipping SAM header line: @SQ SN:PGA_scaffold63115__1_contigs__length_32288 LN:32288 skipping SAM header line: @SQ SN:PGA_scaffold63137__1_contigs__length_10152 LN:10152 skipping SAM header line: @SQ SN:PGA_scaffold63140__1_contigs__length_32392 LN:32392 skipping SAM header line: @SQ SN:PGA_scaffold63142__1_contigs__length_17883 LN:17883 skipping SAM header line: @SQ SN:PGA_scaffold63143__1_contigs__length_15043 LN:15043 skipping SAM header line: @SQ SN:PGA_scaffold63144__1_contigs__length_70359 LN:70359 skipping SAM header line: @SQ SN:PGA_scaffold63146__1_contigs__length_10760 LN:10760 skipping SAM header line: @SQ SN:PGA_scaffold63148__1_contigs__length_14813 LN:14813 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold63188__1_contigs__length_14745 LN:14745 skipping SAM header line: @SQ SN:PGA_scaffold63189__1_contigs__length_15614 LN:15614 skipping SAM header line: @SQ SN:PGA_scaffold63192__1_contigs__length_21979 LN:21979 skipping SAM header line: @SQ SN:PGA_scaffold63196__1_contigs__length_54760 LN:54760 skipping SAM header line: @SQ SN:PGA_scaffold63198__1_contigs__length_39852 LN:39852 skipping SAM header line: @SQ SN:PGA_scaffold63203__1_contigs__length_12666 LN:12666 skipping SAM header line: @SQ SN:PGA_scaffold63205__1_contigs__length_25702 LN:25702 skipping SAM header line: @SQ SN:PGA_scaffold63211__1_contigs__length_28424 LN:28424 skipping SAM header line: @SQ SN:PGA_scaffold63225__1_contigs__length_13473 LN:13473 skipping SAM header line: @SQ SN:PGA_scaffold63231__1_contigs__length_26487 LN:26487 skipping SAM header line: @SQ SN:PGA_scaffold63237__1_contigs__length_11175 LN:11175 skipping SAM header line: @SQ SN:PGA_scaffold63238__1_contigs__length_18831 LN:18831 skipping SAM header line: @SQ SN:PGA_scaffold63247__1_contigs__length_15315 LN:15315 skipping SAM header line: @SQ SN:PGA_scaffold63250__1_contigs__length_15622 LN:15622 skipping SAM header line: @SQ SN:PGA_scaffold63251__1_contigs__length_76351 LN:76351 skipping SAM header line: @SQ SN:PGA_scaffold63253__1_contigs__length_22427 LN:22427 skipping SAM header line: @SQ SN:PGA_scaffold63256__1_contigs__length_11844 LN:11844 skipping SAM header line: @SQ SN:PGA_scaffold63262__1_contigs__length_24805 LN:24805 skipping SAM header line: @SQ SN:PGA_scaffold63265__1_contigs__length_16164 LN:16164 skipping SAM header line: @SQ SN:PGA_scaffold63266__1_contigs__length_21763 LN:21763 skipping SAM header line: @SQ SN:PGA_scaffold63269__1_contigs__length_21881 LN:21881 skipping SAM header line: @SQ SN:PGA_scaffold63270__1_contigs__length_11826 LN:11826 skipping SAM header line: @SQ SN:PGA_scaffold63277__1_contigs__length_43210 LN:43210 skipping SAM header line: @SQ SN:PGA_scaffold63278__1_contigs__length_17408 LN:17408 skipping SAM header line: @SQ SN:PGA_scaffold63280__1_contigs__length_78184 LN:78184 skipping SAM header line: @SQ SN:PGA_scaffold63281__1_contigs__length_29909 LN:29909 skipping SAM header line: @SQ SN:PGA_scaffold63282__1_contigs__length_48451 LN:48451 skipping SAM header line: @SQ SN:PGA_scaffold63284__1_contigs__length_25006 LN:25006 skipping SAM header line: @SQ SN:PGA_scaffold63286__1_contigs__length_64799 LN:64799 skipping SAM header line: @SQ SN:PGA_scaffold63295__1_contigs__length_73242 LN:73242 skipping SAM header line: @SQ SN:PGA_scaffold63296__1_contigs__length_18644 LN:18644 skipping SAM header line: @SQ SN:PGA_scaffold63302__1_contigs__length_10023 LN:10023 skipping SAM header line: @SQ SN:PGA_scaffold63326__1_contigs__length_28716 LN:28716 skipping SAM header line: @SQ SN:PGA_scaffold63327__1_contigs__length_41823 LN:41823 skipping SAM header line: @SQ SN:PGA_scaffold63328__1_contigs__length_11237 LN:11237 skipping SAM header line: @SQ SN:PGA_scaffold63330__1_contigs__length_32542 LN:32542 skipping SAM header line: @SQ SN:PGA_scaffold63338__1_contigs__length_30825 LN:30825 skipping SAM header line: @SQ SN:PGA_scaffold63344__1_contigs__length_10996 LN:10996 skipping SAM header line: @SQ SN:PGA_scaffold63348__1_contigs__length_13171 LN:13171 skipping SAM header line: @SQ SN:PGA_scaffold63350__1_contigs__length_10546 LN:10546 skipping SAM header line: @SQ SN:PGA_scaffold63351__1_contigs__length_15913 LN:15913 skipping SAM header line: @SQ SN:PGA_scaffold63355__1_contigs__length_11398 LN:11398 skipping SAM header line: @SQ SN:PGA_scaffold63356__1_contigs__length_10600 LN:10600 skipping SAM header line: @SQ SN:PGA_scaffold63363__1_contigs__length_18043 LN:18043 skipping SAM header line: @SQ SN:PGA_scaffold63366__1_contigs__length_11103 LN:11103 skipping SAM header line: @SQ SN:PGA_scaffold63380__1_contigs__length_15093 LN:15093 skipping SAM header line: @SQ SN:PGA_scaffold63383__1_contigs__length_12933 LN:12933 skipping SAM header line: @SQ SN:PGA_scaffold63385__1_contigs__length_10239 LN:10239 skipping SAM header line: @SQ SN:PGA_scaffold63388__1_contigs__length_17035 LN:17035 skipping SAM header line: @SQ SN:PGA_scaffold63390__1_contigs__length_14943 LN:14943 skipping SAM header line: @SQ SN:PGA_scaffold63391__1_contigs__length_21206 LN:21206 skipping SAM header line: @SQ SN:PGA_scaffold63392__1_contigs__length_26002 LN:26002 skipping SAM header line: @SQ SN:PGA_scaffold63394__1_contigs__length_12945 LN:12945 skipping SAM header line: @SQ SN:PGA_scaffold63397__1_contigs__length_21649 LN:21649 skipping SAM header line: @SQ SN:PGA_scaffold63398__1_contigs__length_14679 LN:14679 skipping SAM header line: @SQ SN:PGA_scaffold63400__1_contigs__length_13106 LN:13106 skipping SAM header line: @SQ SN:PGA_scaffold63401__1_contigs__length_11404 LN:11404 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold63486__1_contigs__length_20940 LN:20940 skipping SAM header line: @SQ SN:PGA_scaffold63487__1_contigs__length_13329 LN:13329 skipping SAM header line: @SQ SN:PGA_scaffold63489__1_contigs__length_12757 LN:12757 skipping SAM header line: @SQ SN:PGA_scaffold63490__1_contigs__length_28977 LN:28977 skipping SAM header line: @SQ SN:PGA_scaffold63494__1_contigs__length_14626 LN:14626 skipping SAM header line: @SQ SN:PGA_scaffold63495__1_contigs__length_14013 LN:14013 skipping SAM header line: @SQ SN:PGA_scaffold63498__1_contigs__length_21482 LN:21482 skipping SAM header line: @SQ SN:PGA_scaffold63501__1_contigs__length_21890 LN:21890 skipping SAM header line: @SQ SN:PGA_scaffold63504__1_contigs__length_83511 LN:83511 skipping SAM header line: @SQ SN:PGA_scaffold63514__1_contigs__length_13311 LN:13311 skipping SAM header line: @SQ SN:PGA_scaffold63517__1_contigs__length_18058 LN:18058 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold63594__1_contigs__length_42878 LN:42878 skipping SAM header line: @SQ SN:PGA_scaffold63598__1_contigs__length_11096 LN:11096 skipping SAM header line: @SQ SN:PGA_scaffold63600__1_contigs__length_13421 LN:13421 skipping SAM header line: @SQ SN:PGA_scaffold63601__1_contigs__length_11255 LN:11255 skipping SAM header line: @SQ SN:PGA_scaffold63609__1_contigs__length_14731 LN:14731 skipping SAM header line: @SQ SN:PGA_scaffold63611__1_contigs__length_16045 LN:16045 skipping SAM header line: @SQ SN:PGA_scaffold63623__1_contigs__length_19601 LN:19601 skipping SAM header line: @SQ SN:PGA_scaffold63625__1_contigs__length_10209 LN:10209 skipping SAM header line: @SQ SN:PGA_scaffold63628__1_contigs__length_14834 LN:14834 skipping SAM header line: @SQ SN:PGA_scaffold63630__1_contigs__length_11131 LN:11131 skipping SAM header line: @SQ SN:PGA_scaffold63635__1_contigs__length_31389 LN:31389 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold63716__1_contigs__length_19021 LN:19021 skipping SAM header line: @SQ SN:PGA_scaffold63719__1_contigs__length_11473 LN:11473 skipping SAM header line: @SQ SN:PGA_scaffold63729__1_contigs__length_32731 LN:32731 skipping SAM header line: @SQ SN:PGA_scaffold63731__1_contigs__length_19147 LN:19147 skipping SAM header line: @SQ SN:PGA_scaffold63732__1_contigs__length_50829 LN:50829 skipping SAM header line: @SQ SN:PGA_scaffold63734__1_contigs__length_31184 LN:31184 skipping SAM header line: @SQ SN:PGA_scaffold63737__1_contigs__length_21766 LN:21766 skipping SAM header line: @SQ SN:PGA_scaffold63741__1_contigs__length_36520 LN:36520 skipping SAM header line: @SQ SN:PGA_scaffold63747__1_contigs__length_28781 LN:28781 skipping SAM header line: @SQ SN:PGA_scaffold63748__1_contigs__length_33842 LN:33842 skipping SAM header line: @SQ SN:PGA_scaffold63749__1_contigs__length_42782 LN:42782 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold63874__1_contigs__length_36908 LN:36908 skipping SAM header line: @SQ SN:PGA_scaffold63875__1_contigs__length_15232 LN:15232 skipping SAM header line: @SQ SN:PGA_scaffold63879__1_contigs__length_13306 LN:13306 skipping SAM header line: @SQ SN:PGA_scaffold63880__1_contigs__length_18632 LN:18632 skipping SAM header line: @SQ SN:PGA_scaffold63883__1_contigs__length_68258 LN:68258 skipping SAM header line: @SQ SN:PGA_scaffold63886__1_contigs__length_33964 LN:33964 skipping SAM header line: @SQ SN:PGA_scaffold63888__1_contigs__length_20253 LN:20253 skipping SAM header line: @SQ SN:PGA_scaffold63889__1_contigs__length_15597 LN:15597 skipping SAM header line: @SQ SN:PGA_scaffold63890__1_contigs__length_10214 LN:10214 skipping SAM header line: @SQ SN:PGA_scaffold63891__1_contigs__length_19378 LN:19378 skipping SAM header line: @SQ SN:PGA_scaffold63899__1_contigs__length_23502 LN:23502 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64039__1_contigs__length_17284 LN:17284 skipping SAM header line: @SQ SN:PGA_scaffold64044__1_contigs__length_17462 LN:17462 skipping SAM header line: @SQ SN:PGA_scaffold64047__1_contigs__length_15465 LN:15465 skipping SAM header line: @SQ SN:PGA_scaffold64049__1_contigs__length_45875 LN:45875 skipping SAM header line: @SQ SN:PGA_scaffold64054__1_contigs__length_70679 LN:70679 skipping SAM header line: @SQ SN:PGA_scaffold64055__1_contigs__length_26318 LN:26318 skipping SAM header line: @SQ SN:PGA_scaffold64058__1_contigs__length_19061 LN:19061 skipping SAM header line: @SQ SN:PGA_scaffold64060__1_contigs__length_13740 LN:13740 skipping SAM header line: @SQ SN:PGA_scaffold64063__1_contigs__length_16740 LN:16740 skipping SAM header line: @SQ SN:PGA_scaffold64068__1_contigs__length_26568 LN:26568 skipping SAM header line: @SQ SN:PGA_scaffold64069__1_contigs__length_14429 LN:14429 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64136__1_contigs__length_15830 LN:15830 skipping SAM header line: @SQ SN:PGA_scaffold64139__1_contigs__length_10301 LN:10301 skipping SAM header line: @SQ SN:PGA_scaffold64140__1_contigs__length_27409 LN:27409 skipping SAM header line: @SQ SN:PGA_scaffold64144__1_contigs__length_53004 LN:53004 skipping SAM header line: @SQ SN:PGA_scaffold64150__1_contigs__length_10331 LN:10331 skipping SAM header line: @SQ SN:PGA_scaffold64151__1_contigs__length_17962 LN:17962 skipping SAM header line: @SQ SN:PGA_scaffold64157__1_contigs__length_31528 LN:31528 skipping SAM header line: @SQ SN:PGA_scaffold64179__1_contigs__length_31562 LN:31562 skipping SAM header line: @SQ SN:PGA_scaffold64184__1_contigs__length_11748 LN:11748 skipping SAM header line: @SQ SN:PGA_scaffold64185__1_contigs__length_13680 LN:13680 skipping SAM header line: @SQ SN:PGA_scaffold64189__1_contigs__length_11771 LN:11771 skipping SAM header line: @SQ SN:PGA_scaffold64194__1_contigs__length_13400 LN:13400 skipping SAM header line: @SQ SN:PGA_scaffold64197__1_contigs__length_34579 LN:34579 skipping SAM header line: @SQ SN:PGA_scaffold64201__1_contigs__length_25836 LN:25836 skipping SAM header line: @SQ SN:PGA_scaffold64208__1_contigs__length_45484 LN:45484 skipping SAM header line: @SQ SN:PGA_scaffold64210__1_contigs__length_17497 LN:17497 skipping SAM header line: @SQ SN:PGA_scaffold64224__1_contigs__length_23362 LN:23362 skipping SAM header line: @SQ SN:PGA_scaffold64236__1_contigs__length_11047 LN:11047 skipping SAM header line: @SQ SN:PGA_scaffold64257__1_contigs__length_16315 LN:16315 skipping SAM header line: @SQ SN:PGA_scaffold64259__1_contigs__length_11693 LN:11693 skipping SAM header line: @SQ SN:PGA_scaffold64260__1_contigs__length_22408 LN:22408 skipping SAM header line: @SQ SN:PGA_scaffold64262__1_contigs__length_13612 LN:13612 skipping SAM header line: @SQ SN:PGA_scaffold64265__1_contigs__length_11300 LN:11300 skipping SAM header line: @SQ SN:PGA_scaffold64271__1_contigs__length_15788 LN:15788 skipping SAM header line: @SQ SN:PGA_scaffold64277__1_contigs__length_37318 LN:37318 skipping SAM header line: @SQ SN:PGA_scaffold64282__1_contigs__length_14608 LN:14608 skipping SAM header line: @SQ SN:PGA_scaffold64283__1_contigs__length_12404 LN:12404 skipping SAM header line: @SQ SN:PGA_scaffold64290__1_contigs__length_16617 LN:16617 skipping SAM header line: @SQ SN:PGA_scaffold64294__1_contigs__length_20911 LN:20911 skipping SAM header line: @SQ SN:PGA_scaffold64298__1_contigs__length_13855 LN:13855 skipping SAM header line: @SQ SN:PGA_scaffold64301__1_contigs__length_20715 LN:20715 skipping SAM header line: @SQ SN:PGA_scaffold64303__1_contigs__length_12317 LN:12317 skipping SAM header line: @SQ SN:PGA_scaffold64304__1_contigs__length_14968 LN:14968 skipping SAM header line: @SQ SN:PGA_scaffold64309__1_contigs__length_14180 LN:14180 skipping SAM header line: @SQ SN:PGA_scaffold64318__1_contigs__length_16294 LN:16294 skipping SAM header line: @SQ SN:PGA_scaffold64322__1_contigs__length_15130 LN:15130 skipping SAM header line: @SQ SN:PGA_scaffold64323__1_contigs__length_10033 LN:10033 skipping SAM header line: @SQ SN:PGA_scaffold64324__1_contigs__length_20632 LN:20632 skipping SAM header line: @SQ SN:PGA_scaffold64328__1_contigs__length_21269 LN:21269 skipping SAM header line: @SQ SN:PGA_scaffold64329__1_contigs__length_12718 LN:12718 skipping SAM header line: @SQ SN:PGA_scaffold64331__1_contigs__length_15816 LN:15816 skipping SAM header line: @SQ SN:PGA_scaffold64336__1_contigs__length_10406 LN:10406 skipping SAM header line: @SQ SN:PGA_scaffold64338__1_contigs__length_27423 LN:27423 skipping SAM header line: @SQ SN:PGA_scaffold64339__1_contigs__length_32767 LN:32767 skipping SAM header line: @SQ SN:PGA_scaffold64342__1_contigs__length_26292 LN:26292 skipping SAM header line: @SQ SN:PGA_scaffold64343__1_contigs__length_16215 LN:16215 skipping SAM header line: @SQ SN:PGA_scaffold64344__1_contigs__length_22442 LN:22442 skipping SAM header line: @SQ SN:PGA_scaffold64345__1_contigs__length_20440 LN:20440 skipping SAM header line: @SQ SN:PGA_scaffold64346__1_contigs__length_11766 LN:11766 skipping SAM header line: @SQ SN:PGA_scaffold64348__1_contigs__length_27043 LN:27043 skipping SAM header line: @SQ SN:PGA_scaffold64350__1_contigs__length_12544 LN:12544 skipping SAM header line: @SQ SN:PGA_scaffold64351__1_contigs__length_23484 LN:23484 skipping SAM header line: @SQ SN:PGA_scaffold64352__1_contigs__length_40037 LN:40037 skipping SAM header line: @SQ SN:PGA_scaffold64367__1_contigs__length_11271 LN:11271 skipping SAM header line: @SQ SN:PGA_scaffold64369__1_contigs__length_11442 LN:11442 skipping SAM header line: @SQ SN:PGA_scaffold64370__1_contigs__length_10062 LN:10062 skipping SAM header line: @SQ SN:PGA_scaffold64379__1_contigs__length_15277 LN:15277 skipping SAM header line: @SQ SN:PGA_scaffold64383__1_contigs__length_88001 LN:88001 skipping SAM header line: @SQ SN:PGA_scaffold64391__1_contigs__length_16416 LN:16416 skipping SAM header line: @SQ SN:PGA_scaffold64393__1_contigs__length_26270 LN:26270 skipping SAM header line: @SQ SN:PGA_scaffold64394__1_contigs__length_33404 LN:33404 skipping SAM header line: @SQ SN:PGA_scaffold64404__1_contigs__length_11282 LN:11282 skipping SAM header line: @SQ SN:PGA_scaffold64406__1_contigs__length_11376 LN:11376 skipping SAM header line: @SQ SN:PGA_scaffold64407__1_contigs__length_10817 LN:10817 skipping SAM header line: @SQ SN:PGA_scaffold64413__1_contigs__length_24489 LN:24489 skipping SAM header line: @SQ SN:PGA_scaffold64418__1_contigs__length_13923 LN:13923 skipping SAM header line: @SQ SN:PGA_scaffold64420__1_contigs__length_10191 LN:10191 skipping SAM header line: @SQ SN:PGA_scaffold64424__1_contigs__length_18909 LN:18909 skipping SAM header line: @SQ SN:PGA_scaffold64425__1_contigs__length_10870 LN:10870 skipping SAM header line: @SQ SN:PGA_scaffold64426__1_contigs__length_49077 LN:49077 skipping SAM header line: @SQ SN:PGA_scaffold64437__1_contigs__length_13251 LN:13251 skipping SAM header line: @SQ SN:PGA_scaffold64445__1_contigs__length_19583 LN:19583 skipping SAM header line: @SQ SN:PGA_scaffold64446__1_contigs__length_12816 LN:12816 skipping SAM header line: @SQ SN:PGA_scaffold64451__1_contigs__length_18104 LN:18104 skipping SAM header line: @SQ SN:PGA_scaffold64452__1_contigs__length_14173 LN:14173 skipping SAM header line: @SQ SN:PGA_scaffold64453__1_contigs__length_12895 LN:12895 skipping SAM header line: @SQ SN:PGA_scaffold64455__1_contigs__length_20983 LN:20983 skipping SAM header line: @SQ SN:PGA_scaffold64456__1_contigs__length_38607 LN:38607 skipping SAM header line: @SQ SN:PGA_scaffold64457__1_contigs__length_13537 LN:13537 skipping SAM header line: @SQ SN:PGA_scaffold64458__1_contigs__length_13221 LN:13221 skipping SAM header line: @SQ SN:PGA_scaffold64461__1_contigs__length_13420 LN:13420 skipping SAM header line: @SQ SN:PGA_scaffold64462__1_contigs__length_30068 LN:30068 skipping SAM header line: @SQ SN:PGA_scaffold64465__1_contigs__length_42085 LN:42085 skipping SAM header line: @SQ SN:PGA_scaffold64466__1_contigs__length_38330 LN:38330 skipping SAM header line: @SQ SN:PGA_scaffold64468__1_contigs__length_10753 LN:10753 skipping SAM header line: @SQ SN:PGA_scaffold64470__1_contigs__length_48847 LN:48847 skipping SAM header line: @SQ SN:PGA_scaffold64471__1_contigs__length_34271 LN:34271 skipping SAM header line: @SQ SN:PGA_scaffold64472__1_contigs__length_17024 LN:17024 skipping SAM header line: @SQ SN:PGA_scaffold64473__1_contigs__length_33437 LN:33437 skipping SAM header line: @SQ SN:PGA_scaffold64474__1_contigs__length_10658 LN:10658 skipping SAM header line: @SQ SN:PGA_scaffold64475__1_contigs__length_12937 LN:12937 skipping SAM header line: @SQ SN:PGA_scaffold64482__1_contigs__length_24406 LN:24406 skipping SAM header line: @SQ SN:PGA_scaffold64491__1_contigs__length_10063 LN:10063 skipping SAM header line: @SQ SN:PGA_scaffold64496__1_contigs__length_12925 LN:12925 skipping SAM header line: @SQ SN:PGA_scaffold64511__1_contigs__length_10348 LN:10348 skipping SAM header line: @SQ SN:PGA_scaffold64518__1_contigs__length_11803 LN:11803 skipping SAM header line: @SQ SN:PGA_scaffold64529__1_contigs__length_33564 LN:33564 skipping SAM header line: @SQ SN:PGA_scaffold64530__1_contigs__length_30567 LN:30567 skipping SAM header line: @SQ SN:PGA_scaffold64531__1_contigs__length_19025 LN:19025 skipping SAM header line: @SQ SN:PGA_scaffold64534__1_contigs__length_14443 LN:14443 skipping SAM header line: @SQ SN:PGA_scaffold64538__1_contigs__length_16220 LN:16220 skipping SAM header line: @SQ SN:PGA_scaffold64559__1_contigs__length_14419 LN:14419 skipping SAM header line: @SQ SN:PGA_scaffold64571__1_contigs__length_15984 LN:15984 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64608__1_contigs__length_49602 LN:49602 skipping SAM header line: @SQ SN:PGA_scaffold64609__1_contigs__length_21660 LN:21660 skipping SAM header line: @SQ SN:PGA_scaffold64613__1_contigs__length_42419 LN:42419 skipping SAM header line: @SQ SN:PGA_scaffold64614__1_contigs__length_26585 LN:26585 skipping SAM header line: @SQ SN:PGA_scaffold64615__1_contigs__length_27488 LN:27488 skipping SAM header line: @SQ SN:PGA_scaffold64621__1_contigs__length_11612 LN:11612 skipping SAM header line: @SQ SN:PGA_scaffold64639__1_contigs__length_35410 LN:35410 skipping SAM header line: @SQ SN:PGA_scaffold64643__1_contigs__length_10920 LN:10920 skipping SAM header line: @SQ SN:PGA_scaffold64648__1_contigs__length_15823 LN:15823 skipping SAM header line: @SQ SN:PGA_scaffold64656__1_contigs__length_21619 LN:21619 skipping SAM header line: @SQ SN:PGA_scaffold64660__1_contigs__length_45703 LN:45703 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64706__1_contigs__length_13787 LN:13787 skipping SAM header line: @SQ SN:PGA_scaffold64707__1_contigs__length_24159 LN:24159 skipping SAM header line: @SQ SN:PGA_scaffold64708__1_contigs__length_12853 LN:12853 skipping SAM header line: @SQ SN:PGA_scaffold64709__1_contigs__length_19526 LN:19526 skipping SAM header line: @SQ SN:PGA_scaffold64729__1_contigs__length_14606 LN:14606 skipping SAM header line: @SQ SN:PGA_scaffold64736__1_contigs__length_10682 LN:10682 skipping SAM header line: @SQ SN:PGA_scaffold64737__1_contigs__length_40853 LN:40853 skipping SAM header line: @SQ SN:PGA_scaffold64739__1_contigs__length_13088 LN:13088 skipping SAM header line: @SQ SN:PGA_scaffold64740__1_contigs__length_11834 LN:11834 skipping SAM header line: @SQ SN:PGA_scaffold64742__1_contigs__length_65506 LN:65506 skipping SAM header line: @SQ SN:PGA_scaffold64745__1_contigs__length_21099 LN:21099 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64797__1_contigs__length_12789 LN:12789 skipping SAM header line: @SQ SN:PGA_scaffold64799__1_contigs__length_10365 LN:10365 skipping SAM header line: @SQ SN:PGA_scaffold64802__1_contigs__length_28858 LN:28858 skipping SAM header line: @SQ SN:PGA_scaffold64804__1_contigs__length_11973 LN:11973 skipping SAM header line: @SQ SN:PGA_scaffold64806__1_contigs__length_15366 LN:15366 skipping SAM header line: @SQ SN:PGA_scaffold64807__1_contigs__length_22513 LN:22513 skipping SAM header line: @SQ SN:PGA_scaffold64816__1_contigs__length_10032 LN:10032 skipping SAM header line: @SQ SN:PGA_scaffold64818__1_contigs__length_10030 LN:10030 skipping SAM header line: @SQ SN:PGA_scaffold64824__1_contigs__length_15264 LN:15264 skipping SAM header line: @SQ SN:PGA_scaffold64825__1_contigs__length_54777 LN:54777 skipping SAM header line: @SQ SN:PGA_scaffold64826__1_contigs__length_30214 LN:30214 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64889__1_contigs__length_13128 LN:13128 skipping SAM header line: @SQ SN:PGA_scaffold64896__1_contigs__length_13912 LN:13912 skipping SAM header line: @SQ SN:PGA_scaffold64898__1_contigs__length_27232 LN:27232 skipping SAM header line: @SQ SN:PGA_scaffold64901__1_contigs__length_21452 LN:21452 skipping SAM header line: @SQ SN:PGA_scaffold64903__1_contigs__length_42771 LN:42771 skipping SAM header line: @SQ SN:PGA_scaffold64931__1_contigs__length_44617 LN:44617 skipping SAM header line: @SQ SN:PGA_scaffold64934__1_contigs__length_30286 LN:30286 skipping SAM header line: @SQ SN:PGA_scaffold64938__1_contigs__length_24875 LN:24875 skipping SAM header line: @SQ SN:PGA_scaffold64940__1_contigs__length_15129 LN:15129 skipping SAM header line: @SQ SN:PGA_scaffold64943__1_contigs__length_10709 LN:10709 skipping SAM header line: @SQ SN:PGA_scaffold64944__1_contigs__length_19091 LN:19091 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64983__1_contigs__length_10453 LN:10453 skipping SAM header line: @SQ SN:PGA_scaffold64984__1_contigs__length_10974 LN:10974 skipping SAM header line: @SQ SN:PGA_scaffold64995__1_contigs__length_10387 LN:10387 skipping SAM header line: @SQ SN:PGA_scaffold65000__1_contigs__length_10516 LN:10516 skipping SAM header line: @SQ SN:PGA_scaffold65002__1_contigs__length_12827 LN:12827 skipping SAM header line: @SQ SN:PGA_scaffold65003__1_contigs__length_14582 LN:14582 skipping SAM header line: @SQ SN:PGA_scaffold65008__1_contigs__length_15780 LN:15780 skipping SAM header line: @SQ SN:PGA_scaffold65012__1_contigs__length_15421 LN:15421 skipping SAM header line: @SQ SN:PGA_scaffold65016__1_contigs__length_12555 LN:12555 skipping SAM header line: @SQ SN:PGA_scaffold65018__1_contigs__length_14309 LN:14309 skipping SAM header line: @SQ SN:PGA_scaffold65019__1_contigs__length_15125 LN:15125 skipping SAM header line: @SQ SN:PGA_scaffold65021__1_contigs__length_40132 LN:40132 skipping SAM header line: @SQ SN:PGA_scaffold65022__1_contigs__length_13984 LN:13984 skipping SAM header line: @SQ SN:PGA_scaffold65027__1_contigs__length_20701 LN:20701 skipping SAM header line: @SQ SN:PGA_scaffold65028__1_contigs__length_11248 LN:11248 skipping SAM header line: @SQ SN:PGA_scaffold65031__1_contigs__length_52072 LN:52072 skipping SAM header line: @SQ SN:PGA_scaffold65032__1_contigs__length_16542 LN:16542 skipping SAM header line: @SQ SN:PGA_scaffold65034__1_contigs__length_15179 LN:15179 skipping SAM header line: @SQ SN:PGA_scaffold65039__1_contigs__length_13762 LN:13762 skipping SAM header line: @SQ SN:PGA_scaffold65043__1_contigs__length_21744 LN:21744 skipping SAM header line: @SQ SN:PGA_scaffold65054__1_contigs__length_21753 LN:21753 skipping SAM header line: @SQ SN:PGA_scaffold65055__1_contigs__length_11879 LN:11879 skipping SAM header line: @SQ SN:PGA_scaffold65064__1_contigs__length_15024 LN:15024 skipping SAM header line: @SQ SN:PGA_scaffold65067__1_contigs__length_16147 LN:16147 skipping SAM header line: @SQ SN:PGA_scaffold65070__1_contigs__length_19667 LN:19667 skipping SAM header line: @SQ SN:PGA_scaffold65071__1_contigs__length_24078 LN:24078 skipping SAM header line: @SQ SN:PGA_scaffold65072__1_contigs__length_13101 LN:13101 skipping SAM header line: @SQ SN:PGA_scaffold65074__1_contigs__length_11462 LN:11462 skipping SAM header line: @SQ SN:PGA_scaffold65075__1_contigs__length_23832 LN:23832 skipping SAM header line: @SQ SN:PGA_scaffold65076__1_contigs__length_23016 LN:23016 skipping SAM header line: @SQ SN:PGA_scaffold65077__1_contigs__length_78086 LN:78086 skipping SAM header line: @SQ SN:PGA_scaffold65079__1_contigs__length_38850 LN:38850 skipping SAM header line: @SQ SN:PGA_scaffold65081__1_contigs__length_24869 LN:24869 skipping SAM header line: @SQ SN:PGA_scaffold65086__1_contigs__length_44941 LN:44941 skipping SAM header line: @SQ SN:PGA_scaffold65089__1_contigs__length_56911 LN:56911 skipping SAM header line: @SQ SN:PGA_scaffold65090__1_contigs__length_21771 LN:21771 skipping SAM header line: @SQ SN:PGA_scaffold65091__1_contigs__length_44371 LN:44371 skipping SAM header line: @SQ SN:PGA_scaffold65092__1_contigs__length_25818 LN:25818 skipping SAM header line: @SQ SN:PGA_scaffold65100__1_contigs__length_10556 LN:10556 skipping SAM header line: @SQ SN:PGA_scaffold65116__1_contigs__length_38844 LN:38844 skipping SAM header line: @SQ SN:PGA_scaffold65117__1_contigs__length_11739 LN:11739 skipping SAM header line: @SQ SN:PGA_scaffold65119__1_contigs__length_57101 LN:57101 skipping SAM header line: @SQ SN:PGA_scaffold65120__1_contigs__length_16988 LN:16988 skipping SAM header line: @SQ SN:PGA_scaffold65121__1_contigs__length_10913 LN:10913 skipping SAM header line: @SQ SN:PGA_scaffold65123__1_contigs__length_12939 LN:12939 skipping SAM header line: @SQ SN:PGA_scaffold65124__1_contigs__length_12887 LN:12887 skipping SAM header line: @SQ SN:PGA_scaffold65125__1_contigs__length_19808 LN:19808 skipping SAM header line: @SQ SN:PGA_scaffold65131__1_contigs__length_26667 LN:26667 skipping SAM header line: @SQ SN:PGA_scaffold65133__1_contigs__length_18526 LN:18526 skipping SAM header line: @SQ SN:PGA_scaffold65137__1_contigs__length_19343 LN:19343 skipping SAM header line: @SQ SN:PGA_scaffold65142__1_contigs__length_12294 LN:12294 skipping SAM header line: @SQ SN:PGA_scaffold65148__1_contigs__length_15927 LN:15927 skipping SAM header line: @SQ SN:PGA_scaffold65157__1_contigs__length_10351 LN:10351 skipping SAM header line: @SQ SN:PGA_scaffold65165__1_contigs__length_13246 LN:13246 skipping SAM header line: @SQ SN:PGA_scaffold65166__1_contigs__length_16795 LN:16795 skipping SAM header line: @SQ SN:PGA_scaffold65168__1_contigs__length_10884 LN:10884 skipping SAM header line: @SQ SN:PGA_scaffold65169__1_contigs__length_12566 LN:12566 skipping SAM header line: @SQ SN:PGA_scaffold65171__1_contigs__length_46480 LN:46480 skipping SAM header line: @SQ SN:PGA_scaffold65174__1_contigs__length_38341 LN:38341 skipping SAM header line: @SQ SN:PGA_scaffold65177__1_contigs__length_10268 LN:10268 skipping SAM header line: @SQ SN:PGA_scaffold65178__1_contigs__length_12147 LN:12147 skipping SAM header line: @SQ SN:PGA_scaffold65182__1_contigs__length_18954 LN:18954 skipping SAM header line: @SQ SN:PGA_scaffold65185__1_contigs__length_24764 LN:24764 skipping SAM header line: @SQ SN:PGA_scaffold65186__1_contigs__length_41412 LN:41412 skipping SAM header line: @SQ SN:PGA_scaffold65192__1_contigs__length_22082 LN:22082 skipping SAM header line: @SQ SN:PGA_scaffold65195__1_contigs__length_13994 LN:13994 skipping SAM header line: @SQ SN:PGA_scaffold65198__1_contigs__length_44989 LN:44989 skipping SAM header line: @SQ SN:PGA_scaffold65210__1_contigs__length_25286 LN:25286 skipping SAM header line: @SQ SN:PGA_scaffold65222__1_contigs__length_26929 LN:26929 skipping SAM header line: @SQ SN:PGA_scaffold65223__1_contigs__length_18769 LN:18769 skipping SAM header line: @SQ SN:PGA_scaffold65231__1_contigs__length_21953 LN:21953 skipping SAM header line: @SQ SN:PGA_scaffold65233__1_contigs__length_13864 LN:13864 skipping SAM header line: @SQ SN:PGA_scaffold65238__1_contigs__length_11625 LN:11625 skipping SAM header line: @SQ SN:PGA_scaffold65255__1_contigs__length_59866 LN:59866 skipping SAM header line: @SQ SN:PGA_scaffold65256__1_contigs__length_11938 LN:11938 skipping SAM header line: @SQ SN:PGA_scaffold65258__1_contigs__length_16155 LN:16155 skipping SAM header line: @SQ SN:PGA_scaffold65264__1_contigs__length_14386 LN:14386 skipping SAM header line: @SQ SN:PGA_scaffold65269__1_contigs__length_14492 LN:14492 skipping SAM header line: @SQ SN:PGA_scaffold65278__1_contigs__length_62003 LN:62003 skipping SAM header line: @SQ SN:PGA_scaffold65284__1_contigs__length_50840 LN:50840 skipping SAM header line: @SQ SN:PGA_scaffold65294__1_contigs__length_11823 LN:11823 skipping SAM header line: @SQ SN:PGA_scaffold65298__1_contigs__length_10036 LN:10036 skipping SAM header line: @SQ SN:PGA_scaffold65305__1_contigs__length_40067 LN:40067 skipping SAM header line: @SQ SN:PGA_scaffold65307__1_contigs__length_57187 LN:57187 skipping SAM header line: @SQ SN:PGA_scaffold65313__1_contigs__length_38893 LN:38893 skipping SAM header line: @SQ SN:PGA_scaffold65314__1_contigs__length_14940 LN:14940 skipping SAM header line: @SQ SN:PGA_scaffold65322__1_contigs__length_27853 LN:27853 skipping SAM header line: @SQ SN:PGA_scaffold65325__1_contigs__length_12743 LN:12743 skipping SAM header line: @SQ SN:PGA_scaffold65326__1_contigs__length_16568 LN:16568 skipping SAM header line: @SQ SN:PGA_scaffold65328__1_contigs__length_13003 LN:13003 skipping SAM header line: @SQ SN:PGA_scaffold65329__1_contigs__length_30096 LN:30096 skipping SAM header line: @SQ SN:PGA_scaffold65331__1_contigs__length_16109 LN:16109 skipping SAM header line: @SQ SN:PGA_scaffold65332__1_contigs__length_26100 LN:26100 skipping SAM header line: @SQ SN:PGA_scaffold65334__1_contigs__length_27707 LN:27707 skipping SAM header line: @SQ SN:PGA_scaffold65342__1_contigs__length_11072 LN:11072 skipping SAM header line: @SQ SN:PGA_scaffold65343__1_contigs__length_19992 LN:19992 skipping SAM header line: @SQ SN:PGA_scaffold65345__1_contigs__length_22960 LN:22960 skipping SAM header line: @SQ SN:PGA_scaffold65356__1_contigs__length_44587 LN:44587 skipping SAM header line: @SQ SN:PGA_scaffold65358__1_contigs__length_23340 LN:23340 skipping SAM header line: @SQ SN:PGA_scaffold65364__1_contigs__length_19212 LN:19212 skipping SAM header line: @SQ SN:PGA_scaffold65367__1_contigs__length_13354 LN:13354 skipping SAM header line: @SQ SN:PGA_scaffold65369__1_contigs__length_27437 LN:27437 skipping SAM header line: @SQ SN:PGA_scaffold65375__1_contigs__length_19995 LN:19995 skipping SAM header line: @SQ SN:PGA_scaffold65376__1_contigs__length_15156 LN:15156 skipping SAM header line: @SQ SN:PGA_scaffold65380__1_contigs__length_11566 LN:11566 skipping SAM header line: @SQ SN:PGA_scaffold65396__1_contigs__length_12857 LN:12857 skipping SAM header line: @SQ SN:PGA_scaffold65397__1_contigs__length_13682 LN:13682 skipping SAM header line: @SQ SN:PGA_scaffold65398__1_contigs__length_63537 LN:63537 skipping SAM header line: @SQ SN:PGA_scaffold65399__1_contigs__length_61838 LN:61838 skipping SAM header line: @SQ SN:PGA_scaffold65404__1_contigs__length_19808 LN:19808 skipping SAM header line: @SQ SN:PGA_scaffold65406__1_contigs__length_15764 LN:15764 skipping SAM header line: @SQ SN:PGA_scaffold65410__1_contigs__length_18666 LN:18666 skipping SAM header line: @SQ SN:PGA_scaffold65427__1_contigs__length_16157 LN:16157 skipping SAM header line: @SQ SN:PGA_scaffold65428__1_contigs__length_13601 LN:13601 skipping SAM header line: @SQ SN:PGA_scaffold65433__1_contigs__length_18232 LN:18232 skipping SAM header line: @SQ SN:PGA_scaffold65456__1_contigs__length_14439 LN:14439 skipping SAM header line: @SQ SN:PGA_scaffold65460__1_contigs__length_18068 LN:18068 skipping SAM header line: @SQ SN:PGA_scaffold65461__1_contigs__length_37665 LN:37665 skipping SAM header line: @SQ SN:PGA_scaffold65463__1_contigs__length_10091 LN:10091 skipping SAM header line: @SQ SN:PGA_scaffold65465__1_contigs__length_31799 LN:31799 skipping SAM header line: @SQ SN:PGA_scaffold65467__1_contigs__length_10203 LN:10203 skipping SAM header line: @SQ SN:PGA_scaffold65468__1_contigs__length_15284 LN:15284 skipping SAM header line: @SQ SN:PGA_scaffold65471__1_contigs__length_19766 LN:19766 skipping SAM header line: @SQ SN:PGA_scaffold65477__1_contigs__length_22326 LN:22326 skipping SAM header line: @SQ SN:PGA_scaffold65479__1_contigs__length_16083 LN:16083 skipping SAM header line: @SQ SN:PGA_scaffold65483__1_contigs__length_11353 LN:11353 skipping SAM header line: @SQ SN:PGA_scaffold65490__1_contigs__length_11894 LN:11894 skipping SAM header line: @SQ SN:PGA_scaffold65495__1_contigs__length_14469 LN:14469 skipping SAM header line: @SQ SN:PGA_scaffold65497__1_contigs__length_13869 LN:13869 skipping SAM header line: @SQ SN:PGA_scaffold65504__1_contigs__length_26657 LN:26657 skipping SAM header line: @SQ SN:PGA_scaffold65505__1_contigs__length_41126 LN:41126 skipping SAM header line: @SQ SN:PGA_scaffold65507__1_contigs__length_18808 LN:18808 skipping SAM header line: @SQ SN:PGA_scaffold65508__1_contigs__length_27459 LN:27459 skipping SAM header line: @SQ SN:PGA_scaffold65509__1_contigs__length_28239 LN:28239 skipping SAM header line: @SQ SN:PGA_scaffold65510__1_contigs__length_14919 LN:14919 skipping SAM header line: @SQ SN:PGA_scaffold65513__1_contigs__length_10904 LN:10904 skipping SAM header line: @SQ SN:PGA_scaffold65517__1_contigs__length_15888 LN:15888 skipping SAM header line: @SQ SN:PGA_scaffold65518__1_contigs__length_17344 LN:17344 skipping SAM header line: @SQ SN:PGA_scaffold65519__1_contigs__length_25989 LN:25989 skipping SAM header line: @SQ SN:PGA_scaffold65524__1_contigs__length_29654 LN:29654 skipping SAM header line: @SQ SN:PGA_scaffold65529__1_contigs__length_14937 LN:14937 skipping SAM header line: @SQ SN:PGA_scaffold65532__1_contigs__length_13710 LN:13710 skipping SAM header line: @SQ SN:PGA_scaffold65536__1_contigs__length_21189 LN:21189 skipping SAM header line: @SQ SN:PGA_scaffold65539__1_contigs__length_12366 LN:12366 skipping SAM header line: @SQ SN:PGA_scaffold65553__1_contigs__length_22482 LN:22482 skipping SAM header line: @SQ SN:PGA_scaffold65556__1_contigs__length_24648 LN:24648 skipping SAM header line: @SQ SN:PGA_scaffold65559__1_contigs__length_13923 LN:13923 skipping SAM header line: @SQ SN:PGA_scaffold65560__1_contigs__length_24783 LN:24783 skipping SAM header line: @SQ SN:PGA_scaffold65561__1_contigs__length_14767 LN:14767 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold65632__1_contigs__length_11848 LN:11848 skipping SAM header line: @SQ SN:PGA_scaffold65637__1_contigs__length_12182 LN:12182 skipping SAM header line: @SQ SN:PGA_scaffold65638__1_contigs__length_15839 LN:15839 skipping SAM header line: @SQ SN:PGA_scaffold65639__1_contigs__length_21624 LN:21624 skipping SAM header line: @SQ SN:PGA_scaffold65645__1_contigs__length_19287 LN:19287 skipping SAM header line: @SQ SN:PGA_scaffold65646__1_contigs__length_19068 LN:19068 skipping SAM header line: @SQ SN:PGA_scaffold65650__1_contigs__length_26488 LN:26488 skipping SAM header line: @SQ SN:PGA_scaffold65653__1_contigs__length_32424 LN:32424 skipping SAM header line: @SQ SN:PGA_scaffold65660__1_contigs__length_10546 LN:10546 skipping SAM header line: @SQ SN:PGA_scaffold65683__1_contigs__length_19599 LN:19599 skipping SAM header line: @SQ SN:PGA_scaffold65685__1_contigs__length_28821 LN:28821 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold65742__1_contigs__length_18921 LN:18921 skipping SAM header line: @SQ SN:PGA_scaffold65744__1_contigs__length_11253 LN:11253 skipping SAM header line: @SQ SN:PGA_scaffold65760__1_contigs__length_13056 LN:13056 skipping SAM header line: @SQ SN:PGA_scaffold65765__1_contigs__length_39217 LN:39217 skipping SAM header line: @SQ SN:PGA_scaffold65766__1_contigs__length_14485 LN:14485 skipping SAM header line: @SQ SN:PGA_scaffold65777__1_contigs__length_32724 LN:32724 skipping SAM header line: @SQ SN:PGA_scaffold65780__1_contigs__length_14654 LN:14654 skipping SAM header line: @SQ SN:PGA_scaffold65781__1_contigs__length_42302 LN:42302 skipping SAM header line: @SQ SN:PGA_scaffold65786__1_contigs__length_56597 LN:56597 skipping SAM header line: @SQ SN:PGA_scaffold65792__1_contigs__length_10129 LN:10129 skipping SAM header line: @SQ SN:PGA_scaffold65807__1_contigs__length_35379 LN:35379 skipping SAM header line: @SQ SN:PGA_scaffold65809__1_contigs__length_36632 LN:36632 skipping SAM header line: @SQ SN:PGA_scaffold65815__1_contigs__length_49308 LN:49308 skipping SAM header line: @SQ SN:PGA_scaffold65820__1_contigs__length_14018 LN:14018 skipping SAM header line: @SQ SN:PGA_scaffold65822__1_contigs__length_14579 LN:14579 skipping SAM header line: @SQ SN:PGA_scaffold65827__1_contigs__length_19038 LN:19038 skipping SAM header line: @SQ SN:PGA_scaffold65828__1_contigs__length_25685 LN:25685 skipping SAM header line: @SQ SN:PGA_scaffold65830__1_contigs__length_17413 LN:17413 skipping SAM header line: @SQ SN:PGA_scaffold65832__1_contigs__length_10335 LN:10335 skipping SAM header line: @SQ SN:PGA_scaffold65846__1_contigs__length_33986 LN:33986 skipping SAM header line: @SQ SN:PGA_scaffold65847__1_contigs__length_12106 LN:12106 skipping SAM header line: @SQ SN:PGA_scaffold65851__1_contigs__length_44621 LN:44621 skipping SAM header line: @SQ SN:PGA_scaffold65862__1_contigs__length_10836 LN:10836 skipping SAM header line: @SQ SN:PGA_scaffold65864__1_contigs__length_10828 LN:10828 skipping SAM header line: @SQ SN:PGA_scaffold65866__1_contigs__length_90471 LN:90471 skipping SAM header line: @SQ SN:PGA_scaffold65867__1_contigs__length_17556 LN:17556 skipping SAM header line: @SQ SN:PGA_scaffold65869__1_contigs__length_21243 LN:21243 skipping SAM header line: @SQ SN:PGA_scaffold65871__1_contigs__length_13903 LN:13903 skipping SAM header line: @SQ SN:PGA_scaffold65878__1_contigs__length_13880 LN:13880 skipping SAM header line: @SQ SN:PGA_scaffold65885__1_contigs__length_12774 LN:12774 skipping SAM header line: @SQ SN:PGA_scaffold65889__1_contigs__length_16886 LN:16886 skipping SAM header line: @SQ SN:PGA_scaffold65896__1_contigs__length_13857 LN:13857 skipping SAM header line: @SQ SN:PGA_scaffold65899__1_contigs__length_15948 LN:15948 skipping SAM header line: @SQ SN:PGA_scaffold65900__1_contigs__length_12381 LN:12381 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold65953__1_contigs__length_16865 LN:16865 skipping SAM header line: @SQ SN:PGA_scaffold65954__1_contigs__length_39725 LN:39725 skipping SAM header line: @SQ SN:PGA_scaffold65959__1_contigs__length_16592 LN:16592 skipping SAM header line: @SQ SN:PGA_scaffold65964__1_contigs__length_22780 LN:22780 skipping SAM header line: @SQ SN:PGA_scaffold65967__1_contigs__length_36096 LN:36096 skipping SAM header line: @SQ SN:PGA_scaffold65971__1_contigs__length_11066 LN:11066 skipping SAM header line: @SQ SN:PGA_scaffold65979__1_contigs__length_18704 LN:18704 skipping SAM header line: @SQ SN:PGA_scaffold65981__1_contigs__length_15865 LN:15865 skipping SAM header line: @SQ SN:PGA_scaffold65982__1_contigs__length_11815 LN:11815 skipping SAM header line: @SQ SN:PGA_scaffold65983__1_contigs__length_18145 LN:18145 skipping SAM header line: @SQ SN:PGA_scaffold65984__1_contigs__length_17708 LN:17708 skipping SAM header line: @SQ SN:PGA_scaffold65985__1_contigs__length_10748 LN:10748 skipping SAM header line: @SQ SN:PGA_scaffold65986__1_contigs__length_23551 LN:23551 skipping SAM header line: @SQ SN:PGA_scaffold65987__1_contigs__length_52560 LN:52560 skipping SAM header line: @SQ SN:PGA_scaffold65989__1_contigs__length_15212 LN:15212 skipping SAM header line: @SQ SN:PGA_scaffold65990__1_contigs__length_10588 LN:10588 skipping SAM header line: @SQ SN:PGA_scaffold65991__1_contigs__length_14885 LN:14885 skipping SAM header line: @SQ SN:PGA_scaffold65992__1_contigs__length_21803 LN:21803 skipping SAM header line: @SQ SN:PGA_scaffold65993__1_contigs__length_17759 LN:17759 skipping SAM header line: @SQ SN:PGA_scaffold66001__1_contigs__length_39013 LN:39013 skipping SAM header line: @SQ SN:PGA_scaffold66002__1_contigs__length_11177 LN:11177 skipping SAM header line: @SQ SN:PGA_scaffold66005__1_contigs__length_13399 LN:13399 skipping SAM header line: @SQ SN:PGA_scaffold66006__1_contigs__length_15825 LN:15825 skipping SAM header line: @SQ SN:PGA_scaffold66010__1_contigs__length_12363 LN:12363 skipping SAM header line: @SQ SN:PGA_scaffold66012__1_contigs__length_11098 LN:11098 skipping SAM header line: @SQ SN:PGA_scaffold66017__1_contigs__length_20779 LN:20779 skipping SAM header line: @SQ SN:PGA_scaffold66019__1_contigs__length_15517 LN:15517 skipping SAM header line: @SQ SN:PGA_scaffold66022__1_contigs__length_21737 LN:21737 skipping SAM header line: @SQ SN:PGA_scaffold66023__1_contigs__length_16689 LN:16689 skipping SAM header line: @SQ SN:PGA_scaffold66030__1_contigs__length_23210 LN:23210 skipping SAM header line: @SQ SN:PGA_scaffold66031__1_contigs__length_24994 LN:24994 skipping SAM header line: @SQ SN:PGA_scaffold66034__1_contigs__length_13917 LN:13917 skipping SAM header line: @SQ SN:PGA_scaffold66035__1_contigs__length_10563 LN:10563 skipping SAM header line: @SQ SN:PGA_scaffold66037__1_contigs__length_37904 LN:37904 skipping SAM header line: @SQ SN:PGA_scaffold66038__1_contigs__length_20194 LN:20194 skipping SAM header line: @SQ SN:PGA_scaffold66039__1_contigs__length_20242 LN:20242 skipping SAM header line: @SQ SN:PGA_scaffold66041__1_contigs__length_11271 LN:11271 skipping SAM header line: @SQ SN:PGA_scaffold66060__1_contigs__length_47051 LN:47051 skipping SAM header line: @SQ SN:PGA_scaffold66062__1_contigs__length_35720 LN:35720 skipping SAM header line: @SQ SN:PGA_scaffold66064__1_contigs__length_29051 LN:29051 skipping SAM header line: @SQ SN:PGA_scaffold66068__1_contigs__length_17211 LN:17211 skipping SAM header line: @SQ SN:PGA_scaffold66071__1_contigs__length_14173 LN:14173 skipping SAM header line: @SQ SN:PGA_scaffold66073__1_contigs__length_21616 LN:21616 skipping SAM header line: @SQ SN:PGA_scaffold66074__1_contigs__length_18986 LN:18986 skipping SAM header line: @SQ SN:PGA_scaffold66075__1_contigs__length_20302 LN:20302 skipping SAM header line: @SQ SN:PGA_scaffold66076__1_contigs__length_10694 LN:10694 skipping SAM header line: @SQ SN:PGA_scaffold66079__1_contigs__length_37644 LN:37644 skipping SAM header line: @SQ SN:PGA_scaffold66085__1_contigs__length_16144 LN:16144 skipping SAM header line: @SQ SN:PGA_scaffold66087__1_contigs__length_19388 LN:19388 skipping SAM header line: @SQ SN:PGA_scaffold66089__1_contigs__length_25837 LN:25837 skipping SAM header line: @SQ SN:PGA_scaffold66090__1_contigs__length_11512 LN:11512 skipping SAM header line: @SQ SN:PGA_scaffold66099__1_contigs__length_15439 LN:15439 skipping SAM header line: @SQ SN:PGA_scaffold66100__1_contigs__length_11248 LN:11248 skipping SAM header line: @SQ SN:PGA_scaffold66101__1_contigs__length_15974 LN:15974 skipping SAM header line: @SQ SN:PGA_scaffold66102__1_contigs__length_38669 LN:38669 skipping SAM header line: @SQ SN:PGA_scaffold66107__1_contigs__length_14225 LN:14225 skipping SAM header line: @SQ SN:PGA_scaffold66109__1_contigs__length_12591 LN:12591 skipping SAM header line: @SQ SN:PGA_scaffold66112__1_contigs__length_11708 LN:11708 skipping SAM header line: @SQ SN:PGA_scaffold66123__1_contigs__length_11886 LN:11886 skipping SAM header line: @SQ SN:PGA_scaffold66131__1_contigs__length_10474 LN:10474 skipping SAM header line: @SQ SN:PGA_scaffold66132__1_contigs__length_39192 LN:39192 skipping SAM header line: @SQ SN:PGA_scaffold66133__1_contigs__length_13223 LN:13223 skipping SAM header line: @SQ SN:PGA_scaffold66134__1_contigs__length_12828 LN:12828 skipping SAM header line: @SQ SN:PGA_scaffold66141__1_contigs__length_15328 LN:15328 skipping SAM header line: @SQ SN:PGA_scaffold66146__1_contigs__length_10967 LN:10967 skipping SAM header line: @SQ SN:PGA_scaffold66150__1_contigs__length_18475 LN:18475 skipping SAM header line: @SQ SN:PGA_scaffold66162__1_contigs__length_25196 LN:25196 skipping SAM header line: @SQ SN:PGA_scaffold66165__1_contigs__length_20482 LN:20482 skipping SAM header line: @SQ SN:PGA_scaffold66167__1_contigs__length_24467 LN:24467 skipping SAM header line: @SQ SN:PGA_scaffold66172__1_contigs__length_62844 LN:62844 skipping SAM header line: @SQ SN:PGA_scaffold66173__1_contigs__length_34319 LN:34319 skipping SAM header line: @SQ SN:PGA_scaffold66175__1_contigs__length_16886 LN:16886 skipping SAM header line: @SQ SN:PGA_scaffold66176__1_contigs__length_16992 LN:16992 skipping SAM header line: @SQ SN:PGA_scaffold66178__1_contigs__length_49601 LN:49601 skipping SAM header line: @SQ SN:PGA_scaffold66179__1_contigs__length_29083 LN:29083 skipping SAM header line: @SQ SN:PGA_scaffold66180__1_contigs__length_25239 LN:25239 skipping SAM header line: @SQ SN:PGA_scaffold66183__1_contigs__length_27194 LN:27194 skipping SAM header line: @SQ SN:PGA_scaffold66186__1_contigs__length_45928 LN:45928 skipping SAM header line: @SQ SN:PGA_scaffold66196__1_contigs__length_53841 LN:53841 skipping SAM header line: @SQ SN:PGA_scaffold66199__1_contigs__length_14755 LN:14755 skipping SAM header line: @SQ SN:PGA_scaffold66204__1_contigs__length_28307 LN:28307 skipping SAM header line: @SQ SN:PGA_scaffold66206__1_contigs__length_15002 LN:15002 skipping SAM header line: @SQ SN:PGA_scaffold66212__1_contigs__length_32503 LN:32503 skipping SAM header line: @SQ SN:PGA_scaffold66221__1_contigs__length_11333 LN:11333 skipping SAM header line: @SQ SN:PGA_scaffold66223__1_contigs__length_22656 LN:22656 skipping SAM header line: @SQ SN:PGA_scaffold66224__1_contigs__length_29783 LN:29783 skipping SAM header line: @SQ SN:PGA_scaffold66227__1_contigs__length_18370 LN:18370 skipping SAM header line: @SQ SN:PGA_scaffold66228__1_contigs__length_11413 LN:11413 skipping SAM header line: @SQ SN:PGA_scaffold66231__1_contigs__length_17155 LN:17155 skipping SAM header line: @SQ SN:PGA_scaffold66249__1_contigs__length_10879 LN:10879 skipping SAM header line: @SQ SN:PGA_scaffold66255__1_contigs__length_16411 LN:16411 skipping SAM header line: @SQ SN:PGA_scaffold66275__1_contigs__length_11711 LN:11711 skipping SAM header line: @SQ SN:PGA_scaffold66276__1_contigs__length_39820 LN:39820 skipping SAM header line: @SQ SN:PGA_scaffold66279__1_contigs__length_13482 LN:13482 skipping SAM header line: @SQ SN:PGA_scaffold66293__1_contigs__length_33304 LN:33304 skipping SAM header line: @SQ SN:PGA_scaffold66299__1_contigs__length_14420 LN:14420 skipping SAM header line: @SQ SN:PGA_scaffold66312__1_contigs__length_23465 LN:23465 skipping SAM header line: @SQ SN:PGA_scaffold66313__1_contigs__length_13737 LN:13737 skipping SAM header line: @SQ SN:PGA_scaffold66314__1_contigs__length_13936 LN:13936 skipping SAM header line: @SQ SN:PGA_scaffold66315__1_contigs__length_22685 LN:22685 skipping SAM header line: @SQ SN:PGA_scaffold66317__1_contigs__length_18051 LN:18051 skipping SAM header line: @SQ SN:PGA_scaffold66318__1_contigs__length_45619 LN:45619 skipping SAM header line: @SQ SN:PGA_scaffold66319__1_contigs__length_13220 LN:13220 skipping SAM header line: @SQ SN:PGA_scaffold66321__1_contigs__length_24046 LN:24046 skipping SAM header line: @SQ SN:PGA_scaffold66325__1_contigs__length_13533 LN:13533 skipping SAM header line: @SQ SN:PGA_scaffold66326__1_contigs__length_17007 LN:17007 skipping SAM header line: @SQ SN:PGA_scaffold66327__1_contigs__length_17691 LN:17691 skipping SAM header line: @SQ SN:PGA_scaffold66338__1_contigs__length_30756 LN:30756 skipping SAM header line: @SQ SN:PGA_scaffold66345__1_contigs__length_24351 LN:24351 skipping SAM header line: @SQ SN:PGA_scaffold66348__1_contigs__length_24727 LN:24727 skipping SAM header line: @SQ SN:PGA_scaffold66351__1_contigs__length_16809 LN:16809 skipping SAM header line: @SQ SN:PGA_scaffold66354__1_contigs__length_13066 LN:13066 skipping SAM header line: @SQ SN:PGA_scaffold66370__1_contigs__length_14947 LN:14947 skipping SAM header line: @SQ SN:PGA_scaffold66372__1_contigs__length_10922 LN:10922 skipping SAM header line: @SQ SN:PGA_scaffold66373__1_contigs__length_11820 LN:11820 skipping SAM header line: @SQ SN:PGA_scaffold66379__1_contigs__length_24336 LN:24336 skipping SAM header line: @SQ SN:PGA_scaffold66380__1_contigs__length_16348 LN:16348 skipping SAM header line: @SQ SN:PGA_scaffold66384__1_contigs__length_11444 LN:11444 skipping SAM header line: @SQ SN:PGA_scaffold66389__1_contigs__length_12655 LN:12655 skipping SAM header line: @SQ SN:PGA_scaffold66391__1_contigs__length_17056 LN:17056 skipping SAM header line: @SQ SN:PGA_scaffold66398__1_contigs__length_11486 LN:11486 skipping SAM header line: @SQ SN:PGA_scaffold66399__1_contigs__length_42456 LN:42456 skipping SAM header line: @SQ SN:PGA_scaffold66415__1_contigs__length_11665 LN:11665 skipping SAM header line: @SQ SN:PGA_scaffold66416__1_contigs__length_22192 LN:22192 skipping SAM header line: @SQ SN:PGA_scaffold66419__1_contigs__length_49715 LN:49715 skipping SAM header line: @SQ SN:PGA_scaffold66420__1_contigs__length_10456 LN:10456 skipping SAM header line: @SQ SN:PGA_scaffold66425__1_contigs__length_11529 LN:11529 skipping SAM header line: @SQ SN:PGA_scaffold66427__1_contigs__length_12257 LN:12257 skipping SAM header line: @SQ SN:PGA_scaffold66429__1_contigs__length_27149 LN:27149 skipping SAM header line: @SQ SN:PGA_scaffold66434__1_contigs__length_46589 LN:46589 skipping SAM header line: @SQ SN:PGA_scaffold66449__1_contigs__length_25284 LN:25284 skipping SAM header line: @SQ SN:PGA_scaffold66452__1_contigs__length_42482 LN:42482 skipping SAM header line: @SQ SN:PGA_scaffold66453__1_contigs__length_11834 LN:11834 skipping SAM header line: @SQ SN:PGA_scaffold66457__1_contigs__length_12044 LN:12044 skipping SAM header line: @SQ SN:PGA_scaffold66458__1_contigs__length_15028 LN:15028 skipping SAM header line: @SQ SN:PGA_scaffold66460__1_contigs__length_10318 LN:10318 skipping SAM header line: @SQ SN:PGA_scaffold66474__1_contigs__length_11886 LN:11886 skipping SAM header line: @SQ SN:PGA_scaffold66479__1_contigs__length_16243 LN:16243 skipping SAM header line: @SQ SN:PGA_scaffold66481__1_contigs__length_32127 LN:32127 skipping SAM header line: @SQ SN:PGA_scaffold66502__1_contigs__length_11857 LN:11857 skipping SAM header line: @SQ SN:PGA_scaffold66508__1_contigs__length_15723 LN:15723 skipping SAM header line: @SQ SN:PGA_scaffold66510__1_contigs__length_27211 LN:27211 skipping SAM header line: @SQ SN:PGA_scaffold66513__1_contigs__length_33853 LN:33853 skipping SAM header line: @SQ SN:PGA_scaffold66514__1_contigs__length_10621 LN:10621 skipping SAM header line: @SQ SN:PGA_scaffold66519__1_contigs__length_33851 LN:33851 skipping SAM header line: @SQ SN:PGA_scaffold66520__1_contigs__length_13267 LN:13267 skipping SAM header line: @SQ SN:PGA_scaffold66526__1_contigs__length_11820 LN:11820 skipping SAM header line: @SQ SN:PGA_scaffold66527__1_contigs__length_27192 LN:27192 skipping SAM header line: @SQ SN:PGA_scaffold66529__1_contigs__length_10564 LN:10564 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold66578__1_contigs__length_12023 LN:12023 skipping SAM header line: @SQ SN:PGA_scaffold66580__1_contigs__length_10353 LN:10353 skipping SAM header line: @SQ SN:PGA_scaffold66583__1_contigs__length_17126 LN:17126 skipping SAM header line: @SQ SN:PGA_scaffold66585__1_contigs__length_19317 LN:19317 skipping SAM header line: @SQ SN:PGA_scaffold66586__1_contigs__length_14244 LN:14244 skipping SAM header line: @SQ SN:PGA_scaffold66591__1_contigs__length_15885 LN:15885 skipping SAM header line: @SQ SN:PGA_scaffold66592__1_contigs__length_26732 LN:26732 skipping SAM header line: @SQ SN:PGA_scaffold66594__1_contigs__length_45007 LN:45007 skipping SAM header line: @SQ SN:PGA_scaffold66603__1_contigs__length_10929 LN:10929 skipping SAM header line: @SQ SN:PGA_scaffold66608__1_contigs__length_13403 LN:13403 skipping SAM header line: @SQ SN:PGA_scaffold66616__1_contigs__length_22030 LN:22030 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold66665__1_contigs__length_10115 LN:10115 skipping SAM header line: @SQ SN:PGA_scaffold66666__1_contigs__length_58206 LN:58206 skipping SAM header line: @SQ SN:PGA_scaffold66673__1_contigs__length_20693 LN:20693 skipping SAM header line: @SQ SN:PGA_scaffold66674__1_contigs__length_30853 LN:30853 skipping SAM header line: @SQ SN:PGA_scaffold66681__1_contigs__length_22743 LN:22743 skipping SAM header line: @SQ SN:PGA_scaffold66682__1_contigs__length_34382 LN:34382 skipping SAM header line: @SQ SN:PGA_scaffold66694__1_contigs__length_20870 LN:20870 skipping SAM header line: @SQ SN:PGA_scaffold66695__1_contigs__length_12530 LN:12530 skipping SAM header line: @SQ SN:PGA_scaffold66696__1_contigs__length_14570 LN:14570 skipping SAM header line: @SQ SN:PGA_scaffold66703__1_contigs__length_24458 LN:24458 skipping SAM header line: @SQ SN:PGA_scaffold66711__1_contigs__length_11082 LN:11082 skipping SAM header line: @SQ SN:PGA_scaffold66713__1_contigs__length_84867 LN:84867 skipping SAM header line: @SQ SN:PGA_scaffold66717__1_contigs__length_43668 LN:43668 skipping SAM header line: @SQ SN:PGA_scaffold66720__1_contigs__length_18959 LN:18959 skipping SAM header line: @SQ SN:PGA_scaffold66721__1_contigs__length_30932 LN:30932 skipping SAM header line: @SQ SN:PGA_scaffold66725__1_contigs__length_23098 LN:23098 skipping SAM header line: @SQ SN:PGA_scaffold66726__1_contigs__length_13036 LN:13036 skipping SAM header line: @SQ SN:PGA_scaffold66729__1_contigs__length_32971 LN:32971 skipping SAM header line: @SQ SN:PGA_scaffold66734__1_contigs__length_17403 LN:17403 skipping SAM header line: @SQ SN:PGA_scaffold66737__1_contigs__length_35128 LN:35128 skipping SAM header line: @SQ SN:PGA_scaffold66738__1_contigs__length_13340 LN:13340 skipping SAM header line: @SQ SN:PGA_scaffold66739__1_contigs__length_12250 LN:12250 skipping SAM header line: @SQ SN:PGA_scaffold66745__1_contigs__length_22344 LN:22344 skipping SAM header line: @SQ SN:PGA_scaffold66746__1_contigs__length_15247 LN:15247 skipping SAM header line: @SQ SN:PGA_scaffold66747__1_contigs__length_12645 LN:12645 skipping SAM header line: @SQ SN:PGA_scaffold66748__1_contigs__length_27405 LN:27405 skipping SAM header line: @SQ SN:PGA_scaffold66758__1_contigs__length_15784 LN:15784 skipping SAM header line: @SQ SN:PGA_scaffold66760__1_contigs__length_21010 LN:21010 skipping SAM header line: @SQ SN:PGA_scaffold66763__1_contigs__length_17200 LN:17200 skipping SAM header line: @SQ SN:PGA_scaffold66767__1_contigs__length_30996 LN:30996 skipping SAM header line: @SQ SN:PGA_scaffold66768__1_contigs__length_11823 LN:11823 skipping SAM header line: @SQ SN:PGA_scaffold66783__1_contigs__length_19576 LN:19576 skipping SAM header line: @SQ SN:PGA_scaffold66787__1_contigs__length_25096 LN:25096 skipping SAM header line: @SQ SN:PGA_scaffold66795__1_contigs__length_33697 LN:33697 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold66844__1_contigs__length_10026 LN:10026 skipping SAM header line: @SQ SN:PGA_scaffold66849__1_contigs__length_14025 LN:14025 skipping SAM header line: @SQ SN:PGA_scaffold66852__1_contigs__length_15924 LN:15924 skipping SAM header line: @SQ SN:PGA_scaffold66854__1_contigs__length_42887 LN:42887 skipping SAM header line: @SQ SN:PGA_scaffold66855__1_contigs__length_14573 LN:14573 skipping SAM header line: @SQ SN:PGA_scaffold66858__1_contigs__length_16909 LN:16909 skipping SAM header line: @SQ SN:PGA_scaffold66861__1_contigs__length_33604 LN:33604 skipping SAM header line: @SQ SN:PGA_scaffold66864__1_contigs__length_11075 LN:11075 skipping SAM header line: @SQ SN:PGA_scaffold66865__1_contigs__length_16891 LN:16891 skipping SAM header line: @SQ SN:PGA_scaffold66867__1_contigs__length_10813 LN:10813 skipping SAM header line: @SQ SN:PGA_scaffold66872__1_contigs__length_13609 LN:13609 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold66933__1_contigs__length_21566 LN:21566 skipping SAM header line: @SQ SN:PGA_scaffold66935__1_contigs__length_15200 LN:15200 skipping SAM header line: @SQ SN:PGA_scaffold66946__1_contigs__length_13116 LN:13116 skipping SAM header line: @SQ SN:PGA_scaffold66949__1_contigs__length_14570 LN:14570 skipping SAM header line: @SQ SN:PGA_scaffold66950__1_contigs__length_13095 LN:13095 skipping SAM header line: @SQ SN:PGA_scaffold66952__1_contigs__length_10588 LN:10588 skipping SAM header line: @SQ SN:PGA_scaffold66962__1_contigs__length_11297 LN:11297 skipping SAM header line: @SQ SN:PGA_scaffold66963__1_contigs__length_18632 LN:18632 skipping SAM header line: @SQ SN:PGA_scaffold66979__1_contigs__length_17362 LN:17362 skipping SAM header line: @SQ SN:PGA_scaffold66983__1_contigs__length_19284 LN:19284 skipping SAM header line: @SQ SN:PGA_scaffold66984__1_contigs__length_23335 LN:23335 skipping SAM header line: @SQ SN:PGA_scaffold66989__1_contigs__length_10147 LN:10147 skipping SAM header line: @SQ SN:PGA_scaffold66990__1_contigs__length_11628 LN:11628 skipping SAM header line: @SQ SN:PGA_scaffold67018__1_contigs__length_23463 LN:23463 skipping SAM header line: @SQ SN:PGA_scaffold67019__1_contigs__length_23268 LN:23268 skipping SAM header line: @SQ SN:PGA_scaffold67021__1_contigs__length_25218 LN:25218 skipping SAM header line: @SQ SN:PGA_scaffold67022__1_contigs__length_17070 LN:17070 skipping SAM header line: @SQ SN:PGA_scaffold67023__1_contigs__length_25423 LN:25423 skipping SAM header line: @SQ SN:PGA_scaffold67024__1_contigs__length_23679 LN:23679 skipping SAM header line: @SQ SN:PGA_scaffold67025__1_contigs__length_22246 LN:22246 skipping SAM header line: @SQ SN:PGA_scaffold67036__1_contigs__length_18251 LN:18251 skipping SAM header line: @SQ SN:PGA_scaffold67037__1_contigs__length_28064 LN:28064 skipping SAM header line: @SQ SN:PGA_scaffold67044__1_contigs__length_18485 LN:18485 skipping SAM header line: @SQ SN:PGA_scaffold67048__1_contigs__length_12413 LN:12413 skipping SAM header line: @SQ SN:PGA_scaffold67049__1_contigs__length_10565 LN:10565 skipping SAM header line: @SQ SN:PGA_scaffold67050__1_contigs__length_10043 LN:10043 skipping SAM header line: @SQ SN:PGA_scaffold67052__1_contigs__length_14818 LN:14818 skipping SAM header line: @SQ SN:PGA_scaffold67057__1_contigs__length_30266 LN:30266 skipping SAM header line: @SQ SN:PGA_scaffold67066__1_contigs__length_14408 LN:14408 skipping SAM header line: @SQ SN:PGA_scaffold67070__1_contigs__length_50493 LN:50493 skipping SAM header line: @SQ SN:PGA_scaffold67071__1_contigs__length_16420 LN:16420 skipping SAM header line: @SQ SN:PGA_scaffold67072__1_contigs__length_16691 LN:16691 skipping SAM header line: @SQ SN:PGA_scaffold67085__1_contigs__length_17777 LN:17777 skipping SAM header line: @SQ SN:PGA_scaffold67086__1_contigs__length_11128 LN:11128 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold67172__1_contigs__length_12451 LN:12451 skipping SAM header line: @SQ SN:PGA_scaffold67183__1_contigs__length_24122 LN:24122 skipping SAM header line: @SQ SN:PGA_scaffold67185__1_contigs__length_13283 LN:13283 skipping SAM header line: @SQ SN:PGA_scaffold67191__1_contigs__length_15279 LN:15279 skipping SAM header line: @SQ SN:PGA_scaffold67195__1_contigs__length_10139 LN:10139 skipping SAM header line: @SQ SN:PGA_scaffold67198__1_contigs__length_19124 LN:19124 skipping SAM header line: @SQ SN:PGA_scaffold67210__1_contigs__length_15043 LN:15043 skipping SAM header line: @SQ SN:PGA_scaffold67214__1_contigs__length_49673 LN:49673 skipping SAM header line: @SQ SN:PGA_scaffold67221__1_contigs__length_11213 LN:11213 skipping SAM header line: @SQ SN:PGA_scaffold67223__1_contigs__length_14100 LN:14100 skipping SAM header line: @SQ SN:PGA_scaffold67236__1_contigs__length_10766 LN:10766 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold67279__1_contigs__length_19060 LN:19060 skipping SAM header line: @SQ SN:PGA_scaffold67280__1_contigs__length_31885 LN:31885 skipping SAM header line: @SQ SN:PGA_scaffold67288__1_contigs__length_10930 LN:10930 skipping SAM header line: @SQ SN:PGA_scaffold67294__1_contigs__length_50832 LN:50832 skipping SAM header line: @SQ SN:PGA_scaffold67297__1_contigs__length_13163 LN:13163 skipping SAM header line: @SQ SN:PGA_scaffold67299__1_contigs__length_10489 LN:10489 skipping SAM header line: @SQ SN:PGA_scaffold67300__1_contigs__length_12435 LN:12435 skipping SAM header line: @SQ SN:PGA_scaffold67301__1_contigs__length_20418 LN:20418 skipping SAM header line: @SQ SN:PGA_scaffold67304__1_contigs__length_16265 LN:16265 skipping SAM header line: @SQ SN:PGA_scaffold67309__1_contigs__length_10261 LN:10261 skipping SAM header line: @SQ SN:PGA_scaffold67310__1_contigs__length_13448 LN:13448 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold67358__1_contigs__length_24187 LN:24187 skipping SAM header line: @SQ SN:PGA_scaffold67362__1_contigs__length_18900 LN:18900 skipping SAM header line: @SQ SN:PGA_scaffold67365__1_contigs__length_13635 LN:13635 skipping SAM header line: @SQ SN:PGA_scaffold67367__1_contigs__length_29955 LN:29955 skipping SAM header line: @SQ SN:PGA_scaffold67370__1_contigs__length_14467 LN:14467 skipping SAM header line: @SQ SN:PGA_scaffold67371__1_contigs__length_25510 LN:25510 skipping SAM header line: @SQ SN:PGA_scaffold67372__1_contigs__length_16525 LN:16525 skipping SAM header line: @SQ SN:PGA_scaffold67373__1_contigs__length_10417 LN:10417 skipping SAM header line: @SQ SN:PGA_scaffold67375__1_contigs__length_26627 LN:26627 skipping SAM header line: @SQ SN:PGA_scaffold67376__1_contigs__length_19930 LN:19930 skipping SAM header line: @SQ SN:PGA_scaffold67377__1_contigs__length_26822 LN:26822 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold67755__1_contigs__length_12072 LN:12072 skipping SAM header line: @SQ SN:PGA_scaffold67764__1_contigs__length_13771 LN:13771 skipping SAM header line: @SQ SN:PGA_scaffold67765__1_contigs__length_24041 LN:24041 skipping SAM header line: @SQ SN:PGA_scaffold67770__1_contigs__length_12629 LN:12629 skipping SAM header line: @SQ SN:PGA_scaffold67774__1_contigs__length_13710 LN:13710 skipping SAM header line: @SQ SN:PGA_scaffold67776__1_contigs__length_13892 LN:13892 skipping SAM header line: @SQ SN:PGA_scaffold67781__1_contigs__length_42225 LN:42225 skipping SAM header line: @SQ SN:PGA_scaffold67782__1_contigs__length_31631 LN:31631 skipping SAM header line: @SQ SN:PGA_scaffold67786__1_contigs__length_18099 LN:18099 skipping SAM header line: @SQ SN:PGA_scaffold67789__1_contigs__length_11921 LN:11921 skipping SAM header line: @SQ SN:PGA_scaffold67791__1_contigs__length_13525 LN:13525 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold67860__1_contigs__length_16757 LN:16757 skipping SAM header line: @SQ SN:PGA_scaffold67868__1_contigs__length_14907 LN:14907 skipping SAM header line: @SQ SN:PGA_scaffold67871__1_contigs__length_10602 LN:10602 skipping SAM header line: @SQ SN:PGA_scaffold67873__1_contigs__length_11169 LN:11169 skipping SAM header line: @SQ SN:PGA_scaffold67874__1_contigs__length_35874 LN:35874 skipping SAM header line: @SQ SN:PGA_scaffold67879__1_contigs__length_11098 LN:11098 skipping SAM header line: @SQ SN:PGA_scaffold67880__1_contigs__length_14775 LN:14775 skipping SAM header line: @SQ SN:PGA_scaffold67886__1_contigs__length_12532 LN:12532 skipping SAM header line: @SQ SN:PGA_scaffold67889__1_contigs__length_14718 LN:14718 skipping SAM header line: @SQ SN:PGA_scaffold67890__1_contigs__length_25388 LN:25388 skipping SAM header line: @SQ SN:PGA_scaffold67896__1_contigs__length_16291 LN:16291 skipping SAM header line: @SQ SN:PGA_scaffold67897__1_contigs__length_18920 LN:18920 skipping SAM header line: @SQ SN:PGA_scaffold67898__1_contigs__length_13755 LN:13755 skipping SAM header line: @SQ SN:PGA_scaffold67907__1_contigs__length_12591 LN:12591 skipping SAM header line: @SQ SN:PGA_scaffold67908__1_contigs__length_39573 LN:39573 skipping SAM header line: @SQ SN:PGA_scaffold67909__1_contigs__length_30059 LN:30059 skipping SAM header line: @SQ SN:PGA_scaffold67910__1_contigs__length_12888 LN:12888 skipping SAM header line: @SQ SN:PGA_scaffold67920__1_contigs__length_18362 LN:18362 skipping SAM header line: @SQ SN:PGA_scaffold67921__1_contigs__length_42945 LN:42945 skipping SAM header line: @SQ SN:PGA_scaffold67929__1_contigs__length_21958 LN:21958 skipping SAM header line: @SQ SN:PGA_scaffold67932__1_contigs__length_11255 LN:11255 skipping SAM header line: @SQ SN:PGA_scaffold67933__1_contigs__length_18370 LN:18370 skipping SAM header line: @SQ SN:PGA_scaffold67942__1_contigs__length_32835 LN:32835 skipping SAM header line: @SQ SN:PGA_scaffold67945__1_contigs__length_10415 LN:10415 skipping SAM header line: @SQ SN:PGA_scaffold67946__1_contigs__length_11194 LN:11194 skipping SAM header line: @SQ SN:PGA_scaffold67949__1_contigs__length_10236 LN:10236 skipping SAM header line: @SQ SN:PGA_scaffold67958__1_contigs__length_11185 LN:11185 skipping SAM header line: @SQ SN:PGA_scaffold67959__1_contigs__length_22360 LN:22360 skipping SAM header line: @SQ SN:PGA_scaffold67966__1_contigs__length_24683 LN:24683 skipping SAM header line: @SQ SN:PGA_scaffold67967__1_contigs__length_40481 LN:40481 skipping SAM header line: @SQ SN:PGA_scaffold67969__1_contigs__length_13456 LN:13456 skipping SAM header line: @SQ SN:PGA_scaffold67977__1_contigs__length_17117 LN:17117 skipping SAM header line: @SQ SN:PGA_scaffold67978__1_contigs__length_28202 LN:28202 skipping SAM header line: @SQ SN:PGA_scaffold67981__1_contigs__length_35686 LN:35686 skipping SAM header line: @SQ SN:PGA_scaffold67988__1_contigs__length_28615 LN:28615 skipping SAM header line: @SQ SN:PGA_scaffold67989__1_contigs__length_15060 LN:15060 skipping SAM header line: @SQ SN:PGA_scaffold67990__1_contigs__length_16565 LN:16565 skipping SAM header line: @SQ SN:PGA_scaffold67994__1_contigs__length_13600 LN:13600 skipping SAM header line: @SQ SN:PGA_scaffold68003__1_contigs__length_23994 LN:23994 skipping SAM header line: @SQ SN:PGA_scaffold68006__1_contigs__length_12382 LN:12382 skipping SAM header line: @SQ SN:PGA_scaffold68016__1_contigs__length_15504 LN:15504 skipping SAM header line: @SQ SN:PGA_scaffold68017__1_contigs__length_10539 LN:10539 skipping SAM header line: @SQ SN:PGA_scaffold68020__1_contigs__length_14963 LN:14963 skipping SAM header line: @SQ SN:PGA_scaffold68024__1_contigs__length_21067 LN:21067 skipping SAM header line: @SQ SN:PGA_scaffold68033__1_contigs__length_23910 LN:23910 skipping SAM header line: @SQ SN:PGA_scaffold68035__1_contigs__length_42103 LN:42103 skipping SAM header line: @SQ SN:PGA_scaffold68039__1_contigs__length_32241 LN:32241 skipping SAM header line: @SQ SN:PGA_scaffold68042__1_contigs__length_43179 LN:43179 skipping SAM header line: @SQ SN:PGA_scaffold68043__1_contigs__length_10356 LN:10356 skipping SAM header line: @SQ SN:PGA_scaffold68044__1_contigs__length_31992 LN:31992 skipping SAM header line: @SQ SN:PGA_scaffold68045__1_contigs__length_16334 LN:16334 skipping SAM header line: @SQ SN:PGA_scaffold68049__1_contigs__length_34344 LN:34344 skipping SAM header line: @SQ SN:PGA_scaffold68053__1_contigs__length_31000 LN:31000 skipping SAM header line: @SQ SN:PGA_scaffold68054__1_contigs__length_26015 LN:26015 skipping SAM header line: @SQ SN:PGA_scaffold68058__1_contigs__length_13335 LN:13335 skipping SAM header line: @SQ SN:PGA_scaffold68059__1_contigs__length_11745 LN:11745 skipping SAM header line: @SQ SN:PGA_scaffold68067__1_contigs__length_12148 LN:12148 skipping SAM header line: @SQ SN:PGA_scaffold68069__1_contigs__length_10546 LN:10546 skipping SAM header line: @SQ SN:PGA_scaffold68071__1_contigs__length_10712 LN:10712 skipping SAM header line: @SQ SN:PGA_scaffold68075__1_contigs__length_25456 LN:25456 skipping SAM header line: @SQ SN:PGA_scaffold68077__1_contigs__length_14893 LN:14893 skipping SAM header line: @SQ SN:PGA_scaffold68092__1_contigs__length_33414 LN:33414 skipping SAM header line: @SQ SN:PGA_scaffold68094__1_contigs__length_26524 LN:26524 skipping SAM header line: @SQ SN:PGA_scaffold68099__1_contigs__length_15938 LN:15938 skipping SAM header line: @SQ SN:PGA_scaffold68100__1_contigs__length_14992 LN:14992 skipping SAM header line: @SQ SN:PGA_scaffold68102__1_contigs__length_15080 LN:15080 skipping SAM header line: @SQ SN:PGA_scaffold68106__1_contigs__length_11446 LN:11446 skipping SAM header line: @SQ SN:PGA_scaffold68108__1_contigs__length_11156 LN:11156 skipping SAM header line: @SQ SN:PGA_scaffold68116__1_contigs__length_17061 LN:17061 skipping SAM header line: @SQ SN:PGA_scaffold68118__1_contigs__length_11257 LN:11257 skipping SAM header line: @SQ SN:PGA_scaffold68130__1_contigs__length_14165 LN:14165 skipping SAM header line: @SQ SN:PGA_scaffold68142__1_contigs__length_10694 LN:10694 skipping SAM header line: @SQ SN:PGA_scaffold68150__1_contigs__length_50783 LN:50783 skipping SAM header line: @SQ SN:PGA_scaffold68157__1_contigs__length_34106 LN:34106 skipping SAM header line: @SQ SN:PGA_scaffold68161__1_contigs__length_17929 LN:17929 skipping SAM header line: @SQ SN:PGA_scaffold68164__1_contigs__length_14483 LN:14483 skipping SAM header line: @SQ SN:PGA_scaffold68170__1_contigs__length_15919 LN:15919 skipping SAM header line: @SQ SN:PGA_scaffold68173__1_contigs__length_11823 LN:11823 skipping SAM header line: @SQ SN:PGA_scaffold68183__1_contigs__length_13945 LN:13945 skipping SAM header line: @SQ SN:PGA_scaffold68184__1_contigs__length_41355 LN:41355 skipping SAM header line: @SQ SN:PGA_scaffold68192__1_contigs__length_14261 LN:14261 skipping SAM header line: @SQ SN:PGA_scaffold68193__1_contigs__length_46031 LN:46031 skipping SAM header line: @SQ SN:PGA_scaffold68195__1_contigs__length_13592 LN:13592 skipping SAM header line: @SQ SN:PGA_scaffold68203__1_contigs__length_16469 LN:16469 skipping SAM header line: @SQ SN:PGA_scaffold68204__1_contigs__length_21746 LN:21746 skipping SAM header line: @SQ SN:PGA_scaffold68205__1_contigs__length_30954 LN:30954 skipping SAM header line: @SQ SN:PGA_scaffold68209__1_contigs__length_24164 LN:24164 skipping SAM header line: @SQ SN:PGA_scaffold68216__1_contigs__length_14378 LN:14378 skipping SAM header line: @SQ SN:PGA_scaffold68218__1_contigs__length_13758 LN:13758 skipping SAM header line: @SQ SN:PGA_scaffold68222__1_contigs__length_15256 LN:15256 skipping SAM header line: @SQ SN:PGA_scaffold68225__1_contigs__length_13708 LN:13708 skipping SAM header line: @SQ SN:PGA_scaffold68226__1_contigs__length_11508 LN:11508 skipping SAM header line: @SQ SN:PGA_scaffold68228__1_contigs__length_14315 LN:14315 skipping SAM header line: @SQ SN:PGA_scaffold68230__1_contigs__length_15785 LN:15785 skipping SAM header line: @SQ SN:PGA_scaffold68236__1_contigs__length_13511 LN:13511 skipping SAM header line: @SQ SN:PGA_scaffold68241__1_contigs__length_16089 LN:16089 skipping SAM header line: @SQ SN:PGA_scaffold68242__1_contigs__length_10917 LN:10917 skipping SAM header line: @SQ SN:PGA_scaffold68244__1_contigs__length_14615 LN:14615 skipping SAM header line: @SQ SN:PGA_scaffold68248__1_contigs__length_24375 LN:24375 skipping SAM header line: @SQ SN:PGA_scaffold68249__1_contigs__length_12412 LN:12412 skipping SAM header line: @SQ SN:PGA_scaffold68252__1_contigs__length_37078 LN:37078 skipping SAM header line: @SQ SN:PGA_scaffold68255__1_contigs__length_15376 LN:15376 skipping SAM header line: @SQ SN:PGA_scaffold68256__1_contigs__length_18476 LN:18476 skipping SAM header line: @SQ SN:PGA_scaffold68257__1_contigs__length_10345 LN:10345 skipping SAM header line: @SQ SN:PGA_scaffold68258__1_contigs__length_12562 LN:12562 skipping SAM header line: @SQ SN:PGA_scaffold68259__1_contigs__length_17293 LN:17293 skipping SAM header line: @SQ SN:PGA_scaffold68260__1_contigs__length_12171 LN:12171 skipping SAM header line: @SQ SN:PGA_scaffold68262__1_contigs__length_14225 LN:14225 skipping SAM header line: @SQ SN:PGA_scaffold68268__1_contigs__length_17878 LN:17878 skipping SAM header line: @SQ SN:PGA_scaffold68272__1_contigs__length_21275 LN:21275 skipping SAM header line: @SQ SN:PGA_scaffold68273__1_contigs__length_46075 LN:46075 skipping SAM header line: @SQ SN:PGA_scaffold68274__1_contigs__length_63866 LN:63866 skipping SAM header line: @SQ SN:PGA_scaffold68275__1_contigs__length_20919 LN:20919 skipping SAM header line: @SQ SN:PGA_scaffold68283__1_contigs__length_24754 LN:24754 skipping SAM header line: @SQ SN:PGA_scaffold68284__1_contigs__length_23423 LN:23423 skipping SAM header line: @SQ SN:PGA_scaffold68295__1_contigs__length_23211 LN:23211 skipping SAM header line: @SQ SN:PGA_scaffold68298__1_contigs__length_11817 LN:11817 skipping SAM header line: @SQ SN:PGA_scaffold68304__1_contigs__length_19247 LN:19247 skipping SAM header line: @SQ SN:PGA_scaffold68307__1_contigs__length_14020 LN:14020 skipping SAM header line: @SQ SN:PGA_scaffold68308__1_contigs__length_10949 LN:10949 skipping SAM header line: @SQ SN:PGA_scaffold68309__1_contigs__length_11409 LN:11409 skipping SAM header line: @SQ SN:PGA_scaffold68310__1_contigs__length_23726 LN:23726 skipping SAM header line: @SQ SN:PGA_scaffold68315__1_contigs__length_18512 LN:18512 skipping SAM header line: @SQ SN:PGA_scaffold68318__1_contigs__length_17350 LN:17350 skipping SAM header line: @SQ SN:PGA_scaffold68323__1_contigs__length_27871 LN:27871 skipping SAM header line: @SQ SN:PGA_scaffold68324__1_contigs__length_25140 LN:25140 skipping SAM header line: @SQ SN:PGA_scaffold68332__1_contigs__length_52891 LN:52891 skipping SAM header line: @SQ SN:PGA_scaffold68335__1_contigs__length_15593 LN:15593 skipping SAM header line: @SQ SN:PGA_scaffold68336__1_contigs__length_23224 LN:23224 skipping SAM header line: @SQ SN:PGA_scaffold68338__1_contigs__length_13806 LN:13806 skipping SAM header line: @SQ SN:PGA_scaffold68342__1_contigs__length_22793 LN:22793 skipping SAM header line: @SQ SN:PGA_scaffold68343__1_contigs__length_14172 LN:14172 skipping SAM header line: @SQ SN:PGA_scaffold68344__1_contigs__length_21157 LN:21157 skipping SAM header line: @SQ SN:PGA_scaffold68347__1_contigs__length_10227 LN:10227 skipping SAM header line: @SQ SN:PGA_scaffold68349__1_contigs__length_27523 LN:27523 skipping SAM header line: @SQ SN:PGA_scaffold68355__1_contigs__length_44244 LN:44244 skipping SAM header line: @SQ SN:PGA_scaffold68357__1_contigs__length_26793 LN:26793 skipping SAM header line: @SQ SN:PGA_scaffold68358__1_contigs__length_25963 LN:25963 skipping SAM header line: @SQ SN:PGA_scaffold68363__1_contigs__length_11934 LN:11934 skipping SAM header line: @SQ SN:PGA_scaffold68364__1_contigs__length_27979 LN:27979 skipping SAM header line: @SQ SN:PGA_scaffold68372__1_contigs__length_24098 LN:24098 skipping SAM header line: @SQ SN:PGA_scaffold68373__1_contigs__length_13660 LN:13660 skipping SAM header line: @SQ SN:PGA_scaffold68378__1_contigs__length_16676 LN:16676 skipping SAM header line: @SQ SN:PGA_scaffold68382__1_contigs__length_35256 LN:35256 skipping SAM header line: @SQ SN:PGA_scaffold68384__1_contigs__length_17504 LN:17504 skipping SAM header line: @SQ SN:PGA_scaffold68386__1_contigs__length_28921 LN:28921 skipping SAM header line: @SQ SN:PGA_scaffold68387__1_contigs__length_39768 LN:39768 skipping SAM header line: @SQ SN:PGA_scaffold68394__1_contigs__length_31191 LN:31191 skipping SAM header line: @SQ SN:PGA_scaffold68395__1_contigs__length_45596 LN:45596 skipping SAM header line: @SQ SN:PGA_scaffold68397__1_contigs__length_46584 LN:46584 skipping SAM header line: @SQ SN:PGA_scaffold68399__1_contigs__length_12387 LN:12387 skipping SAM header line: @SQ SN:PGA_scaffold68403__1_contigs__length_10614 LN:10614 skipping SAM header line: @SQ SN:PGA_scaffold68406__1_contigs__length_23078 LN:23078 skipping SAM header line: @SQ SN:PGA_scaffold68410__1_contigs__length_13547 LN:13547 skipping SAM header line: @SQ SN:PGA_scaffold68411__1_contigs__length_26528 LN:26528 skipping SAM header line: @SQ SN:PGA_scaffold68413__1_contigs__length_11384 LN:11384 skipping SAM header line: @SQ SN:PGA_scaffold68419__1_contigs__length_27677 LN:27677 skipping SAM header line: @SQ SN:PGA_scaffold68425__1_contigs__length_32148 LN:32148 skipping SAM header line: @SQ SN:PGA_scaffold68426__1_contigs__length_11324 LN:11324 skipping SAM header line: @SQ SN:PGA_scaffold68430__1_contigs__length_21994 LN:21994 skipping SAM header line: @SQ SN:PGA_scaffold68431__1_contigs__length_13242 LN:13242 skipping SAM header line: @SQ SN:PGA_scaffold68437__1_contigs__length_19513 LN:19513 skipping SAM header line: @SQ SN:PGA_scaffold68438__1_contigs__length_17421 LN:17421 skipping SAM header line: @SQ SN:PGA_scaffold68439__1_contigs__length_18726 LN:18726 skipping SAM header line: @SQ SN:PGA_scaffold68446__1_contigs__length_20675 LN:20675 skipping SAM header line: @SQ SN:PGA_scaffold68448__1_contigs__length_13184 LN:13184 skipping SAM header line: @SQ SN:PGA_scaffold68449__1_contigs__length_27960 LN:27960 skipping SAM header line: @SQ SN:PGA_scaffold68451__1_contigs__length_19257 LN:19257 skipping SAM header line: @SQ SN:PGA_scaffold68453__1_contigs__length_19385 LN:19385 skipping SAM header line: @SQ SN:PGA_scaffold68455__1_contigs__length_49171 LN:49171 skipping SAM header line: @SQ SN:PGA_scaffold68456__1_contigs__length_10918 LN:10918 skipping SAM header line: @SQ SN:PGA_scaffold68463__1_contigs__length_36019 LN:36019 skipping SAM header line: @SQ SN:PGA_scaffold68476__1_contigs__length_31493 LN:31493 skipping SAM header line: @SQ SN:PGA_scaffold68482__1_contigs__length_22161 LN:22161 skipping SAM header line: @SQ SN:PGA_scaffold68483__1_contigs__length_57370 LN:57370 skipping SAM header line: @SQ SN:PGA_scaffold68484__1_contigs__length_47467 LN:47467 skipping SAM header line: @SQ SN:PGA_scaffold68493__1_contigs__length_15288 LN:15288 skipping SAM header line: @SQ SN:PGA_scaffold68495__1_contigs__length_36431 LN:36431 skipping SAM header line: @SQ SN:PGA_scaffold68498__1_contigs__length_33054 LN:33054 skipping SAM header line: @SQ SN:PGA_scaffold68505__1_contigs__length_17828 LN:17828 skipping SAM header line: @SQ SN:PGA_scaffold68521__1_contigs__length_17029 LN:17029 skipping SAM header line: @SQ SN:PGA_scaffold68522__1_contigs__length_26059 LN:26059 skipping SAM header line: @SQ SN:PGA_scaffold68526__1_contigs__length_11574 LN:11574 skipping SAM header line: @SQ SN:PGA_scaffold68529__1_contigs__length_45929 LN:45929 skipping SAM header line: @SQ SN:PGA_scaffold68530__1_contigs__length_16508 LN:16508 skipping SAM header line: @SQ SN:PGA_scaffold68536__1_contigs__length_53547 LN:53547 skipping SAM header line: @SQ SN:PGA_scaffold68538__1_contigs__length_10996 LN:10996 skipping SAM header line: @SQ SN:PGA_scaffold68540__1_contigs__length_29479 LN:29479 skipping SAM header line: @SQ SN:PGA_scaffold68551__1_contigs__length_29418 LN:29418 skipping SAM header line: @SQ SN:PGA_scaffold68553__1_contigs__length_19746 LN:19746 skipping SAM header line: @SQ SN:PGA_scaffold68554__1_contigs__length_10791 LN:10791 skipping SAM header line: @SQ SN:PGA_scaffold68560__1_contigs__length_10489 LN:10489 skipping SAM header line: @SQ SN:PGA_scaffold68562__1_contigs__length_12936 LN:12936 skipping SAM header line: @SQ SN:PGA_scaffold68563__1_contigs__length_17568 LN:17568 skipping SAM header line: @SQ SN:PGA_scaffold68566__1_contigs__length_11461 LN:11461 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68615__1_contigs__length_21221 LN:21221 skipping SAM header line: @SQ SN:PGA_scaffold68617__1_contigs__length_13064 LN:13064 skipping SAM header line: @SQ SN:PGA_scaffold68621__1_contigs__length_21512 LN:21512 skipping SAM header line: @SQ SN:PGA_scaffold68622__1_contigs__length_15036 LN:15036 skipping SAM header line: @SQ SN:PGA_scaffold68624__1_contigs__length_11404 LN:11404 skipping SAM header line: @SQ SN:PGA_scaffold68629__1_contigs__length_11577 LN:11577 skipping SAM header line: @SQ SN:PGA_scaffold68630__1_contigs__length_13128 LN:13128 skipping SAM header line: @SQ SN:PGA_scaffold68633__1_contigs__length_12703 LN:12703 skipping SAM header line: @SQ SN:PGA_scaffold68638__1_contigs__length_15517 LN:15517 skipping SAM header line: @SQ SN:PGA_scaffold68640__1_contigs__length_14565 LN:14565 skipping SAM header line: @SQ SN:PGA_scaffold68641__1_contigs__length_13979 LN:13979 skipping SAM header line: @SQ SN:PGA_scaffold68644__1_contigs__length_18993 LN:18993 skipping SAM header line: @SQ SN:PGA_scaffold68648__1_contigs__length_23365 LN:23365 skipping SAM header line: @SQ SN:PGA_scaffold68649__1_contigs__length_16084 LN:16084 skipping SAM header line: @SQ SN:PGA_scaffold68652__1_contigs__length_12858 LN:12858 skipping SAM header line: @SQ SN:PGA_scaffold68653__1_contigs__length_24769 LN:24769 skipping SAM header line: @SQ SN:PGA_scaffold68656__1_contigs__length_17609 LN:17609 skipping SAM header line: @SQ SN:PGA_scaffold68662__1_contigs__length_16689 LN:16689 skipping SAM header line: @SQ SN:PGA_scaffold68667__1_contigs__length_11331 LN:11331 skipping SAM header line: @SQ SN:PGA_scaffold68671__1_contigs__length_10790 LN:10790 skipping SAM header line: @SQ SN:PGA_scaffold68674__1_contigs__length_32423 LN:32423 skipping SAM header line: @SQ SN:PGA_scaffold68692__1_contigs__length_18638 LN:18638 skipping SAM header line: @SQ SN:PGA_scaffold68699__1_contigs__length_27193 LN:27193 skipping SAM header line: @SQ SN:PGA_scaffold68703__1_contigs__length_10874 LN:10874 skipping SAM header line: @SQ SN:PGA_scaffold68709__1_contigs__length_19220 LN:19220 skipping SAM header line: @SQ SN:PGA_scaffold68712__1_contigs__length_23661 LN:23661 skipping SAM header line: @SQ SN:PGA_scaffold68718__1_contigs__length_16337 LN:16337 skipping SAM header line: @SQ SN:PGA_scaffold68721__1_contigs__length_42259 LN:42259 skipping SAM header line: @SQ SN:PGA_scaffold68722__1_contigs__length_12693 LN:12693 skipping SAM header line: @SQ SN:PGA_scaffold68727__1_contigs__length_17803 LN:17803 skipping SAM header line: @SQ SN:PGA_scaffold68730__1_contigs__length_14814 LN:14814 skipping SAM header line: @SQ SN:PGA_scaffold68732__1_contigs__length_19156 LN:19156 skipping SAM header line: @SQ SN:PGA_scaffold68735__1_contigs__length_10723 LN:10723 skipping SAM header line: @SQ SN:PGA_scaffold68743__1_contigs__length_13476 LN:13476 skipping SAM header line: @SQ SN:PGA_scaffold68746__1_contigs__length_17525 LN:17525 skipping SAM header line: @SQ SN:PGA_scaffold68747__1_contigs__length_49906 LN:49906 skipping SAM header line: @SQ SN:PGA_scaffold68755__1_contigs__length_16371 LN:16371 skipping SAM header line: @SQ SN:PGA_scaffold68761__1_contigs__length_14386 LN:14386 skipping SAM header line: @SQ SN:PGA_scaffold68765__1_contigs__length_40132 LN:40132 skipping SAM header line: @SQ SN:PGA_scaffold68775__1_contigs__length_10887 LN:10887 skipping SAM header line: @SQ SN:PGA_scaffold68776__1_contigs__length_29954 LN:29954 skipping SAM header line: @SQ SN:PGA_scaffold68777__1_contigs__length_38286 LN:38286 skipping SAM header line: @SQ SN:PGA_scaffold68778__1_contigs__length_27771 LN:27771 skipping SAM header line: @SQ SN:PGA_scaffold68780__1_contigs__length_20441 LN:20441 skipping SAM header line: @SQ SN:PGA_scaffold68784__1_contigs__length_10142 LN:10142 skipping SAM header line: @SQ SN:PGA_scaffold68785__1_contigs__length_11241 LN:11241 skipping SAM header line: @SQ SN:PGA_scaffold68791__1_contigs__length_15091 LN:15091 skipping SAM header line: @SQ SN:PGA_scaffold68792__1_contigs__length_13138 LN:13138 skipping SAM header line: @SQ SN:PGA_scaffold68793__1_contigs__length_10770 LN:10770 skipping SAM header line: @SQ SN:PGA_scaffold68794__1_contigs__length_10773 LN:10773 skipping SAM header line: @SQ SN:PGA_scaffold68795__1_contigs__length_49952 LN:49952 skipping SAM header line: @SQ SN:PGA_scaffold68798__1_contigs__length_41851 LN:41851 skipping SAM header line: @SQ SN:PGA_scaffold68800__1_contigs__length_13282 LN:13282 skipping SAM header line: @SQ SN:PGA_scaffold68806__1_contigs__length_11036 LN:11036 skipping SAM header line: @SQ SN:PGA_scaffold68808__1_contigs__length_18107 LN:18107 skipping SAM header line: @SQ SN:PGA_scaffold68809__1_contigs__length_12337 LN:12337 skipping SAM header line: @SQ SN:PGA_scaffold68810__1_contigs__length_11509 LN:11509 skipping SAM header line: @SQ SN:PGA_scaffold68816__1_contigs__length_39953 LN:39953 skipping SAM header line: @SQ SN:PGA_scaffold68822__1_contigs__length_40525 LN:40525 skipping SAM header line: @SQ SN:PGA_scaffold68825__1_contigs__length_21306 LN:21306 skipping SAM header line: @SQ SN:PGA_scaffold68831__1_contigs__length_15615 LN:15615 skipping SAM header line: @SQ SN:PGA_scaffold68833__1_contigs__length_12040 LN:12040 skipping SAM header line: @SQ SN:PGA_scaffold68837__1_contigs__length_13213 LN:13213 skipping SAM header line: @SQ SN:PGA_scaffold68844__1_contigs__length_19621 LN:19621 skipping SAM header line: @SQ SN:PGA_scaffold68845__1_contigs__length_27874 LN:27874 skipping SAM header line: @SQ SN:PGA_scaffold68849__1_contigs__length_42390 LN:42390 skipping SAM header line: @SQ SN:PGA_scaffold68855__1_contigs__length_38462 LN:38462 skipping SAM header line: @SQ SN:PGA_scaffold68858__1_contigs__length_37103 LN:37103 skipping SAM header line: @SQ SN:PGA_scaffold68862__1_contigs__length_25180 LN:25180 skipping SAM header line: @SQ SN:PGA_scaffold68866__1_contigs__length_15500 LN:15500 skipping SAM header line: @SQ SN:PGA_scaffold68867__1_contigs__length_29477 LN:29477 skipping SAM header line: @SQ SN:PGA_scaffold68876__1_contigs__length_15966 LN:15966 skipping SAM header line: @SQ SN:PGA_scaffold68878__1_contigs__length_23378 LN:23378 skipping SAM header line: @SQ SN:PGA_scaffold68883__1_contigs__length_12697 LN:12697 skipping SAM header line: @SQ SN:PGA_scaffold68888__1_contigs__length_30760 LN:30760 skipping SAM header line: @SQ SN:PGA_scaffold68892__1_contigs__length_14674 LN:14674 skipping SAM header line: @SQ SN:PGA_scaffold68894__1_contigs__length_27050 LN:27050 skipping SAM header line: @SQ SN:PGA_scaffold68896__1_contigs__length_11915 LN:11915 skipping SAM header line: @SQ SN:PGA_scaffold68902__1_contigs__length_32565 LN:32565 skipping SAM header line: @SQ SN:PGA_scaffold68903__1_contigs__length_10723 LN:10723 skipping SAM header line: @SQ SN:PGA_scaffold68908__1_contigs__length_11088 LN:11088 skipping SAM header line: @SQ SN:PGA_scaffold68911__1_contigs__length_27994 LN:27994 skipping SAM header line: @SQ SN:PGA_scaffold68912__1_contigs__length_20892 LN:20892 skipping SAM header line: @SQ SN:PGA_scaffold68913__1_contigs__length_19901 LN:19901 skipping SAM header line: @SQ SN:PGA_scaffold68916__1_contigs__length_32130 LN:32130 skipping SAM header line: @SQ SN:PGA_scaffold68930__1_contigs__length_20375 LN:20375 skipping SAM header line: @SQ SN:PGA_scaffold68932__1_contigs__length_23589 LN:23589 skipping SAM header line: @SQ SN:PGA_scaffold68933__1_contigs__length_15943 LN:15943 skipping SAM header line: @SQ SN:PGA_scaffold68938__1_contigs__length_15636 LN:15636 skipping SAM header line: @SQ SN:PGA_scaffold68939__1_contigs__length_20900 LN:20900 skipping SAM header line: @SQ SN:PGA_scaffold68942__1_contigs__length_12458 LN:12458 skipping SAM header line: @SQ SN:PGA_scaffold68943__1_contigs__length_27006 LN:27006 skipping SAM header line: @SQ SN:PGA_scaffold68944__1_contigs__length_26741 LN:26741 skipping SAM header line: @SQ SN:PGA_scaffold68947__1_contigs__length_10936 LN:10936 skipping SAM header line: @SQ SN:PGA_scaffold68948__1_contigs__length_15370 LN:15370 skipping SAM header line: @SQ SN:PGA_scaffold68952__1_contigs__length_14184 LN:14184 skipping SAM header line: @SQ SN:PGA_scaffold68953__1_contigs__length_10104 LN:10104 skipping SAM header line: @SQ SN:PGA_scaffold68959__1_contigs__length_34473 LN:34473 skipping SAM header line: @SQ SN:PGA_scaffold68960__1_contigs__length_13429 LN:13429 skipping SAM header line: @SQ SN:PGA_scaffold68965__1_contigs__length_12251 LN:12251 skipping SAM header line: @SQ SN:PGA_scaffold68968__1_contigs__length_28899 LN:28899 skipping SAM header line: @SQ SN:PGA_scaffold68971__1_contigs__length_11381 LN:11381 skipping SAM header line: @SQ SN:PGA_scaffold68980__1_contigs__length_31650 LN:31650 skipping SAM header line: @SQ SN:PGA_scaffold68985__1_contigs__length_20802 LN:20802 skipping SAM header line: @SQ SN:PGA_scaffold68990__1_contigs__length_11133 LN:11133 skipping SAM header line: @SQ SN:PGA_scaffold68999__1_contigs__length_16157 LN:16157 skipping SAM header line: @SQ SN:PGA_scaffold69000__1_contigs__length_31325 LN:31325 skipping SAM header line: @SQ SN:PGA_scaffold69010__1_contigs__length_15310 LN:15310 skipping SAM header line: @SQ SN:PGA_scaffold69018__1_contigs__length_16967 LN:16967 skipping SAM header line: @SQ SN:PGA_scaffold69025__1_contigs__length_21443 LN:21443 skipping SAM header line: @SQ SN:PGA_scaffold69031__1_contigs__length_49096 LN:49096 skipping SAM header line: @SQ SN:PGA_scaffold69036__1_contigs__length_10931 LN:10931 skipping SAM header line: @SQ SN:PGA_scaffold69039__1_contigs__length_29725 LN:29725 skipping SAM header line: @SQ SN:PGA_scaffold69046__1_contigs__length_29699 LN:29699 skipping SAM header line: @SQ SN:PGA_scaffold69048__1_contigs__length_14639 LN:14639 skipping SAM header line: @SQ SN:PGA_scaffold69053__1_contigs__length_10018 LN:10018 skipping SAM header line: @SQ SN:PGA_scaffold69056__1_contigs__length_16920 LN:16920 skipping SAM header line: @SQ SN:PGA_scaffold69057__1_contigs__length_12123 LN:12123 skipping SAM header line: @SQ SN:PGA_scaffold69064__1_contigs__length_30263 LN:30263 skipping SAM header line: @SQ SN:PGA_scaffold69066__1_contigs__length_41967 LN:41967 skipping SAM header line: @SQ SN:PGA_scaffold69069__1_contigs__length_13884 LN:13884 skipping SAM header line: @SQ SN:PGA_scaffold69070__1_contigs__length_19954 LN:19954 skipping SAM header line: @SQ SN:PGA_scaffold69072__1_contigs__length_16501 LN:16501 skipping SAM header line: @SQ SN:PGA_scaffold69075__1_contigs__length_43631 LN:43631 skipping SAM header line: @SQ SN:PGA_scaffold69079__1_contigs__length_20109 LN:20109 skipping SAM header line: @SQ SN:PGA_scaffold69080__1_contigs__length_16471 LN:16471 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69123__1_contigs__length_14399 LN:14399 skipping SAM header line: @SQ SN:PGA_scaffold69124__1_contigs__length_17133 LN:17133 skipping SAM header line: @SQ SN:PGA_scaffold69130__1_contigs__length_52115 LN:52115 skipping SAM header line: @SQ SN:PGA_scaffold69131__1_contigs__length_10220 LN:10220 skipping SAM header line: @SQ SN:PGA_scaffold69135__1_contigs__length_13963 LN:13963 skipping SAM header line: @SQ SN:PGA_scaffold69149__1_contigs__length_34885 LN:34885 skipping SAM header line: @SQ SN:PGA_scaffold69151__1_contigs__length_14202 LN:14202 skipping SAM header line: @SQ SN:PGA_scaffold69158__1_contigs__length_10389 LN:10389 skipping SAM header line: @SQ SN:PGA_scaffold69167__1_contigs__length_14893 LN:14893 skipping SAM header line: @SQ SN:PGA_scaffold69172__1_contigs__length_18479 LN:18479 skipping SAM header line: @SQ SN:PGA_scaffold69173__1_contigs__length_31383 LN:31383 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69232__1_contigs__length_20771 LN:20771 skipping SAM header line: @SQ SN:PGA_scaffold69243__1_contigs__length_23878 LN:23878 skipping SAM header line: @SQ SN:PGA_scaffold69247__1_contigs__length_16374 LN:16374 skipping SAM header line: @SQ SN:PGA_scaffold69248__1_contigs__length_21363 LN:21363 skipping SAM header line: @SQ SN:PGA_scaffold69250__1_contigs__length_10644 LN:10644 skipping SAM header line: @SQ SN:PGA_scaffold69251__1_contigs__length_36385 LN:36385 skipping SAM header line: @SQ SN:PGA_scaffold69257__1_contigs__length_18568 LN:18568 skipping SAM header line: @SQ SN:PGA_scaffold69261__1_contigs__length_14940 LN:14940 skipping SAM header line: @SQ SN:PGA_scaffold69266__1_contigs__length_10298 LN:10298 skipping SAM header line: @SQ SN:PGA_scaffold69267__1_contigs__length_11036 LN:11036 skipping SAM header line: @SQ SN:PGA_scaffold69269__1_contigs__length_13780 LN:13780 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69310__1_contigs__length_18259 LN:18259 skipping SAM header line: @SQ SN:PGA_scaffold69311__1_contigs__length_34239 LN:34239 skipping SAM header line: @SQ SN:PGA_scaffold69315__1_contigs__length_15505 LN:15505 skipping SAM header line: @SQ SN:PGA_scaffold69316__1_contigs__length_24525 LN:24525 skipping SAM header line: @SQ SN:PGA_scaffold69318__1_contigs__length_21365 LN:21365 skipping SAM header line: @SQ SN:PGA_scaffold69324__1_contigs__length_11098 LN:11098 skipping SAM header line: @SQ SN:PGA_scaffold69328__1_contigs__length_11025 LN:11025 skipping SAM header line: @SQ SN:PGA_scaffold69331__1_contigs__length_19825 LN:19825 skipping SAM header line: @SQ SN:PGA_scaffold69332__1_contigs__length_37657 LN:37657 skipping SAM header line: @SQ SN:PGA_scaffold69349__1_contigs__length_22993 LN:22993 skipping SAM header line: @SQ SN:PGA_scaffold69350__1_contigs__length_15623 LN:15623 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69389__1_contigs__length_14229 LN:14229 skipping SAM header line: @SQ SN:PGA_scaffold69391__1_contigs__length_16756 LN:16756 skipping SAM header line: @SQ SN:PGA_scaffold69398__1_contigs__length_16206 LN:16206 skipping SAM header line: @SQ SN:PGA_scaffold69400__1_contigs__length_10590 LN:10590 skipping SAM header line: @SQ SN:PGA_scaffold69413__1_contigs__length_13517 LN:13517 skipping SAM header line: @SQ SN:PGA_scaffold69421__1_contigs__length_16159 LN:16159 skipping SAM header line: @SQ SN:PGA_scaffold69423__1_contigs__length_13062 LN:13062 skipping SAM header line: @SQ SN:PGA_scaffold69425__1_contigs__length_18197 LN:18197 skipping SAM header line: @SQ SN:PGA_scaffold69426__1_contigs__length_26712 LN:26712 skipping SAM header line: @SQ SN:PGA_scaffold69431__1_contigs__length_16899 LN:16899 skipping SAM header line: @SQ SN:PGA_scaffold69432__1_contigs__length_26198 LN:26198 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69477__1_contigs__length_38210 LN:38210 skipping SAM header line: @SQ SN:PGA_scaffold69479__1_contigs__length_32808 LN:32808 skipping SAM header line: @SQ SN:PGA_scaffold69481__1_contigs__length_13516 LN:13516 skipping SAM header line: @SQ SN:PGA_scaffold69483__1_contigs__length_14865 LN:14865 skipping SAM header line: @SQ SN:PGA_scaffold69484__1_contigs__length_31150 LN:31150 skipping SAM header line: @SQ SN:PGA_scaffold69487__1_contigs__length_12051 LN:12051 skipping SAM header line: @SQ SN:PGA_scaffold69495__1_contigs__length_53052 LN:53052 skipping SAM header line: @SQ SN:PGA_scaffold69498__1_contigs__length_21816 LN:21816 skipping SAM header line: @SQ SN:PGA_scaffold69504__1_contigs__length_14333 LN:14333 skipping SAM header line: @SQ SN:PGA_scaffold69509__1_contigs__length_10908 LN:10908 skipping SAM header line: @SQ SN:PGA_scaffold69513__1_contigs__length_16592 LN:16592 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69564__1_contigs__length_12813 LN:12813 skipping SAM header line: @SQ SN:PGA_scaffold69568__1_contigs__length_20857 LN:20857 skipping SAM header line: @SQ SN:PGA_scaffold69576__1_contigs__length_11501 LN:11501 skipping SAM header line: @SQ SN:PGA_scaffold69582__1_contigs__length_16387 LN:16387 skipping SAM header line: @SQ SN:PGA_scaffold69596__1_contigs__length_21217 LN:21217 skipping SAM header line: @SQ SN:PGA_scaffold69600__1_contigs__length_12210 LN:12210 skipping SAM header line: @SQ SN:PGA_scaffold69602__1_contigs__length_11007 LN:11007 skipping SAM header line: @SQ SN:PGA_scaffold69603__1_contigs__length_29700 LN:29700 skipping SAM header line: @SQ SN:PGA_scaffold69609__1_contigs__length_27195 LN:27195 skipping SAM header line: @SQ SN:PGA_scaffold69611__1_contigs__length_20560 LN:20560 skipping SAM header line: @SQ SN:PGA_scaffold69612__1_contigs__length_15716 LN:15716 skipping SAM header line: @SQ SN:PGA_scaffold69613__1_contigs__length_25958 LN:25958 skipping SAM header line: @SQ SN:PGA_scaffold69614__1_contigs__length_10097 LN:10097 skipping SAM header line: @SQ SN:PGA_scaffold69615__1_contigs__length_11091 LN:11091 skipping SAM header line: @SQ SN:PGA_scaffold69616__1_contigs__length_21901 LN:21901 skipping SAM header line: @SQ SN:PGA_scaffold69619__1_contigs__length_30388 LN:30388 skipping SAM header line: @SQ SN:PGA_scaffold69621__1_contigs__length_30422 LN:30422 skipping SAM header line: @SQ SN:PGA_scaffold69622__1_contigs__length_37660 LN:37660 skipping SAM header line: @SQ SN:PGA_scaffold69623__1_contigs__length_13469 LN:13469 skipping SAM header line: @SQ SN:PGA_scaffold69624__1_contigs__length_12227 LN:12227 skipping SAM header line: @SQ SN:PGA_scaffold69626__1_contigs__length_23545 LN:23545 skipping SAM header line: @SQ SN:PGA_scaffold69631__1_contigs__length_44909 LN:44909 skipping SAM header line: @SQ SN:PGA_scaffold69634__1_contigs__length_12204 LN:12204 skipping SAM header line: @SQ SN:PGA_scaffold69635__1_contigs__length_12931 LN:12931 skipping SAM header line: @SQ SN:PGA_scaffold69641__1_contigs__length_13940 LN:13940 skipping SAM header line: @SQ SN:PGA_scaffold69644__1_contigs__length_27140 LN:27140 skipping SAM header line: @SQ SN:PGA_scaffold69645__1_contigs__length_46339 LN:46339 skipping SAM header line: @SQ SN:PGA_scaffold69646__1_contigs__length_13676 LN:13676 skipping SAM header line: @SQ SN:PGA_scaffold69648__1_contigs__length_12443 LN:12443 skipping SAM header line: @SQ SN:PGA_scaffold69650__1_contigs__length_12765 LN:12765 skipping SAM header line: @SQ SN:PGA_scaffold69660__1_contigs__length_25023 LN:25023 skipping SAM header line: @SQ SN:PGA_scaffold69662__1_contigs__length_14951 LN:14951 skipping SAM header line: @SQ SN:PGA_scaffold69664__1_contigs__length_27848 LN:27848 skipping SAM header line: @SQ SN:PGA_scaffold69665__1_contigs__length_11434 LN:11434 skipping SAM header line: @SQ SN:PGA_scaffold69667__1_contigs__length_10796 LN:10796 skipping SAM header line: @SQ SN:PGA_scaffold69668__1_contigs__length_28674 LN:28674 skipping SAM header line: @SQ SN:PGA_scaffold69669__1_contigs__length_34799 LN:34799 skipping SAM header line: @SQ SN:PGA_scaffold69673__1_contigs__length_28604 LN:28604 skipping SAM header line: @SQ SN:PGA_scaffold69682__1_contigs__length_10023 LN:10023 skipping SAM header line: @SQ SN:PGA_scaffold69683__1_contigs__length_40360 LN:40360 skipping SAM header line: @SQ SN:PGA_scaffold69684__1_contigs__length_12239 LN:12239 skipping SAM header line: @SQ SN:PGA_scaffold69685__1_contigs__length_29030 LN:29030 skipping SAM header line: @SQ SN:PGA_scaffold69689__1_contigs__length_25381 LN:25381 skipping SAM header line: @SQ SN:PGA_scaffold69690__1_contigs__length_10293 LN:10293 skipping SAM header line: @SQ SN:PGA_scaffold69691__1_contigs__length_27998 LN:27998 skipping SAM header line: @SQ SN:PGA_scaffold69693__1_contigs__length_24611 LN:24611 skipping SAM header line: @SQ SN:PGA_scaffold69701__1_contigs__length_12056 LN:12056 skipping SAM header line: @SQ SN:PGA_scaffold69704__1_contigs__length_15592 LN:15592 skipping SAM header line: @SQ SN:PGA_scaffold69705__1_contigs__length_16158 LN:16158 skipping SAM header line: @SQ SN:PGA_scaffold69711__1_contigs__length_31728 LN:31728 skipping SAM header line: @SQ SN:PGA_scaffold69718__1_contigs__length_12503 LN:12503 skipping SAM header line: @SQ SN:PGA_scaffold69720__1_contigs__length_12224 LN:12224 skipping SAM header line: @SQ SN:PGA_scaffold69724__1_contigs__length_36238 LN:36238 skipping SAM header line: @SQ SN:PGA_scaffold69727__1_contigs__length_19072 LN:19072 skipping SAM header line: @SQ SN:PGA_scaffold69729__1_contigs__length_18660 LN:18660 skipping SAM header line: @SQ SN:PGA_scaffold69732__1_contigs__length_19562 LN:19562 skipping SAM header line: @SQ SN:PGA_scaffold69733__1_contigs__length_25172 LN:25172 skipping SAM header line: @SQ SN:PGA_scaffold69736__1_contigs__length_15256 LN:15256 skipping SAM header line: @SQ SN:PGA_scaffold69738__1_contigs__length_23309 LN:23309 skipping SAM header line: @SQ SN:PGA_scaffold69739__1_contigs__length_26905 LN:26905 skipping SAM header line: @SQ SN:PGA_scaffold69743__1_contigs__length_24037 LN:24037 skipping SAM header line: @SQ SN:PGA_scaffold69744__1_contigs__length_24081 LN:24081 skipping SAM header line: @SQ SN:PGA_scaffold69745__1_contigs__length_26908 LN:26908 skipping SAM header line: @SQ SN:PGA_scaffold69749__1_contigs__length_15526 LN:15526 skipping SAM header line: @SQ SN:PGA_scaffold69750__1_contigs__length_20950 LN:20950 skipping SAM header line: @SQ SN:PGA_scaffold69752__1_contigs__length_25204 LN:25204 skipping SAM header line: @SQ SN:PGA_scaffold69754__1_contigs__length_11668 LN:11668 skipping SAM header line: @SQ SN:PGA_scaffold69757__1_contigs__length_13015 LN:13015 skipping SAM header line: @SQ SN:PGA_scaffold69766__1_contigs__length_10093 LN:10093 skipping SAM header line: @SQ SN:PGA_scaffold69767__1_contigs__length_14271 LN:14271 skipping SAM header line: @SQ SN:PGA_scaffold69769__1_contigs__length_67326 LN:67326 skipping SAM header line: @SQ SN:PGA_scaffold69772__1_contigs__length_28251 LN:28251 skipping SAM header line: @SQ SN:PGA_scaffold69777__1_contigs__length_11173 LN:11173 skipping SAM header line: @SQ SN:PGA_scaffold69780__1_contigs__length_36085 LN:36085 skipping SAM header line: @SQ SN:PGA_scaffold69781__1_contigs__length_27890 LN:27890 skipping SAM header line: @SQ SN:PGA_scaffold69786__1_contigs__length_17981 LN:17981 skipping SAM header line: @SQ SN:PGA_scaffold69787__1_contigs__length_18014 LN:18014 skipping SAM header line: @SQ SN:PGA_scaffold69789__1_contigs__length_20910 LN:20910 skipping SAM header line: @SQ SN:PGA_scaffold69791__1_contigs__length_10990 LN:10990 skipping SAM header line: @SQ SN:PGA_scaffold69792__1_contigs__length_15927 LN:15927 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69829__1_contigs__length_34810 LN:34810 skipping SAM header line: @SQ SN:PGA_scaffold69830__1_contigs__length_24232 LN:24232 skipping SAM header line: @SQ SN:PGA_scaffold69831__1_contigs__length_18481 LN:18481 skipping SAM header line: @SQ SN:PGA_scaffold69835__1_contigs__length_10896 LN:10896 skipping SAM header line: @SQ SN:PGA_scaffold69838__1_contigs__length_17950 LN:17950 skipping SAM header line: @SQ SN:PGA_scaffold69849__1_contigs__length_14121 LN:14121 skipping SAM header line: @SQ SN:PGA_scaffold69853__1_contigs__length_12437 LN:12437 skipping SAM header line: @SQ SN:PGA_scaffold69868__1_contigs__length_11925 LN:11925 skipping SAM header line: @SQ SN:PGA_scaffold69869__1_contigs__length_52996 LN:52996 skipping SAM header line: @SQ SN:PGA_scaffold69871__1_contigs__length_18251 LN:18251 skipping SAM header line: @SQ SN:PGA_scaffold69872__1_contigs__length_10039 LN:10039 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69929__1_contigs__length_17877 LN:17877 skipping SAM header line: @SQ SN:PGA_scaffold69930__1_contigs__length_16010 LN:16010 skipping SAM header line: @SQ SN:PGA_scaffold69932__1_contigs__length_11910 LN:11910 skipping SAM header line: @SQ SN:PGA_scaffold69935__1_contigs__length_32162 LN:32162 skipping SAM header line: @SQ SN:PGA_scaffold69937__1_contigs__length_17078 LN:17078 skipping SAM header line: @SQ SN:PGA_scaffold69939__1_contigs__length_10146 LN:10146 skipping SAM header line: @SQ SN:PGA_scaffold69941__1_contigs__length_12759 LN:12759 skipping SAM header line: @SQ SN:PGA_scaffold69945__1_contigs__length_16233 LN:16233 skipping SAM header line: @SQ SN:PGA_scaffold69946__1_contigs__length_10790 LN:10790 skipping SAM header line: @SQ SN:PGA_scaffold69948__1_contigs__length_15717 LN:15717 skipping SAM header line: @SQ SN:PGA_scaffold69949__1_contigs__length_34320 LN:34320 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69975__1_contigs__length_12461 LN:12461 skipping SAM header line: @SQ SN:PGA_scaffold69978__1_contigs__length_11098 LN:11098 skipping SAM header line: @SQ SN:PGA_scaffold69983__1_contigs__length_15593 LN:15593 skipping SAM header line: @SQ SN:PGA_scaffold69984__1_contigs__length_60451 LN:60451 skipping SAM header line: @SQ SN:PGA_scaffold69987__1_contigs__length_13384 LN:13384 skipping SAM header line: @SQ SN:PGA_scaffold69991__1_contigs__length_20440 LN:20440 skipping SAM header line: @SQ SN:PGA_scaffold69995__1_contigs__length_13590 LN:13590 skipping SAM header line: @SQ SN:PGA_scaffold69997__1_contigs__length_22219 LN:22219 skipping SAM header line: @SQ SN:PGA_scaffold70005__1_contigs__length_11176 LN:11176 skipping SAM header line: @SQ SN:PGA_scaffold70013__1_contigs__length_13162 LN:13162 skipping SAM header line: @SQ SN:PGA_scaffold70019__1_contigs__length_11953 LN:11953 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70079__1_contigs__length_22537 LN:22537 skipping SAM header line: @SQ SN:PGA_scaffold70080__1_contigs__length_22598 LN:22598 skipping SAM header line: @SQ SN:PGA_scaffold70086__1_contigs__length_42850 LN:42850 skipping SAM header line: @SQ SN:PGA_scaffold70088__1_contigs__length_11372 LN:11372 skipping SAM header line: @SQ SN:PGA_scaffold70089__1_contigs__length_30721 LN:30721 skipping SAM header line: @SQ SN:PGA_scaffold70095__1_contigs__length_28144 LN:28144 skipping SAM header line: @SQ SN:PGA_scaffold70096__1_contigs__length_11556 LN:11556 skipping SAM header line: @SQ SN:PGA_scaffold70101__1_contigs__length_16886 LN:16886 skipping SAM header line: @SQ SN:PGA_scaffold70102__1_contigs__length_12419 LN:12419 skipping SAM header line: @SQ SN:PGA_scaffold70105__1_contigs__length_12832 LN:12832 skipping SAM header line: @SQ SN:PGA_scaffold70108__1_contigs__length_34192 LN:34192 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70142__1_contigs__length_30446 LN:30446 skipping SAM header line: @SQ SN:PGA_scaffold70146__1_contigs__length_28346 LN:28346 skipping SAM header line: @SQ SN:PGA_scaffold70147__1_contigs__length_10932 LN:10932 skipping SAM header line: @SQ SN:PGA_scaffold70148__1_contigs__length_34259 LN:34259 skipping SAM header line: @SQ SN:PGA_scaffold70149__1_contigs__length_21986 LN:21986 skipping SAM header line: @SQ SN:PGA_scaffold70156__1_contigs__length_18195 LN:18195 skipping SAM header line: @SQ SN:PGA_scaffold70159__1_contigs__length_39306 LN:39306 skipping SAM header line: @SQ SN:PGA_scaffold70162__1_contigs__length_16171 LN:16171 skipping SAM header line: @SQ SN:PGA_scaffold70163__1_contigs__length_16027 LN:16027 skipping SAM header line: @SQ SN:PGA_scaffold70168__1_contigs__length_16695 LN:16695 skipping SAM header line: @SQ SN:PGA_scaffold70172__1_contigs__length_32250 LN:32250 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70212__1_contigs__length_17146 LN:17146 skipping SAM header line: @SQ SN:PGA_scaffold70214__1_contigs__length_20196 LN:20196 skipping SAM header line: @SQ SN:PGA_scaffold70218__1_contigs__length_31585 LN:31585 skipping SAM header line: @SQ SN:PGA_scaffold70219__1_contigs__length_11824 LN:11824 skipping SAM header line: @SQ SN:PGA_scaffold70225__1_contigs__length_12243 LN:12243 skipping SAM header line: @SQ SN:PGA_scaffold70228__1_contigs__length_47471 LN:47471 skipping SAM header line: @SQ SN:PGA_scaffold70236__1_contigs__length_12400 LN:12400 skipping SAM header line: @SQ SN:PGA_scaffold70237__1_contigs__length_16359 LN:16359 skipping SAM header line: @SQ SN:PGA_scaffold70238__1_contigs__length_15955 LN:15955 skipping SAM header line: @SQ SN:PGA_scaffold70241__1_contigs__length_36884 LN:36884 skipping SAM header line: @SQ SN:PGA_scaffold70243__1_contigs__length_13056 LN:13056 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70295__1_contigs__length_17893 LN:17893 skipping SAM header line: @SQ SN:PGA_scaffold70297__1_contigs__length_13250 LN:13250 skipping SAM header line: @SQ SN:PGA_scaffold70301__1_contigs__length_33670 LN:33670 skipping SAM header line: @SQ SN:PGA_scaffold70316__1_contigs__length_10082 LN:10082 skipping SAM header line: @SQ SN:PGA_scaffold70322__1_contigs__length_11693 LN:11693 skipping SAM header line: @SQ SN:PGA_scaffold70323__1_contigs__length_12755 LN:12755 skipping SAM header line: @SQ SN:PGA_scaffold70325__1_contigs__length_23571 LN:23571 skipping SAM header line: @SQ SN:PGA_scaffold70330__1_contigs__length_13214 LN:13214 skipping SAM header line: @SQ SN:PGA_scaffold70335__1_contigs__length_11934 LN:11934 skipping SAM header line: @SQ SN:PGA_scaffold70338__1_contigs__length_19223 LN:19223 skipping SAM header line: @SQ SN:PGA_scaffold70345__1_contigs__length_10857 LN:10857 skipping SAM header line: @SQ SN:PGA_scaffold70350__1_contigs__length_28437 LN:28437 skipping SAM header line: @SQ SN:PGA_scaffold70351__1_contigs__length_15641 LN:15641 skipping SAM header line: @SQ SN:PGA_scaffold70359__1_contigs__length_31823 LN:31823 skipping SAM header line: @SQ SN:PGA_scaffold70360__1_contigs__length_10515 LN:10515 skipping SAM header line: @SQ SN:PGA_scaffold70363__1_contigs__length_23293 LN:23293 skipping SAM header line: @SQ SN:PGA_scaffold70365__1_contigs__length_14586 LN:14586 skipping SAM header line: @SQ SN:PGA_scaffold70366__1_contigs__length_18640 LN:18640 skipping SAM header line: @SQ SN:PGA_scaffold70368__1_contigs__length_27911 LN:27911 skipping SAM header line: @SQ SN:PGA_scaffold70370__1_contigs__length_23691 LN:23691 skipping SAM header line: @SQ SN:PGA_scaffold70371__1_contigs__length_15985 LN:15985 skipping SAM header line: @SQ SN:PGA_scaffold70375__1_contigs__length_17922 LN:17922 skipping SAM header line: @SQ SN:PGA_scaffold70383__1_contigs__length_13250 LN:13250 skipping SAM header line: @SQ SN:PGA_scaffold70385__1_contigs__length_19438 LN:19438 skipping SAM header line: @SQ SN:PGA_scaffold70390__1_contigs__length_14784 LN:14784 skipping SAM header line: @SQ SN:PGA_scaffold70396__1_contigs__length_10129 LN:10129 skipping SAM header line: @SQ SN:PGA_scaffold70402__1_contigs__length_15466 LN:15466 skipping SAM header line: @SQ SN:PGA_scaffold70409__1_contigs__length_30379 LN:30379 skipping SAM header line: @SQ SN:PGA_scaffold70413__1_contigs__length_26882 LN:26882 skipping SAM header line: @SQ SN:PGA_scaffold70417__1_contigs__length_22711 LN:22711 skipping SAM header line: @SQ SN:PGA_scaffold70418__1_contigs__length_12072 LN:12072 skipping SAM header line: @SQ SN:PGA_scaffold70419__1_contigs__length_15483 LN:15483 skipping SAM header line: @SQ SN:PGA_scaffold70421__1_contigs__length_25824 LN:25824 skipping SAM header line: @SQ SN:PGA_scaffold70423__1_contigs__length_18142 LN:18142 skipping SAM header line: @SQ SN:PGA_scaffold70424__1_contigs__length_25315 LN:25315 skipping SAM header line: @SQ SN:PGA_scaffold70426__1_contigs__length_24645 LN:24645 skipping SAM header line: @SQ SN:PGA_scaffold70427__1_contigs__length_20228 LN:20228 skipping SAM header line: @SQ SN:PGA_scaffold70434__1_contigs__length_21219 LN:21219 skipping SAM header line: @SQ SN:PGA_scaffold70435__1_contigs__length_29664 LN:29664 skipping SAM header line: @SQ SN:PGA_scaffold70436__1_contigs__length_14860 LN:14860 skipping SAM header line: @SQ SN:PGA_scaffold70439__1_contigs__length_13027 LN:13027 skipping SAM header line: @SQ SN:PGA_scaffold70440__1_contigs__length_17247 LN:17247 skipping SAM header line: @SQ SN:PGA_scaffold70447__1_contigs__length_23861 LN:23861 skipping SAM header line: @SQ SN:PGA_scaffold70448__1_contigs__length_39500 LN:39500 skipping SAM header line: @SQ SN:PGA_scaffold70450__1_contigs__length_12307 LN:12307 skipping SAM header line: @SQ SN:PGA_scaffold70453__1_contigs__length_11281 LN:11281 skipping SAM header line: @SQ SN:PGA_scaffold70468__1_contigs__length_51685 LN:51685 skipping SAM header line: @SQ SN:PGA_scaffold70469__1_contigs__length_20210 LN:20210 skipping SAM header line: @SQ SN:PGA_scaffold70474__1_contigs__length_50365 LN:50365 skipping SAM header line: @SQ SN:PGA_scaffold70476__1_contigs__length_49360 LN:49360 skipping SAM header line: @SQ SN:PGA_scaffold70477__1_contigs__length_19723 LN:19723 skipping SAM header line: @SQ SN:PGA_scaffold70485__1_contigs__length_23016 LN:23016 skipping SAM header line: @SQ SN:PGA_scaffold70489__1_contigs__length_43424 LN:43424 skipping SAM header line: @SQ SN:PGA_scaffold70492__1_contigs__length_45967 LN:45967 skipping SAM header line: @SQ SN:PGA_scaffold70497__1_contigs__length_10048 LN:10048 skipping SAM header line: @SQ SN:PGA_scaffold70499__1_contigs__length_12329 LN:12329 skipping SAM header line: @SQ SN:PGA_scaffold70503__1_contigs__length_17026 LN:17026 skipping SAM header line: @SQ SN:PGA_scaffold70506__1_contigs__length_45721 LN:45721 skipping SAM header line: @SQ SN:PGA_scaffold70519__1_contigs__length_14094 LN:14094 skipping SAM header line: @SQ SN:PGA_scaffold70524__1_contigs__length_38508 LN:38508 skipping SAM header line: @SQ SN:PGA_scaffold70526__1_contigs__length_15527 LN:15527 skipping SAM header line: @SQ SN:PGA_scaffold70527__1_contigs__length_47656 LN:47656 skipping SAM header line: @SQ SN:PGA_scaffold70530__1_contigs__length_39511 LN:39511 skipping SAM header line: @SQ SN:PGA_scaffold70532__1_contigs__length_10801 LN:10801 skipping SAM header line: @SQ SN:PGA_scaffold70533__1_contigs__length_26547 LN:26547 skipping SAM header line: @SQ SN:PGA_scaffold70534__1_contigs__length_18255 LN:18255 skipping SAM header line: @SQ SN:PGA_scaffold70535__1_contigs__length_26427 LN:26427 skipping SAM header line: @SQ SN:PGA_scaffold70541__1_contigs__length_14321 LN:14321 skipping SAM header line: @SQ SN:PGA_scaffold70543__1_contigs__length_23174 LN:23174 skipping SAM header line: @SQ SN:PGA_scaffold70546__1_contigs__length_14031 LN:14031 skipping SAM header line: @SQ SN:PGA_scaffold70549__1_contigs__length_17268 LN:17268 skipping SAM header line: @SQ SN:PGA_scaffold70550__1_contigs__length_11747 LN:11747 skipping SAM header line: @SQ SN:PGA_scaffold70553__1_contigs__length_17810 LN:17810 skipping SAM header line: @SQ SN:PGA_scaffold70554__1_contigs__length_16333 LN:16333 skipping SAM header line: @SQ SN:PGA_scaffold70555__1_contigs__length_16109 LN:16109 skipping SAM header line: @SQ SN:PGA_scaffold70558__1_contigs__length_17174 LN:17174 skipping SAM header line: @SQ SN:PGA_scaffold70559__1_contigs__length_11863 LN:11863 skipping SAM header line: @SQ SN:PGA_scaffold70562__1_contigs__length_12840 LN:12840 skipping SAM header line: @SQ SN:PGA_scaffold70566__1_contigs__length_10709 LN:10709 skipping SAM header line: @SQ SN:PGA_scaffold70571__1_contigs__length_12377 LN:12377 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70621__1_contigs__length_11716 LN:11716 skipping SAM header line: @SQ SN:PGA_scaffold70628__1_contigs__length_97563 LN:97563 skipping SAM header line: @SQ SN:PGA_scaffold70629__1_contigs__length_23304 LN:23304 skipping SAM header line: @SQ SN:PGA_scaffold70631__1_contigs__length_11559 LN:11559 skipping SAM header line: @SQ SN:PGA_scaffold70637__1_contigs__length_38808 LN:38808 skipping SAM header line: @SQ SN:PGA_scaffold70639__1_contigs__length_30384 LN:30384 skipping SAM header line: @SQ SN:PGA_scaffold70640__1_contigs__length_30940 LN:30940 skipping SAM header line: @SQ SN:PGA_scaffold70644__1_contigs__length_13189 LN:13189 skipping SAM header line: @SQ SN:PGA_scaffold70650__1_contigs__length_36340 LN:36340 skipping SAM header line: @SQ SN:PGA_scaffold70652__1_contigs__length_42814 LN:42814 skipping SAM header line: @SQ SN:PGA_scaffold70653__1_contigs__length_42188 LN:42188 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70695__1_contigs__length_28073 LN:28073 skipping SAM header line: @SQ SN:PGA_scaffold70705__1_contigs__length_21719 LN:21719 skipping SAM header line: @SQ SN:PGA_scaffold70713__1_contigs__length_25758 LN:25758 skipping SAM header line: @SQ SN:PGA_scaffold70715__1_contigs__length_12368 LN:12368 skipping SAM header line: @SQ SN:PGA_scaffold70722__1_contigs__length_11368 LN:11368 skipping SAM header line: @SQ SN:PGA_scaffold70723__1_contigs__length_11534 LN:11534 skipping SAM header line: @SQ SN:PGA_scaffold70724__1_contigs__length_17079 LN:17079 skipping SAM header line: @SQ SN:PGA_scaffold70734__1_contigs__length_17773 LN:17773 skipping SAM header line: @SQ SN:PGA_scaffold70735__1_contigs__length_10722 LN:10722 skipping SAM header line: @SQ SN:PGA_scaffold70740__1_contigs__length_14421 LN:14421 skipping SAM header line: @SQ SN:PGA_scaffold70742__1_contigs__length_19309 LN:19309 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70785__1_contigs__length_35848 LN:35848 skipping SAM header line: @SQ SN:PGA_scaffold70788__1_contigs__length_34232 LN:34232 skipping SAM header line: @SQ SN:PGA_scaffold70791__1_contigs__length_36664 LN:36664 skipping SAM header line: @SQ SN:PGA_scaffold70792__1_contigs__length_20308 LN:20308 skipping SAM header line: @SQ SN:PGA_scaffold70793__1_contigs__length_31797 LN:31797 skipping SAM header line: @SQ SN:PGA_scaffold70795__1_contigs__length_35890 LN:35890 skipping SAM header line: @SQ SN:PGA_scaffold70796__1_contigs__length_10544 LN:10544 skipping SAM header line: @SQ SN:PGA_scaffold70797__1_contigs__length_14275 LN:14275 skipping SAM header line: @SQ SN:PGA_scaffold70798__1_contigs__length_29751 LN:29751 skipping SAM header line: @SQ SN:PGA_scaffold70803__1_contigs__length_13151 LN:13151 skipping SAM header line: @SQ SN:PGA_scaffold70809__1_contigs__length_27843 LN:27843 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70845__1_contigs__length_21348 LN:21348 skipping SAM header line: @SQ SN:PGA_scaffold70848__1_contigs__length_12973 LN:12973 skipping SAM header line: @SQ SN:PGA_scaffold70849__1_contigs__length_10528 LN:10528 skipping SAM header line: @SQ SN:PGA_scaffold70857__1_contigs__length_18611 LN:18611 skipping SAM header line: @SQ SN:PGA_scaffold70859__1_contigs__length_10095 LN:10095 skipping SAM header line: @SQ SN:PGA_scaffold70860__1_contigs__length_14111 LN:14111 skipping SAM header line: @SQ SN:PGA_scaffold70866__1_contigs__length_29645 LN:29645 skipping SAM header line: @SQ SN:PGA_scaffold70867__1_contigs__length_12408 LN:12408 skipping SAM header line: @SQ SN:PGA_scaffold70870__1_contigs__length_21470 LN:21470 skipping SAM header line: @SQ SN:PGA_scaffold70872__1_contigs__length_10613 LN:10613 skipping SAM header line: @SQ SN:PGA_scaffold70880__1_contigs__length_31372 LN:31372 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70914__1_contigs__length_22820 LN:22820 skipping SAM header line: @SQ SN:PGA_scaffold70918__1_contigs__length_10696 LN:10696 skipping SAM header line: @SQ SN:PGA_scaffold70919__1_contigs__length_35080 LN:35080 skipping SAM header line: @SQ SN:PGA_scaffold70921__1_contigs__length_17938 LN:17938 skipping SAM header line: @SQ SN:PGA_scaffold70928__1_contigs__length_14035 LN:14035 skipping SAM header line: @SQ SN:PGA_scaffold70939__1_contigs__length_14461 LN:14461 skipping SAM header line: @SQ SN:PGA_scaffold70942__1_contigs__length_24717 LN:24717 skipping SAM header line: @SQ SN:PGA_scaffold70944__1_contigs__length_17097 LN:17097 skipping SAM header line: @SQ SN:PGA_scaffold70946__1_contigs__length_21458 LN:21458 skipping SAM header line: @SQ SN:PGA_scaffold70948__1_contigs__length_25922 LN:25922 skipping SAM header line: @SQ SN:PGA_scaffold70949__1_contigs__length_19537 LN:19537 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70990__1_contigs__length_44272 LN:44272 skipping SAM header line: @SQ SN:PGA_scaffold70991__1_contigs__length_13562 LN:13562 skipping SAM header line: @SQ SN:PGA_scaffold70996__1_contigs__length_11183 LN:11183 skipping SAM header line: @SQ SN:PGA_scaffold70997__1_contigs__length_29986 LN:29986 skipping SAM header line: @SQ SN:PGA_scaffold70998__1_contigs__length_17381 LN:17381 skipping SAM header line: @SQ SN:PGA_scaffold71002__1_contigs__length_20336 LN:20336 skipping SAM header line: @SQ SN:PGA_scaffold71003__1_contigs__length_32258 LN:32258 skipping SAM header line: @SQ SN:PGA_scaffold71005__1_contigs__length_18522 LN:18522 skipping SAM header line: @SQ SN:PGA_scaffold71009__1_contigs__length_26173 LN:26173 skipping SAM header line: @SQ SN:PGA_scaffold71010__1_contigs__length_22490 LN:22490 skipping SAM header line: @SQ SN:PGA_scaffold71016__1_contigs__length_52719 LN:52719 skipping SAM header line: @SQ SN:PGA_scaffold71017__1_contigs__length_12630 LN:12630 skipping SAM header line: @SQ SN:PGA_scaffold71021__1_contigs__length_14054 LN:14054 skipping SAM header line: @SQ SN:PGA_scaffold71023__1_contigs__length_42297 LN:42297 skipping SAM header line: @SQ SN:PGA_scaffold71024__1_contigs__length_37906 LN:37906 skipping SAM header line: @SQ SN:PGA_scaffold71026__1_contigs__length_10239 LN:10239 skipping SAM header line: @SQ SN:PGA_scaffold71031__1_contigs__length_10904 LN:10904 skipping SAM header line: @SQ SN:PGA_scaffold71032__1_contigs__length_13197 LN:13197 skipping SAM header line: @SQ SN:PGA_scaffold71036__1_contigs__length_15091 LN:15091 skipping SAM header line: @SQ SN:PGA_scaffold71037__1_contigs__length_17753 LN:17753 skipping SAM header line: @SQ SN:PGA_scaffold71038__1_contigs__length_13384 LN:13384 skipping SAM header line: @SQ SN:PGA_scaffold71040__1_contigs__length_23169 LN:23169 skipping SAM header line: @SQ SN:PGA_scaffold71041__1_contigs__length_15299 LN:15299 skipping SAM header line: @SQ SN:PGA_scaffold71044__1_contigs__length_12167 LN:12167 skipping SAM header line: @SQ SN:PGA_scaffold71047__1_contigs__length_18967 LN:18967 skipping SAM header line: @SQ SN:PGA_scaffold71051__1_contigs__length_23131 LN:23131 skipping SAM header line: @SQ SN:PGA_scaffold71052__1_contigs__length_11922 LN:11922 skipping SAM header line: @SQ SN:PGA_scaffold71053__1_contigs__length_27241 LN:27241 skipping SAM header line: @SQ SN:PGA_scaffold71059__1_contigs__length_26909 LN:26909 skipping SAM header line: @SQ SN:PGA_scaffold71060__1_contigs__length_14505 LN:14505 skipping SAM header line: @SQ SN:PGA_scaffold71063__1_contigs__length_11667 LN:11667 skipping SAM header line: @SQ SN:PGA_scaffold71064__1_contigs__length_13737 LN:13737 skipping SAM header line: @SQ SN:PGA_scaffold71067__1_contigs__length_15816 LN:15816 skipping SAM header line: @SQ SN:PGA_scaffold71068__1_contigs__length_23005 LN:23005 skipping SAM header line: @SQ SN:PGA_scaffold71074__1_contigs__length_10595 LN:10595 skipping SAM header line: @SQ SN:PGA_scaffold71076__1_contigs__length_11470 LN:11470 skipping SAM header line: @SQ SN:PGA_scaffold71080__1_contigs__length_35132 LN:35132 skipping SAM header line: @SQ SN:PGA_scaffold71082__1_contigs__length_15595 LN:15595 skipping SAM header line: @SQ SN:PGA_scaffold71084__1_contigs__length_12151 LN:12151 skipping SAM header line: @SQ SN:PGA_scaffold71087__1_contigs__length_36896 LN:36896 skipping SAM header line: @SQ SN:PGA_scaffold71091__1_contigs__length_33646 LN:33646 skipping SAM header line: @SQ SN:PGA_scaffold71094__1_contigs__length_16149 LN:16149 skipping SAM header line: @SQ SN:PGA_scaffold71098__1_contigs__length_13835 LN:13835 skipping SAM header line: @SQ SN:PGA_scaffold71102__1_contigs__length_24207 LN:24207 skipping SAM header line: @SQ SN:PGA_scaffold71103__1_contigs__length_26141 LN:26141 skipping SAM header line: @SQ SN:PGA_scaffold71104__1_contigs__length_18381 LN:18381 skipping SAM header line: @SQ SN:PGA_scaffold71105__1_contigs__length_14810 LN:14810 skipping SAM header line: @SQ SN:PGA_scaffold71107__1_contigs__length_22081 LN:22081 skipping SAM header line: @SQ SN:PGA_scaffold71111__1_contigs__length_27750 LN:27750 skipping SAM header line: @SQ SN:PGA_scaffold71114__1_contigs__length_18460 LN:18460 skipping SAM header line: @SQ SN:PGA_scaffold71117__1_contigs__length_14606 LN:14606 skipping SAM header line: @SQ SN:PGA_scaffold71118__1_contigs__length_22147 LN:22147 skipping SAM header line: @SQ SN:PGA_scaffold71124__1_contigs__length_13826 LN:13826 skipping SAM header line: @SQ SN:PGA_scaffold71125__1_contigs__length_17260 LN:17260 skipping SAM header line: @SQ SN:PGA_scaffold71134__1_contigs__length_21349 LN:21349 skipping SAM header line: @SQ SN:PGA_scaffold71137__1_contigs__length_13146 LN:13146 skipping SAM header line: @SQ SN:PGA_scaffold71138__1_contigs__length_12816 LN:12816 skipping SAM header line: @SQ SN:PGA_scaffold71139__1_contigs__length_18757 LN:18757 skipping SAM header line: @SQ SN:PGA_scaffold71142__1_contigs__length_17946 LN:17946 skipping SAM header line: @SQ SN:PGA_scaffold71150__1_contigs__length_30573 LN:30573 skipping SAM header line: @SQ SN:PGA_scaffold71155__1_contigs__length_32524 LN:32524 skipping SAM header line: @SQ SN:PGA_scaffold71156__1_contigs__length_19115 LN:19115 skipping SAM header line: @SQ SN:PGA_scaffold71157__1_contigs__length_46861 LN:46861 skipping SAM header line: @SQ SN:PGA_scaffold71159__1_contigs__length_13167 LN:13167 skipping SAM header line: @SQ SN:PGA_scaffold71160__1_contigs__length_15059 LN:15059 skipping SAM header line: @SQ SN:PGA_scaffold71164__1_contigs__length_15329 LN:15329 skipping SAM header line: @SQ SN:PGA_scaffold71167__1_contigs__length_10322 LN:10322 skipping SAM header line: @SQ SN:PGA_scaffold71168__1_contigs__length_27873 LN:27873 skipping SAM header line: @SQ SN:PGA_scaffold71171__1_contigs__length_21406 LN:21406 skipping SAM header line: @SQ SN:PGA_scaffold71172__1_contigs__length_22069 LN:22069 skipping SAM header line: @SQ SN:PGA_scaffold71177__1_contigs__length_13358 LN:13358 skipping SAM header line: @SQ SN:PGA_scaffold71179__1_contigs__length_10169 LN:10169 skipping SAM header line: @SQ SN:PGA_scaffold71182__1_contigs__length_10472 LN:10472 skipping SAM header line: @SQ SN:PGA_scaffold71187__1_contigs__length_11367 LN:11367 skipping SAM header line: @SQ SN:PGA_scaffold71195__1_contigs__length_28462 LN:28462 skipping SAM header line: @SQ SN:PGA_scaffold71196__1_contigs__length_54597 LN:54597 skipping SAM header line: @SQ SN:PGA_scaffold71200__1_contigs__length_24726 LN:24726 skipping SAM header line: @SQ SN:PGA_scaffold71202__1_contigs__length_18989 LN:18989 skipping SAM header line: @SQ SN:PGA_scaffold71206__1_contigs__length_30090 LN:30090 skipping SAM header line: @SQ SN:PGA_scaffold71207__1_contigs__length_51143 LN:51143 skipping SAM header line: @SQ SN:PGA_scaffold71213__1_contigs__length_30215 LN:30215 skipping SAM header line: @SQ SN:PGA_scaffold71214__1_contigs__length_20857 LN:20857 skipping SAM header line: @SQ SN:PGA_scaffold71215__1_contigs__length_25555 LN:25555 skipping SAM header line: @SQ SN:PGA_scaffold71217__1_contigs__length_14959 LN:14959 skipping SAM header line: @SQ SN:PGA_scaffold71220__1_contigs__length_17543 LN:17543 skipping SAM header line: @SQ SN:PGA_scaffold71222__1_contigs__length_13731 LN:13731 skipping SAM header line: @SQ SN:PGA_scaffold71224__1_contigs__length_17631 LN:17631 skipping SAM header line: @SQ SN:PGA_scaffold71232__1_contigs__length_34336 LN:34336 skipping SAM header line: @SQ SN:PGA_scaffold71233__1_contigs__length_13104 LN:13104 skipping SAM header line: @SQ SN:PGA_scaffold71242__1_contigs__length_41800 LN:41800 skipping SAM header line: @SQ SN:PGA_scaffold71250__1_contigs__length_10262 LN:10262 skipping SAM header line: @SQ SN:PGA_scaffold71254__1_contigs__length_14505 LN:14505 skipping SAM header line: @SQ SN:PGA_scaffold71259__1_contigs__length_21342 LN:21342 skipping SAM header line: @SQ SN:PGA_scaffold71267__1_contigs__length_28487 LN:28487 skipping SAM header line: @SQ SN:PGA_scaffold71269__1_contigs__length_10506 LN:10506 skipping SAM header line: @SQ SN:PGA_scaffold71274__1_contigs__length_40536 LN:40536 skipping SAM header line: @SQ SN:PGA_scaffold71277__1_contigs__length_12658 LN:12658 skipping SAM header line: @SQ SN:PGA_scaffold71290__1_contigs__length_23545 LN:23545 skipping SAM header line: @SQ SN:PGA_scaffold71291__1_contigs__length_27886 LN:27886 skipping SAM header line: @SQ SN:PGA_scaffold71298__1_contigs__length_10270 LN:10270 skipping SAM header line: @SQ SN:PGA_scaffold71299__1_contigs__length_18131 LN:18131 skipping SAM header line: @SQ SN:PGA_scaffold71301__1_contigs__length_19866 LN:19866 skipping SAM header line: @SQ SN:PGA_scaffold71303__1_contigs__length_45292 LN:45292 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71346__1_contigs__length_42813 LN:42813 skipping SAM header line: @SQ SN:PGA_scaffold71347__1_contigs__length_19551 LN:19551 skipping SAM header line: @SQ SN:PGA_scaffold71351__1_contigs__length_13906 LN:13906 skipping SAM header line: @SQ SN:PGA_scaffold71352__1_contigs__length_24380 LN:24380 skipping SAM header line: @SQ SN:PGA_scaffold71357__1_contigs__length_16993 LN:16993 skipping SAM header line: @SQ SN:PGA_scaffold71358__1_contigs__length_18333 LN:18333 skipping SAM header line: @SQ SN:PGA_scaffold71359__1_contigs__length_14289 LN:14289 skipping SAM header line: @SQ SN:PGA_scaffold71369__1_contigs__length_16721 LN:16721 skipping SAM header line: @SQ SN:PGA_scaffold71374__1_contigs__length_10111 LN:10111 skipping SAM header line: @SQ SN:PGA_scaffold71395__1_contigs__length_38671 LN:38671 skipping SAM header line: @SQ SN:PGA_scaffold71397__1_contigs__length_30669 LN:30669 skipping SAM header line: @SQ SN:PGA_scaffold71401__1_contigs__length_10375 LN:10375 skipping SAM header line: @SQ SN:PGA_scaffold71403__1_contigs__length_14926 LN:14926 skipping SAM header line: @SQ SN:PGA_scaffold71404__1_contigs__length_22853 LN:22853 skipping SAM header line: @SQ SN:PGA_scaffold71410__1_contigs__length_26199 LN:26199 skipping SAM header line: @SQ SN:PGA_scaffold71413__1_contigs__length_25313 LN:25313 skipping SAM header line: @SQ SN:PGA_scaffold71416__1_contigs__length_14043 LN:14043 skipping SAM header line: @SQ SN:PGA_scaffold71422__1_contigs__length_21375 LN:21375 skipping SAM header line: @SQ SN:PGA_scaffold71424__1_contigs__length_10310 LN:10310 skipping SAM header line: @SQ SN:PGA_scaffold71428__1_contigs__length_15675 LN:15675 skipping SAM header line: @SQ SN:PGA_scaffold71429__1_contigs__length_10100 LN:10100 skipping SAM header line: @SQ SN:PGA_scaffold71439__1_contigs__length_17437 LN:17437 skipping SAM header line: @SQ SN:PGA_scaffold71443__1_contigs__length_10497 LN:10497 skipping SAM header line: @SQ SN:PGA_scaffold71444__1_contigs__length_12169 LN:12169 skipping SAM header line: @SQ SN:PGA_scaffold71453__1_contigs__length_16930 LN:16930 skipping SAM header line: @SQ SN:PGA_scaffold71455__1_contigs__length_57134 LN:57134 skipping SAM header line: @SQ SN:PGA_scaffold71456__1_contigs__length_21591 LN:21591 skipping SAM header line: @SQ SN:PGA_scaffold71463__1_contigs__length_12793 LN:12793 skipping SAM header line: @SQ SN:PGA_scaffold71465__1_contigs__length_22365 LN:22365 skipping SAM header line: @SQ SN:PGA_scaffold71466__1_contigs__length_26568 LN:26568 skipping SAM header line: @SQ SN:PGA_scaffold71476__1_contigs__length_10813 LN:10813 skipping SAM header line: @SQ SN:PGA_scaffold71477__1_contigs__length_29106 LN:29106 skipping SAM header line: @SQ SN:PGA_scaffold71481__1_contigs__length_13487 LN:13487 skipping SAM header line: @SQ SN:PGA_scaffold71488__1_contigs__length_33569 LN:33569 skipping SAM header line: @SQ SN:PGA_scaffold71490__1_contigs__length_19511 LN:19511 skipping SAM header line: @SQ SN:PGA_scaffold71494__1_contigs__length_14108 LN:14108 skipping SAM header line: @SQ SN:PGA_scaffold71499__1_contigs__length_20944 LN:20944 skipping SAM header line: @SQ SN:PGA_scaffold71500__1_contigs__length_18950 LN:18950 skipping SAM header line: @SQ SN:PGA_scaffold71510__1_contigs__length_10583 LN:10583 skipping SAM header line: @SQ SN:PGA_scaffold71511__1_contigs__length_17009 LN:17009 skipping SAM header line: @SQ SN:PGA_scaffold71515__1_contigs__length_12184 LN:12184 skipping SAM header line: @SQ SN:PGA_scaffold71519__1_contigs__length_17257 LN:17257 skipping SAM header line: @SQ SN:PGA_scaffold71520__1_contigs__length_33829 LN:33829 skipping SAM header line: @SQ SN:PGA_scaffold71526__1_contigs__length_11944 LN:11944 skipping SAM header line: @SQ SN:PGA_scaffold71527__1_contigs__length_11619 LN:11619 skipping SAM header line: @SQ SN:PGA_scaffold71528__1_contigs__length_39316 LN:39316 skipping SAM header line: @SQ SN:PGA_scaffold71531__1_contigs__length_14810 LN:14810 skipping SAM header line: @SQ SN:PGA_scaffold71532__1_contigs__length_14594 LN:14594 skipping SAM header line: @SQ SN:PGA_scaffold71536__1_contigs__length_20871 LN:20871 skipping SAM header line: @SQ SN:PGA_scaffold71542__1_contigs__length_26523 LN:26523 skipping SAM header line: @SQ SN:PGA_scaffold71545__1_contigs__length_25677 LN:25677 skipping SAM header line: @SQ SN:PGA_scaffold71546__1_contigs__length_21823 LN:21823 skipping SAM header line: @SQ SN:PGA_scaffold71549__1_contigs__length_10688 LN:10688 skipping SAM header line: @SQ SN:PGA_scaffold71553__1_contigs__length_18478 LN:18478 skipping SAM header line: @SQ SN:PGA_scaffold71554__1_contigs__length_29532 LN:29532 skipping SAM header line: @SQ SN:PGA_scaffold71558__1_contigs__length_10954 LN:10954 skipping SAM header line: @SQ SN:PGA_scaffold71563__1_contigs__length_24371 LN:24371 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71607__1_contigs__length_11218 LN:11218 skipping SAM header line: @SQ SN:PGA_scaffold71609__1_contigs__length_13975 LN:13975 skipping SAM header line: @SQ SN:PGA_scaffold71615__1_contigs__length_27719 LN:27719 skipping SAM header line: @SQ SN:PGA_scaffold71617__1_contigs__length_12858 LN:12858 skipping SAM header line: @SQ SN:PGA_scaffold71619__1_contigs__length_10126 LN:10126 skipping SAM header line: @SQ SN:PGA_scaffold71622__1_contigs__length_20668 LN:20668 skipping SAM header line: @SQ SN:PGA_scaffold71626__1_contigs__length_14377 LN:14377 skipping SAM header line: @SQ SN:PGA_scaffold71627__1_contigs__length_19812 LN:19812 skipping SAM header line: @SQ SN:PGA_scaffold71630__1_contigs__length_17292 LN:17292 skipping SAM header line: @SQ SN:PGA_scaffold71631__1_contigs__length_23529 LN:23529 skipping SAM header line: @SQ SN:PGA_scaffold71639__1_contigs__length_32497 LN:32497 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71671__1_contigs__length_34003 LN:34003 skipping SAM header line: @SQ SN:PGA_scaffold71677__1_contigs__length_19803 LN:19803 skipping SAM header line: @SQ SN:PGA_scaffold71683__1_contigs__length_10943 LN:10943 skipping SAM header line: @SQ SN:PGA_scaffold71685__1_contigs__length_12889 LN:12889 skipping SAM header line: @SQ SN:PGA_scaffold71686__1_contigs__length_54590 LN:54590 skipping SAM header line: @SQ SN:PGA_scaffold71691__1_contigs__length_12567 LN:12567 skipping SAM header line: @SQ SN:PGA_scaffold71693__1_contigs__length_16375 LN:16375 skipping SAM header line: @SQ SN:PGA_scaffold71700__1_contigs__length_34568 LN:34568 skipping SAM header line: @SQ SN:PGA_scaffold71701__1_contigs__length_21280 LN:21280 skipping SAM header line: @SQ SN:PGA_scaffold71702__1_contigs__length_15587 LN:15587 skipping SAM header line: @SQ SN:PGA_scaffold71704__1_contigs__length_10040 LN:10040 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71752__1_contigs__length_21489 LN:21489 skipping SAM header line: @SQ SN:PGA_scaffold71754__1_contigs__length_12589 LN:12589 skipping SAM header line: @SQ SN:PGA_scaffold71755__1_contigs__length_38511 LN:38511 skipping SAM header line: @SQ SN:PGA_scaffold71759__1_contigs__length_10395 LN:10395 skipping SAM header line: @SQ SN:PGA_scaffold71762__1_contigs__length_15775 LN:15775 skipping SAM header line: @SQ SN:PGA_scaffold71775__1_contigs__length_27793 LN:27793 skipping SAM header line: @SQ SN:PGA_scaffold71777__1_contigs__length_16048 LN:16048 skipping SAM header line: @SQ SN:PGA_scaffold71779__1_contigs__length_40693 LN:40693 skipping SAM header line: @SQ SN:PGA_scaffold71786__1_contigs__length_29147 LN:29147 skipping SAM header line: @SQ SN:PGA_scaffold71795__1_contigs__length_34223 LN:34223 skipping SAM header line: @SQ SN:PGA_scaffold71796__1_contigs__length_11998 LN:11998 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71834__1_contigs__length_41452 LN:41452 skipping SAM header line: @SQ SN:PGA_scaffold71841__1_contigs__length_19348 LN:19348 skipping SAM header line: @SQ SN:PGA_scaffold71848__1_contigs__length_16760 LN:16760 skipping SAM header line: @SQ SN:PGA_scaffold71849__1_contigs__length_11165 LN:11165 skipping SAM header line: @SQ SN:PGA_scaffold71850__1_contigs__length_15924 LN:15924 skipping SAM header line: @SQ SN:PGA_scaffold71851__1_contigs__length_12495 LN:12495 skipping SAM header line: @SQ SN:PGA_scaffold71852__1_contigs__length_11557 LN:11557 skipping SAM header line: @SQ SN:PGA_scaffold71860__1_contigs__length_59628 LN:59628 skipping SAM header line: @SQ SN:PGA_scaffold71861__1_contigs__length_58668 LN:58668 skipping SAM header line: @SQ SN:PGA_scaffold71862__1_contigs__length_15757 LN:15757 skipping SAM header line: @SQ SN:PGA_scaffold71863__1_contigs__length_12604 LN:12604 skipping SAM header line: @SQ SN:PGA_scaffold71868__1_contigs__length_12120 LN:12120 skipping SAM header line: @SQ SN:PGA_scaffold71870__1_contigs__length_62386 LN:62386 skipping SAM header line: @SQ SN:PGA_scaffold71875__1_contigs__length_11701 LN:11701 skipping SAM header line: @SQ SN:PGA_scaffold71876__1_contigs__length_78251 LN:78251 skipping SAM header line: @SQ SN:PGA_scaffold71877__1_contigs__length_11414 LN:11414 skipping SAM header line: @SQ SN:PGA_scaffold71882__1_contigs__length_17939 LN:17939 skipping SAM header line: @SQ SN:PGA_scaffold71888__1_contigs__length_24395 LN:24395 skipping SAM header line: @SQ SN:PGA_scaffold71890__1_contigs__length_10222 LN:10222 skipping SAM header line: @SQ SN:PGA_scaffold71891__1_contigs__length_32235 LN:32235 skipping SAM header line: @SQ SN:PGA_scaffold71897__1_contigs__length_31037 LN:31037 skipping SAM header line: @SQ SN:PGA_scaffold71898__1_contigs__length_11786 LN:11786 skipping SAM header line: @SQ SN:PGA_scaffold71900__1_contigs__length_18534 LN:18534 skipping SAM header line: @SQ SN:PGA_scaffold71902__1_contigs__length_12828 LN:12828 skipping SAM header line: @SQ SN:PGA_scaffold71903__1_contigs__length_13441 LN:13441 skipping SAM header line: @SQ SN:PGA_scaffold71908__1_contigs__length_21329 LN:21329 skipping SAM header line: @SQ SN:PGA_scaffold71912__1_contigs__length_30188 LN:30188 skipping SAM header line: @SQ SN:PGA_scaffold71917__1_contigs__length_23422 LN:23422 skipping SAM header line: @SQ SN:PGA_scaffold71918__1_contigs__length_15315 LN:15315 skipping SAM header line: @SQ SN:PGA_scaffold71924__1_contigs__length_15317 LN:15317 skipping SAM header line: @SQ SN:PGA_scaffold71926__1_contigs__length_13958 LN:13958 skipping SAM header line: @SQ SN:PGA_scaffold71927__1_contigs__length_14177 LN:14177 skipping SAM header line: @SQ SN:PGA_scaffold71940__1_contigs__length_14598 LN:14598 skipping SAM header line: @SQ SN:PGA_scaffold71942__1_contigs__length_31503 LN:31503 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71993__1_contigs__length_39379 LN:39379 skipping SAM header line: @SQ SN:PGA_scaffold71995__1_contigs__length_18438 LN:18438 skipping SAM header line: @SQ SN:PGA_scaffold72007__1_contigs__length_17993 LN:17993 skipping SAM header line: @SQ SN:PGA_scaffold72010__1_contigs__length_13717 LN:13717 skipping SAM header line: @SQ SN:PGA_scaffold72019__1_contigs__length_13265 LN:13265 skipping SAM header line: @SQ SN:PGA_scaffold72024__1_contigs__length_26465 LN:26465 skipping SAM header line: @SQ SN:PGA_scaffold72039__1_contigs__length_15920 LN:15920 skipping SAM header line: @SQ SN:PGA_scaffold72043__1_contigs__length_13913 LN:13913 skipping SAM header line: @SQ SN:PGA_scaffold72046__1_contigs__length_13172 LN:13172 skipping SAM header line: @SQ SN:PGA_scaffold72048__1_contigs__length_41282 LN:41282 skipping SAM header line: @SQ SN:PGA_scaffold72049__1_contigs__length_18357 LN:18357 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72089__1_contigs__length_18781 LN:18781 skipping SAM header line: @SQ SN:PGA_scaffold72098__1_contigs__length_32300 LN:32300 skipping SAM header line: @SQ SN:PGA_scaffold72102__1_contigs__length_48320 LN:48320 skipping SAM header line: @SQ SN:PGA_scaffold72105__1_contigs__length_15735 LN:15735 skipping SAM header line: @SQ SN:PGA_scaffold72110__1_contigs__length_29824 LN:29824 skipping SAM header line: @SQ SN:PGA_scaffold72116__1_contigs__length_14908 LN:14908 skipping SAM header line: @SQ SN:PGA_scaffold72119__1_contigs__length_24686 LN:24686 skipping SAM header line: @SQ SN:PGA_scaffold72122__1_contigs__length_20058 LN:20058 skipping SAM header line: @SQ SN:PGA_scaffold72124__1_contigs__length_40033 LN:40033 skipping SAM header line: @SQ SN:PGA_scaffold72126__1_contigs__length_39352 LN:39352 skipping SAM header line: @SQ SN:PGA_scaffold72134__1_contigs__length_14534 LN:14534 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72185__1_contigs__length_19085 LN:19085 skipping SAM header line: @SQ SN:PGA_scaffold72190__1_contigs__length_16709 LN:16709 skipping SAM header line: @SQ SN:PGA_scaffold72191__1_contigs__length_12395 LN:12395 skipping SAM header line: @SQ SN:PGA_scaffold72192__1_contigs__length_36706 LN:36706 skipping SAM header line: @SQ SN:PGA_scaffold72203__1_contigs__length_32495 LN:32495 skipping SAM header line: @SQ SN:PGA_scaffold72206__1_contigs__length_15328 LN:15328 skipping SAM header line: @SQ SN:PGA_scaffold72212__1_contigs__length_13408 LN:13408 skipping SAM header line: @SQ SN:PGA_scaffold72213__1_contigs__length_50541 LN:50541 skipping SAM header line: @SQ SN:PGA_scaffold72217__1_contigs__length_10815 LN:10815 skipping SAM header line: @SQ SN:PGA_scaffold72225__1_contigs__length_34829 LN:34829 skipping SAM header line: @SQ SN:PGA_scaffold72226__1_contigs__length_26913 LN:26913 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72453__1_contigs__length_31506 LN:31506 skipping SAM header line: @SQ SN:PGA_scaffold72460__1_contigs__length_11913 LN:11913 skipping SAM header line: @SQ SN:PGA_scaffold72461__1_contigs__length_14963 LN:14963 skipping SAM header line: @SQ SN:PGA_scaffold72465__1_contigs__length_21329 LN:21329 skipping SAM header line: @SQ SN:PGA_scaffold72466__1_contigs__length_13091 LN:13091 skipping SAM header line: @SQ SN:PGA_scaffold72472__1_contigs__length_14999 LN:14999 skipping SAM header line: @SQ SN:PGA_scaffold72474__1_contigs__length_25323 LN:25323 skipping SAM header line: @SQ SN:PGA_scaffold72475__1_contigs__length_16776 LN:16776 skipping SAM header line: @SQ SN:PGA_scaffold72477__1_contigs__length_23151 LN:23151 skipping SAM header line: @SQ SN:PGA_scaffold72480__1_contigs__length_68331 LN:68331 skipping SAM header line: @SQ SN:PGA_scaffold72481__1_contigs__length_33703 LN:33703 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72735__1_contigs__length_16712 LN:16712 skipping SAM header line: @SQ SN:PGA_scaffold72740__1_contigs__length_15969 LN:15969 skipping SAM header line: @SQ SN:PGA_scaffold72744__1_contigs__length_13153 LN:13153 skipping SAM header line: @SQ SN:PGA_scaffold72746__1_contigs__length_14314 LN:14314 skipping SAM header line: @SQ SN:PGA_scaffold72747__1_contigs__length_23008 LN:23008 skipping SAM header line: @SQ SN:PGA_scaffold72749__1_contigs__length_17244 LN:17244 skipping SAM header line: @SQ SN:PGA_scaffold72750__1_contigs__length_35341 LN:35341 skipping SAM header line: @SQ SN:PGA_scaffold72756__1_contigs__length_19201 LN:19201 skipping SAM header line: @SQ SN:PGA_scaffold72758__1_contigs__length_10979 LN:10979 skipping SAM header line: @SQ SN:PGA_scaffold72761__1_contigs__length_17671 LN:17671 skipping SAM header line: @SQ SN:PGA_scaffold72768__1_contigs__length_11630 LN:11630 skipping SAM header line: @SQ SN:PGA_scaffold72771__1_contigs__length_32509 LN:32509 skipping SAM header line: @SQ SN:PGA_scaffold72772__1_contigs__length_19374 LN:19374 skipping SAM header line: @SQ SN:PGA_scaffold72773__1_contigs__length_15100 LN:15100 skipping SAM header line: @SQ SN:PGA_scaffold72778__1_contigs__length_21245 LN:21245 skipping SAM header line: @SQ SN:PGA_scaffold72781__1_contigs__length_40297 LN:40297 skipping SAM header line: @SQ SN:PGA_scaffold72783__1_contigs__length_18885 LN:18885 skipping SAM header line: @SQ SN:PGA_scaffold72788__1_contigs__length_17171 LN:17171 skipping SAM header line: @SQ SN:PGA_scaffold72789__1_contigs__length_13441 LN:13441 skipping SAM header line: @SQ SN:PGA_scaffold72790__1_contigs__length_10027 LN:10027 skipping SAM header line: @SQ SN:PGA_scaffold72792__1_contigs__length_12339 LN:12339 skipping SAM header line: @SQ SN:PGA_scaffold72793__1_contigs__length_19007 LN:19007 skipping SAM header line: @SQ SN:PGA_scaffold72794__1_contigs__length_10039 LN:10039 skipping SAM header line: @SQ SN:PGA_scaffold72803__1_contigs__length_11768 LN:11768 skipping SAM header line: @SQ SN:PGA_scaffold72804__1_contigs__length_26320 LN:26320 skipping SAM header line: @SQ SN:PGA_scaffold72805__1_contigs__length_14993 LN:14993 skipping SAM header line: @SQ SN:PGA_scaffold72806__1_contigs__length_10865 LN:10865 skipping SAM header line: @SQ SN:PGA_scaffold72807__1_contigs__length_16250 LN:16250 skipping SAM header line: @SQ SN:PGA_scaffold72810__1_contigs__length_13983 LN:13983 skipping SAM header line: @SQ SN:PGA_scaffold72815__1_contigs__length_19845 LN:19845 skipping SAM header line: @SQ SN:PGA_scaffold72822__1_contigs__length_12664 LN:12664 skipping SAM header line: @SQ SN:PGA_scaffold72823__1_contigs__length_12628 LN:12628 skipping SAM header line: @SQ SN:PGA_scaffold72827__1_contigs__length_12904 LN:12904 skipping SAM header line: @SQ SN:PGA_scaffold72828__1_contigs__length_22893 LN:22893 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72869__1_contigs__length_20837 LN:20837 skipping SAM header line: @SQ SN:PGA_scaffold72878__1_contigs__length_20834 LN:20834 skipping SAM header line: @SQ SN:PGA_scaffold72881__1_contigs__length_10467 LN:10467 skipping SAM header line: @SQ SN:PGA_scaffold72887__1_contigs__length_13581 LN:13581 skipping SAM header line: @SQ SN:PGA_scaffold72891__1_contigs__length_11200 LN:11200 skipping SAM header line: @SQ SN:PGA_scaffold72902__1_contigs__length_16537 LN:16537 skipping SAM header line: @SQ SN:PGA_scaffold72904__1_contigs__length_12276 LN:12276 skipping SAM header line: @SQ SN:PGA_scaffold72905__1_contigs__length_19604 LN:19604 skipping SAM header line: @SQ SN:PGA_scaffold72908__1_contigs__length_13785 LN:13785 skipping SAM header line: @SQ SN:PGA_scaffold72911__1_contigs__length_24332 LN:24332 skipping SAM header line: @SQ SN:PGA_scaffold72912__1_contigs__length_17608 LN:17608 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72956__1_contigs__length_10117 LN:10117 skipping SAM header line: @SQ SN:PGA_scaffold72957__1_contigs__length_19615 LN:19615 skipping SAM header line: @SQ SN:PGA_scaffold72961__1_contigs__length_10449 LN:10449 skipping SAM header line: @SQ SN:PGA_scaffold72971__1_contigs__length_35934 LN:35934 skipping SAM header line: @SQ SN:PGA_scaffold72983__1_contigs__length_11856 LN:11856 skipping SAM header line: @SQ SN:PGA_scaffold72989__1_contigs__length_17091 LN:17091 skipping SAM header line: @SQ SN:PGA_scaffold72994__1_contigs__length_10115 LN:10115 skipping SAM header line: @SQ SN:PGA_scaffold72998__1_contigs__length_10144 LN:10144 skipping SAM header line: @SQ SN:PGA_scaffold73005__1_contigs__length_17341 LN:17341 skipping SAM header line: @SQ SN:PGA_scaffold73006__1_contigs__length_13189 LN:13189 skipping SAM header line: @SQ SN:PGA_scaffold73010__1_contigs__length_40655 LN:40655 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold73149__1_contigs__length_10400 LN:10400 skipping SAM header line: @SQ SN:PGA_scaffold73152__1_contigs__length_13936 LN:13936 skipping SAM header line: @SQ SN:PGA_scaffold73155__1_contigs__length_14056 LN:14056 skipping SAM header line: @SQ SN:PGA_scaffold73156__1_contigs__length_14569 LN:14569 skipping SAM header line: @SQ SN:PGA_scaffold73158__1_contigs__length_10878 LN:10878 skipping SAM header line: @SQ SN:PGA_scaffold73165__1_contigs__length_20130 LN:20130 skipping SAM header line: @SQ SN:PGA_scaffold73169__1_contigs__length_14650 LN:14650 skipping SAM header line: @SQ SN:PGA_scaffold73170__1_contigs__length_10692 LN:10692 skipping SAM header line: @SQ SN:PGA_scaffold73171__1_contigs__length_10991 LN:10991 skipping SAM header line: @SQ SN:PGA_scaffold73173__1_contigs__length_16486 LN:16486 skipping SAM header line: @SQ SN:PGA_scaffold73174__1_contigs__length_18683 LN:18683 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold74016__1_contigs__length_11492 LN:11492 skipping SAM header line: @SQ SN:PGA_scaffold74017__1_contigs__length_32278 LN:32278 skipping SAM header line: @SQ SN:PGA_scaffold74018__1_contigs__length_32278 LN:32278 skipping SAM header line: @SQ SN:PGA_scaffold74019__1_contigs__length_11492 LN:11492 skipping SAM header line: @SQ SN:PGA_scaffold74022__1_contigs__length_20310 LN:20310 skipping SAM header line: @SQ SN:PGA_scaffold74023__1_contigs__length_10045 LN:10045 skipping SAM header line: @SQ SN:PGA_scaffold74024__1_contigs__length_20081 LN:20081 skipping SAM header line: @SQ SN:PGA_scaffold74026__1_contigs__length_19351 LN:19351 skipping SAM header line: @SQ SN:PGA_scaffold74034__1_contigs__length_20310 LN:20310 skipping SAM header line: @SQ SN:PGA_scaffold74035__1_contigs__length_10045 LN:10045 skipping SAM header line: @SQ SN:PGA_scaffold74036__1_contigs__length_20081 LN:20081 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold75866__1_contigs__length_16815 LN:16815 skipping SAM header line: @SQ SN:PGA_scaffold75872__1_contigs__length_16815 LN:16815 skipping SAM header line: @SQ SN:PGA_scaffold75902__1_contigs__length_12473 LN:12473 skipping SAM header line: @SQ SN:PGA_scaffold75903__1_contigs__length_12496 LN:12496 skipping SAM header line: @SQ SN:PGA_scaffold75904__1_contigs__length_11957 LN:11957 skipping SAM header line: @SQ SN:PGA_scaffold75905__1_contigs__length_11958 LN:11958 skipping SAM header line: @SQ SN:PGA_scaffold76072__1_contigs__length_10250 LN:10250 skipping SAM header line: @SQ SN:PGA_scaffold76074__1_contigs__length_10453 LN:10453 skipping SAM header line: @SQ SN:PGA_scaffold76076__1_contigs__length_10250 LN:10250 skipping SAM header line: @SQ SN:PGA_scaffold76078__1_contigs__length_10453 LN:10453 skipping SAM header line: @SQ SN:PGA_scaffold76166__1_contigs__length_39785 LN:39785 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold76501__1_contigs__length_12869 LN:12869 skipping SAM header line: @SQ SN:PGA_scaffold76728__1_contigs__length_11301 LN:11301 skipping SAM header line: @SQ SN:PGA_scaffold76729__1_contigs__length_11301 LN:11301 skipping SAM header line: @SQ SN:PGA_scaffold76731__1_contigs__length_14025 LN:14025 skipping SAM header line: @SQ SN:PGA_scaffold76734__1_contigs__length_14025 LN:14025 skipping SAM header line: @SQ SN:PGA_scaffold76860__1_contigs__length_10316 LN:10316 skipping SAM header line: @SQ SN:PGA_scaffold76867__1_contigs__length_10316 LN:10316 skipping SAM header line: @SQ SN:PGA_scaffold77038__1_contigs__length_16900 LN:16900 skipping SAM header line: @SQ SN:PGA_scaffold77039__1_contigs__length_16900 LN:16900 skipping SAM header line: @SQ SN:PGA_scaffold77040__1_contigs__length_16993 LN:16993 skipping SAM header line: @SQ SN:PGA_scaffold77041__1_contigs__length_16993 LN:16993 skipping SAM header line: @SQ SN:PGA_scaffold77054__1_contigs__length_10799 LN:10799 skipping SAM header line: @SQ SN:PGA_scaffold77055__1_contigs__length_10799 LN:10799 skipping SAM header line: @SQ SN:PGA_scaffold77058__1_contigs__length_12635 LN:12635 skipping SAM header line: @SQ SN:PGA_scaffold77059__1_contigs__length_12635 LN:12635 skipping SAM header line: @SQ SN:PGA_scaffold77062__1_contigs__length_10799 LN:10799 skipping SAM header line: @SQ SN:PGA_scaffold77063__1_contigs__length_10799 LN:10799 skipping SAM header line: @SQ SN:PGA_scaffold77064__1_contigs__length_12662 LN:12662 skipping SAM header line: @SQ SN:PGA_scaffold77065__1_contigs__length_12662 LN:12662 skipping SAM header line: @SQ SN:PGA_scaffold77082__1_contigs__length_17599 LN:17599 skipping SAM header line: @SQ SN:PGA_scaffold77083__1_contigs__length_17599 LN:17599 skipping SAM header line: @SQ SN:PGA_scaffold77084__1_contigs__length_17405 LN:17405 skipping SAM header line: @SQ SN:PGA_scaffold77085__1_contigs__length_17405 LN:17405 skipping SAM header line: @SQ SN:PGA_scaffold77434__1_contigs__length_17214 LN:17214 skipping SAM header line: @SQ SN:PGA_scaffold77435__1_contigs__length_17214 LN:17214 skipping SAM header line: @SQ SN:PGA_scaffold77438__1_contigs__length_11807 LN:11807 skipping SAM header line: @SQ SN:PGA_scaffold77439__1_contigs__length_11807 LN:11807 skipping SAM header line: @SQ SN:PGA_scaffold77446__1_contigs__length_11093 LN:11093 skipping SAM header line: @SQ SN:PGA_scaffold77448__1_contigs__length_11877 LN:11877 skipping SAM header line: @SQ SN:PGA_scaffold77450__1_contigs__length_11093 LN:11093 skipping SAM header line: @SQ SN:PGA_scaffold77452__1_contigs__length_11877 LN:11877 skipping SAM header line: @SQ SN:PGA_scaffold77598__1_contigs__length_14627 LN:14627 skipping SAM header line: @SQ SN:PGA_scaffold77599__1_contigs__length_14627 LN:14627 skipping SAM header line: @SQ SN:PGA_scaffold77704__1_contigs__length_14711 LN:14711 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold78101__1_contigs__length_10380 LN:10380 skipping SAM header line: @SQ SN:PGA_scaffold78102__1_contigs__length_13875 LN:13875 skipping SAM header line: @SQ SN:PGA_scaffold78105__1_contigs__length_13875 LN:13875 skipping SAM header line: @SQ SN:PGA_scaffold78182__1_contigs__length_23159 LN:23159 skipping SAM header line: @SQ SN:PGA_scaffold78183__1_contigs__length_23159 LN:23159 skipping SAM header line: @SQ SN:PGA_scaffold78200__1_contigs__length_16070 LN:16070 skipping SAM header line: @SQ SN:PGA_scaffold78203__1_contigs__length_16070 LN:16070 skipping SAM header line: @SQ SN:PGA_scaffold78291__1_contigs__length_15051 LN:15051 skipping SAM header line: @SQ SN:PGA_scaffold78294__1_contigs__length_15051 LN:15051 skipping SAM header line: @SQ SN:PGA_scaffold78376__1_contigs__length_11229 LN:11229 skipping SAM header line: @SQ SN:PGA_scaffold78377__1_contigs__length_11229 LN:11229 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold78678__1_contigs__length_16417 LN:16417 skipping SAM header line: @SQ SN:PGA_scaffold78679__1_contigs__length_16408 LN:16408 skipping SAM header line: @SQ SN:PGA_scaffold78680__1_contigs__length_16417 LN:16417 skipping SAM header line: @SQ SN:PGA_scaffold78681__1_contigs__length_16408 LN:16408 skipping SAM header line: @SQ SN:PGA_scaffold78682__1_contigs__length_12627 LN:12627 skipping SAM header line: @SQ SN:PGA_scaffold78683__1_contigs__length_11054 LN:11054 skipping SAM header line: @SQ SN:PGA_scaffold78684__1_contigs__length_12627 LN:12627 skipping SAM header line: @SQ SN:PGA_scaffold78685__1_contigs__length_11054 LN:11054 skipping SAM header line: @SQ SN:PGA_scaffold78686__1_contigs__length_16012 LN:16012 skipping SAM header line: @SQ SN:PGA_scaffold78692__1_contigs__length_16012 LN:16012 skipping SAM header line: @SQ SN:PGA_scaffold78864__1_contigs__length_15717 LN:15717 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold79307__1_contigs__length_12224 LN:12224 skipping SAM header line: @SQ SN:PGA_scaffold79402__1_contigs__length_47506 LN:47506 skipping SAM header line: @SQ SN:PGA_scaffold79403__1_contigs__length_47506 LN:47506 skipping SAM header line: @SQ SN:PGA_scaffold79404__1_contigs__length_47487 LN:47487 skipping SAM header line: @SQ SN:PGA_scaffold79405__1_contigs__length_47487 LN:47487 skipping SAM header line: @SQ SN:PGA_scaffold79406__1_contigs__length_19287 LN:19287 skipping SAM header line: @SQ SN:PGA_scaffold79407__1_contigs__length_19287 LN:19287 skipping SAM header line: @SQ SN:PGA_scaffold79408__1_contigs__length_19290 LN:19290 skipping SAM header line: @SQ SN:PGA_scaffold79413__1_contigs__length_19290 LN:19290 skipping SAM header line: @SQ SN:PGA_scaffold79432__1_contigs__length_10096 LN:10096 skipping SAM header line: @SQ SN:PGA_scaffold79433__1_contigs__length_10096 LN:10096 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold81124__1_contigs__length_13078 LN:13078 skipping SAM header line: @SQ SN:PGA_scaffold81130__1_contigs__length_12316 LN:12316 skipping SAM header line: @SQ SN:PGA_scaffold81131__1_contigs__length_12316 LN:12316 skipping SAM header line: @SQ SN:PGA_scaffold81166__1_contigs__length_11656 LN:11656 skipping SAM header line: @SQ SN:PGA_scaffold81170__1_contigs__length_11656 LN:11656 skipping SAM header line: @SQ SN:PGA_scaffold81196__1_contigs__length_19591 LN:19591 skipping SAM header line: @SQ SN:PGA_scaffold81197__1_contigs__length_19591 LN:19591 skipping SAM header line: @SQ SN:PGA_scaffold81198__1_contigs__length_30077 LN:30077 skipping SAM header line: @SQ SN:PGA_scaffold81199__1_contigs__length_30077 LN:30077 skipping SAM header line: @SQ SN:PGA_scaffold81203__1_contigs__length_12954 LN:12954 skipping SAM header line: @SQ SN:PGA_scaffold81209__1_contigs__length_12954 LN:12954 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold81878__1_contigs__length_13078 LN:13078 skipping SAM header line: @SQ SN:PGA_scaffold81881__1_contigs__length_11532 LN:11532 skipping SAM header line: @SQ SN:PGA_scaffold81882__1_contigs__length_13078 LN:13078 skipping SAM header line: @SQ SN:PGA_scaffold81962__1_contigs__length_12002 LN:12002 skipping SAM header line: @SQ SN:PGA_scaffold81963__1_contigs__length_12002 LN:12002 skipping SAM header line: @SQ SN:PGA_scaffold82246__1_contigs__length_12000 LN:12000 skipping SAM header line: @SQ SN:PGA_scaffold82249__1_contigs__length_12000 LN:12000 skipping SAM header line: @SQ SN:PGA_scaffold82382__1_contigs__length_12843 LN:12843 skipping SAM header line: @SQ SN:PGA_scaffold82383__1_contigs__length_12843 LN:12843 skipping SAM header line: @SQ SN:PGA_scaffold82384__1_contigs__length_12588 LN:12588 skipping SAM header line: @SQ SN:PGA_scaffold82385__1_contigs__length_12588 LN:12588 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold82810__1_contigs__length_12871 LN:12871 skipping SAM header line: @SQ SN:PGA_scaffold82815__1_contigs__length_12871 LN:12871 skipping SAM header line: @SQ SN:PGA_scaffold82842__1_contigs__length_39037 LN:39037 skipping SAM header line: @SQ SN:PGA_scaffold82843__1_contigs__length_39038 LN:39038 skipping SAM header line: @SQ SN:PGA_scaffold82844__1_contigs__length_39037 LN:39037 skipping SAM header line: @SQ SN:PGA_scaffold82845__1_contigs__length_39038 LN:39038 skipping SAM header line: @SQ SN:PGA_scaffold82846__1_contigs__length_30206 LN:30206 skipping SAM header line: @SQ SN:PGA_scaffold82847__1_contigs__length_30206 LN:30206 skipping SAM header line: @SQ SN:PGA_scaffold82848__1_contigs__length_19717 LN:19717 skipping SAM header line: @SQ SN:PGA_scaffold82849__1_contigs__length_19717 LN:19717 skipping SAM header line: @SQ SN:PGA_scaffold82851__1_contigs__length_22511 LN:22511 skipping SAM header line: @SQ SN:PGA_scaffold82852__1_contigs__length_11326 LN:11326 skipping SAM header line: @SQ SN:PGA_scaffold82853__1_contigs__length_19766 LN:19766 skipping SAM header line: @SQ SN:PGA_scaffold82854__1_contigs__length_22515 LN:22515 skipping SAM header line: @SQ SN:PGA_scaffold82855__1_contigs__length_11735 LN:11735 skipping SAM header line: @SQ SN:PGA_scaffold82856__1_contigs__length_18962 LN:18962 skipping SAM header line: @SQ SN:PGA_scaffold82858__1_contigs__length_22511 LN:22511 skipping SAM header line: @SQ SN:PGA_scaffold82859__1_contigs__length_11326 LN:11326 skipping SAM header line: @SQ SN:PGA_scaffold82860__1_contigs__length_19766 LN:19766 skipping SAM header line: @SQ SN:PGA_scaffold82861__1_contigs__length_22515 LN:22515 skipping SAM header line: @SQ SN:PGA_scaffold82862__1_contigs__length_11735 LN:11735 skipping SAM header line: @SQ SN:PGA_scaffold82863__1_contigs__length_18962 LN:18962 skipping SAM header line: @SQ SN:PGA_scaffold82956__1_contigs__length_15197 LN:15197 skipping SAM header line: @SQ SN:PGA_scaffold82957__1_contigs__length_15197 LN:15197 skipping SAM header line: @SQ SN:PGA_scaffold82960__1_contigs__length_11580 LN:11580 skipping SAM header line: @SQ SN:PGA_scaffold82961__1_contigs__length_11580 LN:11580 skipping SAM header line: @SQ SN:PGA_scaffold83199__1_contigs__length_14837 LN:14837 skipping SAM header line: @SQ SN:PGA_scaffold83200__1_contigs__length_11530 LN:11530 skipping SAM header line: @SQ SN:PGA_scaffold83202__1_contigs__length_14837 LN:14837 skipping SAM header line: @SQ SN:PGA_scaffold83203__1_contigs__length_11530 LN:11530 skipping SAM header line: @SQ SN:PGA_scaffold83406__1_contigs__length_10388 LN:10388 skipping SAM header line: @SQ SN:PGA_scaffold83407__1_contigs__length_10388 LN:10388 skipping SAM header line: @SQ SN:PGA_scaffold83718__1_contigs__length_30091 LN:30091 skipping SAM header line: @SQ SN:PGA_scaffold83719__1_contigs__length_30091 LN:30091 skipping SAM header line: @SQ SN:PGA_scaffold83720__1_contigs__length_18045 LN:18045 skipping SAM header line: @SQ SN:PGA_scaffold83721__1_contigs__length_18045 LN:18045 skipping SAM header line: @SQ SN:PGA_scaffold83722__1_contigs__length_23648 LN:23648 skipping SAM header line: @SQ SN:PGA_scaffold83723__1_contigs__length_23648 LN:23648 skipping SAM header line: @SQ SN:PGA_scaffold83730__1_contigs__length_18045 LN:18045 skipping SAM header line: @SQ SN:PGA_scaffold83731__1_contigs__length_18045 LN:18045 skipping SAM header line: @SQ SN:PGA_scaffold83732__1_contigs__length_30091 LN:30091 skipping SAM header line: @SQ SN:PGA_scaffold83733__1_contigs__length_30091 LN:30091 skipping SAM header line: @SQ SN:PGA_scaffold83802__1_contigs__length_12437 LN:12437 skipping SAM header line: @SQ SN:PGA_scaffold83803__1_contigs__length_11738 LN:11738 skipping SAM header line: @SQ SN:PGA_scaffold83804__1_contigs__length_11738 LN:11738 skipping SAM header line: @SQ SN:PGA_scaffold83805__1_contigs__length_12437 LN:12437 skipping SAM header line: @SQ SN:PGA_scaffold83818__1_contigs__length_12437 LN:12437 skipping SAM header line: @SQ SN:PGA_scaffold83819__1_contigs__length_11738 LN:11738 skipping SAM header line: @SQ SN:PGA_scaffold83820__1_contigs__length_11738 LN:11738 skipping SAM header line: @SQ SN:PGA_scaffold83821__1_contigs__length_12437 LN:12437 skipping SAM header line: @SQ SN:PGA_scaffold84078__1_contigs__length_19757 LN:19757 skipping SAM header line: @SQ SN:PGA_scaffold84079__1_contigs__length_19757 LN:19757 skipping SAM header line: @SQ SN:PGA_scaffold84080__1_contigs__length_19562 LN:19562 skipping SAM header line: @SQ SN:PGA_scaffold84083__1_contigs__length_19562 LN:19562 skipping SAM header line: @SQ SN:PGA_scaffold84100__1_contigs__length_11432 LN:11432 skipping SAM header line: @SQ SN:PGA_scaffold84102__1_contigs__length_15369 LN:15369 skipping SAM header line: @SQ SN:PGA_scaffold84103__1_contigs__length_11432 LN:11432 skipping SAM header line: @SQ SN:PGA_scaffold84105__1_contigs__length_15369 LN:15369 skipping SAM header line: @SQ SN:PGA_scaffold84110__1_contigs__length_11432 LN:11432 skipping SAM header line: @SQ SN:PGA_scaffold84112__1_contigs__length_15369 LN:15369 skipping SAM header line: @SQ SN:PGA_scaffold84113__1_contigs__length_11432 LN:11432 skipping SAM header line: @SQ SN:PGA_scaffold84115__1_contigs__length_15369 LN:15369 skipping SAM header line: @SQ SN:PGA_scaffold84134__1_contigs__length_23648 LN:23648 skipping SAM header line: @SQ SN:PGA_scaffold84135__1_contigs__length_23648 LN:23648 skipping SAM header line: @SQ SN:PGA_scaffold84458__1_contigs__length_10934 LN:10934 skipping SAM header line: @SQ SN:PGA_scaffold84459__1_contigs__length_10934 LN:10934 skipping SAM header line: @SQ SN:PGA_scaffold84538__1_contigs__length_11062 LN:11062 skipping SAM header line: @SQ SN:PGA_scaffold84539__1_contigs__length_16065 LN:16065 skipping SAM header line: @SQ SN:PGA_scaffold84540__1_contigs__length_11062 LN:11062 skipping SAM header line: @SQ SN:PGA_scaffold84541__1_contigs__length_16065 LN:16065 skipping SAM header line: @SQ SN:PGA_scaffold84566__1_contigs__length_12424 LN:12424 skipping SAM header line: @SQ SN:PGA_scaffold84567__1_contigs__length_12424 LN:12424 skipping SAM header line: @SQ SN:PGA_scaffold84570__1_contigs__length_34138 LN:34138 skipping SAM header line: @SQ SN:PGA_scaffold84571__1_contigs__length_34138 LN:34138 skipping SAM header line: @SQ SN:PGA_scaffold84573__1_contigs__length_23033 LN:23033 skipping SAM header line: @SQ SN:PGA_scaffold84574__1_contigs__length_23033 LN:23033 skipping SAM header line: @SQ SN:PGA_scaffold84712__1_contigs__length_11604 LN:11604 skipping SAM header line: @SQ SN:PGA_scaffold84713__1_contigs__length_10236 LN:10236 skipping SAM header line: @SQ SN:PGA_scaffold84716__1_contigs__length_11604 LN:11604 skipping SAM header line: @SQ SN:PGA_scaffold84717__1_contigs__length_10236 LN:10236 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold85097__1_contigs__length_14113 LN:14113 skipping SAM header line: @SQ SN:PGA_scaffold85098__1_contigs__length_14113 LN:14113 skipping SAM header line: @SQ SN:PGA_scaffold85258__1_contigs__length_10703 LN:10703 skipping SAM header line: @SQ SN:PGA_scaffold85259__1_contigs__length_10863 LN:10863 skipping SAM header line: @SQ SN:PGA_scaffold85265__1_contigs__length_10703 LN:10703 skipping SAM header line: @SQ SN:PGA_scaffold85266__1_contigs__length_10863 LN:10863 skipping SAM header line: @SQ SN:PGA_scaffold85304__1_contigs__length_10703 LN:10703 skipping SAM header line: @SQ SN:PGA_scaffold85305__1_contigs__length_10863 LN:10863 skipping SAM header line: @SQ SN:PGA_scaffold85311__1_contigs__length_10703 LN:10703 skipping SAM header line: @SQ SN:PGA_scaffold85312__1_contigs__length_10863 LN:10863 skipping SAM header line: @SQ SN:PGA_scaffold85323__1_contigs__length_10602 LN:10602 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold85594__1_contigs__length_15462 LN:15462 skipping SAM header line: @SQ SN:PGA_scaffold85595__1_contigs__length_10408 LN:10408 skipping SAM header line: @SQ SN:PGA_scaffold85598__1_contigs__length_10408 LN:10408 skipping SAM header line: @SQ SN:PGA_scaffold85703__1_contigs__length_10408 LN:10408 skipping SAM header line: @SQ SN:PGA_scaffold85704__1_contigs__length_10408 LN:10408 skipping SAM header line: @SQ SN:PGA_scaffold85705__1_contigs__length_15462 LN:15462 skipping SAM header line: @SQ SN:PGA_scaffold85708__1_contigs__length_15462 LN:15462 skipping SAM header line: @SQ SN:PGA_scaffold85719__1_contigs__length_10311 LN:10311 skipping SAM header line: @SQ SN:PGA_scaffold85720__1_contigs__length_10311 LN:10311 skipping SAM header line: @SQ SN:PGA_scaffold85735__1_contigs__length_17578 LN:17578 skipping SAM header line: @SQ SN:PGA_scaffold85736__1_contigs__length_17578 LN:17578 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold86301__1_contigs__length_11559 LN:11559 skipping SAM header line: @SQ SN:PGA_scaffold86302__1_contigs__length_11559 LN:11559 skipping SAM header line: @SQ SN:PGA_scaffold86455__1_contigs__length_10771 LN:10771 skipping SAM header line: @SQ SN:PGA_scaffold86456__1_contigs__length_10771 LN:10771 skipping SAM header line: @SQ SN:PGA_scaffold86463__1_contigs__length_13654 LN:13654 skipping SAM header line: @SQ SN:PGA_scaffold86464__1_contigs__length_13663 LN:13663 skipping SAM header line: @SQ SN:PGA_scaffold86465__1_contigs__length_13654 LN:13654 skipping SAM header line: @SQ SN:PGA_scaffold86466__1_contigs__length_13663 LN:13663 skipping SAM header line: @SQ SN:PGA_scaffold86500__1_contigs__length_10298 LN:10298 skipping SAM header line: @SQ SN:PGA_scaffold86502__1_contigs__length_10298 LN:10298 skipping SAM header line: @SQ SN:PGA_scaffold86509__1_contigs__length_10298 LN:10298 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold86647__1_contigs__length_18057 LN:18057 skipping SAM header line: @SQ SN:PGA_scaffold86669__1_contigs__length_19591 LN:19591 skipping SAM header line: @SQ SN:PGA_scaffold86670__1_contigs__length_19591 LN:19591 skipping SAM header line: @SQ SN:PGA_scaffold86671__1_contigs__length_30077 LN:30077 skipping SAM header line: @SQ SN:PGA_scaffold86672__1_contigs__length_30077 LN:30077 skipping SAM header line: @SQ SN:PGA_scaffold86675__1_contigs__length_12954 LN:12954 skipping SAM header line: @SQ SN:PGA_scaffold86682__1_contigs__length_12954 LN:12954 skipping SAM header line: @SQ SN:PGA_scaffold86749__1_contigs__length_12531 LN:12531 skipping SAM header line: @SQ SN:PGA_scaffold86750__1_contigs__length_12531 LN:12531 skipping SAM header line: @SQ SN:PGA_scaffold86751__1_contigs__length_23984 LN:23984 skipping SAM header line: @SQ SN:PGA_scaffold86752__1_contigs__length_29432 LN:29432 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold87071__1_contigs__length_17623 LN:17623 skipping SAM header line: @SQ SN:PGA_scaffold87072__1_contigs__length_17623 LN:17623 skipping SAM header line: @SQ SN:PGA_scaffold87074__1_contigs__length_10288 LN:10288 skipping SAM header line: @SQ SN:PGA_scaffold87075__1_contigs__length_10288 LN:10288 skipping SAM header line: @SQ SN:PGA_scaffold87091__1_contigs__length_17623 LN:17623 skipping SAM header line: @SQ SN:PGA_scaffold87092__1_contigs__length_17623 LN:17623 skipping SAM header line: @SQ SN:PGA_scaffold87093__1_contigs__length_10288 LN:10288 skipping SAM header line: @SQ SN:PGA_scaffold87094__1_contigs__length_10288 LN:10288 skipping SAM header line: @SQ SN:PGA_scaffold87221__1_contigs__length_16046 LN:16046 skipping SAM header line: @SQ SN:PGA_scaffold87222__1_contigs__length_16046 LN:16046 skipping SAM header line: @SQ SN:PGA_scaffold87223__1_contigs__length_16893 LN:16893 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold87578__1_contigs__length_12840 LN:12840 skipping SAM header line: @SQ SN:PGA_scaffold87581__1_contigs__length_10557 LN:10557 skipping SAM header line: @SQ SN:PGA_scaffold87585__1_contigs__length_10557 LN:10557 skipping SAM header line: @SQ SN:PGA_scaffold87687__1_contigs__length_16119 LN:16119 skipping SAM header line: @SQ SN:PGA_scaffold87688__1_contigs__length_16397 LN:16397 skipping SAM header line: @SQ SN:PGA_scaffold87689__1_contigs__length_16119 LN:16119 skipping SAM header line: @SQ SN:PGA_scaffold87690__1_contigs__length_16397 LN:16397 skipping SAM header line: @SQ SN:PGA_scaffold87729__1_contigs__length_32896 LN:32896 skipping SAM header line: @SQ SN:PGA_scaffold87730__1_contigs__length_32896 LN:32896 skipping SAM header line: @SQ SN:PGA_scaffold87731__1_contigs__length_26602 LN:26602 skipping SAM header line: @SQ SN:PGA_scaffold87732__1_contigs__length_26602 LN:26602 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold87931__1_contigs__length_38482 LN:38482 skipping SAM header line: @SQ SN:PGA_scaffold87935__1_contigs__length_38482 LN:38482 skipping SAM header line: @SQ SN:PGA_scaffold88097__1_contigs__length_12349 LN:12349 skipping SAM header line: @SQ SN:PGA_scaffold88098__1_contigs__length_12349 LN:12349 skipping SAM header line: @SQ SN:PGA_scaffold88099__1_contigs__length_12349 LN:12349 skipping SAM header line: @SQ SN:PGA_scaffold88100__1_contigs__length_12349 LN:12349 skipping SAM header line: @SQ SN:PGA_scaffold88551__1_contigs__length_10524 LN:10524 skipping SAM header line: @SQ SN:PGA_scaffold88552__1_contigs__length_10685 LN:10685 skipping SAM header line: @SQ SN:PGA_scaffold88553__1_contigs__length_10524 LN:10524 skipping SAM header line: @SQ SN:PGA_scaffold88554__1_contigs__length_10685 LN:10685 skipping SAM header line: @SQ SN:PGA_scaffold88583__1_contigs__length_12839 LN:12839 skipping SAM header line: @SQ SN:PGA_scaffold88584__1_contigs__length_12839 LN:12839 skipping SAM header line: @SQ SN:PGA_scaffold88587__1_contigs__length_10557 LN:10557 skipping SAM header line: @SQ SN:PGA_scaffold88591__1_contigs__length_10557 LN:10557 skipping SAM header line: @SQ SN:PGA_scaffold88657__1_contigs__length_12728 LN:12728 skipping SAM header line: @SQ SN:PGA_scaffold88658__1_contigs__length_12728 LN:12728 skipping SAM header line: @SQ SN:PGA_scaffold88667__1_contigs__length_16046 LN:16046 skipping SAM header line: @SQ SN:PGA_scaffold88668__1_contigs__length_16893 LN:16893 skipping SAM header line: @SQ SN:PGA_scaffold88670__1_contigs__length_16893 LN:16893 skipping SAM header line: @SQ SN:PGA_scaffold88671__1_contigs__length_16046 LN:16046 skipping SAM header line: @SQ SN:PGA_scaffold88673__1_contigs__length_16816 LN:16816 skipping SAM header line: @SQ SN:PGA_scaffold88675__1_contigs__length_12647 LN:12647 skipping SAM header line: @SQ SN:PGA_scaffold88677__1_contigs__length_16816 LN:16816 skipping SAM header line: @SQ SN:PGA_scaffold88679__1_contigs__length_12647 LN:12647 skipping SAM header line: @SQ SN:PGA_scaffold88785__1_contigs__length_12771 LN:12771 skipping SAM header line: @SQ SN:PGA_scaffold88786__1_contigs__length_13349 LN:13349 skipping SAM header line: @SQ SN:PGA_scaffold88787__1_contigs__length_13349 LN:13349 skipping SAM header line: @SQ SN:PGA_scaffold88788__1_contigs__length_12771 LN:12771 skipping SAM header line: @SQ SN:PGA_scaffold88823__1_contigs__length_10459 LN:10459 skipping SAM header line: @SQ SN:PGA_scaffold88824__1_contigs__length_10459 LN:10459 skipping SAM header line: @SQ SN:PGA_scaffold88827__1_contigs__length_12771 LN:12771 skipping SAM header line: @SQ SN:PGA_scaffold88828__1_contigs__length_12771 LN:12771 skipping SAM header line: @SQ SN:PGA_scaffold88829__1_contigs__length_13349 LN:13349 skipping SAM header line: @SQ SN:PGA_scaffold88830__1_contigs__length_13349 LN:13349 skipping SAM header line: @SQ SN:PGA_scaffold88867__1_contigs__length_11259 LN:11259 skipping SAM header line: @SQ SN:PGA_scaffold88868__1_contigs__length_10692 LN:10692 skipping SAM header line: @SQ SN:PGA_scaffold88869__1_contigs__length_11259 LN:11259 skipping SAM header line: @SQ SN:PGA_scaffold88870__1_contigs__length_10692 LN:10692 skipping SAM header line: @SQ SN:PGA_scaffold89003__1_contigs__length_10045 LN:10045 skipping SAM header line: @SQ SN:PGA_scaffold89004__1_contigs__length_10045 LN:10045 skipping SAM header line: @SQ SN:PGA_scaffold89505__1_contigs__length_13305 LN:13305 skipping SAM header line: @SQ SN:PGA_scaffold89506__1_contigs__length_13305 LN:13305 skipping SAM header line: @SQ SN:PGA_scaffold90035__1_contigs__length_10828 LN:10828 skipping SAM header line: @SQ SN:PGA_scaffold90036__1_contigs__length_10793 LN:10793 skipping SAM header line: @SQ SN:PGA_scaffold90039__1_contigs__length_10828 LN:10828 skipping SAM header line: @SQ SN:PGA_scaffold90040__1_contigs__length_10793 LN:10793 skipping SAM header line: @SQ SN:PGA_scaffold90105__1_contigs__length_14692 LN:14692 skipping SAM header line: @SQ SN:PGA_scaffold90106__1_contigs__length_14692 LN:14692 skipping SAM header line: @SQ SN:PGA_scaffold90107__1_contigs__length_20033 LN:20033 skipping SAM header line: @SQ SN:PGA_scaffold90108__1_contigs__length_20033 LN:20033 skipping SAM header line: @SQ SN:PGA_scaffold90159__1_contigs__length_13856 LN:13856 skipping SAM header line: @SQ SN:PGA_scaffold90160__1_contigs__length_12127 LN:12127 skipping SAM header line: @SQ SN:PGA_scaffold90163__1_contigs__length_13856 LN:13856 skipping SAM header line: @SQ SN:PGA_scaffold90164__1_contigs__length_12127 LN:12127 skipping SAM header line: @SQ SN:PGA_scaffold90189__1_contigs__length_11259 LN:11259 skipping SAM header line: @SQ SN:PGA_scaffold90190__1_contigs__length_10692 LN:10692 skipping SAM header line: @SQ SN:PGA_scaffold90191__1_contigs__length_11259 LN:11259 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold90632__1_contigs__length_13885 LN:13885 skipping SAM header line: @SQ SN:PGA_scaffold90665__1_contigs__length_12890 LN:12890 skipping SAM header line: @SQ SN:PGA_scaffold90666__1_contigs__length_15679 LN:15679 skipping SAM header line: @SQ SN:PGA_scaffold90671__1_contigs__length_12890 LN:12890 skipping SAM header line: @SQ SN:PGA_scaffold90672__1_contigs__length_15679 LN:15679 skipping SAM header line: @SQ SN:PGA_scaffold90725__1_contigs__length_14113 LN:14113 skipping SAM header line: @SQ SN:PGA_scaffold90726__1_contigs__length_14113 LN:14113 skipping SAM header line: @SQ SN:PGA_scaffold90803__1_contigs__length_11296 LN:11296 skipping SAM header line: @SQ SN:PGA_scaffold90804__1_contigs__length_11297 LN:11297 skipping SAM header line: @SQ SN:PGA_scaffold90805__1_contigs__length_11296 LN:11296 skipping SAM header line: @SQ SN:PGA_scaffold90806__1_contigs__length_11297 LN:11297 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold91290__1_contigs__length_14604 LN:14604 skipping SAM header line: @SQ SN:PGA_scaffold91291__1_contigs__length_14758 LN:14758 skipping SAM header line: @SQ SN:PGA_scaffold91313__1_contigs__length_10311 LN:10311 skipping SAM header line: @SQ SN:PGA_scaffold91315__1_contigs__length_10311 LN:10311 skipping SAM header line: @SQ SN:PGA_scaffold91347__1_contigs__length_12515 LN:12515 skipping SAM header line: @SQ SN:PGA_scaffold91348__1_contigs__length_12515 LN:12515 skipping SAM header line: @SQ SN:PGA_scaffold91349__1_contigs__length_19016 LN:19016 skipping SAM header line: @SQ SN:PGA_scaffold91350__1_contigs__length_19016 LN:19016 skipping SAM header line: @SQ SN:PGA_scaffold91351__1_contigs__length_22386 LN:22386 skipping SAM header line: @SQ SN:PGA_scaffold91352__1_contigs__length_22386 LN:22386 skipping SAM header line: @SQ SN:PGA_scaffold91370__1_contigs__length_14604 LN:14604 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold91712__1_contigs__length_11448 LN:11448 skipping SAM header line: @SQ SN:PGA_scaffold91713__1_contigs__length_16558 LN:16558 skipping SAM header line: @SQ SN:PGA_scaffold91714__1_contigs__length_16558 LN:16558 skipping SAM header line: @SQ SN:PGA_scaffold91715__1_contigs__length_12260 LN:12260 skipping SAM header line: @SQ SN:PGA_scaffold91716__1_contigs__length_12260 LN:12260 skipping SAM header line: @SQ SN:PGA_scaffold91757__1_contigs__length_14065 LN:14065 skipping SAM header line: @SQ SN:PGA_scaffold91758__1_contigs__length_14055 LN:14055 skipping SAM header line: @SQ SN:PGA_scaffold91759__1_contigs__length_13015 LN:13015 skipping SAM header line: @SQ SN:PGA_scaffold91760__1_contigs__length_10663 LN:10663 skipping SAM header line: @SQ SN:PGA_scaffold91764__1_contigs__length_14065 LN:14065 skipping SAM header line: @SQ SN:PGA_scaffold91765__1_contigs__length_14055 LN:14055 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold93710__1_contigs__length_17978 LN:17978 skipping SAM header line: @SQ SN:PGA_scaffold93711__1_contigs__length_16533 LN:16533 skipping SAM header line: @SQ SN:PGA_scaffold93712__1_contigs__length_16533 LN:16533 skipping SAM header line: @SQ SN:PGA_scaffold93795__1_contigs__length_12247 LN:12247 skipping SAM header line: @SQ SN:PGA_scaffold93802__1_contigs__length_12247 LN:12247 skipping SAM header line: @SQ SN:PGA_scaffold93860__1_contigs__length_10391 LN:10391 skipping SAM header line: @SQ SN:PGA_scaffold93862__1_contigs__length_10391 LN:10391 skipping SAM header line: @SQ SN:PGA_scaffold93863__1_contigs__length_17171 LN:17171 skipping SAM header line: @SQ SN:PGA_scaffold93864__1_contigs__length_17171 LN:17171 skipping SAM header line: @SQ SN:PGA_scaffold93865__1_contigs__length_17186 LN:17186 skipping SAM header line: @SQ SN:PGA_scaffold93866__1_contigs__length_13300 LN:13300 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold94697__1_contigs__length_22386 LN:22386 skipping SAM header line: @SQ SN:PGA_scaffold94698__1_contigs__length_22386 LN:22386 skipping SAM header line: @SQ SN:PGA_scaffold94723__1_contigs__length_18026 LN:18026 skipping SAM header line: @SQ SN:PGA_scaffold94726__1_contigs__length_17781 LN:17781 skipping SAM header line: @SQ SN:PGA_scaffold94729__1_contigs__length_17781 LN:17781 skipping SAM header line: @SQ SN:PGA_scaffold94730__1_contigs__length_18026 LN:18026 skipping SAM header line: @SQ SN:PGA_scaffold94788__1_contigs__length_10836 LN:10836 skipping SAM header line: @SQ SN:PGA_scaffold94791__1_contigs__length_10836 LN:10836 skipping SAM header line: @SQ SN:PGA_scaffold94821__1_contigs__length_11574 LN:11574 skipping SAM header line: @SQ SN:PGA_scaffold94822__1_contigs__length_17319 LN:17319 skipping SAM header line: @SQ SN:PGA_scaffold94823__1_contigs__length_11574 LN:11574 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold97081__1_contigs__length_10524 LN:10524 skipping SAM header line: @SQ SN:PGA_scaffold97082__1_contigs__length_10524 LN:10524 skipping SAM header line: @SQ SN:PGA_scaffold97083__1_contigs__length_10685 LN:10685 skipping SAM header line: @SQ SN:PGA_scaffold97084__1_contigs__length_10685 LN:10685 skipping SAM header line: @SQ SN:PGA_scaffold97177__1_contigs__length_22890 LN:22890 skipping SAM header line: @SQ SN:PGA_scaffold97178__1_contigs__length_22890 LN:22890 skipping SAM header line: @SQ SN:PGA_scaffold97179__1_contigs__length_37332 LN:37332 skipping SAM header line: @SQ SN:PGA_scaffold97180__1_contigs__length_22901 LN:22901 skipping SAM header line: @SQ SN:PGA_scaffold97181__1_contigs__length_41673 LN:41673 skipping SAM header line: @SQ SN:PGA_scaffold97182__1_contigs__length_37332 LN:37332 skipping SAM header line: @SQ SN:PGA_scaffold97183__1_contigs__length_22901 LN:22901 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold97495__1_contigs__length_11242 LN:11242 skipping SAM header line: @SQ SN:PGA_scaffold97614__1_contigs__length_10723 LN:10723 skipping SAM header line: @SQ SN:PGA_scaffold97618__1_contigs__length_10723 LN:10723 skipping SAM header line: @SQ SN:PGA_scaffold97796__1_contigs__length_10910 LN:10910 skipping SAM header line: @SQ SN:PGA_scaffold97803__1_contigs__length_10910 LN:10910 skipping SAM header line: @SQ SN:PGA_scaffold97954__1_contigs__length_11271 LN:11271 skipping SAM header line: @SQ SN:PGA_scaffold97958__1_contigs__length_11271 LN:11271 skipping SAM header line: @SQ SN:PGA_scaffold98123__1_contigs__length_10115 LN:10115 skipping SAM header line: @SQ SN:PGA_scaffold98124__1_contigs__length_10115 LN:10115 skipping SAM header line: @SQ SN:PGA_scaffold98147__1_contigs__length_11604 LN:11604 skipping SAM header line: @SQ SN:PGA_scaffold98148__1_contigs__length_11604 LN:11604 skipping SAM header line: @SQ 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skipping SAM header line: @SQ SN:PGA_scaffold100391__1_contigs__length_10360 LN:10360 skipping SAM header line: @SQ SN:PGA_scaffold100392__1_contigs__length_10360 LN:10360 skipping SAM header line: @SQ SN:PGA_scaffold100423__1_contigs__length_11676 LN:11676 skipping SAM header line: @SQ SN:PGA_scaffold100424__1_contigs__length_10733 LN:10733 skipping SAM header line: @SQ SN:PGA_scaffold100426__1_contigs__length_11676 LN:11676 skipping SAM header line: @SQ SN:PGA_scaffold100427__1_contigs__length_10733 LN:10733 skipping SAM header line: @SQ SN:PGA_scaffold100493__1_contigs__length_17512 LN:17512 skipping SAM header line: @SQ SN:PGA_scaffold100494__1_contigs__length_17512 LN:17512 skipping SAM header line: @SQ SN:PGA_scaffold100495__1_contigs__length_12359 LN:12359 skipping SAM header line: @SQ SN:PGA_scaffold100499__1_contigs__length_12359 LN:12359 skipping SAM header line: @SQ SN:PGA_scaffold100673__1_contigs__length_17814 LN:17814 skipping SAM header line: @SQ 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skipping SAM header line: @SQ SN:PGA_scaffold313631__2_contigs__length_8242674 LN:8242674 skipping SAM header line: @SQ SN:PGA_scaffold313632__1_contigs__length_455018 LN:455018 skipping SAM header line: @SQ SN:PGA_scaffold313633__4_contigs__length_7437738 LN:7437738 skipping SAM header line: @SQ SN:PGA_scaffold313634__13_contigs__length_20839065 LN:20839065 skipping SAM header line: @SQ SN:PGA_scaffold313635__1_contigs__length_2323757 LN:2323757 skipping SAM header line: @SQ SN:PGA_scaffold313636__6_contigs__length_11037725 LN:11037725 skipping SAM header line: @SQ SN:PGA_scaffold313637__2_contigs__length_12400363 LN:12400363 skipping SAM header line: @SQ SN:PGA_scaffold313638__1_contigs__length_1158482 LN:1158482 skipping SAM header line: @SQ SN:PGA_scaffold313639__1_contigs__length_1164331 LN:1164331 skipping SAM header line: @SQ SN:PGA_scaffold313640__2_contigs__length_5040630 LN:5040630 skipping SAM header line: @SQ SN:PGA_scaffold313641__2_contigs__length_3215659 LN:3215659 skipping SAM header line: @SQ SN:PGA_scaffold313642__1_contigs__length_1742392 LN:1742392 skipping SAM header line: @SQ SN:PGA_scaffold313643__3_contigs__length_4636261 LN:4636261 skipping SAM header line: @SQ SN:PGA_scaffold313644__2_contigs__length_3100009 LN:3100009 skipping SAM header line: @SQ SN:PGA_scaffold313645__2_contigs__length_2213805 LN:2213805 skipping SAM header line: @SQ SN:PGA_scaffold313646__4_contigs__length_6274882 LN:6274882 skipping SAM header line: @SQ SN:PGA_scaffold313647__2_contigs__length_5689983 LN:5689983 skipping SAM header line: @SQ SN:PGA_scaffold313648__2_contigs__length_3786466 LN:3786466 skipping SAM header line: @SQ SN:PGA_scaffold313649__2_contigs__length_2716785 LN:2716785 skipping SAM header line: @PG ID:Bismark VN:v0.19.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64 --samtools_path /gscratch/srlab/programs/samtools-1.9 --score_min L,0,-1.2 -I 60 -p 28 --genome /gscratch/srlab/strigg/data/Pgenr/Pgenr_070_10K/ -1 /gscratch/srlab/strigg/data/Pgenr/FASTQS/2019_broodstock_amb_v_lowpH/Tank2-025-026_R1_001.fastq.gz -2 /gscratch/srlab/strigg/data/Pgenr/FASTQS/2019_broodstock_amb_v_lowpH/Tank2-025-026_R2_001.fastq.gz -o /gscratch/srlab/strigg/analyses/20190415_10K" Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 1000000 Processed lines: 1000000 Processed lines: 1000000 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Exiting.. Processed lines: 39500000 Finished processing child process. Exiting.. Processed lines: 39000000 Processed lines: 39000000 Processed lines: 40000000 Processed lines: 40000000 Processed lines: 40000000 Processed lines: 39000000 Processed lines: 39000000 Processed lines: 39500000 Processed lines: 40000000 Processed lines: 39500000 Processed lines: 39000000 Finished processing child process. Exiting.. Processed lines: 40000000 Now waiting for all child processes to complete Finished processing child process. Exiting.. Processed lines: 40000000 Processed lines: 39500000 Finished processing child process. Exiting.. Processed lines: 39500000 Processed lines: 39500000 Processed lines: 39000000 Processed lines: 39500000 Finished processing child process. Exiting.. Processed lines: 40000000 Processed lines: 39500000 Finished processing child process. Exiting.. Processed lines: 40000000 Processed lines: 40000000 Finished processing child process. Exiting.. Processed lines: 39500000 Processed lines: 40000000 Processed lines: 40000000 Processed lines: 39500000 Processed lines: 39500000 Processed lines: 39500000 Finished processing child process. Exiting.. Processed lines: 39500000 Processed lines: 39500000 Finished processing child process. Exiting.. Processed lines: 40000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 40000000 Processed lines: 39500000 Finished processing child process. Exiting.. Processed lines: 40000000 Processed lines: 40000000 Finished processing child process. Exiting.. Processed lines: 40000000 Processed lines: 39500000 Processed lines: 40000000 Processed lines: 40000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 40000000 Processed lines: 40000000 Processed lines: 40000000 Processed lines: 40000000 Processed lines: 40000000 Processed lines: 40000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 40000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 40000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Merging individual splitting reports into overall report: '/gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: Processed 40132809 lines in total Total number of methylation call strings processed: 80265618 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1485241266 Total methylated C's in CpG context: 34942833 Total methylated C's in CHG context: 9334228 Total methylated C's in CHH context: 38423399 Total C to T conversions in CpG context: 140499026 Total C to T conversions in CHG context: 254525528 Total C to T conversions in CHH context: 1007516252 C methylated in CpG context: 19.9% C methylated in CHG context: 3.5% C methylated in CHH context: 3.7% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 150 Maximum read length of Read 2: 150 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 150 Maximum read length of Read 2: 150 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OT_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CpG_CTOT_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CpG_CTOB_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OB_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OT_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CHG_CTOT_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CHG_CTOB_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OB_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OT_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CHH_CTOT_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CHH_CTOB_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OB_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OT_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OB_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OT_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OB_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OT_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OB_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >/gscratch/srlab/strigg/analyses/20190415_10K/< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 2G Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: Writing bedGraph to file: Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bismark.cov.gz Changed directory to /gscratch/srlab/strigg/analyses/20190415_10K/ The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Merging all input files and sorting everything in memory instead of writing out individual chromosome files... Writing all merged methylation calls to temp file Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz.methylation_calls.merged Finished writing methylation calls from CpG_OT_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt to merged temp file Finished writing methylation calls from CpG_OB_Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.txt to merged temp file Sorting input file Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz.methylation_calls.merged by positions (using -S of 2G) Successfully deleted the temporary input file Tank2-025-026_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz.methylation_calls.merged Finished BedGraph conversion ... Checking file >>/gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... ...passed! Writing result file containing methylation information for C in CpG context from the original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OT_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CpG context from the complementary to original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CpG_CTOT_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CpG context from the complementary to original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CpG_CTOB_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CpG context from the original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OB_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHG context from the original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OT_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHG context from the complementary to original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHG_CTOT_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHG context from the complementary to original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHG_CTOB_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHG context from the original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OB_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHH context from the original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OT_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHH context from the complementary to original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHH_CTOT_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHH context from the complementary to original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHH_CTOB_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHH context from the original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OB_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold1__77_contigs__length_89643857 LN:89643857 skipping SAM header line: @SQ SN:PGA_scaffold2__36_contigs__length_69596280 LN:69596280 skipping SAM header line: @SQ SN:PGA_scaffold3__111_contigs__length_57743597 LN:57743597 skipping SAM header line: @SQ SN:PGA_scaffold4__129_contigs__length_65288255 LN:65288255 skipping SAM header line: @SQ SN:PGA_scaffold5__109_contigs__length_67248332 LN:67248332 skipping SAM header line: @SQ SN:PGA_scaffold6__104_contigs__length_61759565 LN:61759565 skipping SAM header line: @SQ SN:PGA_scaffold7__69_contigs__length_43120122 LN:43120122 skipping SAM header line: @SQ SN:PGA_scaffold8__63_contigs__length_61151155 LN:61151155 skipping SAM header line: @SQ SN:PGA_scaffold9__45_contigs__length_38581958 LN:38581958 skipping SAM header line: @SQ SN:PGA_scaffold10__49_contigs__length_53961475 LN:53961475 skipping SAM header line: @SQ SN:PGA_scaffold11__79_contigs__length_51449921 LN:51449921 skipping SAM header line: @SQ SN:PGA_scaffold12__71_contigs__length_50438331 LN:50438331 skipping SAM header line: @SQ SN:PGA_scaffold13__52_contigs__length_44396874 LN:44396874 skipping SAM header line: @SQ SN:PGA_scaffold14__91_contigs__length_45393038 LN:45393038 skipping SAM header line: @SQ SN:PGA_scaffold15__101_contigs__length_47938513 LN:47938513 skipping SAM header line: @SQ SN:PGA_scaffold16__33_contigs__length_31980953 LN:31980953 skipping SAM header line: @SQ SN:PGA_scaffold17__51_contigs__length_34923512 LN:34923512 skipping SAM header line: @SQ SN:PGA_scaffold18__69_contigs__length_27737463 LN:27737463 skipping SAM header line: @SQ SN:PGA_scaffold30__1_contigs__length_14564 LN:14564 skipping SAM header line: @SQ SN:PGA_scaffold40__1_contigs__length_11028 LN:11028 skipping SAM header line: @SQ SN:PGA_scaffold47__1_contigs__length_11306 LN:11306 skipping SAM header line: @SQ SN:PGA_scaffold50__1_contigs__length_12313 LN:12313 skipping SAM header line: @SQ SN:PGA_scaffold56__1_contigs__length_12916 LN:12916 skipping SAM header line: @SQ SN:PGA_scaffold57__1_contigs__length_10805 LN:10805 skipping SAM header line: @SQ SN:PGA_scaffold59__1_contigs__length_11287 LN:11287 skipping SAM header line: @SQ SN:PGA_scaffold63__1_contigs__length_14464 LN:14464 skipping SAM header line: @SQ SN:PGA_scaffold67__1_contigs__length_22617 LN:22617 skipping SAM header line: @SQ SN:PGA_scaffold77__1_contigs__length_20591 LN:20591 skipping SAM header line: @SQ SN:PGA_scaffold78__1_contigs__length_10113 LN:10113 skipping SAM header line: @SQ SN:PGA_scaffold79__1_contigs__length_10943 LN:10943 skipping SAM header line: @SQ SN:PGA_scaffold86__1_contigs__length_14938 LN:14938 skipping SAM header line: @SQ SN:PGA_scaffold88__1_contigs__length_25629 LN:25629 skipping SAM header line: @SQ SN:PGA_scaffold89__1_contigs__length_12336 LN:12336 skipping SAM header line: @SQ SN:PGA_scaffold98__1_contigs__length_16968 LN:16968 skipping SAM header line: @SQ SN:PGA_scaffold99__1_contigs__length_23682 LN:23682 skipping SAM header line: @SQ SN:PGA_scaffold100__1_contigs__length_37850 LN:37850 skipping SAM header line: @SQ SN:PGA_scaffold101__1_contigs__length_30584 LN:30584 skipping SAM header line: @SQ SN:PGA_scaffold102__1_contigs__length_45787 LN:45787 skipping SAM header line: @SQ SN:PGA_scaffold103__1_contigs__length_12750 LN:12750 skipping SAM header line: @SQ SN:PGA_scaffold104__1_contigs__length_44353 LN:44353 skipping SAM header line: @SQ SN:PGA_scaffold105__1_contigs__length_50812 LN:50812 skipping SAM header line: @SQ SN:PGA_scaffold106__1_contigs__length_25211 LN:25211 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold16632__1_contigs__length_10592 LN:10592 skipping SAM header line: @SQ SN:PGA_scaffold16640__1_contigs__length_11658 LN:11658 skipping SAM header line: @SQ SN:PGA_scaffold16641__1_contigs__length_17101 LN:17101 skipping SAM header line: @SQ SN:PGA_scaffold16646__1_contigs__length_10132 LN:10132 skipping SAM header line: @SQ SN:PGA_scaffold16648__1_contigs__length_11826 LN:11826 skipping SAM header line: @SQ SN:PGA_scaffold16652__1_contigs__length_10221 LN:10221 skipping SAM header line: @SQ SN:PGA_scaffold16655__1_contigs__length_13451 LN:13451 skipping SAM header line: @SQ SN:PGA_scaffold16657__1_contigs__length_18916 LN:18916 skipping SAM header line: @SQ SN:PGA_scaffold16658__1_contigs__length_10304 LN:10304 skipping SAM header line: @SQ SN:PGA_scaffold16663__1_contigs__length_16397 LN:16397 skipping SAM header line: @SQ SN:PGA_scaffold16664__1_contigs__length_10333 LN:10333 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold16718__1_contigs__length_15725 LN:15725 skipping SAM header line: @SQ SN:PGA_scaffold16721__1_contigs__length_13752 LN:13752 skipping SAM header line: @SQ SN:PGA_scaffold16729__1_contigs__length_10112 LN:10112 skipping SAM header line: @SQ SN:PGA_scaffold16737__1_contigs__length_16779 LN:16779 skipping SAM header line: @SQ SN:PGA_scaffold16740__1_contigs__length_18484 LN:18484 skipping SAM header line: @SQ SN:PGA_scaffold16742__1_contigs__length_13815 LN:13815 skipping SAM header line: @SQ SN:PGA_scaffold16745__1_contigs__length_20020 LN:20020 skipping SAM header line: @SQ SN:PGA_scaffold16752__1_contigs__length_21767 LN:21767 skipping SAM header line: @SQ SN:PGA_scaffold16757__1_contigs__length_13878 LN:13878 skipping SAM header line: @SQ SN:PGA_scaffold16758__1_contigs__length_11981 LN:11981 skipping SAM header line: @SQ SN:PGA_scaffold16764__1_contigs__length_15779 LN:15779 skipping SAM header line: @SQ SN:PGA_scaffold16771__1_contigs__length_16758 LN:16758 skipping SAM header line: @SQ SN:PGA_scaffold16787__1_contigs__length_20212 LN:20212 skipping SAM header line: @SQ SN:PGA_scaffold16790__1_contigs__length_13356 LN:13356 skipping SAM header line: @SQ SN:PGA_scaffold16792__1_contigs__length_11755 LN:11755 skipping SAM header line: @SQ SN:PGA_scaffold16798__1_contigs__length_10350 LN:10350 skipping SAM header line: @SQ SN:PGA_scaffold16799__1_contigs__length_12098 LN:12098 skipping SAM header line: @SQ SN:PGA_scaffold16802__1_contigs__length_13873 LN:13873 skipping SAM header line: @SQ SN:PGA_scaffold16805__1_contigs__length_12946 LN:12946 skipping SAM header line: @SQ SN:PGA_scaffold16812__1_contigs__length_15622 LN:15622 skipping SAM header line: @SQ SN:PGA_scaffold16814__1_contigs__length_12033 LN:12033 skipping SAM header line: @SQ SN:PGA_scaffold16826__1_contigs__length_17977 LN:17977 skipping SAM header line: @SQ SN:PGA_scaffold16828__1_contigs__length_17923 LN:17923 skipping SAM header line: @SQ SN:PGA_scaffold16836__1_contigs__length_18912 LN:18912 skipping SAM header line: @SQ SN:PGA_scaffold16840__1_contigs__length_10624 LN:10624 skipping SAM header line: @SQ SN:PGA_scaffold16841__1_contigs__length_10827 LN:10827 skipping SAM header line: @SQ SN:PGA_scaffold16844__1_contigs__length_13505 LN:13505 skipping SAM header line: @SQ SN:PGA_scaffold16858__1_contigs__length_11880 LN:11880 skipping SAM header line: @SQ SN:PGA_scaffold16862__1_contigs__length_10407 LN:10407 skipping SAM header line: @SQ SN:PGA_scaffold16874__1_contigs__length_16641 LN:16641 skipping SAM header line: @SQ SN:PGA_scaffold16877__1_contigs__length_13269 LN:13269 skipping SAM header line: @SQ SN:PGA_scaffold16879__1_contigs__length_10031 LN:10031 skipping SAM header line: @SQ SN:PGA_scaffold16886__1_contigs__length_10984 LN:10984 skipping SAM header line: @SQ SN:PGA_scaffold16888__1_contigs__length_11141 LN:11141 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold16986__1_contigs__length_11883 LN:11883 skipping SAM header line: @SQ SN:PGA_scaffold17566__1_contigs__length_11628 LN:11628 skipping SAM header line: @SQ SN:PGA_scaffold17965__1_contigs__length_10129 LN:10129 skipping SAM header line: @SQ SN:PGA_scaffold18081__1_contigs__length_11877 LN:11877 skipping SAM header line: @SQ SN:PGA_scaffold18126__1_contigs__length_11567 LN:11567 skipping SAM header line: @SQ SN:PGA_scaffold18195__1_contigs__length_11188 LN:11188 skipping SAM header line: @SQ SN:PGA_scaffold18213__1_contigs__length_10518 LN:10518 skipping SAM header line: @SQ SN:PGA_scaffold18228__1_contigs__length_10185 LN:10185 skipping SAM header line: @SQ SN:PGA_scaffold18271__1_contigs__length_11288 LN:11288 skipping SAM header line: @SQ SN:PGA_scaffold18327__1_contigs__length_11940 LN:11940 skipping SAM header line: @SQ SN:PGA_scaffold18332__1_contigs__length_10157 LN:10157 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold19508__1_contigs__length_10035 LN:10035 skipping SAM header line: @SQ SN:PGA_scaffold19546__1_contigs__length_10472 LN:10472 skipping SAM header line: @SQ SN:PGA_scaffold19774__1_contigs__length_11287 LN:11287 skipping SAM header line: @SQ SN:PGA_scaffold19936__1_contigs__length_10229 LN:10229 skipping SAM header line: @SQ SN:PGA_scaffold20040__1_contigs__length_10368 LN:10368 skipping SAM header line: @SQ SN:PGA_scaffold20068__1_contigs__length_10432 LN:10432 skipping SAM header line: @SQ SN:PGA_scaffold20077__1_contigs__length_11037 LN:11037 skipping SAM header line: @SQ SN:PGA_scaffold20078__1_contigs__length_11039 LN:11039 skipping SAM header line: @SQ SN:PGA_scaffold20086__1_contigs__length_11969 LN:11969 skipping SAM header line: @SQ SN:PGA_scaffold20101__1_contigs__length_11603 LN:11603 skipping SAM header line: @SQ SN:PGA_scaffold20102__1_contigs__length_11145 LN:11145 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold23188__1_contigs__length_14822 LN:14822 skipping SAM header line: @SQ SN:PGA_scaffold23209__1_contigs__length_14662 LN:14662 skipping SAM header line: @SQ SN:PGA_scaffold23210__1_contigs__length_14054 LN:14054 skipping SAM header line: @SQ SN:PGA_scaffold23228__1_contigs__length_10417 LN:10417 skipping SAM header line: @SQ SN:PGA_scaffold23231__1_contigs__length_25843 LN:25843 skipping SAM header line: @SQ SN:PGA_scaffold23237__1_contigs__length_27551 LN:27551 skipping SAM header line: @SQ SN:PGA_scaffold23241__1_contigs__length_14202 LN:14202 skipping SAM header line: @SQ SN:PGA_scaffold23250__1_contigs__length_12518 LN:12518 skipping SAM header line: @SQ SN:PGA_scaffold23253__1_contigs__length_15708 LN:15708 skipping SAM header line: @SQ SN:PGA_scaffold23274__1_contigs__length_30357 LN:30357 skipping SAM header line: @SQ SN:PGA_scaffold23295__1_contigs__length_10805 LN:10805 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold23381__1_contigs__length_10554 LN:10554 skipping SAM header line: @SQ SN:PGA_scaffold23387__1_contigs__length_13694 LN:13694 skipping SAM header line: @SQ SN:PGA_scaffold23390__1_contigs__length_13124 LN:13124 skipping SAM header line: @SQ SN:PGA_scaffold23393__1_contigs__length_41334 LN:41334 skipping SAM header line: @SQ SN:PGA_scaffold23427__1_contigs__length_10420 LN:10420 skipping SAM header line: @SQ SN:PGA_scaffold23437__1_contigs__length_14510 LN:14510 skipping SAM header line: @SQ SN:PGA_scaffold23448__1_contigs__length_17612 LN:17612 skipping SAM header line: @SQ SN:PGA_scaffold23452__1_contigs__length_14222 LN:14222 skipping SAM header line: @SQ SN:PGA_scaffold23453__1_contigs__length_16628 LN:16628 skipping SAM header line: @SQ SN:PGA_scaffold23461__1_contigs__length_10113 LN:10113 skipping SAM header line: @SQ SN:PGA_scaffold23498__1_contigs__length_34289 LN:34289 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold23655__1_contigs__length_10337 LN:10337 skipping SAM header line: @SQ SN:PGA_scaffold23661__1_contigs__length_10321 LN:10321 skipping SAM header line: @SQ SN:PGA_scaffold23662__1_contigs__length_18454 LN:18454 skipping SAM header line: @SQ SN:PGA_scaffold23676__1_contigs__length_12062 LN:12062 skipping SAM header line: @SQ SN:PGA_scaffold23691__1_contigs__length_11820 LN:11820 skipping SAM header line: @SQ SN:PGA_scaffold23717__1_contigs__length_32333 LN:32333 skipping SAM header line: @SQ SN:PGA_scaffold23719__1_contigs__length_11468 LN:11468 skipping SAM header line: @SQ SN:PGA_scaffold23734__1_contigs__length_12180 LN:12180 skipping SAM header line: @SQ SN:PGA_scaffold23739__1_contigs__length_13313 LN:13313 skipping SAM header line: @SQ SN:PGA_scaffold23740__1_contigs__length_13963 LN:13963 skipping SAM header line: @SQ SN:PGA_scaffold23765__1_contigs__length_12190 LN:12190 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold23948__1_contigs__length_10574 LN:10574 skipping SAM header line: @SQ SN:PGA_scaffold23969__1_contigs__length_12300 LN:12300 skipping SAM header line: @SQ SN:PGA_scaffold23979__1_contigs__length_33231 LN:33231 skipping SAM header line: @SQ SN:PGA_scaffold23983__1_contigs__length_20757 LN:20757 skipping SAM header line: @SQ SN:PGA_scaffold23987__1_contigs__length_12444 LN:12444 skipping SAM header line: @SQ SN:PGA_scaffold23994__1_contigs__length_11021 LN:11021 skipping SAM header line: @SQ SN:PGA_scaffold23996__1_contigs__length_10052 LN:10052 skipping SAM header line: @SQ SN:PGA_scaffold24053__1_contigs__length_15765 LN:15765 skipping SAM header line: @SQ SN:PGA_scaffold24095__1_contigs__length_13562 LN:13562 skipping SAM header line: @SQ SN:PGA_scaffold24100__1_contigs__length_13552 LN:13552 skipping SAM header line: @SQ SN:PGA_scaffold24112__1_contigs__length_12982 LN:12982 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold24424__1_contigs__length_11426 LN:11426 skipping SAM header line: @SQ SN:PGA_scaffold24447__1_contigs__length_13358 LN:13358 skipping SAM header line: @SQ SN:PGA_scaffold24529__1_contigs__length_12785 LN:12785 skipping SAM header line: @SQ SN:PGA_scaffold24530__1_contigs__length_19797 LN:19797 skipping SAM header line: @SQ SN:PGA_scaffold24576__1_contigs__length_19156 LN:19156 skipping SAM header line: @SQ SN:PGA_scaffold24787__1_contigs__length_16333 LN:16333 skipping SAM header line: @SQ SN:PGA_scaffold25141__1_contigs__length_21688 LN:21688 skipping SAM header line: @SQ SN:PGA_scaffold25168__1_contigs__length_10439 LN:10439 skipping SAM header line: @SQ SN:PGA_scaffold25252__1_contigs__length_15238 LN:15238 skipping SAM header line: @SQ SN:PGA_scaffold25814__1_contigs__length_17034 LN:17034 skipping SAM header line: @SQ SN:PGA_scaffold25844__1_contigs__length_19172 LN:19172 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold28498__1_contigs__length_10234 LN:10234 skipping SAM header line: @SQ SN:PGA_scaffold28504__1_contigs__length_19705 LN:19705 skipping SAM header line: @SQ SN:PGA_scaffold28506__1_contigs__length_15797 LN:15797 skipping SAM header line: @SQ SN:PGA_scaffold28511__1_contigs__length_16145 LN:16145 skipping SAM header line: @SQ SN:PGA_scaffold28515__1_contigs__length_14385 LN:14385 skipping SAM header line: @SQ SN:PGA_scaffold28516__1_contigs__length_11480 LN:11480 skipping SAM header line: @SQ SN:PGA_scaffold28517__1_contigs__length_12877 LN:12877 skipping SAM header line: @SQ SN:PGA_scaffold28526__1_contigs__length_12437 LN:12437 skipping SAM header line: @SQ SN:PGA_scaffold28528__1_contigs__length_10804 LN:10804 skipping SAM header line: @SQ SN:PGA_scaffold28531__1_contigs__length_13236 LN:13236 skipping SAM header line: @SQ SN:PGA_scaffold28534__1_contigs__length_15556 LN:15556 skipping SAM header line: @SQ SN:PGA_scaffold28535__1_contigs__length_10812 LN:10812 skipping SAM header line: @SQ SN:PGA_scaffold28544__1_contigs__length_15625 LN:15625 skipping SAM header line: @SQ SN:PGA_scaffold28545__1_contigs__length_14089 LN:14089 skipping SAM header line: @SQ SN:PGA_scaffold28555__1_contigs__length_12938 LN:12938 skipping SAM header line: @SQ SN:PGA_scaffold28558__1_contigs__length_19389 LN:19389 skipping SAM header line: @SQ SN:PGA_scaffold28559__1_contigs__length_12436 LN:12436 skipping SAM header line: @SQ SN:PGA_scaffold28564__1_contigs__length_19932 LN:19932 skipping SAM header line: @SQ SN:PGA_scaffold28568__1_contigs__length_10552 LN:10552 skipping SAM header line: @SQ SN:PGA_scaffold28571__1_contigs__length_11077 LN:11077 skipping SAM header line: @SQ SN:PGA_scaffold28572__1_contigs__length_13533 LN:13533 skipping SAM header line: @SQ SN:PGA_scaffold28585__1_contigs__length_11346 LN:11346 skipping SAM header line: @SQ SN:PGA_scaffold28596__1_contigs__length_16340 LN:16340 skipping SAM header line: @SQ SN:PGA_scaffold28598__1_contigs__length_14696 LN:14696 skipping SAM header line: @SQ SN:PGA_scaffold28602__1_contigs__length_10127 LN:10127 skipping SAM header line: @SQ SN:PGA_scaffold28607__1_contigs__length_13080 LN:13080 skipping SAM header line: @SQ SN:PGA_scaffold28611__1_contigs__length_10434 LN:10434 skipping SAM header line: @SQ SN:PGA_scaffold28613__1_contigs__length_13082 LN:13082 skipping SAM header line: @SQ SN:PGA_scaffold28618__1_contigs__length_13269 LN:13269 skipping SAM header line: @SQ SN:PGA_scaffold28619__1_contigs__length_16497 LN:16497 skipping SAM header line: @SQ SN:PGA_scaffold28621__1_contigs__length_25892 LN:25892 skipping SAM header line: @SQ SN:PGA_scaffold28624__1_contigs__length_14638 LN:14638 skipping SAM header line: @SQ SN:PGA_scaffold28625__1_contigs__length_12096 LN:12096 skipping SAM header line: @SQ SN:PGA_scaffold28626__1_contigs__length_10661 LN:10661 skipping SAM header line: @SQ SN:PGA_scaffold28630__1_contigs__length_24381 LN:24381 skipping SAM header line: @SQ SN:PGA_scaffold28632__1_contigs__length_10711 LN:10711 skipping SAM header line: @SQ SN:PGA_scaffold28635__1_contigs__length_12304 LN:12304 skipping SAM header line: @SQ SN:PGA_scaffold28639__1_contigs__length_12422 LN:12422 skipping SAM header line: @SQ SN:PGA_scaffold28641__1_contigs__length_12987 LN:12987 skipping SAM header line: @SQ SN:PGA_scaffold28642__1_contigs__length_12153 LN:12153 skipping SAM header line: @SQ SN:PGA_scaffold28643__1_contigs__length_13797 LN:13797 skipping SAM header line: @SQ SN:PGA_scaffold28644__1_contigs__length_22252 LN:22252 skipping SAM header line: @SQ SN:PGA_scaffold28646__1_contigs__length_13612 LN:13612 skipping SAM header line: @SQ SN:PGA_scaffold28647__1_contigs__length_11546 LN:11546 skipping SAM header line: @SQ SN:PGA_scaffold28650__1_contigs__length_14284 LN:14284 skipping SAM header line: @SQ SN:PGA_scaffold28652__1_contigs__length_16760 LN:16760 skipping SAM header line: @SQ SN:PGA_scaffold28654__1_contigs__length_29013 LN:29013 skipping SAM header line: @SQ SN:PGA_scaffold28655__1_contigs__length_15780 LN:15780 skipping SAM header line: @SQ SN:PGA_scaffold28662__1_contigs__length_26222 LN:26222 skipping SAM header line: @SQ SN:PGA_scaffold28663__1_contigs__length_13630 LN:13630 skipping SAM header line: @SQ SN:PGA_scaffold28665__1_contigs__length_13218 LN:13218 skipping SAM header line: @SQ SN:PGA_scaffold28667__1_contigs__length_29584 LN:29584 skipping SAM header line: @SQ SN:PGA_scaffold28680__1_contigs__length_15449 LN:15449 skipping SAM header line: @SQ SN:PGA_scaffold28683__1_contigs__length_16065 LN:16065 skipping SAM header line: @SQ SN:PGA_scaffold28686__1_contigs__length_19855 LN:19855 skipping SAM header line: @SQ SN:PGA_scaffold28696__1_contigs__length_13236 LN:13236 skipping SAM header line: @SQ SN:PGA_scaffold28697__1_contigs__length_15882 LN:15882 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold28759__1_contigs__length_11956 LN:11956 skipping SAM header line: @SQ SN:PGA_scaffold28761__1_contigs__length_14466 LN:14466 skipping SAM header line: @SQ SN:PGA_scaffold28762__1_contigs__length_10766 LN:10766 skipping SAM header line: @SQ SN:PGA_scaffold28766__1_contigs__length_13756 LN:13756 skipping SAM header line: @SQ SN:PGA_scaffold28775__1_contigs__length_13504 LN:13504 skipping SAM header line: @SQ SN:PGA_scaffold28777__1_contigs__length_19123 LN:19123 skipping SAM header line: @SQ SN:PGA_scaffold28783__1_contigs__length_14046 LN:14046 skipping SAM header line: @SQ SN:PGA_scaffold28792__1_contigs__length_19581 LN:19581 skipping SAM header line: @SQ SN:PGA_scaffold28793__1_contigs__length_19136 LN:19136 skipping SAM header line: @SQ SN:PGA_scaffold28794__1_contigs__length_16056 LN:16056 skipping SAM header line: @SQ SN:PGA_scaffold28803__1_contigs__length_20465 LN:20465 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold28885__1_contigs__length_10461 LN:10461 skipping SAM header line: @SQ SN:PGA_scaffold28894__1_contigs__length_22122 LN:22122 skipping SAM header line: @SQ SN:PGA_scaffold28897__1_contigs__length_20422 LN:20422 skipping SAM header line: @SQ SN:PGA_scaffold28898__1_contigs__length_19327 LN:19327 skipping SAM header line: @SQ SN:PGA_scaffold28900__1_contigs__length_13462 LN:13462 skipping SAM header line: @SQ SN:PGA_scaffold28902__1_contigs__length_13506 LN:13506 skipping SAM header line: @SQ SN:PGA_scaffold28904__1_contigs__length_22030 LN:22030 skipping SAM header line: @SQ SN:PGA_scaffold28909__1_contigs__length_20510 LN:20510 skipping SAM header line: @SQ SN:PGA_scaffold28917__1_contigs__length_14276 LN:14276 skipping SAM header line: @SQ SN:PGA_scaffold28918__1_contigs__length_20669 LN:20669 skipping SAM header line: @SQ SN:PGA_scaffold28919__1_contigs__length_13919 LN:13919 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold29063__1_contigs__length_13414 LN:13414 skipping SAM header line: @SQ SN:PGA_scaffold29072__1_contigs__length_11415 LN:11415 skipping SAM header line: @SQ SN:PGA_scaffold29074__1_contigs__length_18546 LN:18546 skipping SAM header line: @SQ SN:PGA_scaffold29081__1_contigs__length_12695 LN:12695 skipping SAM header line: @SQ SN:PGA_scaffold29083__1_contigs__length_11618 LN:11618 skipping SAM header line: @SQ SN:PGA_scaffold29084__1_contigs__length_15798 LN:15798 skipping SAM header line: @SQ SN:PGA_scaffold29090__1_contigs__length_12280 LN:12280 skipping SAM header line: @SQ SN:PGA_scaffold29093__1_contigs__length_10726 LN:10726 skipping SAM header line: @SQ SN:PGA_scaffold29097__1_contigs__length_14145 LN:14145 skipping SAM header line: @SQ SN:PGA_scaffold29101__1_contigs__length_12705 LN:12705 skipping SAM header line: @SQ SN:PGA_scaffold29103__1_contigs__length_14173 LN:14173 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold29275__1_contigs__length_41210 LN:41210 skipping SAM header line: @SQ SN:PGA_scaffold29277__1_contigs__length_13918 LN:13918 skipping SAM header line: @SQ SN:PGA_scaffold29293__1_contigs__length_20779 LN:20779 skipping SAM header line: @SQ SN:PGA_scaffold29305__1_contigs__length_13519 LN:13519 skipping SAM header line: @SQ SN:PGA_scaffold29307__1_contigs__length_14969 LN:14969 skipping SAM header line: @SQ SN:PGA_scaffold29311__1_contigs__length_13131 LN:13131 skipping SAM header line: @SQ SN:PGA_scaffold29316__1_contigs__length_10214 LN:10214 skipping SAM header line: @SQ SN:PGA_scaffold29317__1_contigs__length_16559 LN:16559 skipping SAM header line: @SQ SN:PGA_scaffold29318__1_contigs__length_10431 LN:10431 skipping SAM header line: @SQ SN:PGA_scaffold29320__1_contigs__length_12906 LN:12906 skipping SAM header line: @SQ SN:PGA_scaffold29322__1_contigs__length_16731 LN:16731 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold29348__1_contigs__length_15827 LN:15827 skipping SAM header line: @SQ SN:PGA_scaffold29349__1_contigs__length_13001 LN:13001 skipping SAM header line: @SQ SN:PGA_scaffold29351__1_contigs__length_16949 LN:16949 skipping SAM header line: @SQ SN:PGA_scaffold29353__1_contigs__length_10332 LN:10332 skipping SAM header line: @SQ SN:PGA_scaffold29354__1_contigs__length_14797 LN:14797 skipping SAM header line: @SQ SN:PGA_scaffold29355__1_contigs__length_14032 LN:14032 skipping SAM header line: @SQ SN:PGA_scaffold29356__1_contigs__length_14075 LN:14075 skipping SAM header line: @SQ SN:PGA_scaffold29357__1_contigs__length_13445 LN:13445 skipping SAM header line: @SQ SN:PGA_scaffold29365__1_contigs__length_20246 LN:20246 skipping SAM header line: @SQ SN:PGA_scaffold29368__1_contigs__length_17390 LN:17390 skipping SAM header line: @SQ SN:PGA_scaffold29369__1_contigs__length_12829 LN:12829 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold30294__1_contigs__length_10439 LN:10439 skipping SAM header line: @SQ SN:PGA_scaffold30295__1_contigs__length_20347 LN:20347 skipping SAM header line: @SQ SN:PGA_scaffold30305__1_contigs__length_19024 LN:19024 skipping SAM header line: @SQ SN:PGA_scaffold30312__1_contigs__length_16788 LN:16788 skipping SAM header line: @SQ SN:PGA_scaffold30316__1_contigs__length_15411 LN:15411 skipping SAM header line: @SQ SN:PGA_scaffold30318__1_contigs__length_16862 LN:16862 skipping SAM header line: @SQ SN:PGA_scaffold30321__1_contigs__length_17045 LN:17045 skipping SAM header line: @SQ SN:PGA_scaffold30328__1_contigs__length_11668 LN:11668 skipping SAM header line: @SQ SN:PGA_scaffold30332__1_contigs__length_10821 LN:10821 skipping SAM header line: @SQ SN:PGA_scaffold30336__1_contigs__length_17323 LN:17323 skipping SAM header line: @SQ SN:PGA_scaffold30341__1_contigs__length_17156 LN:17156 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold30427__1_contigs__length_10634 LN:10634 skipping SAM header line: @SQ SN:PGA_scaffold30449__1_contigs__length_12905 LN:12905 skipping SAM header line: @SQ SN:PGA_scaffold30466__1_contigs__length_12378 LN:12378 skipping SAM header line: @SQ SN:PGA_scaffold30518__1_contigs__length_14293 LN:14293 skipping SAM header line: @SQ SN:PGA_scaffold30633__1_contigs__length_19041 LN:19041 skipping SAM header line: @SQ SN:PGA_scaffold30670__1_contigs__length_10090 LN:10090 skipping SAM header line: @SQ SN:PGA_scaffold30671__1_contigs__length_11900 LN:11900 skipping SAM header line: @SQ SN:PGA_scaffold30688__1_contigs__length_21518 LN:21518 skipping SAM header line: @SQ SN:PGA_scaffold30700__1_contigs__length_25722 LN:25722 skipping SAM header line: @SQ SN:PGA_scaffold30708__1_contigs__length_12888 LN:12888 skipping SAM header line: @SQ SN:PGA_scaffold30714__1_contigs__length_22339 LN:22339 skipping SAM header line: @SQ SN:PGA_scaffold30719__1_contigs__length_39357 LN:39357 skipping SAM header line: @SQ SN:PGA_scaffold30725__1_contigs__length_17538 LN:17538 skipping SAM header line: @SQ SN:PGA_scaffold30731__1_contigs__length_11184 LN:11184 skipping SAM header line: @SQ SN:PGA_scaffold30759__1_contigs__length_15392 LN:15392 skipping SAM header line: @SQ SN:PGA_scaffold30811__1_contigs__length_10299 LN:10299 skipping SAM header line: @SQ SN:PGA_scaffold30827__1_contigs__length_20958 LN:20958 skipping SAM header line: @SQ SN:PGA_scaffold30845__1_contigs__length_19666 LN:19666 skipping SAM header line: @SQ SN:PGA_scaffold30875__1_contigs__length_14743 LN:14743 skipping SAM header line: @SQ SN:PGA_scaffold30879__1_contigs__length_15637 LN:15637 skipping SAM header line: @SQ SN:PGA_scaffold30963__1_contigs__length_11909 LN:11909 skipping SAM header line: @SQ SN:PGA_scaffold30965__1_contigs__length_11698 LN:11698 skipping SAM header line: @SQ SN:PGA_scaffold31010__1_contigs__length_11041 LN:11041 skipping SAM header line: @SQ SN:PGA_scaffold31062__1_contigs__length_12977 LN:12977 skipping SAM header line: @SQ SN:PGA_scaffold31094__1_contigs__length_20417 LN:20417 skipping SAM header line: @SQ SN:PGA_scaffold31103__1_contigs__length_16742 LN:16742 skipping SAM header line: @SQ SN:PGA_scaffold31115__1_contigs__length_24595 LN:24595 skipping SAM header line: @SQ SN:PGA_scaffold31158__1_contigs__length_11227 LN:11227 skipping SAM header line: @SQ SN:PGA_scaffold31204__1_contigs__length_15486 LN:15486 skipping SAM header line: @SQ SN:PGA_scaffold31228__1_contigs__length_10138 LN:10138 skipping SAM header line: @SQ SN:PGA_scaffold31229__1_contigs__length_11661 LN:11661 skipping SAM header line: @SQ SN:PGA_scaffold31230__1_contigs__length_19991 LN:19991 skipping SAM header line: @SQ SN:PGA_scaffold31234__1_contigs__length_38472 LN:38472 skipping SAM header line: @SQ SN:PGA_scaffold31263__1_contigs__length_10014 LN:10014 skipping SAM header line: @SQ SN:PGA_scaffold31265__1_contigs__length_21513 LN:21513 skipping SAM header line: @SQ SN:PGA_scaffold31271__1_contigs__length_29942 LN:29942 skipping SAM header line: @SQ SN:PGA_scaffold31274__1_contigs__length_15875 LN:15875 skipping SAM header line: @SQ SN:PGA_scaffold31278__1_contigs__length_11392 LN:11392 skipping SAM header line: @SQ SN:PGA_scaffold31281__1_contigs__length_11386 LN:11386 skipping SAM header line: @SQ SN:PGA_scaffold31286__1_contigs__length_11505 LN:11505 skipping SAM header line: @SQ SN:PGA_scaffold31294__1_contigs__length_11909 LN:11909 skipping SAM header line: @SQ SN:PGA_scaffold31307__1_contigs__length_18080 LN:18080 skipping SAM header line: @SQ SN:PGA_scaffold31310__1_contigs__length_24964 LN:24964 skipping SAM header line: @SQ SN:PGA_scaffold31311__1_contigs__length_10646 LN:10646 skipping SAM header line: @SQ SN:PGA_scaffold31338__1_contigs__length_10572 LN:10572 skipping SAM header line: @SQ SN:PGA_scaffold31341__1_contigs__length_13542 LN:13542 skipping SAM header line: @SQ SN:PGA_scaffold31345__1_contigs__length_22060 LN:22060 skipping SAM header line: @SQ SN:PGA_scaffold31347__1_contigs__length_10070 LN:10070 skipping SAM header line: @SQ SN:PGA_scaffold31354__1_contigs__length_10568 LN:10568 skipping SAM header line: @SQ SN:PGA_scaffold31355__1_contigs__length_10187 LN:10187 skipping SAM header line: @SQ SN:PGA_scaffold31361__1_contigs__length_12834 LN:12834 skipping SAM header line: @SQ SN:PGA_scaffold31362__1_contigs__length_12046 LN:12046 skipping SAM header line: @SQ SN:PGA_scaffold31371__1_contigs__length_17378 LN:17378 skipping SAM header line: @SQ SN:PGA_scaffold31377__1_contigs__length_22923 LN:22923 skipping SAM header line: @SQ SN:PGA_scaffold31378__1_contigs__length_12722 LN:12722 skipping SAM header line: @SQ SN:PGA_scaffold31381__1_contigs__length_16543 LN:16543 skipping SAM header line: @SQ SN:PGA_scaffold31383__1_contigs__length_26303 LN:26303 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold31482__1_contigs__length_13633 LN:13633 skipping SAM header line: @SQ SN:PGA_scaffold31486__1_contigs__length_11936 LN:11936 skipping SAM header line: @SQ SN:PGA_scaffold31491__1_contigs__length_11832 LN:11832 skipping SAM header line: @SQ SN:PGA_scaffold31502__1_contigs__length_10306 LN:10306 skipping SAM header line: @SQ SN:PGA_scaffold31504__1_contigs__length_19744 LN:19744 skipping SAM header line: @SQ SN:PGA_scaffold31510__1_contigs__length_13243 LN:13243 skipping SAM header line: @SQ SN:PGA_scaffold31513__1_contigs__length_10835 LN:10835 skipping SAM header line: @SQ SN:PGA_scaffold31516__1_contigs__length_11405 LN:11405 skipping SAM header line: @SQ SN:PGA_scaffold31519__1_contigs__length_10399 LN:10399 skipping SAM header line: @SQ SN:PGA_scaffold31521__1_contigs__length_18089 LN:18089 skipping SAM header line: @SQ SN:PGA_scaffold31526__1_contigs__length_12072 LN:12072 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold31590__1_contigs__length_15928 LN:15928 skipping SAM header line: @SQ SN:PGA_scaffold31596__1_contigs__length_10897 LN:10897 skipping SAM header line: @SQ SN:PGA_scaffold31599__1_contigs__length_12403 LN:12403 skipping SAM header line: @SQ SN:PGA_scaffold31600__1_contigs__length_27120 LN:27120 skipping SAM header line: @SQ SN:PGA_scaffold31606__1_contigs__length_13187 LN:13187 skipping SAM header line: @SQ SN:PGA_scaffold31610__1_contigs__length_21259 LN:21259 skipping SAM header line: @SQ SN:PGA_scaffold31611__1_contigs__length_10429 LN:10429 skipping SAM header line: @SQ SN:PGA_scaffold31619__1_contigs__length_25003 LN:25003 skipping SAM header line: @SQ SN:PGA_scaffold31622__1_contigs__length_24280 LN:24280 skipping SAM header line: @SQ SN:PGA_scaffold31623__1_contigs__length_13801 LN:13801 skipping SAM header line: @SQ SN:PGA_scaffold31626__1_contigs__length_18480 LN:18480 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold31663__1_contigs__length_16538 LN:16538 skipping SAM header line: @SQ SN:PGA_scaffold31666__1_contigs__length_11630 LN:11630 skipping SAM header line: @SQ SN:PGA_scaffold31667__1_contigs__length_13121 LN:13121 skipping SAM header line: @SQ SN:PGA_scaffold31669__1_contigs__length_10088 LN:10088 skipping SAM header line: @SQ SN:PGA_scaffold31674__1_contigs__length_14958 LN:14958 skipping SAM header line: @SQ SN:PGA_scaffold31677__1_contigs__length_17185 LN:17185 skipping SAM header line: @SQ SN:PGA_scaffold31678__1_contigs__length_11855 LN:11855 skipping SAM header line: @SQ SN:PGA_scaffold31680__1_contigs__length_13804 LN:13804 skipping SAM header line: @SQ SN:PGA_scaffold31683__1_contigs__length_13752 LN:13752 skipping SAM header line: @SQ SN:PGA_scaffold31691__1_contigs__length_10160 LN:10160 skipping SAM header line: @SQ SN:PGA_scaffold31696__1_contigs__length_24124 LN:24124 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold31723__1_contigs__length_15034 LN:15034 skipping SAM header line: @SQ SN:PGA_scaffold31729__1_contigs__length_25701 LN:25701 skipping SAM header line: @SQ SN:PGA_scaffold31730__1_contigs__length_15904 LN:15904 skipping SAM header line: @SQ SN:PGA_scaffold31735__1_contigs__length_17211 LN:17211 skipping SAM header line: @SQ SN:PGA_scaffold31738__1_contigs__length_23027 LN:23027 skipping SAM header line: @SQ SN:PGA_scaffold31739__1_contigs__length_12078 LN:12078 skipping SAM header line: @SQ SN:PGA_scaffold31740__1_contigs__length_16733 LN:16733 skipping SAM header line: @SQ SN:PGA_scaffold31741__1_contigs__length_19907 LN:19907 skipping SAM header line: @SQ SN:PGA_scaffold31747__1_contigs__length_34728 LN:34728 skipping SAM header line: @SQ SN:PGA_scaffold31748__1_contigs__length_17993 LN:17993 skipping SAM header line: @SQ SN:PGA_scaffold31751__1_contigs__length_33342 LN:33342 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold31796__1_contigs__length_14086 LN:14086 skipping SAM header line: @SQ SN:PGA_scaffold31803__1_contigs__length_11656 LN:11656 skipping SAM header line: @SQ SN:PGA_scaffold31804__1_contigs__length_13872 LN:13872 skipping SAM header line: @SQ SN:PGA_scaffold31807__1_contigs__length_20368 LN:20368 skipping SAM header line: @SQ SN:PGA_scaffold31809__1_contigs__length_12997 LN:12997 skipping SAM header line: @SQ SN:PGA_scaffold31810__1_contigs__length_25011 LN:25011 skipping SAM header line: @SQ SN:PGA_scaffold31811__1_contigs__length_13567 LN:13567 skipping SAM header line: @SQ SN:PGA_scaffold31812__1_contigs__length_23207 LN:23207 skipping SAM header line: @SQ SN:PGA_scaffold31815__1_contigs__length_17241 LN:17241 skipping SAM header line: @SQ SN:PGA_scaffold31816__1_contigs__length_11090 LN:11090 skipping SAM header line: @SQ SN:PGA_scaffold31817__1_contigs__length_19400 LN:19400 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold32027__1_contigs__length_11657 LN:11657 skipping SAM header line: @SQ SN:PGA_scaffold32033__1_contigs__length_10177 LN:10177 skipping SAM header line: @SQ SN:PGA_scaffold32037__1_contigs__length_12059 LN:12059 skipping SAM header line: @SQ SN:PGA_scaffold32038__1_contigs__length_10627 LN:10627 skipping SAM header line: @SQ SN:PGA_scaffold32039__1_contigs__length_11937 LN:11937 skipping SAM header line: @SQ SN:PGA_scaffold32040__1_contigs__length_25532 LN:25532 skipping SAM header line: @SQ SN:PGA_scaffold32042__1_contigs__length_24927 LN:24927 skipping SAM header line: @SQ SN:PGA_scaffold32043__1_contigs__length_17381 LN:17381 skipping SAM header line: @SQ SN:PGA_scaffold32044__1_contigs__length_14848 LN:14848 skipping SAM header line: @SQ SN:PGA_scaffold32046__1_contigs__length_31565 LN:31565 skipping SAM header line: @SQ SN:PGA_scaffold32048__1_contigs__length_23410 LN:23410 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold32095__1_contigs__length_16120 LN:16120 skipping SAM header line: @SQ SN:PGA_scaffold32097__1_contigs__length_20765 LN:20765 skipping SAM header line: @SQ SN:PGA_scaffold32098__1_contigs__length_10590 LN:10590 skipping SAM header line: @SQ SN:PGA_scaffold32104__1_contigs__length_16631 LN:16631 skipping SAM header line: @SQ SN:PGA_scaffold32105__1_contigs__length_12104 LN:12104 skipping SAM header line: @SQ SN:PGA_scaffold32151__1_contigs__length_16264 LN:16264 skipping SAM header line: @SQ SN:PGA_scaffold32174__1_contigs__length_11533 LN:11533 skipping SAM header line: @SQ SN:PGA_scaffold32179__1_contigs__length_12831 LN:12831 skipping SAM header line: @SQ SN:PGA_scaffold32180__1_contigs__length_11854 LN:11854 skipping SAM header line: @SQ SN:PGA_scaffold32184__1_contigs__length_11206 LN:11206 skipping SAM header line: @SQ SN:PGA_scaffold32200__1_contigs__length_20934 LN:20934 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold32422__1_contigs__length_10459 LN:10459 skipping SAM header line: @SQ SN:PGA_scaffold32443__1_contigs__length_17725 LN:17725 skipping SAM header line: @SQ SN:PGA_scaffold32473__1_contigs__length_13861 LN:13861 skipping SAM header line: @SQ SN:PGA_scaffold32478__1_contigs__length_13564 LN:13564 skipping SAM header line: @SQ SN:PGA_scaffold32480__1_contigs__length_14191 LN:14191 skipping SAM header line: @SQ SN:PGA_scaffold32511__1_contigs__length_13229 LN:13229 skipping SAM header line: @SQ SN:PGA_scaffold32514__1_contigs__length_31990 LN:31990 skipping SAM header line: @SQ SN:PGA_scaffold32519__1_contigs__length_10309 LN:10309 skipping SAM header line: @SQ SN:PGA_scaffold32534__1_contigs__length_11546 LN:11546 skipping SAM header line: @SQ SN:PGA_scaffold32535__1_contigs__length_13023 LN:13023 skipping SAM header line: @SQ SN:PGA_scaffold32541__1_contigs__length_11466 LN:11466 skipping SAM header line: @SQ SN:PGA_scaffold32570__1_contigs__length_10954 LN:10954 skipping SAM header line: @SQ SN:PGA_scaffold32611__1_contigs__length_26190 LN:26190 skipping SAM header line: @SQ SN:PGA_scaffold32613__1_contigs__length_17022 LN:17022 skipping SAM header line: @SQ SN:PGA_scaffold32631__1_contigs__length_12282 LN:12282 skipping SAM header line: @SQ SN:PGA_scaffold32640__1_contigs__length_13749 LN:13749 skipping SAM header line: @SQ SN:PGA_scaffold32711__1_contigs__length_22694 LN:22694 skipping SAM header line: @SQ SN:PGA_scaffold32718__1_contigs__length_12469 LN:12469 skipping SAM header line: @SQ SN:PGA_scaffold32725__1_contigs__length_10005 LN:10005 skipping SAM header line: @SQ SN:PGA_scaffold32734__1_contigs__length_14330 LN:14330 skipping SAM header line: @SQ SN:PGA_scaffold32766__1_contigs__length_11058 LN:11058 skipping SAM header line: @SQ SN:PGA_scaffold32767__1_contigs__length_11144 LN:11144 skipping SAM header line: @SQ SN:PGA_scaffold32798__1_contigs__length_19422 LN:19422 skipping SAM header line: @SQ SN:PGA_scaffold32828__1_contigs__length_11822 LN:11822 skipping SAM header line: @SQ SN:PGA_scaffold32856__1_contigs__length_11646 LN:11646 skipping SAM header line: @SQ SN:PGA_scaffold32863__1_contigs__length_11367 LN:11367 skipping SAM header line: @SQ SN:PGA_scaffold32887__1_contigs__length_13194 LN:13194 skipping SAM header line: @SQ SN:PGA_scaffold32899__1_contigs__length_11463 LN:11463 skipping SAM header line: @SQ SN:PGA_scaffold32916__1_contigs__length_12845 LN:12845 skipping SAM header line: @SQ SN:PGA_scaffold32934__1_contigs__length_18106 LN:18106 skipping SAM header line: @SQ SN:PGA_scaffold32970__1_contigs__length_14230 LN:14230 skipping SAM header line: @SQ SN:PGA_scaffold33025__1_contigs__length_12027 LN:12027 skipping SAM header line: @SQ SN:PGA_scaffold33043__1_contigs__length_14738 LN:14738 skipping SAM header line: @SQ SN:PGA_scaffold33125__1_contigs__length_16430 LN:16430 skipping SAM header line: @SQ SN:PGA_scaffold33144__1_contigs__length_12748 LN:12748 skipping SAM header line: @SQ SN:PGA_scaffold33190__1_contigs__length_10961 LN:10961 skipping SAM header line: @SQ SN:PGA_scaffold33195__1_contigs__length_15313 LN:15313 skipping SAM header line: @SQ SN:PGA_scaffold33236__1_contigs__length_20000 LN:20000 skipping SAM header line: @SQ SN:PGA_scaffold33251__1_contigs__length_21014 LN:21014 skipping SAM header line: @SQ SN:PGA_scaffold33287__1_contigs__length_25380 LN:25380 skipping SAM header line: @SQ SN:PGA_scaffold33330__1_contigs__length_10535 LN:10535 skipping SAM header line: @SQ SN:PGA_scaffold33338__1_contigs__length_10918 LN:10918 skipping SAM header line: @SQ SN:PGA_scaffold33351__1_contigs__length_12441 LN:12441 skipping SAM header line: @SQ SN:PGA_scaffold33379__1_contigs__length_12750 LN:12750 skipping SAM header line: @SQ SN:PGA_scaffold33411__1_contigs__length_11115 LN:11115 skipping SAM header line: @SQ SN:PGA_scaffold33432__1_contigs__length_11949 LN:11949 skipping SAM header line: @SQ SN:PGA_scaffold33455__1_contigs__length_11478 LN:11478 skipping SAM header line: @SQ SN:PGA_scaffold33484__1_contigs__length_13969 LN:13969 skipping SAM header line: @SQ SN:PGA_scaffold33610__1_contigs__length_23436 LN:23436 skipping SAM header line: @SQ SN:PGA_scaffold33641__1_contigs__length_13968 LN:13968 skipping SAM header line: @SQ SN:PGA_scaffold33695__1_contigs__length_12517 LN:12517 skipping SAM header line: @SQ SN:PGA_scaffold33892__1_contigs__length_11640 LN:11640 skipping SAM header line: @SQ SN:PGA_scaffold34178__1_contigs__length_11708 LN:11708 skipping SAM header line: @SQ SN:PGA_scaffold34180__1_contigs__length_12595 LN:12595 skipping SAM header line: @SQ SN:PGA_scaffold34199__1_contigs__length_13942 LN:13942 skipping SAM header line: @SQ SN:PGA_scaffold34214__1_contigs__length_13854 LN:13854 skipping SAM header line: @SQ SN:PGA_scaffold34303__1_contigs__length_24124 LN:24124 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold35009__1_contigs__length_16778 LN:16778 skipping SAM header line: @SQ SN:PGA_scaffold35022__1_contigs__length_52621 LN:52621 skipping SAM header line: @SQ SN:PGA_scaffold35039__1_contigs__length_10976 LN:10976 skipping SAM header line: @SQ SN:PGA_scaffold35106__1_contigs__length_10202 LN:10202 skipping SAM header line: @SQ SN:PGA_scaffold35129__1_contigs__length_11351 LN:11351 skipping SAM header line: @SQ SN:PGA_scaffold35149__1_contigs__length_12643 LN:12643 skipping SAM header line: @SQ SN:PGA_scaffold35203__1_contigs__length_12548 LN:12548 skipping SAM header line: @SQ SN:PGA_scaffold35359__1_contigs__length_13200 LN:13200 skipping SAM header line: @SQ SN:PGA_scaffold35408__1_contigs__length_26152 LN:26152 skipping SAM header line: @SQ SN:PGA_scaffold35418__1_contigs__length_16342 LN:16342 skipping SAM header line: @SQ SN:PGA_scaffold35440__1_contigs__length_12749 LN:12749 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold35647__1_contigs__length_13199 LN:13199 skipping SAM header line: @SQ SN:PGA_scaffold35653__1_contigs__length_14111 LN:14111 skipping SAM header line: @SQ SN:PGA_scaffold35691__1_contigs__length_12156 LN:12156 skipping SAM header line: @SQ SN:PGA_scaffold35727__1_contigs__length_16227 LN:16227 skipping SAM header line: @SQ SN:PGA_scaffold35749__1_contigs__length_10571 LN:10571 skipping SAM header line: @SQ SN:PGA_scaffold35789__1_contigs__length_12726 LN:12726 skipping SAM header line: @SQ SN:PGA_scaffold35799__1_contigs__length_14290 LN:14290 skipping SAM header line: @SQ SN:PGA_scaffold35802__1_contigs__length_14541 LN:14541 skipping SAM header line: @SQ SN:PGA_scaffold35809__1_contigs__length_21601 LN:21601 skipping SAM header line: @SQ SN:PGA_scaffold35850__1_contigs__length_13112 LN:13112 skipping SAM header line: @SQ SN:PGA_scaffold35865__1_contigs__length_13223 LN:13223 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold36113__1_contigs__length_11534 LN:11534 skipping SAM header line: @SQ SN:PGA_scaffold36155__1_contigs__length_14141 LN:14141 skipping SAM header line: @SQ SN:PGA_scaffold36162__1_contigs__length_16084 LN:16084 skipping SAM header line: @SQ SN:PGA_scaffold36224__1_contigs__length_12016 LN:12016 skipping SAM header line: @SQ SN:PGA_scaffold36240__1_contigs__length_12467 LN:12467 skipping SAM header line: @SQ SN:PGA_scaffold36242__1_contigs__length_19565 LN:19565 skipping SAM header line: @SQ SN:PGA_scaffold36262__1_contigs__length_16404 LN:16404 skipping SAM header line: @SQ SN:PGA_scaffold36269__1_contigs__length_15088 LN:15088 skipping SAM header line: @SQ SN:PGA_scaffold36302__1_contigs__length_13274 LN:13274 skipping SAM header line: @SQ SN:PGA_scaffold36317__1_contigs__length_14415 LN:14415 skipping SAM header line: @SQ SN:PGA_scaffold36323__1_contigs__length_14613 LN:14613 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold37015__1_contigs__length_12689 LN:12689 skipping SAM header line: @SQ SN:PGA_scaffold37016__1_contigs__length_16255 LN:16255 skipping SAM header line: @SQ SN:PGA_scaffold37025__1_contigs__length_20206 LN:20206 skipping SAM header line: @SQ SN:PGA_scaffold37035__1_contigs__length_28627 LN:28627 skipping SAM header line: @SQ SN:PGA_scaffold37208__1_contigs__length_10075 LN:10075 skipping SAM header line: @SQ SN:PGA_scaffold37310__1_contigs__length_23447 LN:23447 skipping SAM header line: @SQ SN:PGA_scaffold37328__1_contigs__length_10685 LN:10685 skipping SAM header line: @SQ SN:PGA_scaffold37557__1_contigs__length_10518 LN:10518 skipping SAM header line: @SQ SN:PGA_scaffold37565__1_contigs__length_11017 LN:11017 skipping SAM header line: @SQ SN:PGA_scaffold37572__1_contigs__length_13878 LN:13878 skipping SAM header line: @SQ SN:PGA_scaffold37574__1_contigs__length_18623 LN:18623 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold37759__1_contigs__length_13518 LN:13518 skipping SAM header line: @SQ SN:PGA_scaffold37762__1_contigs__length_12783 LN:12783 skipping SAM header line: @SQ SN:PGA_scaffold37763__1_contigs__length_19924 LN:19924 skipping SAM header line: @SQ SN:PGA_scaffold37800__1_contigs__length_26499 LN:26499 skipping SAM header line: @SQ SN:PGA_scaffold37819__1_contigs__length_12095 LN:12095 skipping SAM header line: @SQ SN:PGA_scaffold37829__1_contigs__length_16587 LN:16587 skipping SAM header line: @SQ SN:PGA_scaffold37955__1_contigs__length_10895 LN:10895 skipping SAM header line: @SQ SN:PGA_scaffold37958__1_contigs__length_14680 LN:14680 skipping SAM header line: @SQ SN:PGA_scaffold37961__1_contigs__length_10994 LN:10994 skipping SAM header line: @SQ SN:PGA_scaffold37965__1_contigs__length_13881 LN:13881 skipping SAM header line: @SQ SN:PGA_scaffold37969__1_contigs__length_16955 LN:16955 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold38021__1_contigs__length_12916 LN:12916 skipping SAM header line: @SQ SN:PGA_scaffold38022__1_contigs__length_17982 LN:17982 skipping SAM header line: @SQ SN:PGA_scaffold38042__1_contigs__length_11303 LN:11303 skipping SAM header line: @SQ SN:PGA_scaffold38072__1_contigs__length_12702 LN:12702 skipping SAM header line: @SQ SN:PGA_scaffold38085__1_contigs__length_16826 LN:16826 skipping SAM header line: @SQ SN:PGA_scaffold38114__1_contigs__length_18567 LN:18567 skipping SAM header line: @SQ SN:PGA_scaffold38121__1_contigs__length_22090 LN:22090 skipping SAM header line: @SQ SN:PGA_scaffold38122__1_contigs__length_13308 LN:13308 skipping SAM header line: @SQ SN:PGA_scaffold38128__1_contigs__length_16021 LN:16021 skipping SAM header line: @SQ SN:PGA_scaffold38134__1_contigs__length_17916 LN:17916 skipping SAM header line: @SQ SN:PGA_scaffold38138__1_contigs__length_12478 LN:12478 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold38190__1_contigs__length_10158 LN:10158 skipping SAM header line: @SQ SN:PGA_scaffold38195__1_contigs__length_10255 LN:10255 skipping SAM header line: @SQ SN:PGA_scaffold38204__1_contigs__length_13006 LN:13006 skipping SAM header line: @SQ SN:PGA_scaffold38206__1_contigs__length_11489 LN:11489 skipping SAM header line: @SQ SN:PGA_scaffold38209__1_contigs__length_10784 LN:10784 skipping SAM header line: @SQ SN:PGA_scaffold38210__1_contigs__length_11515 LN:11515 skipping SAM header line: @SQ SN:PGA_scaffold38219__1_contigs__length_11723 LN:11723 skipping SAM header line: @SQ SN:PGA_scaffold38226__1_contigs__length_16424 LN:16424 skipping SAM header line: @SQ SN:PGA_scaffold38230__1_contigs__length_10088 LN:10088 skipping SAM header line: @SQ SN:PGA_scaffold38233__1_contigs__length_20833 LN:20833 skipping SAM header line: @SQ SN:PGA_scaffold38239__1_contigs__length_13442 LN:13442 skipping SAM header line: @SQ SN:PGA_scaffold38242__1_contigs__length_24365 LN:24365 skipping SAM header line: @SQ SN:PGA_scaffold38250__1_contigs__length_13958 LN:13958 skipping SAM header line: @SQ SN:PGA_scaffold38254__1_contigs__length_11649 LN:11649 skipping SAM header line: @SQ SN:PGA_scaffold38259__1_contigs__length_20507 LN:20507 skipping SAM header line: @SQ SN:PGA_scaffold38263__1_contigs__length_11475 LN:11475 skipping SAM header line: @SQ SN:PGA_scaffold38269__1_contigs__length_14073 LN:14073 skipping SAM header line: @SQ SN:PGA_scaffold38270__1_contigs__length_17505 LN:17505 skipping SAM header line: @SQ SN:PGA_scaffold38280__1_contigs__length_10175 LN:10175 skipping SAM header line: @SQ SN:PGA_scaffold38283__1_contigs__length_11051 LN:11051 skipping SAM header line: @SQ SN:PGA_scaffold38288__1_contigs__length_12734 LN:12734 skipping SAM header line: @SQ SN:PGA_scaffold38294__1_contigs__length_10030 LN:10030 skipping SAM header line: @SQ SN:PGA_scaffold38309__1_contigs__length_15454 LN:15454 skipping SAM header line: @SQ SN:PGA_scaffold38310__1_contigs__length_15720 LN:15720 skipping SAM header line: @SQ SN:PGA_scaffold38318__1_contigs__length_12155 LN:12155 skipping SAM header line: @SQ SN:PGA_scaffold38319__1_contigs__length_10850 LN:10850 skipping SAM header line: @SQ SN:PGA_scaffold38322__1_contigs__length_10614 LN:10614 skipping SAM header line: @SQ SN:PGA_scaffold38327__1_contigs__length_14902 LN:14902 skipping SAM header line: @SQ SN:PGA_scaffold38337__1_contigs__length_10439 LN:10439 skipping SAM header line: @SQ SN:PGA_scaffold38344__1_contigs__length_10926 LN:10926 skipping SAM header line: @SQ SN:PGA_scaffold38350__1_contigs__length_16183 LN:16183 skipping SAM header line: @SQ SN:PGA_scaffold38353__1_contigs__length_14021 LN:14021 skipping SAM header line: @SQ SN:PGA_scaffold38355__1_contigs__length_23111 LN:23111 skipping SAM header line: @SQ SN:PGA_scaffold38360__1_contigs__length_11162 LN:11162 skipping SAM header line: @SQ SN:PGA_scaffold38363__1_contigs__length_12246 LN:12246 skipping SAM header line: @SQ SN:PGA_scaffold38367__1_contigs__length_10463 LN:10463 skipping SAM header line: @SQ SN:PGA_scaffold38380__1_contigs__length_12162 LN:12162 skipping SAM header line: @SQ SN:PGA_scaffold38382__1_contigs__length_23172 LN:23172 skipping SAM header line: @SQ SN:PGA_scaffold38386__1_contigs__length_12970 LN:12970 skipping SAM header line: @SQ SN:PGA_scaffold38399__1_contigs__length_15091 LN:15091 skipping SAM header line: @SQ SN:PGA_scaffold38402__1_contigs__length_11573 LN:11573 skipping SAM header line: @SQ SN:PGA_scaffold38403__1_contigs__length_13340 LN:13340 skipping SAM header line: @SQ SN:PGA_scaffold38411__1_contigs__length_11767 LN:11767 skipping SAM header line: @SQ SN:PGA_scaffold38412__1_contigs__length_12654 LN:12654 skipping SAM header line: @SQ SN:PGA_scaffold38416__1_contigs__length_27089 LN:27089 skipping SAM header line: @SQ SN:PGA_scaffold38417__1_contigs__length_39025 LN:39025 skipping SAM header line: @SQ SN:PGA_scaffold38421__1_contigs__length_31964 LN:31964 skipping SAM header line: @SQ SN:PGA_scaffold38423__1_contigs__length_10006 LN:10006 skipping SAM header line: @SQ SN:PGA_scaffold38424__1_contigs__length_10593 LN:10593 skipping SAM header line: @SQ SN:PGA_scaffold38425__1_contigs__length_11769 LN:11769 skipping SAM header line: @SQ SN:PGA_scaffold38428__1_contigs__length_10507 LN:10507 skipping SAM header line: @SQ SN:PGA_scaffold38433__1_contigs__length_13427 LN:13427 skipping SAM header line: @SQ SN:PGA_scaffold38434__1_contigs__length_10468 LN:10468 skipping SAM header line: @SQ SN:PGA_scaffold38439__1_contigs__length_10257 LN:10257 skipping SAM header line: @SQ SN:PGA_scaffold38440__1_contigs__length_26984 LN:26984 skipping SAM header line: @SQ SN:PGA_scaffold38441__1_contigs__length_11891 LN:11891 skipping SAM header line: @SQ SN:PGA_scaffold38442__1_contigs__length_20313 LN:20313 skipping SAM header line: @SQ SN:PGA_scaffold38443__1_contigs__length_12515 LN:12515 skipping SAM header line: @SQ SN:PGA_scaffold38450__1_contigs__length_11331 LN:11331 skipping SAM header line: @SQ SN:PGA_scaffold38452__1_contigs__length_10435 LN:10435 skipping SAM header line: @SQ SN:PGA_scaffold38456__1_contigs__length_19879 LN:19879 skipping SAM header line: @SQ SN:PGA_scaffold38461__1_contigs__length_15948 LN:15948 skipping SAM header line: @SQ SN:PGA_scaffold38463__1_contigs__length_20358 LN:20358 skipping SAM header line: @SQ SN:PGA_scaffold38465__1_contigs__length_10268 LN:10268 skipping SAM header line: @SQ SN:PGA_scaffold38466__1_contigs__length_14560 LN:14560 skipping SAM header line: @SQ SN:PGA_scaffold38479__1_contigs__length_20370 LN:20370 skipping SAM header line: @SQ SN:PGA_scaffold38481__1_contigs__length_11677 LN:11677 skipping SAM header line: @SQ SN:PGA_scaffold38483__1_contigs__length_10474 LN:10474 skipping SAM header line: @SQ SN:PGA_scaffold38487__1_contigs__length_17772 LN:17772 skipping SAM header line: @SQ SN:PGA_scaffold38488__1_contigs__length_24718 LN:24718 skipping SAM header line: @SQ SN:PGA_scaffold38496__1_contigs__length_12163 LN:12163 skipping SAM header line: @SQ SN:PGA_scaffold38501__1_contigs__length_15809 LN:15809 skipping SAM header line: @SQ SN:PGA_scaffold38502__1_contigs__length_13740 LN:13740 skipping SAM header line: @SQ SN:PGA_scaffold38512__1_contigs__length_10912 LN:10912 skipping SAM header line: @SQ SN:PGA_scaffold38558__1_contigs__length_14648 LN:14648 skipping SAM header line: @SQ SN:PGA_scaffold38566__1_contigs__length_14466 LN:14466 skipping SAM header line: @SQ SN:PGA_scaffold38571__1_contigs__length_13401 LN:13401 skipping SAM header line: @SQ SN:PGA_scaffold38576__1_contigs__length_12314 LN:12314 skipping SAM header line: @SQ SN:PGA_scaffold38578__1_contigs__length_13211 LN:13211 skipping SAM header line: @SQ SN:PGA_scaffold38581__1_contigs__length_16685 LN:16685 skipping SAM header line: @SQ SN:PGA_scaffold38587__1_contigs__length_12806 LN:12806 skipping SAM header line: @SQ SN:PGA_scaffold38590__1_contigs__length_21443 LN:21443 skipping SAM header line: @SQ SN:PGA_scaffold38595__1_contigs__length_10400 LN:10400 skipping SAM header line: @SQ SN:PGA_scaffold38604__1_contigs__length_11343 LN:11343 skipping SAM header line: @SQ SN:PGA_scaffold38608__1_contigs__length_14626 LN:14626 skipping SAM header line: @SQ SN:PGA_scaffold38613__1_contigs__length_12914 LN:12914 skipping SAM header line: @SQ SN:PGA_scaffold38621__1_contigs__length_12197 LN:12197 skipping SAM header line: @SQ SN:PGA_scaffold38623__1_contigs__length_12385 LN:12385 skipping SAM header line: @SQ SN:PGA_scaffold38634__1_contigs__length_14086 LN:14086 skipping SAM header line: @SQ SN:PGA_scaffold38635__1_contigs__length_15263 LN:15263 skipping SAM header line: @SQ SN:PGA_scaffold38637__1_contigs__length_46051 LN:46051 skipping SAM header line: @SQ SN:PGA_scaffold38647__1_contigs__length_21050 LN:21050 skipping SAM header line: @SQ SN:PGA_scaffold38649__1_contigs__length_14625 LN:14625 skipping SAM header line: @SQ SN:PGA_scaffold38653__1_contigs__length_12695 LN:12695 skipping SAM header line: @SQ SN:PGA_scaffold38657__1_contigs__length_15553 LN:15553 skipping SAM header line: @SQ SN:PGA_scaffold38663__1_contigs__length_38625 LN:38625 skipping SAM header line: @SQ SN:PGA_scaffold38668__1_contigs__length_10105 LN:10105 skipping SAM header line: @SQ SN:PGA_scaffold38676__1_contigs__length_10390 LN:10390 skipping SAM header line: @SQ SN:PGA_scaffold38678__1_contigs__length_11426 LN:11426 skipping SAM header line: @SQ SN:PGA_scaffold38679__1_contigs__length_11055 LN:11055 skipping SAM header line: @SQ SN:PGA_scaffold38684__1_contigs__length_12004 LN:12004 skipping SAM header line: @SQ SN:PGA_scaffold38689__1_contigs__length_19529 LN:19529 skipping SAM header line: @SQ SN:PGA_scaffold38690__1_contigs__length_11278 LN:11278 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold38857__1_contigs__length_18024 LN:18024 skipping SAM header line: @SQ SN:PGA_scaffold38862__1_contigs__length_15947 LN:15947 skipping SAM header line: @SQ SN:PGA_scaffold38865__1_contigs__length_23962 LN:23962 skipping SAM header line: @SQ SN:PGA_scaffold38877__1_contigs__length_11214 LN:11214 skipping SAM header line: @SQ SN:PGA_scaffold38891__1_contigs__length_11013 LN:11013 skipping SAM header line: @SQ SN:PGA_scaffold38900__1_contigs__length_13720 LN:13720 skipping SAM header line: @SQ SN:PGA_scaffold38913__1_contigs__length_12179 LN:12179 skipping SAM header line: @SQ SN:PGA_scaffold38918__1_contigs__length_10478 LN:10478 skipping SAM header line: @SQ SN:PGA_scaffold38931__1_contigs__length_13834 LN:13834 skipping SAM header line: @SQ SN:PGA_scaffold38935__1_contigs__length_23118 LN:23118 skipping SAM header line: @SQ SN:PGA_scaffold38974__1_contigs__length_15268 LN:15268 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold39143__1_contigs__length_14797 LN:14797 skipping SAM header line: @SQ SN:PGA_scaffold39152__1_contigs__length_12965 LN:12965 skipping SAM header line: @SQ SN:PGA_scaffold39159__1_contigs__length_13560 LN:13560 skipping SAM header line: @SQ SN:PGA_scaffold39161__1_contigs__length_14229 LN:14229 skipping SAM header line: @SQ SN:PGA_scaffold39162__1_contigs__length_16066 LN:16066 skipping SAM header line: @SQ SN:PGA_scaffold39164__1_contigs__length_21650 LN:21650 skipping SAM header line: @SQ SN:PGA_scaffold39177__1_contigs__length_10715 LN:10715 skipping SAM header line: @SQ SN:PGA_scaffold39255__1_contigs__length_19352 LN:19352 skipping SAM header line: @SQ SN:PGA_scaffold39257__1_contigs__length_10310 LN:10310 skipping SAM header line: @SQ SN:PGA_scaffold39274__1_contigs__length_13299 LN:13299 skipping SAM header line: @SQ SN:PGA_scaffold39285__1_contigs__length_10270 LN:10270 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold39339__1_contigs__length_12423 LN:12423 skipping SAM header line: @SQ SN:PGA_scaffold39341__1_contigs__length_10578 LN:10578 skipping SAM header line: @SQ SN:PGA_scaffold39342__1_contigs__length_14500 LN:14500 skipping SAM header line: @SQ SN:PGA_scaffold39343__1_contigs__length_12541 LN:12541 skipping SAM header line: @SQ SN:PGA_scaffold39344__1_contigs__length_23639 LN:23639 skipping SAM header line: @SQ SN:PGA_scaffold39347__1_contigs__length_20746 LN:20746 skipping SAM header line: @SQ SN:PGA_scaffold39348__1_contigs__length_10355 LN:10355 skipping SAM header line: @SQ SN:PGA_scaffold39349__1_contigs__length_30049 LN:30049 skipping SAM header line: @SQ SN:PGA_scaffold39350__1_contigs__length_17650 LN:17650 skipping SAM header line: @SQ SN:PGA_scaffold39351__1_contigs__length_10146 LN:10146 skipping SAM header line: @SQ SN:PGA_scaffold39352__1_contigs__length_11293 LN:11293 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold39386__1_contigs__length_46727 LN:46727 skipping SAM header line: @SQ SN:PGA_scaffold39502__1_contigs__length_10659 LN:10659 skipping SAM header line: @SQ SN:PGA_scaffold39549__1_contigs__length_10976 LN:10976 skipping SAM header line: @SQ SN:PGA_scaffold39574__1_contigs__length_11938 LN:11938 skipping SAM header line: @SQ SN:PGA_scaffold39829__1_contigs__length_10989 LN:10989 skipping SAM header line: @SQ SN:PGA_scaffold39887__1_contigs__length_11586 LN:11586 skipping SAM header line: @SQ SN:PGA_scaffold39997__1_contigs__length_10540 LN:10540 skipping SAM header line: @SQ SN:PGA_scaffold40062__1_contigs__length_10248 LN:10248 skipping SAM header line: @SQ SN:PGA_scaffold40116__1_contigs__length_11099 LN:11099 skipping SAM header line: @SQ SN:PGA_scaffold40121__1_contigs__length_10269 LN:10269 skipping SAM header line: @SQ SN:PGA_scaffold40139__1_contigs__length_11075 LN:11075 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold40657__1_contigs__length_11339 LN:11339 skipping SAM header line: @SQ SN:PGA_scaffold40663__1_contigs__length_11822 LN:11822 skipping SAM header line: @SQ SN:PGA_scaffold40664__1_contigs__length_12209 LN:12209 skipping SAM header line: @SQ SN:PGA_scaffold40666__1_contigs__length_11131 LN:11131 skipping SAM header line: @SQ SN:PGA_scaffold40680__1_contigs__length_10046 LN:10046 skipping SAM header line: @SQ SN:PGA_scaffold40684__1_contigs__length_10025 LN:10025 skipping SAM header line: @SQ SN:PGA_scaffold40695__1_contigs__length_10766 LN:10766 skipping SAM header line: @SQ SN:PGA_scaffold40708__1_contigs__length_11498 LN:11498 skipping SAM header line: @SQ SN:PGA_scaffold40737__1_contigs__length_11404 LN:11404 skipping SAM header line: @SQ SN:PGA_scaffold40799__1_contigs__length_10762 LN:10762 skipping SAM header line: @SQ SN:PGA_scaffold40806__1_contigs__length_11096 LN:11096 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold40911__1_contigs__length_35761 LN:35761 skipping SAM header line: @SQ SN:PGA_scaffold40912__1_contigs__length_20110 LN:20110 skipping SAM header line: @SQ SN:PGA_scaffold40913__1_contigs__length_12423 LN:12423 skipping SAM header line: @SQ SN:PGA_scaffold40914__1_contigs__length_21603 LN:21603 skipping SAM header line: @SQ SN:PGA_scaffold40915__1_contigs__length_12074 LN:12074 skipping SAM header line: @SQ SN:PGA_scaffold40925__1_contigs__length_21173 LN:21173 skipping SAM header line: @SQ SN:PGA_scaffold40929__1_contigs__length_17331 LN:17331 skipping SAM header line: @SQ SN:PGA_scaffold40943__1_contigs__length_14566 LN:14566 skipping SAM header line: @SQ SN:PGA_scaffold40949__1_contigs__length_17824 LN:17824 skipping SAM header line: @SQ SN:PGA_scaffold40970__1_contigs__length_23922 LN:23922 skipping SAM header line: @SQ SN:PGA_scaffold40974__1_contigs__length_17744 LN:17744 skipping SAM header line: @SQ SN:PGA_scaffold40987__1_contigs__length_14949 LN:14949 skipping SAM header line: @SQ SN:PGA_scaffold40990__1_contigs__length_11299 LN:11299 skipping SAM header line: @SQ SN:PGA_scaffold41006__1_contigs__length_13382 LN:13382 skipping SAM header line: @SQ SN:PGA_scaffold41008__1_contigs__length_16182 LN:16182 skipping SAM header line: @SQ SN:PGA_scaffold41009__1_contigs__length_11532 LN:11532 skipping SAM header line: @SQ SN:PGA_scaffold41012__1_contigs__length_11025 LN:11025 skipping SAM header line: @SQ SN:PGA_scaffold41014__1_contigs__length_10789 LN:10789 skipping SAM header line: @SQ SN:PGA_scaffold41033__1_contigs__length_13548 LN:13548 skipping SAM header line: @SQ SN:PGA_scaffold41042__1_contigs__length_25339 LN:25339 skipping SAM header line: @SQ SN:PGA_scaffold41068__1_contigs__length_11594 LN:11594 skipping SAM header line: @SQ SN:PGA_scaffold41072__1_contigs__length_20445 LN:20445 skipping SAM header line: @SQ SN:PGA_scaffold41078__1_contigs__length_14071 LN:14071 skipping SAM header line: @SQ SN:PGA_scaffold41080__1_contigs__length_10023 LN:10023 skipping SAM header line: @SQ SN:PGA_scaffold41081__1_contigs__length_29117 LN:29117 skipping SAM header line: @SQ SN:PGA_scaffold41083__1_contigs__length_12750 LN:12750 skipping SAM header line: @SQ SN:PGA_scaffold41087__1_contigs__length_14611 LN:14611 skipping SAM header line: @SQ SN:PGA_scaffold41095__1_contigs__length_14007 LN:14007 skipping SAM header line: @SQ SN:PGA_scaffold41096__1_contigs__length_40847 LN:40847 skipping SAM header line: @SQ SN:PGA_scaffold41099__1_contigs__length_12797 LN:12797 skipping SAM header line: @SQ SN:PGA_scaffold41100__1_contigs__length_10507 LN:10507 skipping SAM header line: @SQ SN:PGA_scaffold41101__1_contigs__length_11447 LN:11447 skipping SAM header line: @SQ SN:PGA_scaffold41104__1_contigs__length_12442 LN:12442 skipping SAM header line: @SQ SN:PGA_scaffold41109__1_contigs__length_11097 LN:11097 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold41298__1_contigs__length_11269 LN:11269 skipping SAM header line: @SQ SN:PGA_scaffold41302__1_contigs__length_11342 LN:11342 skipping SAM header line: @SQ SN:PGA_scaffold41321__1_contigs__length_12155 LN:12155 skipping SAM header line: @SQ SN:PGA_scaffold41330__1_contigs__length_10151 LN:10151 skipping SAM header line: @SQ SN:PGA_scaffold41342__1_contigs__length_23284 LN:23284 skipping SAM header line: @SQ SN:PGA_scaffold41345__1_contigs__length_13409 LN:13409 skipping SAM header line: @SQ SN:PGA_scaffold41350__1_contigs__length_13339 LN:13339 skipping SAM header line: @SQ SN:PGA_scaffold41354__1_contigs__length_12778 LN:12778 skipping SAM header line: @SQ SN:PGA_scaffold41357__1_contigs__length_21814 LN:21814 skipping SAM header line: @SQ SN:PGA_scaffold41388__1_contigs__length_12474 LN:12474 skipping SAM header line: @SQ SN:PGA_scaffold41397__1_contigs__length_14402 LN:14402 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold41536__1_contigs__length_12282 LN:12282 skipping SAM header line: @SQ SN:PGA_scaffold41541__1_contigs__length_10886 LN:10886 skipping SAM header line: @SQ SN:PGA_scaffold41548__1_contigs__length_10737 LN:10737 skipping SAM header line: @SQ SN:PGA_scaffold41590__1_contigs__length_12538 LN:12538 skipping SAM header line: @SQ SN:PGA_scaffold41620__1_contigs__length_14891 LN:14891 skipping SAM header line: @SQ SN:PGA_scaffold41653__1_contigs__length_14222 LN:14222 skipping SAM header line: @SQ SN:PGA_scaffold41660__1_contigs__length_13772 LN:13772 skipping SAM header line: @SQ SN:PGA_scaffold41669__1_contigs__length_18528 LN:18528 skipping SAM header line: @SQ SN:PGA_scaffold41687__1_contigs__length_11364 LN:11364 skipping SAM header line: @SQ SN:PGA_scaffold41708__1_contigs__length_34929 LN:34929 skipping SAM header line: @SQ SN:PGA_scaffold41755__1_contigs__length_23292 LN:23292 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold42091__1_contigs__length_14316 LN:14316 skipping SAM header line: @SQ SN:PGA_scaffold42135__1_contigs__length_29066 LN:29066 skipping SAM header line: @SQ SN:PGA_scaffold42252__1_contigs__length_10954 LN:10954 skipping SAM header line: @SQ SN:PGA_scaffold42298__1_contigs__length_12626 LN:12626 skipping SAM header line: @SQ SN:PGA_scaffold42310__1_contigs__length_11054 LN:11054 skipping SAM header line: @SQ SN:PGA_scaffold42329__1_contigs__length_34583 LN:34583 skipping SAM header line: @SQ SN:PGA_scaffold42351__1_contigs__length_13553 LN:13553 skipping SAM header line: @SQ SN:PGA_scaffold42382__1_contigs__length_13571 LN:13571 skipping SAM header line: @SQ SN:PGA_scaffold42499__1_contigs__length_10579 LN:10579 skipping SAM header line: @SQ SN:PGA_scaffold42541__1_contigs__length_10935 LN:10935 skipping SAM header line: @SQ SN:PGA_scaffold42577__1_contigs__length_10955 LN:10955 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold42814__1_contigs__length_13257 LN:13257 skipping SAM header line: @SQ SN:PGA_scaffold42847__1_contigs__length_13209 LN:13209 skipping SAM header line: @SQ SN:PGA_scaffold42854__1_contigs__length_23923 LN:23923 skipping SAM header line: @SQ SN:PGA_scaffold42864__1_contigs__length_11976 LN:11976 skipping SAM header line: @SQ SN:PGA_scaffold42885__1_contigs__length_20310 LN:20310 skipping SAM header line: @SQ SN:PGA_scaffold42905__1_contigs__length_11177 LN:11177 skipping SAM header line: @SQ SN:PGA_scaffold42906__1_contigs__length_11103 LN:11103 skipping SAM header line: @SQ SN:PGA_scaffold42918__1_contigs__length_14826 LN:14826 skipping SAM header line: @SQ SN:PGA_scaffold42929__1_contigs__length_13253 LN:13253 skipping SAM header line: @SQ SN:PGA_scaffold42946__1_contigs__length_15943 LN:15943 skipping SAM header line: @SQ SN:PGA_scaffold42947__1_contigs__length_15502 LN:15502 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold43795__1_contigs__length_18674 LN:18674 skipping SAM header line: @SQ SN:PGA_scaffold43796__1_contigs__length_10165 LN:10165 skipping SAM header line: @SQ SN:PGA_scaffold43804__1_contigs__length_22294 LN:22294 skipping SAM header line: @SQ SN:PGA_scaffold43805__1_contigs__length_15182 LN:15182 skipping SAM header line: @SQ SN:PGA_scaffold43807__1_contigs__length_14516 LN:14516 skipping SAM header line: @SQ SN:PGA_scaffold43812__1_contigs__length_11137 LN:11137 skipping SAM header line: @SQ SN:PGA_scaffold43814__1_contigs__length_11025 LN:11025 skipping SAM header line: @SQ SN:PGA_scaffold43828__1_contigs__length_21394 LN:21394 skipping SAM header line: @SQ SN:PGA_scaffold43830__1_contigs__length_13765 LN:13765 skipping SAM header line: @SQ SN:PGA_scaffold43832__1_contigs__length_14372 LN:14372 skipping SAM header line: @SQ SN:PGA_scaffold43835__1_contigs__length_13787 LN:13787 skipping SAM header line: @SQ SN:PGA_scaffold43842__1_contigs__length_17494 LN:17494 skipping SAM header line: @SQ SN:PGA_scaffold43846__1_contigs__length_11617 LN:11617 skipping SAM header line: @SQ SN:PGA_scaffold43847__1_contigs__length_26800 LN:26800 skipping SAM header line: @SQ SN:PGA_scaffold43848__1_contigs__length_11667 LN:11667 skipping SAM header line: @SQ SN:PGA_scaffold43858__1_contigs__length_18198 LN:18198 skipping SAM header line: @SQ SN:PGA_scaffold43859__1_contigs__length_14712 LN:14712 skipping SAM header line: @SQ SN:PGA_scaffold43863__1_contigs__length_11680 LN:11680 skipping SAM header line: @SQ SN:PGA_scaffold43864__1_contigs__length_13828 LN:13828 skipping SAM header line: @SQ SN:PGA_scaffold43873__1_contigs__length_11597 LN:11597 skipping SAM header line: @SQ SN:PGA_scaffold43880__1_contigs__length_13711 LN:13711 skipping SAM header line: @SQ SN:PGA_scaffold43882__1_contigs__length_21033 LN:21033 skipping SAM header line: @SQ SN:PGA_scaffold43885__1_contigs__length_15447 LN:15447 skipping SAM header line: @SQ SN:PGA_scaffold43887__1_contigs__length_16436 LN:16436 skipping SAM header line: @SQ SN:PGA_scaffold43888__1_contigs__length_10222 LN:10222 skipping SAM header line: @SQ SN:PGA_scaffold43889__1_contigs__length_15034 LN:15034 skipping SAM header line: @SQ SN:PGA_scaffold43893__1_contigs__length_39100 LN:39100 skipping SAM header line: @SQ SN:PGA_scaffold43898__1_contigs__length_11155 LN:11155 skipping SAM header line: @SQ SN:PGA_scaffold43901__1_contigs__length_18134 LN:18134 skipping SAM header line: @SQ SN:PGA_scaffold43902__1_contigs__length_16568 LN:16568 skipping SAM header line: @SQ SN:PGA_scaffold43904__1_contigs__length_12306 LN:12306 skipping SAM header line: @SQ SN:PGA_scaffold43907__1_contigs__length_14416 LN:14416 skipping SAM header line: @SQ SN:PGA_scaffold43908__1_contigs__length_25134 LN:25134 skipping SAM header line: @SQ SN:PGA_scaffold43910__1_contigs__length_10970 LN:10970 skipping SAM header line: @SQ SN:PGA_scaffold43911__1_contigs__length_10420 LN:10420 skipping SAM header line: @SQ SN:PGA_scaffold43915__1_contigs__length_13758 LN:13758 skipping SAM header line: @SQ SN:PGA_scaffold43917__1_contigs__length_12589 LN:12589 skipping SAM header line: @SQ SN:PGA_scaffold43918__1_contigs__length_27939 LN:27939 skipping SAM header line: @SQ SN:PGA_scaffold43919__1_contigs__length_14490 LN:14490 skipping SAM header line: @SQ SN:PGA_scaffold43922__1_contigs__length_11802 LN:11802 skipping SAM header line: @SQ SN:PGA_scaffold43924__1_contigs__length_15871 LN:15871 skipping SAM header line: @SQ SN:PGA_scaffold43927__1_contigs__length_31151 LN:31151 skipping SAM header line: @SQ SN:PGA_scaffold43929__1_contigs__length_14737 LN:14737 skipping SAM header line: @SQ SN:PGA_scaffold43930__1_contigs__length_21082 LN:21082 skipping SAM header line: @SQ SN:PGA_scaffold43932__1_contigs__length_25404 LN:25404 skipping SAM header line: @SQ SN:PGA_scaffold43934__1_contigs__length_12429 LN:12429 skipping SAM header line: @SQ SN:PGA_scaffold43937__1_contigs__length_13314 LN:13314 skipping SAM header line: @SQ SN:PGA_scaffold43938__1_contigs__length_34922 LN:34922 skipping SAM header line: @SQ SN:PGA_scaffold43940__1_contigs__length_31112 LN:31112 skipping SAM header line: @SQ SN:PGA_scaffold43942__1_contigs__length_15205 LN:15205 skipping SAM header line: @SQ SN:PGA_scaffold43944__1_contigs__length_11859 LN:11859 skipping SAM header line: @SQ SN:PGA_scaffold43948__1_contigs__length_26467 LN:26467 skipping SAM header line: @SQ SN:PGA_scaffold43949__1_contigs__length_19513 LN:19513 skipping SAM header line: @SQ SN:PGA_scaffold43950__1_contigs__length_23886 LN:23886 skipping SAM header line: @SQ SN:PGA_scaffold43956__1_contigs__length_34824 LN:34824 skipping SAM header line: @SQ SN:PGA_scaffold43957__1_contigs__length_14511 LN:14511 skipping SAM header line: @SQ SN:PGA_scaffold43960__1_contigs__length_22149 LN:22149 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold44003__1_contigs__length_13046 LN:13046 skipping SAM header line: @SQ SN:PGA_scaffold44004__1_contigs__length_56426 LN:56426 skipping SAM header line: @SQ SN:PGA_scaffold44007__1_contigs__length_21109 LN:21109 skipping SAM header line: @SQ SN:PGA_scaffold44014__1_contigs__length_14125 LN:14125 skipping SAM header line: @SQ SN:PGA_scaffold44018__1_contigs__length_13059 LN:13059 skipping SAM header line: @SQ SN:PGA_scaffold44020__1_contigs__length_15718 LN:15718 skipping SAM header line: @SQ SN:PGA_scaffold44021__1_contigs__length_51740 LN:51740 skipping SAM header line: @SQ SN:PGA_scaffold44022__1_contigs__length_41140 LN:41140 skipping SAM header line: @SQ SN:PGA_scaffold44023__1_contigs__length_16536 LN:16536 skipping SAM header line: @SQ SN:PGA_scaffold44025__1_contigs__length_11342 LN:11342 skipping SAM header line: @SQ SN:PGA_scaffold44033__1_contigs__length_12362 LN:12362 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold44068__1_contigs__length_13877 LN:13877 skipping SAM header line: @SQ SN:PGA_scaffold44073__1_contigs__length_36469 LN:36469 skipping SAM header line: @SQ SN:PGA_scaffold44075__1_contigs__length_12127 LN:12127 skipping SAM header line: @SQ SN:PGA_scaffold44090__1_contigs__length_19068 LN:19068 skipping SAM header line: @SQ SN:PGA_scaffold44091__1_contigs__length_10361 LN:10361 skipping SAM header line: @SQ SN:PGA_scaffold44096__1_contigs__length_10296 LN:10296 skipping SAM header line: @SQ SN:PGA_scaffold44113__1_contigs__length_30304 LN:30304 skipping SAM header line: @SQ SN:PGA_scaffold44114__1_contigs__length_15123 LN:15123 skipping SAM header line: @SQ SN:PGA_scaffold44116__1_contigs__length_16230 LN:16230 skipping SAM header line: @SQ SN:PGA_scaffold44119__1_contigs__length_18758 LN:18758 skipping SAM header line: @SQ SN:PGA_scaffold44126__1_contigs__length_14303 LN:14303 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold44246__1_contigs__length_16550 LN:16550 skipping SAM header line: @SQ SN:PGA_scaffold44267__1_contigs__length_13671 LN:13671 skipping SAM header line: @SQ SN:PGA_scaffold44278__1_contigs__length_10571 LN:10571 skipping SAM header line: @SQ SN:PGA_scaffold44279__1_contigs__length_11233 LN:11233 skipping SAM header line: @SQ SN:PGA_scaffold44285__1_contigs__length_11408 LN:11408 skipping SAM header line: @SQ SN:PGA_scaffold44287__1_contigs__length_54447 LN:54447 skipping SAM header line: @SQ SN:PGA_scaffold44288__1_contigs__length_13802 LN:13802 skipping SAM header line: @SQ SN:PGA_scaffold44289__1_contigs__length_12854 LN:12854 skipping SAM header line: @SQ SN:PGA_scaffold44290__1_contigs__length_14814 LN:14814 skipping SAM header line: @SQ SN:PGA_scaffold44291__1_contigs__length_14610 LN:14610 skipping SAM header line: @SQ SN:PGA_scaffold44293__1_contigs__length_18891 LN:18891 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold45156__1_contigs__length_12873 LN:12873 skipping SAM header line: @SQ SN:PGA_scaffold45158__1_contigs__length_22592 LN:22592 skipping SAM header line: @SQ SN:PGA_scaffold45162__1_contigs__length_16753 LN:16753 skipping SAM header line: @SQ SN:PGA_scaffold45166__1_contigs__length_11394 LN:11394 skipping SAM header line: @SQ SN:PGA_scaffold45168__1_contigs__length_12437 LN:12437 skipping SAM header line: @SQ SN:PGA_scaffold45169__1_contigs__length_30495 LN:30495 skipping SAM header line: @SQ SN:PGA_scaffold45175__1_contigs__length_12339 LN:12339 skipping SAM header line: @SQ SN:PGA_scaffold45182__1_contigs__length_13821 LN:13821 skipping SAM header line: @SQ SN:PGA_scaffold45183__1_contigs__length_18254 LN:18254 skipping SAM header line: @SQ SN:PGA_scaffold45185__1_contigs__length_14560 LN:14560 skipping SAM header line: @SQ SN:PGA_scaffold45193__1_contigs__length_10659 LN:10659 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold45325__1_contigs__length_10737 LN:10737 skipping SAM header line: @SQ SN:PGA_scaffold45365__1_contigs__length_11419 LN:11419 skipping SAM header line: @SQ SN:PGA_scaffold45377__1_contigs__length_22605 LN:22605 skipping SAM header line: @SQ SN:PGA_scaffold45385__1_contigs__length_18310 LN:18310 skipping SAM header line: @SQ SN:PGA_scaffold45386__1_contigs__length_10281 LN:10281 skipping SAM header line: @SQ SN:PGA_scaffold45387__1_contigs__length_14917 LN:14917 skipping SAM header line: @SQ SN:PGA_scaffold45389__1_contigs__length_20491 LN:20491 skipping SAM header line: @SQ SN:PGA_scaffold45390__1_contigs__length_14774 LN:14774 skipping SAM header line: @SQ SN:PGA_scaffold45411__1_contigs__length_12224 LN:12224 skipping SAM header line: @SQ SN:PGA_scaffold45412__1_contigs__length_12664 LN:12664 skipping SAM header line: @SQ SN:PGA_scaffold45486__1_contigs__length_25222 LN:25222 skipping SAM header line: @SQ SN:PGA_scaffold45503__1_contigs__length_15625 LN:15625 skipping SAM header line: @SQ SN:PGA_scaffold45511__1_contigs__length_14589 LN:14589 skipping SAM header line: @SQ SN:PGA_scaffold45516__1_contigs__length_10508 LN:10508 skipping SAM header line: @SQ SN:PGA_scaffold45521__1_contigs__length_10438 LN:10438 skipping SAM header line: @SQ SN:PGA_scaffold45528__1_contigs__length_15892 LN:15892 skipping SAM header line: @SQ SN:PGA_scaffold45532__1_contigs__length_22958 LN:22958 skipping SAM header line: @SQ SN:PGA_scaffold45533__1_contigs__length_12210 LN:12210 skipping SAM header line: @SQ SN:PGA_scaffold45535__1_contigs__length_14339 LN:14339 skipping SAM header line: @SQ SN:PGA_scaffold45545__1_contigs__length_12625 LN:12625 skipping SAM header line: @SQ SN:PGA_scaffold45550__1_contigs__length_12077 LN:12077 skipping SAM header line: @SQ SN:PGA_scaffold45551__1_contigs__length_12219 LN:12219 skipping SAM header line: @SQ SN:PGA_scaffold45554__1_contigs__length_13664 LN:13664 skipping SAM header line: @SQ SN:PGA_scaffold45570__1_contigs__length_13648 LN:13648 skipping SAM header line: @SQ SN:PGA_scaffold45571__1_contigs__length_14459 LN:14459 skipping SAM header line: @SQ SN:PGA_scaffold45577__1_contigs__length_18261 LN:18261 skipping SAM header line: @SQ SN:PGA_scaffold45579__1_contigs__length_10948 LN:10948 skipping SAM header line: @SQ SN:PGA_scaffold45587__1_contigs__length_14889 LN:14889 skipping SAM header line: @SQ SN:PGA_scaffold45592__1_contigs__length_12383 LN:12383 skipping SAM header line: @SQ SN:PGA_scaffold45595__1_contigs__length_16448 LN:16448 skipping SAM header line: @SQ SN:PGA_scaffold45599__1_contigs__length_33507 LN:33507 skipping SAM header line: @SQ SN:PGA_scaffold45601__1_contigs__length_12173 LN:12173 skipping SAM header line: @SQ SN:PGA_scaffold45609__1_contigs__length_12561 LN:12561 skipping SAM header line: @SQ SN:PGA_scaffold45616__1_contigs__length_11740 LN:11740 skipping SAM header line: @SQ SN:PGA_scaffold45618__1_contigs__length_15583 LN:15583 skipping SAM header line: @SQ SN:PGA_scaffold45621__1_contigs__length_37806 LN:37806 skipping SAM header line: @SQ SN:PGA_scaffold45627__1_contigs__length_12583 LN:12583 skipping SAM header line: @SQ SN:PGA_scaffold45633__1_contigs__length_16457 LN:16457 skipping SAM header line: @SQ SN:PGA_scaffold45663__1_contigs__length_10214 LN:10214 skipping SAM header line: @SQ SN:PGA_scaffold45670__1_contigs__length_21879 LN:21879 skipping SAM header line: @SQ SN:PGA_scaffold45672__1_contigs__length_10316 LN:10316 skipping SAM header line: @SQ SN:PGA_scaffold45683__1_contigs__length_11241 LN:11241 skipping SAM header line: @SQ SN:PGA_scaffold45688__1_contigs__length_19313 LN:19313 skipping SAM header line: @SQ SN:PGA_scaffold45694__1_contigs__length_10898 LN:10898 skipping SAM header line: @SQ SN:PGA_scaffold45700__1_contigs__length_18962 LN:18962 skipping SAM header line: @SQ SN:PGA_scaffold45713__1_contigs__length_33502 LN:33502 skipping SAM header line: @SQ SN:PGA_scaffold45715__1_contigs__length_20864 LN:20864 skipping SAM header line: @SQ SN:PGA_scaffold45722__1_contigs__length_12930 LN:12930 skipping SAM header line: @SQ SN:PGA_scaffold45730__1_contigs__length_19999 LN:19999 skipping SAM header line: @SQ SN:PGA_scaffold45731__1_contigs__length_17000 LN:17000 skipping SAM header line: @SQ SN:PGA_scaffold45732__1_contigs__length_31304 LN:31304 skipping SAM header line: @SQ SN:PGA_scaffold45734__1_contigs__length_11461 LN:11461 skipping SAM header line: @SQ SN:PGA_scaffold45755__1_contigs__length_21848 LN:21848 skipping SAM header line: @SQ SN:PGA_scaffold45760__1_contigs__length_12457 LN:12457 skipping SAM header line: @SQ SN:PGA_scaffold45762__1_contigs__length_13890 LN:13890 skipping SAM header line: @SQ SN:PGA_scaffold45776__1_contigs__length_11951 LN:11951 skipping SAM header line: @SQ SN:PGA_scaffold45803__1_contigs__length_17472 LN:17472 skipping SAM header line: @SQ SN:PGA_scaffold45814__1_contigs__length_12520 LN:12520 skipping SAM header line: @SQ SN:PGA_scaffold45824__1_contigs__length_17140 LN:17140 skipping SAM header line: @SQ SN:PGA_scaffold45838__1_contigs__length_39783 LN:39783 skipping SAM header line: @SQ SN:PGA_scaffold45839__1_contigs__length_13950 LN:13950 skipping SAM header line: @SQ SN:PGA_scaffold45841__1_contigs__length_13165 LN:13165 skipping SAM header line: @SQ SN:PGA_scaffold45844__1_contigs__length_12309 LN:12309 skipping SAM header line: @SQ SN:PGA_scaffold45846__1_contigs__length_16742 LN:16742 skipping SAM header line: @SQ SN:PGA_scaffold45848__1_contigs__length_17564 LN:17564 skipping SAM header line: @SQ SN:PGA_scaffold45849__1_contigs__length_23556 LN:23556 skipping SAM header line: @SQ SN:PGA_scaffold45855__1_contigs__length_18943 LN:18943 skipping SAM header line: @SQ SN:PGA_scaffold45858__1_contigs__length_13196 LN:13196 skipping SAM header line: @SQ SN:PGA_scaffold45862__1_contigs__length_26981 LN:26981 skipping SAM header line: @SQ SN:PGA_scaffold45863__1_contigs__length_16055 LN:16055 skipping SAM header line: @SQ SN:PGA_scaffold45865__1_contigs__length_10820 LN:10820 skipping SAM header line: @SQ SN:PGA_scaffold45867__1_contigs__length_15272 LN:15272 skipping SAM header line: @SQ SN:PGA_scaffold45868__1_contigs__length_11011 LN:11011 skipping SAM header line: @SQ SN:PGA_scaffold45878__1_contigs__length_15134 LN:15134 skipping SAM header line: @SQ SN:PGA_scaffold45879__1_contigs__length_19763 LN:19763 skipping SAM header line: @SQ SN:PGA_scaffold45880__1_contigs__length_10579 LN:10579 skipping SAM header line: @SQ SN:PGA_scaffold45887__1_contigs__length_18573 LN:18573 skipping SAM header line: @SQ SN:PGA_scaffold45892__1_contigs__length_17344 LN:17344 skipping SAM header line: @SQ SN:PGA_scaffold45928__1_contigs__length_12266 LN:12266 skipping SAM header line: @SQ SN:PGA_scaffold45933__1_contigs__length_21282 LN:21282 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold45994__1_contigs__length_11616 LN:11616 skipping SAM header line: @SQ SN:PGA_scaffold45997__1_contigs__length_11185 LN:11185 skipping SAM header line: @SQ SN:PGA_scaffold45998__1_contigs__length_21348 LN:21348 skipping SAM header line: @SQ SN:PGA_scaffold46006__1_contigs__length_30342 LN:30342 skipping SAM header line: @SQ SN:PGA_scaffold46008__1_contigs__length_10879 LN:10879 skipping SAM header line: @SQ SN:PGA_scaffold46009__1_contigs__length_14903 LN:14903 skipping SAM header line: @SQ SN:PGA_scaffold46012__1_contigs__length_16798 LN:16798 skipping SAM header line: @SQ SN:PGA_scaffold46014__1_contigs__length_11679 LN:11679 skipping SAM header line: @SQ SN:PGA_scaffold46015__1_contigs__length_10165 LN:10165 skipping SAM header line: @SQ SN:PGA_scaffold46016__1_contigs__length_47336 LN:47336 skipping SAM header line: @SQ SN:PGA_scaffold46017__1_contigs__length_32344 LN:32344 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold46049__1_contigs__length_11946 LN:11946 skipping SAM header line: @SQ SN:PGA_scaffold46050__1_contigs__length_13835 LN:13835 skipping SAM header line: @SQ SN:PGA_scaffold46054__1_contigs__length_18433 LN:18433 skipping SAM header line: @SQ SN:PGA_scaffold46063__1_contigs__length_26968 LN:26968 skipping SAM header line: @SQ SN:PGA_scaffold46065__1_contigs__length_14969 LN:14969 skipping SAM header line: @SQ SN:PGA_scaffold46066__1_contigs__length_26528 LN:26528 skipping SAM header line: @SQ SN:PGA_scaffold46071__1_contigs__length_20197 LN:20197 skipping SAM header line: @SQ SN:PGA_scaffold46072__1_contigs__length_10805 LN:10805 skipping SAM header line: @SQ SN:PGA_scaffold46073__1_contigs__length_36458 LN:36458 skipping SAM header line: @SQ SN:PGA_scaffold46074__1_contigs__length_12206 LN:12206 skipping SAM header line: @SQ SN:PGA_scaffold46075__1_contigs__length_16106 LN:16106 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold46090__1_contigs__length_19063 LN:19063 skipping SAM header line: @SQ SN:PGA_scaffold46091__1_contigs__length_30400 LN:30400 skipping SAM header line: @SQ SN:PGA_scaffold46093__1_contigs__length_14766 LN:14766 skipping SAM header line: @SQ SN:PGA_scaffold46094__1_contigs__length_11199 LN:11199 skipping SAM header line: @SQ SN:PGA_scaffold46100__1_contigs__length_14531 LN:14531 skipping SAM header line: @SQ SN:PGA_scaffold46102__1_contigs__length_10290 LN:10290 skipping SAM header line: @SQ SN:PGA_scaffold46105__1_contigs__length_11384 LN:11384 skipping SAM header line: @SQ SN:PGA_scaffold46106__1_contigs__length_19807 LN:19807 skipping SAM header line: @SQ SN:PGA_scaffold46108__1_contigs__length_30532 LN:30532 skipping SAM header line: @SQ SN:PGA_scaffold46113__1_contigs__length_16988 LN:16988 skipping SAM header line: @SQ SN:PGA_scaffold46117__1_contigs__length_10713 LN:10713 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold46139__1_contigs__length_39029 LN:39029 skipping SAM header line: @SQ SN:PGA_scaffold46140__1_contigs__length_14947 LN:14947 skipping SAM header line: @SQ SN:PGA_scaffold46144__1_contigs__length_30043 LN:30043 skipping SAM header line: @SQ SN:PGA_scaffold46146__1_contigs__length_16709 LN:16709 skipping SAM header line: @SQ SN:PGA_scaffold46149__1_contigs__length_17955 LN:17955 skipping SAM header line: @SQ SN:PGA_scaffold46150__1_contigs__length_17440 LN:17440 skipping SAM header line: @SQ SN:PGA_scaffold46151__1_contigs__length_14283 LN:14283 skipping SAM header line: @SQ SN:PGA_scaffold46154__1_contigs__length_14242 LN:14242 skipping SAM header line: @SQ SN:PGA_scaffold46157__1_contigs__length_21667 LN:21667 skipping SAM header line: @SQ SN:PGA_scaffold46169__1_contigs__length_22331 LN:22331 skipping SAM header line: @SQ SN:PGA_scaffold46171__1_contigs__length_21827 LN:21827 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold46228__1_contigs__length_30260 LN:30260 skipping SAM header line: @SQ SN:PGA_scaffold46229__1_contigs__length_11362 LN:11362 skipping SAM header line: @SQ SN:PGA_scaffold46230__1_contigs__length_14103 LN:14103 skipping SAM header line: @SQ SN:PGA_scaffold46231__1_contigs__length_12904 LN:12904 skipping SAM header line: @SQ SN:PGA_scaffold46232__1_contigs__length_12902 LN:12902 skipping SAM header line: @SQ SN:PGA_scaffold46233__1_contigs__length_18100 LN:18100 skipping SAM header line: @SQ SN:PGA_scaffold46234__1_contigs__length_15864 LN:15864 skipping SAM header line: @SQ SN:PGA_scaffold46235__1_contigs__length_19217 LN:19217 skipping SAM header line: @SQ SN:PGA_scaffold46236__1_contigs__length_17911 LN:17911 skipping SAM header line: @SQ SN:PGA_scaffold46237__1_contigs__length_13624 LN:13624 skipping SAM header line: @SQ SN:PGA_scaffold46238__1_contigs__length_11727 LN:11727 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold46457__1_contigs__length_11002 LN:11002 skipping SAM header line: @SQ SN:PGA_scaffold46471__1_contigs__length_10420 LN:10420 skipping SAM header line: @SQ SN:PGA_scaffold46478__1_contigs__length_10318 LN:10318 skipping SAM header line: @SQ SN:PGA_scaffold46481__1_contigs__length_11496 LN:11496 skipping SAM header line: @SQ SN:PGA_scaffold46503__1_contigs__length_11791 LN:11791 skipping SAM header line: @SQ SN:PGA_scaffold46506__1_contigs__length_10083 LN:10083 skipping SAM header line: @SQ SN:PGA_scaffold46514__1_contigs__length_29144 LN:29144 skipping SAM header line: @SQ SN:PGA_scaffold46515__1_contigs__length_20827 LN:20827 skipping SAM header line: @SQ SN:PGA_scaffold46516__1_contigs__length_19242 LN:19242 skipping SAM header line: @SQ SN:PGA_scaffold46518__1_contigs__length_28451 LN:28451 skipping SAM header line: @SQ SN:PGA_scaffold46519__1_contigs__length_15170 LN:15170 skipping SAM header line: @SQ SN:PGA_scaffold46520__1_contigs__length_20206 LN:20206 skipping SAM header line: @SQ SN:PGA_scaffold46533__1_contigs__length_11798 LN:11798 skipping SAM header line: @SQ SN:PGA_scaffold46536__1_contigs__length_10870 LN:10870 skipping SAM header line: @SQ SN:PGA_scaffold46545__1_contigs__length_15757 LN:15757 skipping SAM header line: @SQ SN:PGA_scaffold46548__1_contigs__length_25958 LN:25958 skipping SAM header line: @SQ SN:PGA_scaffold46550__1_contigs__length_15896 LN:15896 skipping SAM header line: @SQ SN:PGA_scaffold46551__1_contigs__length_13641 LN:13641 skipping SAM header line: @SQ SN:PGA_scaffold46552__1_contigs__length_10021 LN:10021 skipping SAM header line: @SQ SN:PGA_scaffold46553__1_contigs__length_14196 LN:14196 skipping SAM header line: @SQ SN:PGA_scaffold46554__1_contigs__length_13897 LN:13897 skipping SAM header line: @SQ SN:PGA_scaffold46556__1_contigs__length_14756 LN:14756 skipping SAM header line: @SQ SN:PGA_scaffold46561__1_contigs__length_29571 LN:29571 skipping SAM header line: @SQ SN:PGA_scaffold46564__1_contigs__length_15646 LN:15646 skipping SAM header line: @SQ SN:PGA_scaffold46568__1_contigs__length_13658 LN:13658 skipping SAM header line: @SQ SN:PGA_scaffold46573__1_contigs__length_16691 LN:16691 skipping SAM header line: @SQ SN:PGA_scaffold46576__1_contigs__length_15806 LN:15806 skipping SAM header line: @SQ SN:PGA_scaffold46577__1_contigs__length_10239 LN:10239 skipping SAM header line: @SQ SN:PGA_scaffold46624__1_contigs__length_12752 LN:12752 skipping SAM header line: @SQ SN:PGA_scaffold46650__1_contigs__length_12638 LN:12638 skipping SAM header line: @SQ SN:PGA_scaffold46672__1_contigs__length_22071 LN:22071 skipping SAM header line: @SQ SN:PGA_scaffold46692__1_contigs__length_10383 LN:10383 skipping SAM header line: @SQ SN:PGA_scaffold46702__1_contigs__length_10941 LN:10941 skipping SAM header line: @SQ SN:PGA_scaffold46715__1_contigs__length_15061 LN:15061 skipping SAM header line: @SQ SN:PGA_scaffold46721__1_contigs__length_10019 LN:10019 skipping SAM header line: @SQ SN:PGA_scaffold46729__1_contigs__length_14319 LN:14319 skipping SAM header line: @SQ SN:PGA_scaffold46747__1_contigs__length_23988 LN:23988 skipping SAM header line: @SQ SN:PGA_scaffold46772__1_contigs__length_17568 LN:17568 skipping SAM header line: @SQ SN:PGA_scaffold46784__1_contigs__length_20176 LN:20176 skipping SAM header line: @SQ SN:PGA_scaffold46785__1_contigs__length_10744 LN:10744 skipping SAM header line: @SQ SN:PGA_scaffold46786__1_contigs__length_21008 LN:21008 skipping SAM header line: @SQ SN:PGA_scaffold46817__1_contigs__length_15010 LN:15010 skipping SAM header line: @SQ SN:PGA_scaffold46824__1_contigs__length_18844 LN:18844 skipping SAM header line: @SQ SN:PGA_scaffold46847__1_contigs__length_10801 LN:10801 skipping SAM header line: @SQ SN:PGA_scaffold46899__1_contigs__length_11228 LN:11228 skipping SAM header line: @SQ SN:PGA_scaffold46901__1_contigs__length_13846 LN:13846 skipping SAM header line: @SQ SN:PGA_scaffold46906__1_contigs__length_19401 LN:19401 skipping SAM header line: @SQ SN:PGA_scaffold46909__1_contigs__length_14666 LN:14666 skipping SAM header line: @SQ SN:PGA_scaffold46916__1_contigs__length_36995 LN:36995 skipping SAM header line: @SQ SN:PGA_scaffold46921__1_contigs__length_13567 LN:13567 skipping SAM header line: @SQ SN:PGA_scaffold46924__1_contigs__length_41954 LN:41954 skipping SAM header line: @SQ SN:PGA_scaffold46932__1_contigs__length_13080 LN:13080 skipping SAM header line: @SQ SN:PGA_scaffold46946__1_contigs__length_11307 LN:11307 skipping SAM header line: @SQ SN:PGA_scaffold46951__1_contigs__length_14023 LN:14023 skipping SAM header line: @SQ SN:PGA_scaffold46981__1_contigs__length_11502 LN:11502 skipping SAM header line: @SQ SN:PGA_scaffold47013__1_contigs__length_10837 LN:10837 skipping SAM header line: @SQ SN:PGA_scaffold47080__1_contigs__length_29470 LN:29470 skipping SAM header line: @SQ SN:PGA_scaffold47083__1_contigs__length_13198 LN:13198 skipping SAM header line: @SQ SN:PGA_scaffold47106__1_contigs__length_11514 LN:11514 skipping SAM header line: @SQ SN:PGA_scaffold47120__1_contigs__length_10153 LN:10153 skipping SAM header line: @SQ SN:PGA_scaffold47129__1_contigs__length_23801 LN:23801 skipping SAM header line: @SQ SN:PGA_scaffold47169__1_contigs__length_13624 LN:13624 skipping SAM header line: @SQ SN:PGA_scaffold47195__1_contigs__length_10447 LN:10447 skipping SAM header line: @SQ SN:PGA_scaffold47268__1_contigs__length_13373 LN:13373 skipping SAM header line: @SQ SN:PGA_scaffold47270__1_contigs__length_11496 LN:11496 skipping SAM header line: @SQ SN:PGA_scaffold47274__1_contigs__length_21137 LN:21137 skipping SAM header line: @SQ SN:PGA_scaffold47300__1_contigs__length_10684 LN:10684 skipping SAM header line: @SQ SN:PGA_scaffold47303__1_contigs__length_25089 LN:25089 skipping SAM header line: @SQ SN:PGA_scaffold47308__1_contigs__length_14483 LN:14483 skipping SAM header line: @SQ SN:PGA_scaffold47316__1_contigs__length_10379 LN:10379 skipping SAM header line: @SQ SN:PGA_scaffold47363__1_contigs__length_11717 LN:11717 skipping SAM header line: @SQ SN:PGA_scaffold47365__1_contigs__length_13149 LN:13149 skipping SAM header line: @SQ SN:PGA_scaffold47460__1_contigs__length_23330 LN:23330 skipping SAM header line: @SQ SN:PGA_scaffold47540__1_contigs__length_11275 LN:11275 skipping SAM header line: @SQ SN:PGA_scaffold47569__1_contigs__length_13113 LN:13113 skipping SAM header line: @SQ SN:PGA_scaffold47643__1_contigs__length_11335 LN:11335 skipping SAM header line: @SQ SN:PGA_scaffold47647__1_contigs__length_13171 LN:13171 skipping SAM header line: @SQ SN:PGA_scaffold47655__1_contigs__length_19281 LN:19281 skipping SAM header line: @SQ SN:PGA_scaffold47772__1_contigs__length_19487 LN:19487 skipping SAM header line: @SQ SN:PGA_scaffold47803__1_contigs__length_14433 LN:14433 skipping SAM header line: @SQ SN:PGA_scaffold47877__1_contigs__length_16717 LN:16717 skipping SAM header line: @SQ SN:PGA_scaffold47943__1_contigs__length_15420 LN:15420 skipping SAM header line: @SQ SN:PGA_scaffold47955__1_contigs__length_21082 LN:21082 skipping SAM header line: @SQ SN:PGA_scaffold47993__1_contigs__length_11188 LN:11188 skipping SAM header line: @SQ SN:PGA_scaffold48049__1_contigs__length_10520 LN:10520 skipping SAM header line: @SQ SN:PGA_scaffold48069__1_contigs__length_11155 LN:11155 skipping SAM header line: @SQ SN:PGA_scaffold48104__1_contigs__length_10863 LN:10863 skipping SAM header line: @SQ SN:PGA_scaffold48109__1_contigs__length_10955 LN:10955 skipping SAM header line: @SQ SN:PGA_scaffold48118__1_contigs__length_30764 LN:30764 skipping SAM header line: @SQ SN:PGA_scaffold48123__1_contigs__length_16694 LN:16694 skipping SAM header line: @SQ SN:PGA_scaffold48132__1_contigs__length_13476 LN:13476 skipping SAM header line: @SQ SN:PGA_scaffold48141__1_contigs__length_24674 LN:24674 skipping SAM header line: @SQ SN:PGA_scaffold48162__1_contigs__length_13267 LN:13267 skipping SAM header line: @SQ SN:PGA_scaffold48206__1_contigs__length_12592 LN:12592 skipping SAM header line: @SQ SN:PGA_scaffold48235__1_contigs__length_10433 LN:10433 skipping SAM header line: @SQ SN:PGA_scaffold48236__1_contigs__length_11905 LN:11905 skipping SAM header line: @SQ SN:PGA_scaffold48239__1_contigs__length_19039 LN:19039 skipping SAM header line: @SQ SN:PGA_scaffold48250__1_contigs__length_17084 LN:17084 skipping SAM header line: @SQ SN:PGA_scaffold48279__1_contigs__length_16998 LN:16998 skipping SAM header line: @SQ SN:PGA_scaffold48280__1_contigs__length_24684 LN:24684 skipping SAM header line: @SQ SN:PGA_scaffold48293__1_contigs__length_11603 LN:11603 skipping SAM header line: @SQ SN:PGA_scaffold48313__1_contigs__length_12292 LN:12292 skipping SAM header line: @SQ SN:PGA_scaffold48318__1_contigs__length_10270 LN:10270 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold48491__1_contigs__length_44805 LN:44805 skipping SAM header line: @SQ SN:PGA_scaffold48498__1_contigs__length_32874 LN:32874 skipping SAM header line: @SQ SN:PGA_scaffold48501__1_contigs__length_13457 LN:13457 skipping SAM header line: @SQ SN:PGA_scaffold48505__1_contigs__length_10537 LN:10537 skipping SAM header line: @SQ SN:PGA_scaffold48534__1_contigs__length_10676 LN:10676 skipping SAM header line: @SQ SN:PGA_scaffold48535__1_contigs__length_11229 LN:11229 skipping SAM header line: @SQ SN:PGA_scaffold48543__1_contigs__length_20149 LN:20149 skipping SAM header line: @SQ SN:PGA_scaffold48554__1_contigs__length_10225 LN:10225 skipping SAM header line: @SQ SN:PGA_scaffold48562__1_contigs__length_15839 LN:15839 skipping SAM header line: @SQ SN:PGA_scaffold48564__1_contigs__length_22614 LN:22614 skipping SAM header line: @SQ SN:PGA_scaffold48624__1_contigs__length_14083 LN:14083 skipping SAM header line: @SQ SN:PGA_scaffold48627__1_contigs__length_30570 LN:30570 skipping SAM header line: @SQ SN:PGA_scaffold48637__1_contigs__length_13369 LN:13369 skipping SAM header line: @SQ SN:PGA_scaffold48653__1_contigs__length_12120 LN:12120 skipping SAM header line: @SQ SN:PGA_scaffold48660__1_contigs__length_28732 LN:28732 skipping SAM header line: @SQ SN:PGA_scaffold48669__1_contigs__length_19903 LN:19903 skipping SAM header line: @SQ SN:PGA_scaffold48675__1_contigs__length_16346 LN:16346 skipping SAM header line: @SQ SN:PGA_scaffold48685__1_contigs__length_11556 LN:11556 skipping SAM header line: @SQ SN:PGA_scaffold48691__1_contigs__length_18673 LN:18673 skipping SAM header line: @SQ SN:PGA_scaffold48700__1_contigs__length_41489 LN:41489 skipping SAM header line: @SQ SN:PGA_scaffold48705__1_contigs__length_11065 LN:11065 skipping SAM header line: @SQ SN:PGA_scaffold48717__1_contigs__length_14294 LN:14294 skipping SAM header line: @SQ SN:PGA_scaffold48722__1_contigs__length_15548 LN:15548 skipping SAM header line: @SQ SN:PGA_scaffold48723__1_contigs__length_10792 LN:10792 skipping SAM header line: @SQ SN:PGA_scaffold48732__1_contigs__length_10281 LN:10281 skipping SAM header line: @SQ SN:PGA_scaffold48775__1_contigs__length_13370 LN:13370 skipping SAM header line: @SQ SN:PGA_scaffold48788__1_contigs__length_20278 LN:20278 skipping SAM header line: @SQ SN:PGA_scaffold48793__1_contigs__length_10915 LN:10915 skipping SAM header line: @SQ SN:PGA_scaffold48813__1_contigs__length_11634 LN:11634 skipping SAM header line: @SQ SN:PGA_scaffold48829__1_contigs__length_16567 LN:16567 skipping SAM header line: @SQ SN:PGA_scaffold48864__1_contigs__length_16258 LN:16258 skipping SAM header line: @SQ SN:PGA_scaffold48872__1_contigs__length_12948 LN:12948 skipping SAM header line: @SQ SN:PGA_scaffold48877__1_contigs__length_10823 LN:10823 skipping SAM header line: @SQ SN:PGA_scaffold48890__1_contigs__length_36820 LN:36820 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold48999__1_contigs__length_11128 LN:11128 skipping SAM header line: @SQ SN:PGA_scaffold49028__1_contigs__length_11670 LN:11670 skipping SAM header line: @SQ SN:PGA_scaffold49035__1_contigs__length_15036 LN:15036 skipping SAM header line: @SQ SN:PGA_scaffold49040__1_contigs__length_26066 LN:26066 skipping SAM header line: @SQ SN:PGA_scaffold49042__1_contigs__length_13588 LN:13588 skipping SAM header line: @SQ SN:PGA_scaffold49049__1_contigs__length_44862 LN:44862 skipping SAM header line: @SQ SN:PGA_scaffold49052__1_contigs__length_30066 LN:30066 skipping SAM header line: @SQ SN:PGA_scaffold49054__1_contigs__length_10605 LN:10605 skipping SAM header line: @SQ SN:PGA_scaffold49063__1_contigs__length_22723 LN:22723 skipping SAM header line: @SQ SN:PGA_scaffold49065__1_contigs__length_13163 LN:13163 skipping SAM header line: @SQ SN:PGA_scaffold49092__1_contigs__length_17678 LN:17678 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold49165__1_contigs__length_22310 LN:22310 skipping SAM header line: @SQ SN:PGA_scaffold49167__1_contigs__length_20560 LN:20560 skipping SAM header line: @SQ SN:PGA_scaffold49174__1_contigs__length_12969 LN:12969 skipping SAM header line: @SQ SN:PGA_scaffold49175__1_contigs__length_28691 LN:28691 skipping SAM header line: @SQ SN:PGA_scaffold49186__1_contigs__length_11971 LN:11971 skipping SAM header line: @SQ SN:PGA_scaffold49191__1_contigs__length_10824 LN:10824 skipping SAM header line: @SQ SN:PGA_scaffold49194__1_contigs__length_29168 LN:29168 skipping SAM header line: @SQ SN:PGA_scaffold49200__1_contigs__length_15006 LN:15006 skipping SAM header line: @SQ SN:PGA_scaffold49209__1_contigs__length_10515 LN:10515 skipping SAM header line: @SQ SN:PGA_scaffold49210__1_contigs__length_13683 LN:13683 skipping SAM header line: @SQ SN:PGA_scaffold49211__1_contigs__length_11356 LN:11356 skipping SAM header line: @SQ SN:PGA_scaffold49221__1_contigs__length_14192 LN:14192 skipping SAM header line: @SQ SN:PGA_scaffold49224__1_contigs__length_19858 LN:19858 skipping SAM header line: @SQ SN:PGA_scaffold49226__1_contigs__length_27352 LN:27352 skipping SAM header line: @SQ SN:PGA_scaffold49229__1_contigs__length_10015 LN:10015 skipping SAM header line: @SQ SN:PGA_scaffold49232__1_contigs__length_11940 LN:11940 skipping SAM header line: @SQ SN:PGA_scaffold49234__1_contigs__length_12806 LN:12806 skipping SAM header line: @SQ SN:PGA_scaffold49236__1_contigs__length_17279 LN:17279 skipping SAM header line: @SQ SN:PGA_scaffold49239__1_contigs__length_15724 LN:15724 skipping SAM header line: @SQ SN:PGA_scaffold49240__1_contigs__length_15576 LN:15576 skipping SAM header line: @SQ SN:PGA_scaffold49253__1_contigs__length_11797 LN:11797 skipping SAM header line: @SQ SN:PGA_scaffold49255__1_contigs__length_12863 LN:12863 skipping SAM header line: @SQ SN:PGA_scaffold49256__1_contigs__length_10395 LN:10395 skipping SAM header line: @SQ SN:PGA_scaffold49257__1_contigs__length_26558 LN:26558 skipping SAM header line: @SQ SN:PGA_scaffold49259__1_contigs__length_12333 LN:12333 skipping SAM header line: @SQ SN:PGA_scaffold49266__1_contigs__length_11576 LN:11576 skipping SAM header line: @SQ SN:PGA_scaffold49268__1_contigs__length_12961 LN:12961 skipping SAM header line: @SQ SN:PGA_scaffold49269__1_contigs__length_58629 LN:58629 skipping SAM header line: @SQ SN:PGA_scaffold49272__1_contigs__length_48462 LN:48462 skipping SAM header line: @SQ SN:PGA_scaffold49286__1_contigs__length_32480 LN:32480 skipping SAM header line: @SQ SN:PGA_scaffold49289__1_contigs__length_10153 LN:10153 skipping SAM header line: @SQ SN:PGA_scaffold49291__1_contigs__length_14827 LN:14827 skipping SAM header line: @SQ SN:PGA_scaffold49292__1_contigs__length_14774 LN:14774 skipping SAM header line: @SQ SN:PGA_scaffold49294__1_contigs__length_18010 LN:18010 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold49326__1_contigs__length_14299 LN:14299 skipping SAM header line: @SQ SN:PGA_scaffold49327__1_contigs__length_31386 LN:31386 skipping SAM header line: @SQ SN:PGA_scaffold49330__1_contigs__length_23437 LN:23437 skipping SAM header line: @SQ SN:PGA_scaffold49332__1_contigs__length_16295 LN:16295 skipping SAM header line: @SQ SN:PGA_scaffold49336__1_contigs__length_27472 LN:27472 skipping SAM header line: @SQ SN:PGA_scaffold49337__1_contigs__length_44952 LN:44952 skipping SAM header line: @SQ SN:PGA_scaffold49340__1_contigs__length_11653 LN:11653 skipping SAM header line: @SQ SN:PGA_scaffold49343__1_contigs__length_14077 LN:14077 skipping SAM header line: @SQ SN:PGA_scaffold49344__1_contigs__length_12943 LN:12943 skipping SAM header line: @SQ SN:PGA_scaffold49345__1_contigs__length_12605 LN:12605 skipping SAM header line: @SQ SN:PGA_scaffold49352__1_contigs__length_23523 LN:23523 skipping SAM header line: @SQ SN:PGA_scaffold49353__1_contigs__length_13813 LN:13813 skipping SAM header line: @SQ SN:PGA_scaffold49356__1_contigs__length_13075 LN:13075 skipping SAM header line: @SQ SN:PGA_scaffold49369__1_contigs__length_25275 LN:25275 skipping SAM header line: @SQ SN:PGA_scaffold49375__1_contigs__length_11795 LN:11795 skipping SAM header line: @SQ SN:PGA_scaffold49379__1_contigs__length_17801 LN:17801 skipping SAM header line: @SQ SN:PGA_scaffold49382__1_contigs__length_25798 LN:25798 skipping SAM header line: @SQ SN:PGA_scaffold49384__1_contigs__length_10125 LN:10125 skipping SAM header line: @SQ SN:PGA_scaffold49385__1_contigs__length_14680 LN:14680 skipping SAM header line: @SQ SN:PGA_scaffold49388__1_contigs__length_15824 LN:15824 skipping SAM header line: @SQ SN:PGA_scaffold49391__1_contigs__length_12684 LN:12684 skipping SAM header line: @SQ SN:PGA_scaffold49402__1_contigs__length_32985 LN:32985 skipping SAM header line: @SQ SN:PGA_scaffold49404__1_contigs__length_11959 LN:11959 skipping SAM header line: @SQ SN:PGA_scaffold49405__1_contigs__length_18689 LN:18689 skipping SAM header line: @SQ SN:PGA_scaffold49407__1_contigs__length_16192 LN:16192 skipping SAM header line: @SQ SN:PGA_scaffold49409__1_contigs__length_10695 LN:10695 skipping SAM header line: @SQ SN:PGA_scaffold49422__1_contigs__length_11339 LN:11339 skipping SAM header line: @SQ SN:PGA_scaffold49425__1_contigs__length_16630 LN:16630 skipping SAM header line: @SQ SN:PGA_scaffold49429__1_contigs__length_13871 LN:13871 skipping SAM header line: @SQ SN:PGA_scaffold49433__1_contigs__length_36204 LN:36204 skipping SAM header line: @SQ SN:PGA_scaffold49445__1_contigs__length_14106 LN:14106 skipping SAM header line: @SQ SN:PGA_scaffold49448__1_contigs__length_40249 LN:40249 skipping SAM header line: @SQ SN:PGA_scaffold49449__1_contigs__length_18050 LN:18050 skipping SAM header line: @SQ SN:PGA_scaffold49468__1_contigs__length_11238 LN:11238 skipping SAM header line: @SQ SN:PGA_scaffold49470__1_contigs__length_21592 LN:21592 skipping SAM header line: @SQ SN:PGA_scaffold49475__1_contigs__length_13623 LN:13623 skipping SAM header line: @SQ SN:PGA_scaffold49477__1_contigs__length_16313 LN:16313 skipping SAM header line: @SQ SN:PGA_scaffold49484__1_contigs__length_17047 LN:17047 skipping SAM header line: @SQ SN:PGA_scaffold49503__1_contigs__length_15132 LN:15132 skipping SAM header line: @SQ SN:PGA_scaffold49529__1_contigs__length_16573 LN:16573 skipping SAM header line: @SQ SN:PGA_scaffold49532__1_contigs__length_12119 LN:12119 skipping SAM header line: @SQ SN:PGA_scaffold49544__1_contigs__length_25468 LN:25468 skipping SAM header line: @SQ SN:PGA_scaffold49545__1_contigs__length_22800 LN:22800 skipping SAM header line: @SQ SN:PGA_scaffold49560__1_contigs__length_13629 LN:13629 skipping SAM header line: @SQ SN:PGA_scaffold49571__1_contigs__length_13018 LN:13018 skipping SAM header line: @SQ SN:PGA_scaffold49572__1_contigs__length_17506 LN:17506 skipping SAM header line: @SQ SN:PGA_scaffold49574__1_contigs__length_11476 LN:11476 skipping SAM header line: @SQ SN:PGA_scaffold49577__1_contigs__length_17413 LN:17413 skipping SAM header line: @SQ SN:PGA_scaffold49582__1_contigs__length_12580 LN:12580 skipping SAM header line: @SQ SN:PGA_scaffold49594__1_contigs__length_10147 LN:10147 skipping SAM header line: @SQ SN:PGA_scaffold49597__1_contigs__length_21424 LN:21424 skipping SAM header line: @SQ SN:PGA_scaffold49600__1_contigs__length_30811 LN:30811 skipping SAM header line: @SQ SN:PGA_scaffold49602__1_contigs__length_12859 LN:12859 skipping SAM header line: @SQ SN:PGA_scaffold49604__1_contigs__length_19647 LN:19647 skipping SAM header line: @SQ SN:PGA_scaffold49605__1_contigs__length_16703 LN:16703 skipping SAM header line: @SQ SN:PGA_scaffold49606__1_contigs__length_19010 LN:19010 skipping SAM header line: @SQ SN:PGA_scaffold49607__1_contigs__length_13388 LN:13388 skipping SAM header line: @SQ SN:PGA_scaffold49608__1_contigs__length_10166 LN:10166 skipping SAM header line: @SQ SN:PGA_scaffold49609__1_contigs__length_30653 LN:30653 skipping SAM header line: @SQ SN:PGA_scaffold49611__1_contigs__length_20718 LN:20718 skipping SAM header line: @SQ SN:PGA_scaffold49612__1_contigs__length_15043 LN:15043 skipping SAM header line: @SQ SN:PGA_scaffold49614__1_contigs__length_16089 LN:16089 skipping SAM header line: @SQ SN:PGA_scaffold49617__1_contigs__length_24466 LN:24466 skipping SAM header line: @SQ SN:PGA_scaffold49619__1_contigs__length_18033 LN:18033 skipping SAM header line: @SQ SN:PGA_scaffold49620__1_contigs__length_21791 LN:21791 skipping SAM header line: @SQ SN:PGA_scaffold49621__1_contigs__length_16900 LN:16900 skipping SAM header line: @SQ SN:PGA_scaffold49622__1_contigs__length_34505 LN:34505 skipping SAM header line: @SQ SN:PGA_scaffold49623__1_contigs__length_25293 LN:25293 skipping SAM header line: @SQ SN:PGA_scaffold49625__1_contigs__length_20194 LN:20194 skipping SAM header line: @SQ SN:PGA_scaffold49626__1_contigs__length_13304 LN:13304 skipping SAM header line: @SQ SN:PGA_scaffold49627__1_contigs__length_11690 LN:11690 skipping SAM header line: @SQ SN:PGA_scaffold49628__1_contigs__length_12756 LN:12756 skipping SAM header line: @SQ SN:PGA_scaffold49629__1_contigs__length_14363 LN:14363 skipping SAM header line: @SQ SN:PGA_scaffold49630__1_contigs__length_13586 LN:13586 skipping SAM header line: @SQ SN:PGA_scaffold49675__1_contigs__length_11298 LN:11298 skipping SAM header line: @SQ SN:PGA_scaffold49715__1_contigs__length_10100 LN:10100 skipping SAM header line: @SQ SN:PGA_scaffold49726__1_contigs__length_15636 LN:15636 skipping SAM header line: @SQ SN:PGA_scaffold49846__1_contigs__length_10561 LN:10561 skipping SAM header line: @SQ SN:PGA_scaffold49889__1_contigs__length_10599 LN:10599 skipping SAM header line: @SQ SN:PGA_scaffold49901__1_contigs__length_11073 LN:11073 skipping SAM header line: @SQ SN:PGA_scaffold50029__1_contigs__length_10771 LN:10771 skipping SAM header line: @SQ SN:PGA_scaffold50066__1_contigs__length_10012 LN:10012 skipping SAM header line: @SQ SN:PGA_scaffold50112__1_contigs__length_10411 LN:10411 skipping SAM header line: @SQ SN:PGA_scaffold50128__1_contigs__length_10295 LN:10295 skipping SAM header line: @SQ SN:PGA_scaffold50133__1_contigs__length_10632 LN:10632 skipping SAM header line: @SQ SN:PGA_scaffold50143__1_contigs__length_11444 LN:11444 skipping SAM header line: @SQ SN:PGA_scaffold50146__1_contigs__length_12003 LN:12003 skipping SAM header line: @SQ SN:PGA_scaffold50181__1_contigs__length_11948 LN:11948 skipping SAM header line: @SQ SN:PGA_scaffold50186__1_contigs__length_11682 LN:11682 skipping SAM header line: @SQ SN:PGA_scaffold50189__1_contigs__length_11705 LN:11705 skipping SAM header line: @SQ SN:PGA_scaffold50194__1_contigs__length_11261 LN:11261 skipping SAM header line: @SQ SN:PGA_scaffold50210__1_contigs__length_12196 LN:12196 skipping SAM header line: @SQ SN:PGA_scaffold50227__1_contigs__length_11634 LN:11634 skipping SAM header line: @SQ SN:PGA_scaffold50241__1_contigs__length_10132 LN:10132 skipping SAM header line: @SQ SN:PGA_scaffold50261__1_contigs__length_22212 LN:22212 skipping SAM header line: @SQ SN:PGA_scaffold50262__1_contigs__length_28517 LN:28517 skipping SAM header line: @SQ SN:PGA_scaffold50268__1_contigs__length_48869 LN:48869 skipping SAM header line: @SQ SN:PGA_scaffold50269__1_contigs__length_24490 LN:24490 skipping SAM header line: @SQ SN:PGA_scaffold50271__1_contigs__length_17994 LN:17994 skipping SAM header line: @SQ SN:PGA_scaffold50281__1_contigs__length_21006 LN:21006 skipping SAM header line: @SQ SN:PGA_scaffold50283__1_contigs__length_15451 LN:15451 skipping SAM header line: @SQ SN:PGA_scaffold50292__1_contigs__length_13547 LN:13547 skipping SAM header line: @SQ SN:PGA_scaffold50296__1_contigs__length_19149 LN:19149 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold50355__1_contigs__length_13230 LN:13230 skipping SAM header line: @SQ SN:PGA_scaffold50357__1_contigs__length_13354 LN:13354 skipping SAM header line: @SQ SN:PGA_scaffold50358__1_contigs__length_12099 LN:12099 skipping SAM header line: @SQ SN:PGA_scaffold50359__1_contigs__length_13686 LN:13686 skipping SAM header line: @SQ SN:PGA_scaffold50361__1_contigs__length_12083 LN:12083 skipping SAM header line: @SQ SN:PGA_scaffold50362__1_contigs__length_17907 LN:17907 skipping SAM header line: @SQ SN:PGA_scaffold50365__1_contigs__length_11162 LN:11162 skipping SAM header line: @SQ SN:PGA_scaffold50399__1_contigs__length_10139 LN:10139 skipping SAM header line: @SQ SN:PGA_scaffold50406__1_contigs__length_18588 LN:18588 skipping SAM header line: @SQ SN:PGA_scaffold50408__1_contigs__length_19146 LN:19146 skipping SAM header line: @SQ SN:PGA_scaffold50414__1_contigs__length_43015 LN:43015 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold50468__1_contigs__length_13060 LN:13060 skipping SAM header line: @SQ SN:PGA_scaffold50469__1_contigs__length_10848 LN:10848 skipping SAM header line: @SQ SN:PGA_scaffold50470__1_contigs__length_15679 LN:15679 skipping SAM header line: @SQ SN:PGA_scaffold50483__1_contigs__length_25583 LN:25583 skipping SAM header line: @SQ SN:PGA_scaffold50491__1_contigs__length_12454 LN:12454 skipping SAM header line: @SQ SN:PGA_scaffold50494__1_contigs__length_11821 LN:11821 skipping SAM header line: @SQ SN:PGA_scaffold50498__1_contigs__length_13160 LN:13160 skipping SAM header line: @SQ SN:PGA_scaffold50511__1_contigs__length_10197 LN:10197 skipping SAM header line: @SQ SN:PGA_scaffold50519__1_contigs__length_15618 LN:15618 skipping SAM header line: @SQ SN:PGA_scaffold50529__1_contigs__length_10059 LN:10059 skipping SAM header line: @SQ SN:PGA_scaffold50532__1_contigs__length_11031 LN:11031 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold50630__1_contigs__length_17074 LN:17074 skipping SAM header line: @SQ SN:PGA_scaffold50633__1_contigs__length_16466 LN:16466 skipping SAM header line: @SQ SN:PGA_scaffold50636__1_contigs__length_14395 LN:14395 skipping SAM header line: @SQ SN:PGA_scaffold50658__1_contigs__length_23340 LN:23340 skipping SAM header line: @SQ SN:PGA_scaffold50664__1_contigs__length_10217 LN:10217 skipping SAM header line: @SQ SN:PGA_scaffold50677__1_contigs__length_11180 LN:11180 skipping SAM header line: @SQ SN:PGA_scaffold50678__1_contigs__length_10826 LN:10826 skipping SAM header line: @SQ SN:PGA_scaffold50680__1_contigs__length_21674 LN:21674 skipping SAM header line: @SQ SN:PGA_scaffold50693__1_contigs__length_12761 LN:12761 skipping SAM header line: @SQ SN:PGA_scaffold50696__1_contigs__length_18934 LN:18934 skipping SAM header line: @SQ SN:PGA_scaffold50702__1_contigs__length_16367 LN:16367 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold50839__1_contigs__length_13550 LN:13550 skipping SAM header line: @SQ SN:PGA_scaffold50855__1_contigs__length_17396 LN:17396 skipping SAM header line: @SQ SN:PGA_scaffold50857__1_contigs__length_15440 LN:15440 skipping SAM header line: @SQ SN:PGA_scaffold50862__1_contigs__length_10894 LN:10894 skipping SAM header line: @SQ SN:PGA_scaffold50881__1_contigs__length_11214 LN:11214 skipping SAM header line: @SQ SN:PGA_scaffold50884__1_contigs__length_14439 LN:14439 skipping SAM header line: @SQ SN:PGA_scaffold50887__1_contigs__length_20418 LN:20418 skipping SAM header line: @SQ SN:PGA_scaffold50893__1_contigs__length_17684 LN:17684 skipping SAM header line: @SQ SN:PGA_scaffold50899__1_contigs__length_10258 LN:10258 skipping SAM header line: @SQ SN:PGA_scaffold50903__1_contigs__length_12444 LN:12444 skipping SAM header line: @SQ SN:PGA_scaffold50910__1_contigs__length_10139 LN:10139 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold51207__1_contigs__length_11585 LN:11585 skipping SAM header line: @SQ SN:PGA_scaffold51214__1_contigs__length_11930 LN:11930 skipping SAM header line: @SQ SN:PGA_scaffold51239__1_contigs__length_28000 LN:28000 skipping SAM header line: @SQ SN:PGA_scaffold51251__1_contigs__length_17902 LN:17902 skipping SAM header line: @SQ SN:PGA_scaffold51297__1_contigs__length_15202 LN:15202 skipping SAM header line: @SQ SN:PGA_scaffold51302__1_contigs__length_11436 LN:11436 skipping SAM header line: @SQ SN:PGA_scaffold51330__1_contigs__length_11389 LN:11389 skipping SAM header line: @SQ SN:PGA_scaffold51344__1_contigs__length_17940 LN:17940 skipping SAM header line: @SQ SN:PGA_scaffold51353__1_contigs__length_12153 LN:12153 skipping SAM header line: @SQ SN:PGA_scaffold51355__1_contigs__length_10824 LN:10824 skipping SAM header line: @SQ SN:PGA_scaffold51375__1_contigs__length_10725 LN:10725 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold51527__1_contigs__length_12947 LN:12947 skipping SAM header line: @SQ SN:PGA_scaffold51529__1_contigs__length_14797 LN:14797 skipping SAM header line: @SQ SN:PGA_scaffold51536__1_contigs__length_21274 LN:21274 skipping SAM header line: @SQ SN:PGA_scaffold51544__1_contigs__length_32260 LN:32260 skipping SAM header line: @SQ SN:PGA_scaffold51545__1_contigs__length_14880 LN:14880 skipping SAM header line: @SQ SN:PGA_scaffold51551__1_contigs__length_17471 LN:17471 skipping SAM header line: @SQ SN:PGA_scaffold51553__1_contigs__length_15277 LN:15277 skipping SAM header line: @SQ SN:PGA_scaffold51555__1_contigs__length_12794 LN:12794 skipping SAM header line: @SQ SN:PGA_scaffold51557__1_contigs__length_12064 LN:12064 skipping SAM header line: @SQ SN:PGA_scaffold51573__1_contigs__length_14484 LN:14484 skipping SAM header line: @SQ SN:PGA_scaffold51609__1_contigs__length_11770 LN:11770 skipping SAM header line: @SQ SN:PGA_scaffold51613__1_contigs__length_15908 LN:15908 skipping SAM header line: @SQ SN:PGA_scaffold51626__1_contigs__length_14432 LN:14432 skipping SAM header line: @SQ SN:PGA_scaffold51633__1_contigs__length_14476 LN:14476 skipping SAM header line: @SQ SN:PGA_scaffold51635__1_contigs__length_11615 LN:11615 skipping SAM header line: @SQ SN:PGA_scaffold51643__1_contigs__length_19869 LN:19869 skipping SAM header line: @SQ SN:PGA_scaffold51648__1_contigs__length_13972 LN:13972 skipping SAM header line: @SQ SN:PGA_scaffold51651__1_contigs__length_10636 LN:10636 skipping SAM header line: @SQ SN:PGA_scaffold51659__1_contigs__length_25098 LN:25098 skipping SAM header line: @SQ SN:PGA_scaffold51664__1_contigs__length_10193 LN:10193 skipping SAM header line: @SQ SN:PGA_scaffold51671__1_contigs__length_12633 LN:12633 skipping SAM header line: @SQ SN:PGA_scaffold51675__1_contigs__length_11405 LN:11405 skipping SAM header line: @SQ SN:PGA_scaffold51680__1_contigs__length_18586 LN:18586 skipping SAM header line: @SQ SN:PGA_scaffold51682__1_contigs__length_11315 LN:11315 skipping SAM header line: @SQ SN:PGA_scaffold51684__1_contigs__length_32586 LN:32586 skipping SAM header line: @SQ SN:PGA_scaffold51686__1_contigs__length_16642 LN:16642 skipping SAM header line: @SQ SN:PGA_scaffold51693__1_contigs__length_14051 LN:14051 skipping SAM header line: @SQ SN:PGA_scaffold51694__1_contigs__length_13071 LN:13071 skipping SAM header line: @SQ SN:PGA_scaffold51695__1_contigs__length_11099 LN:11099 skipping SAM header line: @SQ SN:PGA_scaffold51704__1_contigs__length_13569 LN:13569 skipping SAM header line: @SQ SN:PGA_scaffold51712__1_contigs__length_22480 LN:22480 skipping SAM header line: @SQ SN:PGA_scaffold51713__1_contigs__length_14688 LN:14688 skipping SAM header line: @SQ SN:PGA_scaffold51724__1_contigs__length_13355 LN:13355 skipping SAM header line: @SQ SN:PGA_scaffold51730__1_contigs__length_17419 LN:17419 skipping SAM header line: @SQ SN:PGA_scaffold51753__1_contigs__length_11177 LN:11177 skipping SAM header line: @SQ SN:PGA_scaffold51765__1_contigs__length_23740 LN:23740 skipping SAM header line: @SQ SN:PGA_scaffold51767__1_contigs__length_11112 LN:11112 skipping SAM header line: @SQ SN:PGA_scaffold51773__1_contigs__length_15736 LN:15736 skipping SAM header line: @SQ SN:PGA_scaffold51777__1_contigs__length_26355 LN:26355 skipping SAM header line: @SQ SN:PGA_scaffold51782__1_contigs__length_22898 LN:22898 skipping SAM header line: @SQ SN:PGA_scaffold51784__1_contigs__length_28054 LN:28054 skipping SAM header line: @SQ SN:PGA_scaffold51785__1_contigs__length_18706 LN:18706 skipping SAM header line: @SQ SN:PGA_scaffold51794__1_contigs__length_23350 LN:23350 skipping SAM header line: @SQ SN:PGA_scaffold51800__1_contigs__length_21608 LN:21608 skipping SAM header line: @SQ SN:PGA_scaffold51801__1_contigs__length_25132 LN:25132 skipping SAM header line: @SQ SN:PGA_scaffold51808__1_contigs__length_15451 LN:15451 skipping SAM header line: @SQ SN:PGA_scaffold51812__1_contigs__length_11275 LN:11275 skipping SAM header line: @SQ SN:PGA_scaffold51819__1_contigs__length_11191 LN:11191 skipping SAM header line: @SQ SN:PGA_scaffold51822__1_contigs__length_14045 LN:14045 skipping SAM header line: @SQ SN:PGA_scaffold51827__1_contigs__length_44668 LN:44668 skipping SAM header line: @SQ SN:PGA_scaffold51836__1_contigs__length_13511 LN:13511 skipping SAM header line: @SQ SN:PGA_scaffold51838__1_contigs__length_17245 LN:17245 skipping SAM header line: @SQ SN:PGA_scaffold51860__1_contigs__length_10239 LN:10239 skipping SAM header line: @SQ SN:PGA_scaffold51868__1_contigs__length_14616 LN:14616 skipping SAM header line: @SQ SN:PGA_scaffold51871__1_contigs__length_15722 LN:15722 skipping SAM header line: @SQ SN:PGA_scaffold51877__1_contigs__length_14375 LN:14375 skipping SAM header line: @SQ SN:PGA_scaffold51878__1_contigs__length_21659 LN:21659 skipping SAM header line: @SQ SN:PGA_scaffold51885__1_contigs__length_11852 LN:11852 skipping SAM header line: @SQ SN:PGA_scaffold51902__1_contigs__length_16215 LN:16215 skipping SAM header line: @SQ SN:PGA_scaffold51905__1_contigs__length_15231 LN:15231 skipping SAM header line: @SQ SN:PGA_scaffold51908__1_contigs__length_16044 LN:16044 skipping SAM header line: @SQ SN:PGA_scaffold51913__1_contigs__length_13656 LN:13656 skipping SAM header line: @SQ SN:PGA_scaffold51923__1_contigs__length_17619 LN:17619 skipping SAM header line: @SQ SN:PGA_scaffold51925__1_contigs__length_33625 LN:33625 skipping SAM header line: @SQ SN:PGA_scaffold51928__1_contigs__length_20608 LN:20608 skipping SAM header line: @SQ SN:PGA_scaffold51938__1_contigs__length_12843 LN:12843 skipping SAM header line: @SQ SN:PGA_scaffold51944__1_contigs__length_15649 LN:15649 skipping SAM header line: @SQ SN:PGA_scaffold51947__1_contigs__length_16517 LN:16517 skipping SAM header line: @SQ SN:PGA_scaffold51948__1_contigs__length_21090 LN:21090 skipping SAM header line: @SQ SN:PGA_scaffold51952__1_contigs__length_18193 LN:18193 skipping SAM header line: @SQ SN:PGA_scaffold51977__1_contigs__length_11343 LN:11343 skipping SAM header line: @SQ SN:PGA_scaffold51978__1_contigs__length_15351 LN:15351 skipping SAM header line: @SQ SN:PGA_scaffold51979__1_contigs__length_17431 LN:17431 skipping SAM header line: @SQ SN:PGA_scaffold51994__1_contigs__length_13921 LN:13921 skipping SAM header line: @SQ SN:PGA_scaffold51999__1_contigs__length_15700 LN:15700 skipping SAM header line: @SQ SN:PGA_scaffold52002__1_contigs__length_14336 LN:14336 skipping SAM header line: @SQ SN:PGA_scaffold52011__1_contigs__length_12563 LN:12563 skipping SAM header line: @SQ SN:PGA_scaffold52030__1_contigs__length_16956 LN:16956 skipping SAM header line: @SQ SN:PGA_scaffold52047__1_contigs__length_52540 LN:52540 skipping SAM header line: @SQ SN:PGA_scaffold52049__1_contigs__length_14319 LN:14319 skipping SAM header line: @SQ SN:PGA_scaffold52050__1_contigs__length_46830 LN:46830 skipping SAM header line: @SQ SN:PGA_scaffold52063__1_contigs__length_28482 LN:28482 skipping SAM header line: @SQ SN:PGA_scaffold52082__1_contigs__length_11288 LN:11288 skipping SAM header line: @SQ SN:PGA_scaffold52106__1_contigs__length_20991 LN:20991 skipping SAM header line: @SQ SN:PGA_scaffold52108__1_contigs__length_20775 LN:20775 skipping SAM header line: @SQ SN:PGA_scaffold52113__1_contigs__length_31958 LN:31958 skipping SAM header line: @SQ SN:PGA_scaffold52117__1_contigs__length_13001 LN:13001 skipping SAM header line: @SQ SN:PGA_scaffold52121__1_contigs__length_11965 LN:11965 skipping SAM header line: @SQ SN:PGA_scaffold52123__1_contigs__length_15142 LN:15142 skipping SAM header line: @SQ SN:PGA_scaffold52125__1_contigs__length_10208 LN:10208 skipping SAM header line: @SQ SN:PGA_scaffold52128__1_contigs__length_39877 LN:39877 skipping SAM header line: @SQ SN:PGA_scaffold52133__1_contigs__length_17199 LN:17199 skipping SAM header line: @SQ SN:PGA_scaffold52136__1_contigs__length_15799 LN:15799 skipping SAM header line: @SQ SN:PGA_scaffold52138__1_contigs__length_18079 LN:18079 skipping SAM header line: @SQ SN:PGA_scaffold52158__1_contigs__length_21187 LN:21187 skipping SAM header line: @SQ SN:PGA_scaffold52161__1_contigs__length_13842 LN:13842 skipping SAM header line: @SQ SN:PGA_scaffold52163__1_contigs__length_14238 LN:14238 skipping SAM header line: @SQ SN:PGA_scaffold52167__1_contigs__length_13762 LN:13762 skipping SAM header line: @SQ SN:PGA_scaffold52169__1_contigs__length_11589 LN:11589 skipping SAM header line: @SQ SN:PGA_scaffold52173__1_contigs__length_22619 LN:22619 skipping SAM header line: @SQ SN:PGA_scaffold52175__1_contigs__length_18803 LN:18803 skipping SAM header line: @SQ SN:PGA_scaffold52180__1_contigs__length_20655 LN:20655 skipping SAM header line: @SQ SN:PGA_scaffold52184__1_contigs__length_18226 LN:18226 skipping SAM header line: @SQ SN:PGA_scaffold52189__1_contigs__length_25604 LN:25604 skipping SAM header line: @SQ SN:PGA_scaffold52190__1_contigs__length_13400 LN:13400 skipping SAM header line: @SQ SN:PGA_scaffold52197__1_contigs__length_10522 LN:10522 skipping SAM header line: @SQ SN:PGA_scaffold52199__1_contigs__length_32611 LN:32611 skipping SAM header line: @SQ SN:PGA_scaffold52201__1_contigs__length_22024 LN:22024 skipping SAM header line: @SQ SN:PGA_scaffold52202__1_contigs__length_16426 LN:16426 skipping SAM header line: @SQ SN:PGA_scaffold52203__1_contigs__length_13267 LN:13267 skipping SAM header line: @SQ SN:PGA_scaffold52204__1_contigs__length_17267 LN:17267 skipping SAM header line: @SQ SN:PGA_scaffold52211__1_contigs__length_36968 LN:36968 skipping SAM header line: @SQ SN:PGA_scaffold52212__1_contigs__length_11543 LN:11543 skipping SAM header line: @SQ SN:PGA_scaffold52215__1_contigs__length_42996 LN:42996 skipping SAM header line: @SQ SN:PGA_scaffold52217__1_contigs__length_15239 LN:15239 skipping SAM header line: @SQ SN:PGA_scaffold52222__1_contigs__length_39311 LN:39311 skipping SAM header line: @SQ SN:PGA_scaffold52224__1_contigs__length_12069 LN:12069 skipping SAM header line: @SQ SN:PGA_scaffold52226__1_contigs__length_21714 LN:21714 skipping SAM header line: @SQ SN:PGA_scaffold52229__1_contigs__length_13133 LN:13133 skipping SAM header line: @SQ SN:PGA_scaffold52230__1_contigs__length_27438 LN:27438 skipping SAM header line: @SQ SN:PGA_scaffold52231__1_contigs__length_13042 LN:13042 skipping SAM header line: @SQ SN:PGA_scaffold52232__1_contigs__length_13820 LN:13820 skipping SAM header line: @SQ SN:PGA_scaffold52233__1_contigs__length_27622 LN:27622 skipping SAM header line: @SQ SN:PGA_scaffold52235__1_contigs__length_15937 LN:15937 skipping SAM header line: @SQ SN:PGA_scaffold52236__1_contigs__length_17651 LN:17651 skipping SAM header line: @SQ SN:PGA_scaffold52237__1_contigs__length_15057 LN:15057 skipping SAM header line: @SQ SN:PGA_scaffold52240__1_contigs__length_19987 LN:19987 skipping SAM header line: @SQ SN:PGA_scaffold52241__1_contigs__length_14285 LN:14285 skipping SAM header line: @SQ SN:PGA_scaffold52244__1_contigs__length_18004 LN:18004 skipping SAM header line: @SQ SN:PGA_scaffold52245__1_contigs__length_11102 LN:11102 skipping SAM header line: @SQ SN:PGA_scaffold52250__1_contigs__length_10089 LN:10089 skipping SAM header line: @SQ SN:PGA_scaffold52251__1_contigs__length_14608 LN:14608 skipping SAM header line: @SQ SN:PGA_scaffold52253__1_contigs__length_10793 LN:10793 skipping SAM header line: @SQ SN:PGA_scaffold52256__1_contigs__length_10795 LN:10795 skipping SAM header line: @SQ SN:PGA_scaffold52257__1_contigs__length_12932 LN:12932 skipping SAM header line: @SQ SN:PGA_scaffold52260__1_contigs__length_29787 LN:29787 skipping SAM header line: @SQ SN:PGA_scaffold52263__1_contigs__length_26833 LN:26833 skipping SAM header line: @SQ SN:PGA_scaffold52264__1_contigs__length_15808 LN:15808 skipping SAM header line: @SQ SN:PGA_scaffold52265__1_contigs__length_12263 LN:12263 skipping SAM header line: @SQ SN:PGA_scaffold52266__1_contigs__length_35673 LN:35673 skipping SAM header line: @SQ SN:PGA_scaffold52267__1_contigs__length_10611 LN:10611 skipping SAM header line: @SQ SN:PGA_scaffold52269__1_contigs__length_14539 LN:14539 skipping SAM header line: @SQ SN:PGA_scaffold52270__1_contigs__length_19467 LN:19467 skipping SAM header line: @SQ SN:PGA_scaffold52271__1_contigs__length_24393 LN:24393 skipping SAM header line: @SQ SN:PGA_scaffold52273__1_contigs__length_10100 LN:10100 skipping SAM header line: @SQ SN:PGA_scaffold52278__1_contigs__length_16535 LN:16535 skipping SAM header line: @SQ SN:PGA_scaffold52280__1_contigs__length_20240 LN:20240 skipping SAM header line: @SQ SN:PGA_scaffold52281__1_contigs__length_28475 LN:28475 skipping SAM header line: @SQ SN:PGA_scaffold52284__1_contigs__length_17454 LN:17454 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold52349__1_contigs__length_37106 LN:37106 skipping SAM header line: @SQ SN:PGA_scaffold52350__1_contigs__length_45781 LN:45781 skipping SAM header line: @SQ SN:PGA_scaffold52359__1_contigs__length_33365 LN:33365 skipping SAM header line: @SQ SN:PGA_scaffold52364__1_contigs__length_18994 LN:18994 skipping SAM header line: @SQ SN:PGA_scaffold52367__1_contigs__length_13671 LN:13671 skipping SAM header line: @SQ SN:PGA_scaffold52376__1_contigs__length_13470 LN:13470 skipping SAM header line: @SQ SN:PGA_scaffold52380__1_contigs__length_12409 LN:12409 skipping SAM header line: @SQ SN:PGA_scaffold52384__1_contigs__length_27088 LN:27088 skipping SAM header line: @SQ SN:PGA_scaffold52385__1_contigs__length_21970 LN:21970 skipping SAM header line: @SQ SN:PGA_scaffold52387__1_contigs__length_40531 LN:40531 skipping SAM header line: @SQ SN:PGA_scaffold52389__1_contigs__length_11665 LN:11665 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold52478__1_contigs__length_11789 LN:11789 skipping SAM header line: @SQ SN:PGA_scaffold52541__1_contigs__length_11870 LN:11870 skipping SAM header line: @SQ SN:PGA_scaffold52549__1_contigs__length_10359 LN:10359 skipping SAM header line: @SQ SN:PGA_scaffold52575__1_contigs__length_11511 LN:11511 skipping SAM header line: @SQ SN:PGA_scaffold52641__1_contigs__length_10537 LN:10537 skipping SAM header line: @SQ SN:PGA_scaffold52688__1_contigs__length_10626 LN:10626 skipping SAM header line: @SQ SN:PGA_scaffold52695__1_contigs__length_11369 LN:11369 skipping SAM header line: @SQ SN:PGA_scaffold52716__1_contigs__length_10153 LN:10153 skipping SAM header line: @SQ SN:PGA_scaffold52724__1_contigs__length_10927 LN:10927 skipping SAM header line: @SQ SN:PGA_scaffold52749__1_contigs__length_11021 LN:11021 skipping SAM header line: @SQ SN:PGA_scaffold52752__1_contigs__length_10196 LN:10196 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold52863__1_contigs__length_10934 LN:10934 skipping SAM header line: @SQ SN:PGA_scaffold52864__1_contigs__length_13662 LN:13662 skipping SAM header line: @SQ SN:PGA_scaffold52869__1_contigs__length_35263 LN:35263 skipping SAM header line: @SQ SN:PGA_scaffold52870__1_contigs__length_19057 LN:19057 skipping SAM header line: @SQ SN:PGA_scaffold52871__1_contigs__length_11017 LN:11017 skipping SAM header line: @SQ SN:PGA_scaffold52872__1_contigs__length_34839 LN:34839 skipping SAM header line: @SQ SN:PGA_scaffold52873__1_contigs__length_19623 LN:19623 skipping SAM header line: @SQ SN:PGA_scaffold52877__1_contigs__length_10665 LN:10665 skipping SAM header line: @SQ SN:PGA_scaffold52880__1_contigs__length_17400 LN:17400 skipping SAM header line: @SQ SN:PGA_scaffold52881__1_contigs__length_25209 LN:25209 skipping SAM header line: @SQ SN:PGA_scaffold52888__1_contigs__length_16347 LN:16347 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold52972__1_contigs__length_13064 LN:13064 skipping SAM header line: @SQ SN:PGA_scaffold52973__1_contigs__length_33821 LN:33821 skipping SAM header line: @SQ SN:PGA_scaffold52974__1_contigs__length_14013 LN:14013 skipping SAM header line: @SQ SN:PGA_scaffold52977__1_contigs__length_18585 LN:18585 skipping SAM header line: @SQ SN:PGA_scaffold52978__1_contigs__length_12889 LN:12889 skipping SAM header line: @SQ SN:PGA_scaffold52979__1_contigs__length_30521 LN:30521 skipping SAM header line: @SQ SN:PGA_scaffold52980__1_contigs__length_17846 LN:17846 skipping SAM header line: @SQ SN:PGA_scaffold52983__1_contigs__length_10293 LN:10293 skipping SAM header line: @SQ SN:PGA_scaffold52984__1_contigs__length_28854 LN:28854 skipping SAM header line: @SQ SN:PGA_scaffold52992__1_contigs__length_12625 LN:12625 skipping SAM header line: @SQ SN:PGA_scaffold52996__1_contigs__length_20578 LN:20578 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold53082__1_contigs__length_17029 LN:17029 skipping SAM header line: @SQ SN:PGA_scaffold53084__1_contigs__length_14131 LN:14131 skipping SAM header line: @SQ SN:PGA_scaffold53101__1_contigs__length_11580 LN:11580 skipping SAM header line: @SQ SN:PGA_scaffold53106__1_contigs__length_10650 LN:10650 skipping SAM header line: @SQ SN:PGA_scaffold53108__1_contigs__length_12257 LN:12257 skipping SAM header line: @SQ SN:PGA_scaffold53111__1_contigs__length_19521 LN:19521 skipping SAM header line: @SQ SN:PGA_scaffold53115__1_contigs__length_10838 LN:10838 skipping SAM header line: @SQ SN:PGA_scaffold53127__1_contigs__length_10512 LN:10512 skipping SAM header line: @SQ SN:PGA_scaffold53131__1_contigs__length_10882 LN:10882 skipping SAM header line: @SQ SN:PGA_scaffold53138__1_contigs__length_10342 LN:10342 skipping SAM header line: @SQ SN:PGA_scaffold53152__1_contigs__length_15767 LN:15767 skipping SAM header line: @SQ SN:PGA_scaffold53160__1_contigs__length_11386 LN:11386 skipping SAM header line: @SQ SN:PGA_scaffold53163__1_contigs__length_29059 LN:29059 skipping SAM header line: @SQ SN:PGA_scaffold53164__1_contigs__length_16815 LN:16815 skipping SAM header line: @SQ SN:PGA_scaffold53166__1_contigs__length_16188 LN:16188 skipping SAM header line: @SQ SN:PGA_scaffold53177__1_contigs__length_13884 LN:13884 skipping SAM header line: @SQ SN:PGA_scaffold53180__1_contigs__length_11828 LN:11828 skipping SAM header line: @SQ SN:PGA_scaffold53186__1_contigs__length_29227 LN:29227 skipping SAM header line: @SQ SN:PGA_scaffold53188__1_contigs__length_13014 LN:13014 skipping SAM header line: @SQ SN:PGA_scaffold53196__1_contigs__length_30707 LN:30707 skipping SAM header line: @SQ SN:PGA_scaffold53206__1_contigs__length_15073 LN:15073 skipping SAM header line: @SQ SN:PGA_scaffold53207__1_contigs__length_12904 LN:12904 skipping SAM header line: @SQ SN:PGA_scaffold53212__1_contigs__length_12495 LN:12495 skipping SAM header line: @SQ SN:PGA_scaffold53214__1_contigs__length_21250 LN:21250 skipping SAM header line: @SQ SN:PGA_scaffold53215__1_contigs__length_21821 LN:21821 skipping SAM header line: @SQ SN:PGA_scaffold53218__1_contigs__length_23408 LN:23408 skipping SAM header line: @SQ SN:PGA_scaffold53244__1_contigs__length_16109 LN:16109 skipping SAM header line: @SQ SN:PGA_scaffold53277__1_contigs__length_12223 LN:12223 skipping SAM header line: @SQ SN:PGA_scaffold53289__1_contigs__length_24692 LN:24692 skipping SAM header line: @SQ SN:PGA_scaffold53296__1_contigs__length_20194 LN:20194 skipping SAM header line: @SQ SN:PGA_scaffold53312__1_contigs__length_25424 LN:25424 skipping SAM header line: @SQ SN:PGA_scaffold53331__1_contigs__length_18451 LN:18451 skipping SAM header line: @SQ SN:PGA_scaffold53334__1_contigs__length_11336 LN:11336 skipping SAM header line: @SQ SN:PGA_scaffold53335__1_contigs__length_22949 LN:22949 skipping SAM header line: @SQ SN:PGA_scaffold53336__1_contigs__length_10646 LN:10646 skipping SAM header line: @SQ SN:PGA_scaffold53339__1_contigs__length_17229 LN:17229 skipping SAM header line: @SQ SN:PGA_scaffold53343__1_contigs__length_31364 LN:31364 skipping SAM header line: @SQ SN:PGA_scaffold53347__1_contigs__length_23449 LN:23449 skipping SAM header line: @SQ SN:PGA_scaffold53388__1_contigs__length_11189 LN:11189 skipping SAM header line: @SQ SN:PGA_scaffold53392__1_contigs__length_13525 LN:13525 skipping SAM header line: @SQ SN:PGA_scaffold53394__1_contigs__length_11956 LN:11956 skipping SAM header line: @SQ SN:PGA_scaffold53396__1_contigs__length_10078 LN:10078 skipping SAM header line: @SQ SN:PGA_scaffold53410__1_contigs__length_14183 LN:14183 skipping SAM header line: @SQ SN:PGA_scaffold53417__1_contigs__length_17632 LN:17632 skipping SAM header line: @SQ SN:PGA_scaffold53419__1_contigs__length_15533 LN:15533 skipping SAM header line: @SQ SN:PGA_scaffold53421__1_contigs__length_10686 LN:10686 skipping SAM header line: @SQ SN:PGA_scaffold53423__1_contigs__length_23386 LN:23386 skipping SAM header line: @SQ SN:PGA_scaffold53430__1_contigs__length_19681 LN:19681 skipping SAM header line: @SQ SN:PGA_scaffold53438__1_contigs__length_14760 LN:14760 skipping SAM header line: @SQ SN:PGA_scaffold53441__1_contigs__length_23597 LN:23597 skipping SAM header line: @SQ SN:PGA_scaffold53443__1_contigs__length_13949 LN:13949 skipping SAM header line: @SQ SN:PGA_scaffold53448__1_contigs__length_12656 LN:12656 skipping SAM header line: @SQ SN:PGA_scaffold53449__1_contigs__length_12686 LN:12686 skipping SAM header line: @SQ SN:PGA_scaffold53457__1_contigs__length_13122 LN:13122 skipping SAM header line: @SQ SN:PGA_scaffold53460__1_contigs__length_15921 LN:15921 skipping SAM header line: @SQ SN:PGA_scaffold53461__1_contigs__length_12986 LN:12986 skipping SAM header line: @SQ SN:PGA_scaffold53464__1_contigs__length_15704 LN:15704 skipping SAM header line: @SQ SN:PGA_scaffold53467__1_contigs__length_12825 LN:12825 skipping SAM header line: @SQ SN:PGA_scaffold53469__1_contigs__length_12183 LN:12183 skipping SAM header line: @SQ SN:PGA_scaffold53470__1_contigs__length_15243 LN:15243 skipping SAM header line: @SQ SN:PGA_scaffold53471__1_contigs__length_15384 LN:15384 skipping SAM header line: @SQ SN:PGA_scaffold53477__1_contigs__length_13412 LN:13412 skipping SAM header line: @SQ SN:PGA_scaffold53481__1_contigs__length_19050 LN:19050 skipping SAM header line: @SQ SN:PGA_scaffold53490__1_contigs__length_16423 LN:16423 skipping SAM header line: @SQ SN:PGA_scaffold53498__1_contigs__length_19070 LN:19070 skipping SAM header line: @SQ SN:PGA_scaffold53500__1_contigs__length_17287 LN:17287 skipping SAM header line: @SQ SN:PGA_scaffold53505__1_contigs__length_21397 LN:21397 skipping SAM header line: @SQ SN:PGA_scaffold53508__1_contigs__length_19204 LN:19204 skipping SAM header line: @SQ SN:PGA_scaffold53509__1_contigs__length_13465 LN:13465 skipping SAM header line: @SQ SN:PGA_scaffold53510__1_contigs__length_15118 LN:15118 skipping SAM header line: @SQ SN:PGA_scaffold53515__1_contigs__length_20688 LN:20688 skipping SAM header line: @SQ SN:PGA_scaffold53525__1_contigs__length_21131 LN:21131 skipping SAM header line: @SQ SN:PGA_scaffold53529__1_contigs__length_13647 LN:13647 skipping SAM header line: @SQ SN:PGA_scaffold53543__1_contigs__length_20030 LN:20030 skipping SAM header line: @SQ SN:PGA_scaffold53545__1_contigs__length_11724 LN:11724 skipping SAM header line: @SQ SN:PGA_scaffold53546__1_contigs__length_19415 LN:19415 skipping SAM header line: @SQ SN:PGA_scaffold53547__1_contigs__length_11740 LN:11740 skipping SAM header line: @SQ SN:PGA_scaffold53549__1_contigs__length_17026 LN:17026 skipping SAM header line: @SQ SN:PGA_scaffold53550__1_contigs__length_11216 LN:11216 skipping SAM header line: @SQ SN:PGA_scaffold53555__1_contigs__length_12451 LN:12451 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold53629__1_contigs__length_13279 LN:13279 skipping SAM header line: @SQ SN:PGA_scaffold53631__1_contigs__length_12352 LN:12352 skipping SAM header line: @SQ SN:PGA_scaffold53633__1_contigs__length_37396 LN:37396 skipping SAM header line: @SQ SN:PGA_scaffold53634__1_contigs__length_12388 LN:12388 skipping SAM header line: @SQ SN:PGA_scaffold53635__1_contigs__length_16309 LN:16309 skipping SAM header line: @SQ SN:PGA_scaffold53636__1_contigs__length_15041 LN:15041 skipping SAM header line: @SQ SN:PGA_scaffold53637__1_contigs__length_11474 LN:11474 skipping SAM header line: @SQ SN:PGA_scaffold53639__1_contigs__length_33404 LN:33404 skipping SAM header line: @SQ SN:PGA_scaffold53640__1_contigs__length_21221 LN:21221 skipping SAM header line: @SQ SN:PGA_scaffold53641__1_contigs__length_23377 LN:23377 skipping SAM header line: @SQ SN:PGA_scaffold53642__1_contigs__length_22596 LN:22596 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold53663__1_contigs__length_15514 LN:15514 skipping SAM header line: @SQ SN:PGA_scaffold53664__1_contigs__length_26576 LN:26576 skipping SAM header line: @SQ SN:PGA_scaffold53666__1_contigs__length_20207 LN:20207 skipping SAM header line: @SQ SN:PGA_scaffold53667__1_contigs__length_13677 LN:13677 skipping SAM header line: @SQ SN:PGA_scaffold53670__1_contigs__length_14060 LN:14060 skipping SAM header line: @SQ SN:PGA_scaffold53671__1_contigs__length_11906 LN:11906 skipping SAM header line: @SQ SN:PGA_scaffold53672__1_contigs__length_17762 LN:17762 skipping SAM header line: @SQ SN:PGA_scaffold53676__1_contigs__length_16449 LN:16449 skipping SAM header line: @SQ SN:PGA_scaffold53678__1_contigs__length_14660 LN:14660 skipping SAM header line: @SQ SN:PGA_scaffold53680__1_contigs__length_28424 LN:28424 skipping SAM header line: @SQ SN:PGA_scaffold53681__1_contigs__length_13960 LN:13960 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold53770__1_contigs__length_45803 LN:45803 skipping SAM header line: @SQ SN:PGA_scaffold53771__1_contigs__length_16212 LN:16212 skipping SAM header line: @SQ SN:PGA_scaffold53772__1_contigs__length_21931 LN:21931 skipping SAM header line: @SQ SN:PGA_scaffold53773__1_contigs__length_15327 LN:15327 skipping SAM header line: @SQ SN:PGA_scaffold53774__1_contigs__length_13385 LN:13385 skipping SAM header line: @SQ SN:PGA_scaffold53777__1_contigs__length_11005 LN:11005 skipping SAM header line: @SQ SN:PGA_scaffold53792__1_contigs__length_11556 LN:11556 skipping SAM header line: @SQ SN:PGA_scaffold53810__1_contigs__length_10098 LN:10098 skipping SAM header line: @SQ SN:PGA_scaffold53840__1_contigs__length_10403 LN:10403 skipping SAM header line: @SQ SN:PGA_scaffold53848__1_contigs__length_10363 LN:10363 skipping SAM header line: @SQ SN:PGA_scaffold53856__1_contigs__length_10086 LN:10086 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold53980__1_contigs__length_11386 LN:11386 skipping SAM header line: @SQ SN:PGA_scaffold53982__1_contigs__length_10193 LN:10193 skipping SAM header line: @SQ SN:PGA_scaffold53987__1_contigs__length_11322 LN:11322 skipping SAM header line: @SQ SN:PGA_scaffold53989__1_contigs__length_55742 LN:55742 skipping SAM header line: @SQ SN:PGA_scaffold53990__1_contigs__length_50335 LN:50335 skipping SAM header line: @SQ SN:PGA_scaffold53991__1_contigs__length_51016 LN:51016 skipping SAM header line: @SQ SN:PGA_scaffold53992__1_contigs__length_30819 LN:30819 skipping SAM header line: @SQ SN:PGA_scaffold53993__1_contigs__length_26828 LN:26828 skipping SAM header line: @SQ SN:PGA_scaffold53994__1_contigs__length_45288 LN:45288 skipping SAM header line: @SQ SN:PGA_scaffold53995__1_contigs__length_36326 LN:36326 skipping SAM header line: @SQ SN:PGA_scaffold53996__1_contigs__length_14183 LN:14183 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold54021__1_contigs__length_10987 LN:10987 skipping SAM header line: @SQ SN:PGA_scaffold54022__1_contigs__length_25747 LN:25747 skipping SAM header line: @SQ SN:PGA_scaffold54023__1_contigs__length_15969 LN:15969 skipping SAM header line: @SQ SN:PGA_scaffold54025__1_contigs__length_16983 LN:16983 skipping SAM header line: @SQ SN:PGA_scaffold54026__1_contigs__length_10627 LN:10627 skipping SAM header line: @SQ SN:PGA_scaffold54055__1_contigs__length_15965 LN:15965 skipping SAM header line: @SQ SN:PGA_scaffold54069__1_contigs__length_15941 LN:15941 skipping SAM header line: @SQ SN:PGA_scaffold54070__1_contigs__length_11360 LN:11360 skipping SAM header line: @SQ SN:PGA_scaffold54074__1_contigs__length_16247 LN:16247 skipping SAM header line: @SQ SN:PGA_scaffold54085__1_contigs__length_10431 LN:10431 skipping SAM header line: @SQ SN:PGA_scaffold54104__1_contigs__length_10618 LN:10618 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold54233__1_contigs__length_29741 LN:29741 skipping SAM header line: @SQ SN:PGA_scaffold54239__1_contigs__length_29530 LN:29530 skipping SAM header line: @SQ SN:PGA_scaffold54258__1_contigs__length_11907 LN:11907 skipping SAM header line: @SQ SN:PGA_scaffold54284__1_contigs__length_11954 LN:11954 skipping SAM header line: @SQ SN:PGA_scaffold54339__1_contigs__length_19368 LN:19368 skipping SAM header line: @SQ SN:PGA_scaffold54342__1_contigs__length_60814 LN:60814 skipping SAM header line: @SQ SN:PGA_scaffold54354__1_contigs__length_12825 LN:12825 skipping SAM header line: @SQ SN:PGA_scaffold54397__1_contigs__length_20211 LN:20211 skipping SAM header line: @SQ SN:PGA_scaffold54412__1_contigs__length_23215 LN:23215 skipping SAM header line: @SQ SN:PGA_scaffold54423__1_contigs__length_13104 LN:13104 skipping SAM header line: @SQ SN:PGA_scaffold54428__1_contigs__length_16938 LN:16938 skipping SAM header line: @SQ SN:PGA_scaffold54453__1_contigs__length_12578 LN:12578 skipping SAM header line: @SQ SN:PGA_scaffold54471__1_contigs__length_14933 LN:14933 skipping SAM header line: @SQ SN:PGA_scaffold54489__1_contigs__length_14633 LN:14633 skipping SAM header line: @SQ SN:PGA_scaffold54496__1_contigs__length_28923 LN:28923 skipping SAM header line: @SQ SN:PGA_scaffold54557__1_contigs__length_18991 LN:18991 skipping SAM header line: @SQ SN:PGA_scaffold54565__1_contigs__length_14439 LN:14439 skipping SAM header line: @SQ SN:PGA_scaffold54574__1_contigs__length_14233 LN:14233 skipping SAM header line: @SQ SN:PGA_scaffold54609__1_contigs__length_19564 LN:19564 skipping SAM header line: @SQ SN:PGA_scaffold54611__1_contigs__length_13434 LN:13434 skipping SAM header line: @SQ SN:PGA_scaffold54631__1_contigs__length_16452 LN:16452 skipping SAM header line: @SQ SN:PGA_scaffold54635__1_contigs__length_10503 LN:10503 skipping SAM header line: @SQ SN:PGA_scaffold54643__1_contigs__length_26679 LN:26679 skipping SAM header line: @SQ SN:PGA_scaffold54645__1_contigs__length_19146 LN:19146 skipping SAM header line: @SQ SN:PGA_scaffold54667__1_contigs__length_20351 LN:20351 skipping SAM header line: @SQ SN:PGA_scaffold54720__1_contigs__length_14194 LN:14194 skipping SAM header line: @SQ SN:PGA_scaffold54729__1_contigs__length_20656 LN:20656 skipping SAM header line: @SQ SN:PGA_scaffold54736__1_contigs__length_11952 LN:11952 skipping SAM header line: @SQ SN:PGA_scaffold54772__1_contigs__length_14691 LN:14691 skipping SAM header line: @SQ SN:PGA_scaffold54800__1_contigs__length_13942 LN:13942 skipping SAM header line: @SQ SN:PGA_scaffold54816__1_contigs__length_12782 LN:12782 skipping SAM header line: @SQ SN:PGA_scaffold54822__1_contigs__length_14186 LN:14186 skipping SAM header line: @SQ SN:PGA_scaffold54840__1_contigs__length_14544 LN:14544 skipping SAM header line: @SQ SN:PGA_scaffold54842__1_contigs__length_13625 LN:13625 skipping SAM header line: @SQ SN:PGA_scaffold54848__1_contigs__length_13677 LN:13677 skipping SAM header line: @SQ SN:PGA_scaffold54849__1_contigs__length_14411 LN:14411 skipping SAM header line: @SQ SN:PGA_scaffold54850__1_contigs__length_19928 LN:19928 skipping SAM header line: @SQ SN:PGA_scaffold54852__1_contigs__length_16901 LN:16901 skipping SAM header line: @SQ SN:PGA_scaffold54853__1_contigs__length_19238 LN:19238 skipping SAM header line: @SQ SN:PGA_scaffold54868__1_contigs__length_14683 LN:14683 skipping SAM header line: @SQ SN:PGA_scaffold54887__1_contigs__length_29161 LN:29161 skipping SAM header line: @SQ SN:PGA_scaffold54901__1_contigs__length_37309 LN:37309 skipping SAM header line: @SQ SN:PGA_scaffold54915__1_contigs__length_13087 LN:13087 skipping SAM header line: @SQ SN:PGA_scaffold54922__1_contigs__length_17131 LN:17131 skipping SAM header line: @SQ SN:PGA_scaffold54934__1_contigs__length_12360 LN:12360 skipping SAM header line: @SQ SN:PGA_scaffold54951__1_contigs__length_15242 LN:15242 skipping SAM header line: @SQ SN:PGA_scaffold54955__1_contigs__length_10447 LN:10447 skipping SAM header line: @SQ SN:PGA_scaffold54957__1_contigs__length_12953 LN:12953 skipping SAM header line: @SQ SN:PGA_scaffold54959__1_contigs__length_14182 LN:14182 skipping SAM header line: @SQ SN:PGA_scaffold54964__1_contigs__length_11712 LN:11712 skipping SAM header line: @SQ SN:PGA_scaffold54965__1_contigs__length_38374 LN:38374 skipping SAM header line: @SQ SN:PGA_scaffold54967__1_contigs__length_21322 LN:21322 skipping SAM header line: @SQ SN:PGA_scaffold54972__1_contigs__length_14076 LN:14076 skipping SAM header line: @SQ SN:PGA_scaffold54973__1_contigs__length_10788 LN:10788 skipping SAM header line: @SQ SN:PGA_scaffold54975__1_contigs__length_14701 LN:14701 skipping SAM header line: @SQ SN:PGA_scaffold54989__1_contigs__length_11216 LN:11216 skipping SAM header line: @SQ SN:PGA_scaffold54990__1_contigs__length_19079 LN:19079 skipping SAM header line: @SQ SN:PGA_scaffold54993__1_contigs__length_10167 LN:10167 skipping SAM header line: @SQ SN:PGA_scaffold54995__1_contigs__length_18586 LN:18586 skipping SAM header line: @SQ SN:PGA_scaffold54997__1_contigs__length_20535 LN:20535 skipping SAM header line: @SQ SN:PGA_scaffold54999__1_contigs__length_31291 LN:31291 skipping SAM header line: @SQ SN:PGA_scaffold55001__1_contigs__length_12231 LN:12231 skipping SAM header line: @SQ SN:PGA_scaffold55037__1_contigs__length_32580 LN:32580 skipping SAM header line: @SQ SN:PGA_scaffold55042__1_contigs__length_13905 LN:13905 skipping SAM header line: @SQ SN:PGA_scaffold55044__1_contigs__length_15251 LN:15251 skipping SAM header line: @SQ SN:PGA_scaffold55047__1_contigs__length_11091 LN:11091 skipping SAM header line: @SQ SN:PGA_scaffold55055__1_contigs__length_13033 LN:13033 skipping SAM header line: @SQ SN:PGA_scaffold55058__1_contigs__length_13702 LN:13702 skipping SAM header line: @SQ SN:PGA_scaffold55061__1_contigs__length_19002 LN:19002 skipping SAM header line: @SQ SN:PGA_scaffold55063__1_contigs__length_13826 LN:13826 skipping SAM header line: @SQ SN:PGA_scaffold55069__1_contigs__length_21310 LN:21310 skipping SAM header line: @SQ SN:PGA_scaffold55081__1_contigs__length_22818 LN:22818 skipping SAM header line: @SQ SN:PGA_scaffold55083__1_contigs__length_45318 LN:45318 skipping SAM header line: @SQ SN:PGA_scaffold55088__1_contigs__length_30665 LN:30665 skipping SAM header line: @SQ SN:PGA_scaffold55103__1_contigs__length_19992 LN:19992 skipping SAM header line: @SQ SN:PGA_scaffold55115__1_contigs__length_20483 LN:20483 skipping SAM header line: @SQ SN:PGA_scaffold55117__1_contigs__length_18219 LN:18219 skipping SAM header line: @SQ SN:PGA_scaffold55135__1_contigs__length_48442 LN:48442 skipping SAM header line: @SQ SN:PGA_scaffold55148__1_contigs__length_17146 LN:17146 skipping SAM header line: @SQ SN:PGA_scaffold55176__1_contigs__length_14221 LN:14221 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold55219__1_contigs__length_18163 LN:18163 skipping SAM header line: @SQ SN:PGA_scaffold55226__1_contigs__length_24483 LN:24483 skipping SAM header line: @SQ SN:PGA_scaffold55227__1_contigs__length_17144 LN:17144 skipping SAM header line: @SQ SN:PGA_scaffold55230__1_contigs__length_29088 LN:29088 skipping SAM header line: @SQ SN:PGA_scaffold55232__1_contigs__length_10417 LN:10417 skipping SAM header line: @SQ SN:PGA_scaffold55233__1_contigs__length_18596 LN:18596 skipping SAM header line: @SQ SN:PGA_scaffold55237__1_contigs__length_17601 LN:17601 skipping SAM header line: @SQ SN:PGA_scaffold55238__1_contigs__length_15323 LN:15323 skipping SAM header line: @SQ SN:PGA_scaffold55241__1_contigs__length_24001 LN:24001 skipping SAM header line: @SQ SN:PGA_scaffold55242__1_contigs__length_10149 LN:10149 skipping SAM header line: @SQ SN:PGA_scaffold55244__1_contigs__length_14396 LN:14396 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold55275__1_contigs__length_16503 LN:16503 skipping SAM header line: @SQ SN:PGA_scaffold55278__1_contigs__length_54668 LN:54668 skipping SAM header line: @SQ SN:PGA_scaffold55279__1_contigs__length_14909 LN:14909 skipping SAM header line: @SQ SN:PGA_scaffold55286__1_contigs__length_12413 LN:12413 skipping SAM header line: @SQ SN:PGA_scaffold55287__1_contigs__length_11004 LN:11004 skipping SAM header line: @SQ SN:PGA_scaffold55290__1_contigs__length_16300 LN:16300 skipping SAM header line: @SQ SN:PGA_scaffold55294__1_contigs__length_17063 LN:17063 skipping SAM header line: @SQ SN:PGA_scaffold55296__1_contigs__length_51595 LN:51595 skipping SAM header line: @SQ SN:PGA_scaffold55298__1_contigs__length_13382 LN:13382 skipping SAM header line: @SQ SN:PGA_scaffold55301__1_contigs__length_11234 LN:11234 skipping SAM header line: @SQ SN:PGA_scaffold55312__1_contigs__length_15052 LN:15052 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold55363__1_contigs__length_25886 LN:25886 skipping SAM header line: @SQ SN:PGA_scaffold55365__1_contigs__length_17101 LN:17101 skipping SAM header line: @SQ SN:PGA_scaffold55367__1_contigs__length_18647 LN:18647 skipping SAM header line: @SQ SN:PGA_scaffold55374__1_contigs__length_17592 LN:17592 skipping SAM header line: @SQ SN:PGA_scaffold55375__1_contigs__length_51625 LN:51625 skipping SAM header line: @SQ SN:PGA_scaffold55377__1_contigs__length_13962 LN:13962 skipping SAM header line: @SQ SN:PGA_scaffold55378__1_contigs__length_34882 LN:34882 skipping SAM header line: @SQ SN:PGA_scaffold55380__1_contigs__length_20698 LN:20698 skipping SAM header line: @SQ SN:PGA_scaffold55381__1_contigs__length_30600 LN:30600 skipping SAM header line: @SQ SN:PGA_scaffold55383__1_contigs__length_17253 LN:17253 skipping SAM header line: @SQ SN:PGA_scaffold55384__1_contigs__length_12158 LN:12158 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold55681__1_contigs__length_11504 LN:11504 skipping SAM header line: @SQ SN:PGA_scaffold55687__1_contigs__length_19196 LN:19196 skipping SAM header line: @SQ SN:PGA_scaffold55689__1_contigs__length_28897 LN:28897 skipping SAM header line: @SQ SN:PGA_scaffold55697__1_contigs__length_10718 LN:10718 skipping SAM header line: @SQ SN:PGA_scaffold55700__1_contigs__length_17384 LN:17384 skipping SAM header line: @SQ SN:PGA_scaffold55710__1_contigs__length_17064 LN:17064 skipping SAM header line: @SQ SN:PGA_scaffold55711__1_contigs__length_39787 LN:39787 skipping SAM header line: @SQ SN:PGA_scaffold55712__1_contigs__length_14233 LN:14233 skipping SAM header line: @SQ SN:PGA_scaffold55713__1_contigs__length_11171 LN:11171 skipping SAM header line: @SQ SN:PGA_scaffold55714__1_contigs__length_36372 LN:36372 skipping SAM header line: @SQ SN:PGA_scaffold55715__1_contigs__length_14986 LN:14986 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold55939__1_contigs__length_15504 LN:15504 skipping SAM header line: @SQ SN:PGA_scaffold55973__1_contigs__length_17533 LN:17533 skipping SAM header line: @SQ SN:PGA_scaffold55979__1_contigs__length_33616 LN:33616 skipping SAM header line: @SQ SN:PGA_scaffold55985__1_contigs__length_17195 LN:17195 skipping SAM header line: @SQ SN:PGA_scaffold55988__1_contigs__length_26602 LN:26602 skipping SAM header line: @SQ SN:PGA_scaffold56009__1_contigs__length_11223 LN:11223 skipping SAM header line: @SQ SN:PGA_scaffold56014__1_contigs__length_12441 LN:12441 skipping SAM header line: @SQ SN:PGA_scaffold56016__1_contigs__length_10736 LN:10736 skipping SAM header line: @SQ SN:PGA_scaffold56019__1_contigs__length_15008 LN:15008 skipping SAM header line: @SQ SN:PGA_scaffold56024__1_contigs__length_10541 LN:10541 skipping SAM header line: @SQ SN:PGA_scaffold56026__1_contigs__length_29839 LN:29839 skipping SAM header line: @SQ SN:PGA_scaffold56064__1_contigs__length_16175 LN:16175 skipping SAM header line: @SQ SN:PGA_scaffold56081__1_contigs__length_20450 LN:20450 skipping SAM header line: @SQ SN:PGA_scaffold56083__1_contigs__length_19051 LN:19051 skipping SAM header line: @SQ SN:PGA_scaffold56091__1_contigs__length_39544 LN:39544 skipping SAM header line: @SQ SN:PGA_scaffold56116__1_contigs__length_20901 LN:20901 skipping SAM header line: @SQ SN:PGA_scaffold56125__1_contigs__length_14392 LN:14392 skipping SAM header line: @SQ SN:PGA_scaffold56142__1_contigs__length_10160 LN:10160 skipping SAM header line: @SQ SN:PGA_scaffold56154__1_contigs__length_14463 LN:14463 skipping SAM header line: @SQ SN:PGA_scaffold56176__1_contigs__length_14418 LN:14418 skipping SAM header line: @SQ SN:PGA_scaffold56186__1_contigs__length_13349 LN:13349 skipping SAM header line: @SQ SN:PGA_scaffold56187__1_contigs__length_24105 LN:24105 skipping SAM header line: @SQ SN:PGA_scaffold56230__1_contigs__length_13082 LN:13082 skipping SAM header line: @SQ SN:PGA_scaffold56245__1_contigs__length_21244 LN:21244 skipping SAM header line: @SQ SN:PGA_scaffold56261__1_contigs__length_13085 LN:13085 skipping SAM header line: @SQ SN:PGA_scaffold56268__1_contigs__length_16080 LN:16080 skipping SAM header line: @SQ SN:PGA_scaffold56275__1_contigs__length_11474 LN:11474 skipping SAM header line: @SQ SN:PGA_scaffold56308__1_contigs__length_11602 LN:11602 skipping SAM header line: @SQ SN:PGA_scaffold56311__1_contigs__length_10546 LN:10546 skipping SAM header line: @SQ SN:PGA_scaffold56313__1_contigs__length_11286 LN:11286 skipping SAM header line: @SQ SN:PGA_scaffold56319__1_contigs__length_13227 LN:13227 skipping SAM header line: @SQ SN:PGA_scaffold56338__1_contigs__length_12796 LN:12796 skipping SAM header line: @SQ SN:PGA_scaffold56341__1_contigs__length_12059 LN:12059 skipping SAM header line: @SQ SN:PGA_scaffold56347__1_contigs__length_13124 LN:13124 skipping SAM header line: @SQ SN:PGA_scaffold56365__1_contigs__length_56315 LN:56315 skipping SAM header line: @SQ SN:PGA_scaffold56374__1_contigs__length_10090 LN:10090 skipping SAM header line: @SQ SN:PGA_scaffold56375__1_contigs__length_33113 LN:33113 skipping SAM header line: @SQ SN:PGA_scaffold56376__1_contigs__length_28896 LN:28896 skipping SAM header line: @SQ SN:PGA_scaffold56393__1_contigs__length_13084 LN:13084 skipping SAM header line: @SQ SN:PGA_scaffold56399__1_contigs__length_15266 LN:15266 skipping SAM header line: @SQ SN:PGA_scaffold56403__1_contigs__length_27233 LN:27233 skipping SAM header line: @SQ SN:PGA_scaffold56411__1_contigs__length_14196 LN:14196 skipping SAM header line: @SQ SN:PGA_scaffold56417__1_contigs__length_13131 LN:13131 skipping SAM header line: @SQ SN:PGA_scaffold56419__1_contigs__length_20741 LN:20741 skipping SAM header line: @SQ SN:PGA_scaffold56428__1_contigs__length_13217 LN:13217 skipping SAM header line: @SQ SN:PGA_scaffold56433__1_contigs__length_17759 LN:17759 skipping SAM header line: @SQ SN:PGA_scaffold56436__1_contigs__length_16300 LN:16300 skipping SAM header line: @SQ SN:PGA_scaffold56440__1_contigs__length_10078 LN:10078 skipping SAM header line: @SQ SN:PGA_scaffold56442__1_contigs__length_16305 LN:16305 skipping SAM header line: @SQ SN:PGA_scaffold56443__1_contigs__length_12552 LN:12552 skipping SAM header line: @SQ SN:PGA_scaffold56457__1_contigs__length_13071 LN:13071 skipping SAM header line: @SQ SN:PGA_scaffold56463__1_contigs__length_12558 LN:12558 skipping SAM header line: @SQ SN:PGA_scaffold56465__1_contigs__length_19588 LN:19588 skipping SAM header line: @SQ SN:PGA_scaffold56467__1_contigs__length_18178 LN:18178 skipping SAM header line: @SQ SN:PGA_scaffold56475__1_contigs__length_14575 LN:14575 skipping SAM header line: @SQ SN:PGA_scaffold56489__1_contigs__length_12439 LN:12439 skipping SAM header line: @SQ SN:PGA_scaffold56494__1_contigs__length_10010 LN:10010 skipping SAM header line: @SQ SN:PGA_scaffold56499__1_contigs__length_12010 LN:12010 skipping SAM header line: @SQ SN:PGA_scaffold56500__1_contigs__length_11740 LN:11740 skipping SAM header line: @SQ SN:PGA_scaffold56503__1_contigs__length_10036 LN:10036 skipping SAM header line: @SQ SN:PGA_scaffold56506__1_contigs__length_25305 LN:25305 skipping SAM header line: @SQ SN:PGA_scaffold56509__1_contigs__length_19298 LN:19298 skipping SAM header line: @SQ SN:PGA_scaffold56518__1_contigs__length_13579 LN:13579 skipping SAM header line: @SQ SN:PGA_scaffold56527__1_contigs__length_13112 LN:13112 skipping SAM header line: @SQ SN:PGA_scaffold56529__1_contigs__length_12800 LN:12800 skipping SAM header line: @SQ SN:PGA_scaffold56535__1_contigs__length_21486 LN:21486 skipping SAM header line: @SQ SN:PGA_scaffold56536__1_contigs__length_11176 LN:11176 skipping SAM header line: @SQ SN:PGA_scaffold56542__1_contigs__length_24721 LN:24721 skipping SAM header line: @SQ SN:PGA_scaffold56547__1_contigs__length_12407 LN:12407 skipping SAM header line: @SQ SN:PGA_scaffold56551__1_contigs__length_13479 LN:13479 skipping SAM header line: @SQ SN:PGA_scaffold56553__1_contigs__length_13134 LN:13134 skipping SAM header line: @SQ SN:PGA_scaffold56574__1_contigs__length_17329 LN:17329 skipping SAM header line: @SQ SN:PGA_scaffold56579__1_contigs__length_23699 LN:23699 skipping SAM header line: @SQ SN:PGA_scaffold56582__1_contigs__length_18210 LN:18210 skipping SAM header line: @SQ SN:PGA_scaffold56590__1_contigs__length_14998 LN:14998 skipping SAM header line: @SQ SN:PGA_scaffold56592__1_contigs__length_19589 LN:19589 skipping SAM header line: @SQ SN:PGA_scaffold56595__1_contigs__length_20833 LN:20833 skipping SAM header line: @SQ SN:PGA_scaffold56596__1_contigs__length_12555 LN:12555 skipping SAM header line: @SQ SN:PGA_scaffold56599__1_contigs__length_12723 LN:12723 skipping SAM header line: @SQ SN:PGA_scaffold56602__1_contigs__length_17823 LN:17823 skipping SAM header line: @SQ SN:PGA_scaffold56606__1_contigs__length_14889 LN:14889 skipping SAM header line: @SQ SN:PGA_scaffold56607__1_contigs__length_15577 LN:15577 skipping SAM header line: @SQ SN:PGA_scaffold56608__1_contigs__length_12358 LN:12358 skipping SAM header line: @SQ SN:PGA_scaffold56609__1_contigs__length_10523 LN:10523 skipping SAM header line: @SQ SN:PGA_scaffold56610__1_contigs__length_11746 LN:11746 skipping SAM header line: @SQ SN:PGA_scaffold56611__1_contigs__length_19943 LN:19943 skipping SAM header line: @SQ SN:PGA_scaffold56612__1_contigs__length_11990 LN:11990 skipping SAM header line: @SQ SN:PGA_scaffold56614__1_contigs__length_11444 LN:11444 skipping SAM header line: @SQ SN:PGA_scaffold56616__1_contigs__length_17619 LN:17619 skipping SAM header line: @SQ SN:PGA_scaffold56618__1_contigs__length_19692 LN:19692 skipping SAM header line: @SQ SN:PGA_scaffold56619__1_contigs__length_10485 LN:10485 skipping SAM header line: @SQ SN:PGA_scaffold56620__1_contigs__length_30848 LN:30848 skipping SAM header line: @SQ SN:PGA_scaffold56621__1_contigs__length_11876 LN:11876 skipping SAM header line: @SQ SN:PGA_scaffold56622__1_contigs__length_14672 LN:14672 skipping SAM header line: @SQ SN:PGA_scaffold56625__1_contigs__length_66358 LN:66358 skipping SAM header line: @SQ SN:PGA_scaffold56626__1_contigs__length_16162 LN:16162 skipping SAM header line: @SQ SN:PGA_scaffold56627__1_contigs__length_12410 LN:12410 skipping SAM header line: @SQ SN:PGA_scaffold56629__1_contigs__length_11682 LN:11682 skipping SAM header line: @SQ SN:PGA_scaffold56631__1_contigs__length_19701 LN:19701 skipping SAM header line: @SQ SN:PGA_scaffold56634__1_contigs__length_14842 LN:14842 skipping SAM header line: @SQ SN:PGA_scaffold56635__1_contigs__length_34227 LN:34227 skipping SAM header line: @SQ SN:PGA_scaffold56639__1_contigs__length_16062 LN:16062 skipping SAM header line: @SQ SN:PGA_scaffold56644__1_contigs__length_23869 LN:23869 skipping SAM header line: @SQ SN:PGA_scaffold56646__1_contigs__length_12978 LN:12978 skipping SAM header line: @SQ SN:PGA_scaffold56648__1_contigs__length_11346 LN:11346 skipping SAM header line: @SQ SN:PGA_scaffold56649__1_contigs__length_18919 LN:18919 skipping SAM header line: @SQ SN:PGA_scaffold56650__1_contigs__length_33575 LN:33575 skipping SAM header line: @SQ SN:PGA_scaffold56651__1_contigs__length_24606 LN:24606 skipping SAM header line: @SQ SN:PGA_scaffold56652__1_contigs__length_44611 LN:44611 skipping SAM header line: @SQ SN:PGA_scaffold56653__1_contigs__length_18615 LN:18615 skipping SAM header line: @SQ SN:PGA_scaffold56663__1_contigs__length_11214 LN:11214 skipping SAM header line: @SQ SN:PGA_scaffold56664__1_contigs__length_22031 LN:22031 skipping SAM header line: @SQ SN:PGA_scaffold56671__1_contigs__length_32469 LN:32469 skipping SAM header line: @SQ SN:PGA_scaffold56672__1_contigs__length_12651 LN:12651 skipping SAM header line: @SQ SN:PGA_scaffold56675__1_contigs__length_18994 LN:18994 skipping SAM header line: @SQ SN:PGA_scaffold56676__1_contigs__length_20253 LN:20253 skipping SAM header line: @SQ SN:PGA_scaffold56691__1_contigs__length_31095 LN:31095 skipping SAM header line: @SQ SN:PGA_scaffold56712__1_contigs__length_26611 LN:26611 skipping SAM header line: @SQ SN:PGA_scaffold56715__1_contigs__length_11138 LN:11138 skipping SAM header line: @SQ SN:PGA_scaffold56716__1_contigs__length_22583 LN:22583 skipping SAM header line: @SQ SN:PGA_scaffold56720__1_contigs__length_40419 LN:40419 skipping SAM header line: @SQ SN:PGA_scaffold56721__1_contigs__length_22627 LN:22627 skipping SAM header line: @SQ SN:PGA_scaffold56722__1_contigs__length_46018 LN:46018 skipping SAM header line: @SQ SN:PGA_scaffold56723__1_contigs__length_16153 LN:16153 skipping SAM header line: @SQ SN:PGA_scaffold56724__1_contigs__length_20256 LN:20256 skipping SAM header line: @SQ SN:PGA_scaffold56725__1_contigs__length_15951 LN:15951 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold56916__1_contigs__length_32078 LN:32078 skipping SAM header line: @SQ SN:PGA_scaffold56917__1_contigs__length_16343 LN:16343 skipping SAM header line: @SQ SN:PGA_scaffold56920__1_contigs__length_14216 LN:14216 skipping SAM header line: @SQ SN:PGA_scaffold56931__1_contigs__length_13762 LN:13762 skipping SAM header line: @SQ SN:PGA_scaffold56934__1_contigs__length_28323 LN:28323 skipping SAM header line: @SQ SN:PGA_scaffold56936__1_contigs__length_21861 LN:21861 skipping SAM header line: @SQ SN:PGA_scaffold56938__1_contigs__length_11684 LN:11684 skipping SAM header line: @SQ SN:PGA_scaffold56939__1_contigs__length_14281 LN:14281 skipping SAM header line: @SQ SN:PGA_scaffold56941__1_contigs__length_10058 LN:10058 skipping SAM header line: @SQ SN:PGA_scaffold56943__1_contigs__length_24018 LN:24018 skipping SAM header line: @SQ SN:PGA_scaffold56944__1_contigs__length_16559 LN:16559 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold56989__1_contigs__length_15907 LN:15907 skipping SAM header line: @SQ SN:PGA_scaffold56991__1_contigs__length_11314 LN:11314 skipping SAM header line: @SQ SN:PGA_scaffold56992__1_contigs__length_18368 LN:18368 skipping SAM header line: @SQ SN:PGA_scaffold57007__1_contigs__length_15181 LN:15181 skipping SAM header line: @SQ SN:PGA_scaffold57011__1_contigs__length_14727 LN:14727 skipping SAM header line: @SQ SN:PGA_scaffold57014__1_contigs__length_17651 LN:17651 skipping SAM header line: @SQ SN:PGA_scaffold57027__1_contigs__length_10516 LN:10516 skipping SAM header line: @SQ SN:PGA_scaffold57028__1_contigs__length_12789 LN:12789 skipping SAM header line: @SQ SN:PGA_scaffold57031__1_contigs__length_12772 LN:12772 skipping SAM header line: @SQ SN:PGA_scaffold57035__1_contigs__length_23686 LN:23686 skipping SAM header line: @SQ SN:PGA_scaffold57040__1_contigs__length_10011 LN:10011 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57086__1_contigs__length_15416 LN:15416 skipping SAM header line: @SQ SN:PGA_scaffold57091__1_contigs__length_11141 LN:11141 skipping SAM header line: @SQ SN:PGA_scaffold57097__1_contigs__length_26486 LN:26486 skipping SAM header line: @SQ SN:PGA_scaffold57101__1_contigs__length_12587 LN:12587 skipping SAM header line: @SQ SN:PGA_scaffold57103__1_contigs__length_10399 LN:10399 skipping SAM header line: @SQ SN:PGA_scaffold57106__1_contigs__length_11353 LN:11353 skipping SAM header line: @SQ SN:PGA_scaffold57108__1_contigs__length_20164 LN:20164 skipping SAM header line: @SQ SN:PGA_scaffold57125__1_contigs__length_17547 LN:17547 skipping SAM header line: @SQ SN:PGA_scaffold57133__1_contigs__length_26233 LN:26233 skipping SAM header line: @SQ SN:PGA_scaffold57139__1_contigs__length_21298 LN:21298 skipping SAM header line: @SQ SN:PGA_scaffold57144__1_contigs__length_24604 LN:24604 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57216__1_contigs__length_15945 LN:15945 skipping SAM header line: @SQ SN:PGA_scaffold57220__1_contigs__length_13709 LN:13709 skipping SAM header line: @SQ SN:PGA_scaffold57223__1_contigs__length_11171 LN:11171 skipping SAM header line: @SQ SN:PGA_scaffold57230__1_contigs__length_11444 LN:11444 skipping SAM header line: @SQ SN:PGA_scaffold57233__1_contigs__length_23586 LN:23586 skipping SAM header line: @SQ SN:PGA_scaffold57244__1_contigs__length_12199 LN:12199 skipping SAM header line: @SQ SN:PGA_scaffold57245__1_contigs__length_14215 LN:14215 skipping SAM header line: @SQ SN:PGA_scaffold57246__1_contigs__length_10239 LN:10239 skipping SAM header line: @SQ SN:PGA_scaffold57261__1_contigs__length_16257 LN:16257 skipping SAM header line: @SQ SN:PGA_scaffold57268__1_contigs__length_12891 LN:12891 skipping SAM header line: @SQ SN:PGA_scaffold57284__1_contigs__length_13129 LN:13129 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57312__1_contigs__length_13623 LN:13623 skipping SAM header line: @SQ SN:PGA_scaffold57316__1_contigs__length_16642 LN:16642 skipping SAM header line: @SQ SN:PGA_scaffold57328__1_contigs__length_19123 LN:19123 skipping SAM header line: @SQ SN:PGA_scaffold57329__1_contigs__length_17968 LN:17968 skipping SAM header line: @SQ SN:PGA_scaffold57332__1_contigs__length_16278 LN:16278 skipping SAM header line: @SQ SN:PGA_scaffold57334__1_contigs__length_17465 LN:17465 skipping SAM header line: @SQ SN:PGA_scaffold57336__1_contigs__length_21091 LN:21091 skipping SAM header line: @SQ SN:PGA_scaffold57338__1_contigs__length_22983 LN:22983 skipping SAM header line: @SQ SN:PGA_scaffold57347__1_contigs__length_11335 LN:11335 skipping SAM header line: @SQ SN:PGA_scaffold57351__1_contigs__length_10777 LN:10777 skipping SAM header line: @SQ SN:PGA_scaffold57355__1_contigs__length_14975 LN:14975 skipping SAM header line: @SQ SN:PGA_scaffold57359__1_contigs__length_20709 LN:20709 skipping SAM header line: @SQ SN:PGA_scaffold57360__1_contigs__length_17628 LN:17628 skipping SAM header line: @SQ SN:PGA_scaffold57361__1_contigs__length_21891 LN:21891 skipping SAM header line: @SQ SN:PGA_scaffold57365__1_contigs__length_12556 LN:12556 skipping SAM header line: @SQ SN:PGA_scaffold57369__1_contigs__length_12683 LN:12683 skipping SAM header line: @SQ SN:PGA_scaffold57371__1_contigs__length_10127 LN:10127 skipping SAM header line: @SQ SN:PGA_scaffold57375__1_contigs__length_16567 LN:16567 skipping SAM header line: @SQ SN:PGA_scaffold57379__1_contigs__length_14455 LN:14455 skipping SAM header line: @SQ SN:PGA_scaffold57380__1_contigs__length_11906 LN:11906 skipping SAM header line: @SQ SN:PGA_scaffold57383__1_contigs__length_10463 LN:10463 skipping SAM header line: @SQ SN:PGA_scaffold57394__1_contigs__length_17459 LN:17459 skipping SAM header line: @SQ SN:PGA_scaffold57398__1_contigs__length_30770 LN:30770 skipping SAM header line: @SQ SN:PGA_scaffold57406__1_contigs__length_13462 LN:13462 skipping SAM header line: @SQ SN:PGA_scaffold57408__1_contigs__length_12401 LN:12401 skipping SAM header line: @SQ SN:PGA_scaffold57413__1_contigs__length_17925 LN:17925 skipping SAM header line: @SQ SN:PGA_scaffold57416__1_contigs__length_16066 LN:16066 skipping SAM header line: @SQ SN:PGA_scaffold57417__1_contigs__length_12627 LN:12627 skipping SAM header line: @SQ SN:PGA_scaffold57418__1_contigs__length_18434 LN:18434 skipping SAM header line: @SQ SN:PGA_scaffold57419__1_contigs__length_56657 LN:56657 skipping SAM header line: @SQ SN:PGA_scaffold57421__1_contigs__length_15469 LN:15469 skipping SAM header line: @SQ SN:PGA_scaffold57422__1_contigs__length_21905 LN:21905 skipping SAM header line: @SQ SN:PGA_scaffold57424__1_contigs__length_19233 LN:19233 skipping SAM header line: @SQ SN:PGA_scaffold57425__1_contigs__length_15539 LN:15539 skipping SAM header line: @SQ SN:PGA_scaffold57430__1_contigs__length_17331 LN:17331 skipping SAM header line: @SQ SN:PGA_scaffold57435__1_contigs__length_39348 LN:39348 skipping SAM header line: @SQ SN:PGA_scaffold57440__1_contigs__length_27602 LN:27602 skipping SAM header line: @SQ SN:PGA_scaffold57454__1_contigs__length_22572 LN:22572 skipping SAM header line: @SQ SN:PGA_scaffold57457__1_contigs__length_13117 LN:13117 skipping SAM header line: @SQ SN:PGA_scaffold57463__1_contigs__length_20179 LN:20179 skipping SAM header line: @SQ SN:PGA_scaffold57475__1_contigs__length_18112 LN:18112 skipping SAM header line: @SQ SN:PGA_scaffold57477__1_contigs__length_11764 LN:11764 skipping SAM header line: @SQ SN:PGA_scaffold57478__1_contigs__length_21118 LN:21118 skipping SAM header line: @SQ SN:PGA_scaffold57479__1_contigs__length_34907 LN:34907 skipping SAM header line: @SQ SN:PGA_scaffold57481__1_contigs__length_24061 LN:24061 skipping SAM header line: @SQ SN:PGA_scaffold57486__1_contigs__length_12790 LN:12790 skipping SAM header line: @SQ SN:PGA_scaffold57487__1_contigs__length_17303 LN:17303 skipping SAM header line: @SQ SN:PGA_scaffold57488__1_contigs__length_21119 LN:21119 skipping SAM header line: @SQ SN:PGA_scaffold57489__1_contigs__length_13319 LN:13319 skipping SAM header line: @SQ SN:PGA_scaffold57490__1_contigs__length_31663 LN:31663 skipping SAM header line: @SQ SN:PGA_scaffold57492__1_contigs__length_41689 LN:41689 skipping SAM header line: @SQ SN:PGA_scaffold57498__1_contigs__length_14995 LN:14995 skipping SAM header line: @SQ SN:PGA_scaffold57499__1_contigs__length_23438 LN:23438 skipping SAM header line: @SQ SN:PGA_scaffold57500__1_contigs__length_18125 LN:18125 skipping SAM header line: @SQ SN:PGA_scaffold57501__1_contigs__length_11900 LN:11900 skipping SAM header line: @SQ SN:PGA_scaffold57503__1_contigs__length_11057 LN:11057 skipping SAM header line: @SQ SN:PGA_scaffold57504__1_contigs__length_21944 LN:21944 skipping SAM header line: @SQ SN:PGA_scaffold57505__1_contigs__length_14425 LN:14425 skipping SAM header line: @SQ SN:PGA_scaffold57507__1_contigs__length_22182 LN:22182 skipping SAM header line: @SQ SN:PGA_scaffold57508__1_contigs__length_11089 LN:11089 skipping SAM header line: @SQ SN:PGA_scaffold57509__1_contigs__length_19607 LN:19607 skipping SAM header line: @SQ SN:PGA_scaffold57510__1_contigs__length_39178 LN:39178 skipping SAM header line: @SQ SN:PGA_scaffold57512__1_contigs__length_20259 LN:20259 skipping SAM header line: @SQ SN:PGA_scaffold57514__1_contigs__length_11947 LN:11947 skipping SAM header line: @SQ SN:PGA_scaffold57515__1_contigs__length_22624 LN:22624 skipping SAM header line: @SQ SN:PGA_scaffold57518__1_contigs__length_17718 LN:17718 skipping SAM header line: @SQ SN:PGA_scaffold57519__1_contigs__length_22109 LN:22109 skipping SAM header line: @SQ SN:PGA_scaffold57520__1_contigs__length_56780 LN:56780 skipping SAM header line: @SQ SN:PGA_scaffold57524__1_contigs__length_36257 LN:36257 skipping SAM header line: @SQ SN:PGA_scaffold57525__1_contigs__length_25451 LN:25451 skipping SAM header line: @SQ SN:PGA_scaffold57526__1_contigs__length_13423 LN:13423 skipping SAM header line: @SQ SN:PGA_scaffold57527__1_contigs__length_11731 LN:11731 skipping SAM header line: @SQ SN:PGA_scaffold57529__1_contigs__length_33001 LN:33001 skipping SAM header line: @SQ SN:PGA_scaffold57535__1_contigs__length_10871 LN:10871 skipping SAM header line: @SQ SN:PGA_scaffold57536__1_contigs__length_10035 LN:10035 skipping SAM header line: @SQ SN:PGA_scaffold57545__1_contigs__length_15071 LN:15071 skipping SAM header line: @SQ SN:PGA_scaffold57546__1_contigs__length_35410 LN:35410 skipping SAM header line: @SQ SN:PGA_scaffold57547__1_contigs__length_11204 LN:11204 skipping SAM header line: @SQ SN:PGA_scaffold57548__1_contigs__length_15535 LN:15535 skipping SAM header line: @SQ SN:PGA_scaffold57550__1_contigs__length_25127 LN:25127 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57689__1_contigs__length_10102 LN:10102 skipping SAM header line: @SQ SN:PGA_scaffold57695__1_contigs__length_11491 LN:11491 skipping SAM header line: @SQ SN:PGA_scaffold57697__1_contigs__length_11009 LN:11009 skipping SAM header line: @SQ SN:PGA_scaffold57700__1_contigs__length_10015 LN:10015 skipping SAM header line: @SQ SN:PGA_scaffold57705__1_contigs__length_28827 LN:28827 skipping SAM header line: @SQ SN:PGA_scaffold57706__1_contigs__length_40854 LN:40854 skipping SAM header line: @SQ SN:PGA_scaffold57709__1_contigs__length_16996 LN:16996 skipping SAM header line: @SQ SN:PGA_scaffold57710__1_contigs__length_31661 LN:31661 skipping SAM header line: @SQ SN:PGA_scaffold57711__1_contigs__length_39713 LN:39713 skipping SAM header line: @SQ SN:PGA_scaffold57712__1_contigs__length_24059 LN:24059 skipping SAM header line: @SQ SN:PGA_scaffold57714__1_contigs__length_29175 LN:29175 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57758__1_contigs__length_14261 LN:14261 skipping SAM header line: @SQ SN:PGA_scaffold57761__1_contigs__length_13809 LN:13809 skipping SAM header line: @SQ SN:PGA_scaffold57762__1_contigs__length_27902 LN:27902 skipping SAM header line: @SQ SN:PGA_scaffold57773__1_contigs__length_10792 LN:10792 skipping SAM header line: @SQ SN:PGA_scaffold57784__1_contigs__length_13847 LN:13847 skipping SAM header line: @SQ SN:PGA_scaffold57788__1_contigs__length_14483 LN:14483 skipping SAM header line: @SQ SN:PGA_scaffold57800__1_contigs__length_10494 LN:10494 skipping SAM header line: @SQ SN:PGA_scaffold57808__1_contigs__length_17752 LN:17752 skipping SAM header line: @SQ SN:PGA_scaffold57825__1_contigs__length_12368 LN:12368 skipping SAM header line: @SQ SN:PGA_scaffold57828__1_contigs__length_12730 LN:12730 skipping SAM header line: @SQ SN:PGA_scaffold57837__1_contigs__length_11440 LN:11440 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57939__1_contigs__length_19402 LN:19402 skipping SAM header line: @SQ SN:PGA_scaffold57964__1_contigs__length_10844 LN:10844 skipping SAM header line: @SQ SN:PGA_scaffold57971__1_contigs__length_17824 LN:17824 skipping SAM header line: @SQ SN:PGA_scaffold57974__1_contigs__length_13186 LN:13186 skipping SAM header line: @SQ SN:PGA_scaffold57975__1_contigs__length_16686 LN:16686 skipping SAM header line: @SQ SN:PGA_scaffold57988__1_contigs__length_22804 LN:22804 skipping SAM header line: @SQ SN:PGA_scaffold58015__1_contigs__length_17297 LN:17297 skipping SAM header line: @SQ SN:PGA_scaffold58039__1_contigs__length_11638 LN:11638 skipping SAM header line: @SQ SN:PGA_scaffold58041__1_contigs__length_10489 LN:10489 skipping SAM header line: @SQ SN:PGA_scaffold58053__1_contigs__length_21616 LN:21616 skipping SAM header line: @SQ SN:PGA_scaffold58062__1_contigs__length_26971 LN:26971 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold58196__1_contigs__length_14353 LN:14353 skipping SAM header line: @SQ SN:PGA_scaffold58205__1_contigs__length_11295 LN:11295 skipping SAM header line: @SQ SN:PGA_scaffold58207__1_contigs__length_24307 LN:24307 skipping SAM header line: @SQ SN:PGA_scaffold58208__1_contigs__length_12073 LN:12073 skipping SAM header line: @SQ SN:PGA_scaffold58209__1_contigs__length_10640 LN:10640 skipping SAM header line: @SQ SN:PGA_scaffold58210__1_contigs__length_20258 LN:20258 skipping SAM header line: @SQ SN:PGA_scaffold58212__1_contigs__length_21941 LN:21941 skipping SAM header line: @SQ SN:PGA_scaffold58219__1_contigs__length_21717 LN:21717 skipping SAM header line: @SQ SN:PGA_scaffold58220__1_contigs__length_17936 LN:17936 skipping SAM header line: @SQ SN:PGA_scaffold58221__1_contigs__length_14877 LN:14877 skipping SAM header line: @SQ SN:PGA_scaffold58224__1_contigs__length_11970 LN:11970 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold58260__1_contigs__length_12467 LN:12467 skipping SAM header line: @SQ SN:PGA_scaffold58261__1_contigs__length_10609 LN:10609 skipping SAM header line: @SQ SN:PGA_scaffold58264__1_contigs__length_33661 LN:33661 skipping SAM header line: @SQ SN:PGA_scaffold58265__1_contigs__length_14960 LN:14960 skipping SAM header line: @SQ SN:PGA_scaffold58266__1_contigs__length_10850 LN:10850 skipping SAM header line: @SQ SN:PGA_scaffold58270__1_contigs__length_29722 LN:29722 skipping SAM header line: @SQ SN:PGA_scaffold58275__1_contigs__length_20529 LN:20529 skipping SAM header line: @SQ SN:PGA_scaffold58283__1_contigs__length_21704 LN:21704 skipping SAM header line: @SQ SN:PGA_scaffold58284__1_contigs__length_33826 LN:33826 skipping SAM header line: @SQ SN:PGA_scaffold58290__1_contigs__length_11324 LN:11324 skipping SAM header line: @SQ SN:PGA_scaffold58294__1_contigs__length_16400 LN:16400 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold58333__1_contigs__length_13330 LN:13330 skipping SAM header line: @SQ SN:PGA_scaffold58343__1_contigs__length_19353 LN:19353 skipping SAM header line: @SQ SN:PGA_scaffold58345__1_contigs__length_21782 LN:21782 skipping SAM header line: @SQ SN:PGA_scaffold58348__1_contigs__length_12345 LN:12345 skipping SAM header line: @SQ SN:PGA_scaffold58352__1_contigs__length_14446 LN:14446 skipping SAM header line: @SQ SN:PGA_scaffold58353__1_contigs__length_13485 LN:13485 skipping SAM header line: @SQ SN:PGA_scaffold58361__1_contigs__length_52751 LN:52751 skipping SAM header line: @SQ SN:PGA_scaffold58366__1_contigs__length_37326 LN:37326 skipping SAM header line: @SQ SN:PGA_scaffold58370__1_contigs__length_11988 LN:11988 skipping SAM header line: @SQ SN:PGA_scaffold58371__1_contigs__length_12863 LN:12863 skipping SAM header line: @SQ SN:PGA_scaffold58374__1_contigs__length_15700 LN:15700 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold58405__1_contigs__length_25074 LN:25074 skipping SAM header line: @SQ SN:PGA_scaffold58406__1_contigs__length_39981 LN:39981 skipping SAM header line: @SQ SN:PGA_scaffold58408__1_contigs__length_51130 LN:51130 skipping SAM header line: @SQ SN:PGA_scaffold58409__1_contigs__length_29998 LN:29998 skipping SAM header line: @SQ SN:PGA_scaffold58411__1_contigs__length_11196 LN:11196 skipping SAM header line: @SQ SN:PGA_scaffold58413__1_contigs__length_24633 LN:24633 skipping SAM header line: @SQ SN:PGA_scaffold58414__1_contigs__length_31140 LN:31140 skipping SAM header line: @SQ SN:PGA_scaffold58420__1_contigs__length_10267 LN:10267 skipping SAM header line: @SQ SN:PGA_scaffold58423__1_contigs__length_47054 LN:47054 skipping SAM header line: @SQ SN:PGA_scaffold58431__1_contigs__length_30555 LN:30555 skipping SAM header line: @SQ SN:PGA_scaffold58437__1_contigs__length_27914 LN:27914 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold58551__1_contigs__length_10948 LN:10948 skipping SAM header line: @SQ SN:PGA_scaffold58564__1_contigs__length_11817 LN:11817 skipping SAM header line: @SQ SN:PGA_scaffold58572__1_contigs__length_11945 LN:11945 skipping SAM header line: @SQ SN:PGA_scaffold58576__1_contigs__length_10417 LN:10417 skipping SAM header line: @SQ SN:PGA_scaffold58583__1_contigs__length_10407 LN:10407 skipping SAM header line: @SQ SN:PGA_scaffold58588__1_contigs__length_10527 LN:10527 skipping SAM header line: @SQ SN:PGA_scaffold58611__1_contigs__length_10473 LN:10473 skipping SAM header line: @SQ SN:PGA_scaffold58619__1_contigs__length_11883 LN:11883 skipping SAM header line: @SQ SN:PGA_scaffold58637__1_contigs__length_30774 LN:30774 skipping SAM header line: @SQ SN:PGA_scaffold58638__1_contigs__length_36895 LN:36895 skipping SAM header line: @SQ SN:PGA_scaffold58639__1_contigs__length_14728 LN:14728 skipping SAM header line: @SQ SN:PGA_scaffold58640__1_contigs__length_35005 LN:35005 skipping SAM header line: @SQ SN:PGA_scaffold58641__1_contigs__length_27171 LN:27171 skipping SAM header line: @SQ SN:PGA_scaffold58642__1_contigs__length_10571 LN:10571 skipping SAM header line: @SQ SN:PGA_scaffold58649__1_contigs__length_12059 LN:12059 skipping SAM header line: @SQ SN:PGA_scaffold58652__1_contigs__length_10433 LN:10433 skipping SAM header line: @SQ SN:PGA_scaffold58654__1_contigs__length_18671 LN:18671 skipping SAM header line: @SQ SN:PGA_scaffold58655__1_contigs__length_14710 LN:14710 skipping SAM header line: @SQ SN:PGA_scaffold58656__1_contigs__length_13761 LN:13761 skipping SAM header line: @SQ SN:PGA_scaffold58657__1_contigs__length_12082 LN:12082 skipping SAM header line: @SQ SN:PGA_scaffold58658__1_contigs__length_14444 LN:14444 skipping SAM header line: @SQ SN:PGA_scaffold58659__1_contigs__length_14450 LN:14450 skipping SAM header line: @SQ SN:PGA_scaffold58662__1_contigs__length_17100 LN:17100 skipping SAM header line: @SQ SN:PGA_scaffold58665__1_contigs__length_14595 LN:14595 skipping SAM header line: @SQ SN:PGA_scaffold58676__1_contigs__length_42740 LN:42740 skipping SAM header line: @SQ SN:PGA_scaffold58698__1_contigs__length_19120 LN:19120 skipping SAM header line: @SQ SN:PGA_scaffold58700__1_contigs__length_38161 LN:38161 skipping SAM header line: @SQ SN:PGA_scaffold58701__1_contigs__length_17769 LN:17769 skipping SAM header line: @SQ SN:PGA_scaffold58707__1_contigs__length_16127 LN:16127 skipping SAM header line: @SQ SN:PGA_scaffold58712__1_contigs__length_43972 LN:43972 skipping SAM header line: @SQ SN:PGA_scaffold58717__1_contigs__length_19209 LN:19209 skipping SAM header line: @SQ SN:PGA_scaffold58725__1_contigs__length_15733 LN:15733 skipping SAM header line: @SQ SN:PGA_scaffold58727__1_contigs__length_13724 LN:13724 skipping SAM header line: @SQ SN:PGA_scaffold58734__1_contigs__length_11206 LN:11206 skipping SAM header line: @SQ SN:PGA_scaffold58749__1_contigs__length_42553 LN:42553 skipping SAM header line: @SQ SN:PGA_scaffold58762__1_contigs__length_12240 LN:12240 skipping SAM header line: @SQ SN:PGA_scaffold58769__1_contigs__length_10910 LN:10910 skipping SAM header line: @SQ SN:PGA_scaffold58771__1_contigs__length_19212 LN:19212 skipping SAM header line: @SQ SN:PGA_scaffold58773__1_contigs__length_14567 LN:14567 skipping SAM header line: @SQ SN:PGA_scaffold58786__1_contigs__length_13679 LN:13679 skipping SAM header line: @SQ SN:PGA_scaffold58804__1_contigs__length_13173 LN:13173 skipping SAM header line: @SQ SN:PGA_scaffold58816__1_contigs__length_26595 LN:26595 skipping SAM header line: @SQ SN:PGA_scaffold58821__1_contigs__length_16991 LN:16991 skipping SAM header line: @SQ SN:PGA_scaffold58825__1_contigs__length_11005 LN:11005 skipping SAM header line: @SQ SN:PGA_scaffold58827__1_contigs__length_18797 LN:18797 skipping SAM header line: @SQ SN:PGA_scaffold58834__1_contigs__length_12295 LN:12295 skipping SAM header line: @SQ SN:PGA_scaffold58843__1_contigs__length_16654 LN:16654 skipping SAM header line: @SQ SN:PGA_scaffold58849__1_contigs__length_16339 LN:16339 skipping SAM header line: @SQ SN:PGA_scaffold58862__1_contigs__length_18202 LN:18202 skipping SAM header line: @SQ SN:PGA_scaffold58884__1_contigs__length_15815 LN:15815 skipping SAM header line: @SQ SN:PGA_scaffold58903__1_contigs__length_21383 LN:21383 skipping SAM header line: @SQ SN:PGA_scaffold58924__1_contigs__length_28643 LN:28643 skipping SAM header line: @SQ SN:PGA_scaffold58928__1_contigs__length_12021 LN:12021 skipping SAM header line: @SQ SN:PGA_scaffold58954__1_contigs__length_11050 LN:11050 skipping SAM header line: @SQ SN:PGA_scaffold58969__1_contigs__length_10036 LN:10036 skipping SAM header line: @SQ SN:PGA_scaffold58972__1_contigs__length_17376 LN:17376 skipping SAM header line: @SQ SN:PGA_scaffold58973__1_contigs__length_10003 LN:10003 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold59048__1_contigs__length_14906 LN:14906 skipping SAM header line: @SQ SN:PGA_scaffold59049__1_contigs__length_23401 LN:23401 skipping SAM header line: @SQ SN:PGA_scaffold59050__1_contigs__length_12285 LN:12285 skipping SAM header line: @SQ SN:PGA_scaffold59054__1_contigs__length_30586 LN:30586 skipping SAM header line: @SQ SN:PGA_scaffold59055__1_contigs__length_15209 LN:15209 skipping SAM header line: @SQ SN:PGA_scaffold59056__1_contigs__length_33360 LN:33360 skipping SAM header line: @SQ SN:PGA_scaffold59065__1_contigs__length_26269 LN:26269 skipping SAM header line: @SQ SN:PGA_scaffold59071__1_contigs__length_12323 LN:12323 skipping SAM header line: @SQ SN:PGA_scaffold59080__1_contigs__length_10460 LN:10460 skipping SAM header line: @SQ SN:PGA_scaffold59082__1_contigs__length_12243 LN:12243 skipping SAM header line: @SQ SN:PGA_scaffold59093__1_contigs__length_14329 LN:14329 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold59139__1_contigs__length_26973 LN:26973 skipping SAM header line: @SQ SN:PGA_scaffold59140__1_contigs__length_12062 LN:12062 skipping SAM header line: @SQ SN:PGA_scaffold59141__1_contigs__length_17785 LN:17785 skipping SAM header line: @SQ SN:PGA_scaffold59146__1_contigs__length_19446 LN:19446 skipping SAM header line: @SQ SN:PGA_scaffold59148__1_contigs__length_26194 LN:26194 skipping SAM header line: @SQ SN:PGA_scaffold59152__1_contigs__length_14897 LN:14897 skipping SAM header line: @SQ SN:PGA_scaffold59154__1_contigs__length_13197 LN:13197 skipping SAM header line: @SQ SN:PGA_scaffold59155__1_contigs__length_10517 LN:10517 skipping SAM header line: @SQ SN:PGA_scaffold59157__1_contigs__length_16404 LN:16404 skipping SAM header line: @SQ SN:PGA_scaffold59159__1_contigs__length_25531 LN:25531 skipping SAM header line: @SQ SN:PGA_scaffold59160__1_contigs__length_18263 LN:18263 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold59190__1_contigs__length_41883 LN:41883 skipping SAM header line: @SQ SN:PGA_scaffold59192__1_contigs__length_14185 LN:14185 skipping SAM header line: @SQ SN:PGA_scaffold59194__1_contigs__length_17419 LN:17419 skipping SAM header line: @SQ SN:PGA_scaffold59202__1_contigs__length_18368 LN:18368 skipping SAM header line: @SQ SN:PGA_scaffold59203__1_contigs__length_24335 LN:24335 skipping SAM header line: @SQ SN:PGA_scaffold59204__1_contigs__length_27350 LN:27350 skipping SAM header line: @SQ SN:PGA_scaffold59205__1_contigs__length_29285 LN:29285 skipping SAM header line: @SQ SN:PGA_scaffold59236__1_contigs__length_10695 LN:10695 skipping SAM header line: @SQ SN:PGA_scaffold59268__1_contigs__length_11004 LN:11004 skipping SAM header line: @SQ SN:PGA_scaffold59278__1_contigs__length_11047 LN:11047 skipping SAM header line: @SQ SN:PGA_scaffold59288__1_contigs__length_11735 LN:11735 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold59377__1_contigs__length_38396 LN:38396 skipping SAM header line: @SQ SN:PGA_scaffold59378__1_contigs__length_24010 LN:24010 skipping SAM header line: @SQ SN:PGA_scaffold59380__1_contigs__length_10209 LN:10209 skipping SAM header line: @SQ SN:PGA_scaffold59382__1_contigs__length_12335 LN:12335 skipping SAM header line: @SQ SN:PGA_scaffold59386__1_contigs__length_16730 LN:16730 skipping SAM header line: @SQ SN:PGA_scaffold59388__1_contigs__length_56034 LN:56034 skipping SAM header line: @SQ SN:PGA_scaffold59389__1_contigs__length_19492 LN:19492 skipping SAM header line: @SQ SN:PGA_scaffold59390__1_contigs__length_40508 LN:40508 skipping SAM header line: @SQ SN:PGA_scaffold59391__1_contigs__length_12937 LN:12937 skipping SAM header line: @SQ SN:PGA_scaffold59399__1_contigs__length_20282 LN:20282 skipping SAM header line: @SQ SN:PGA_scaffold59400__1_contigs__length_28045 LN:28045 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold59680__1_contigs__length_17030 LN:17030 skipping SAM header line: @SQ SN:PGA_scaffold59686__1_contigs__length_38175 LN:38175 skipping SAM header line: @SQ SN:PGA_scaffold59687__1_contigs__length_34469 LN:34469 skipping SAM header line: @SQ SN:PGA_scaffold59690__1_contigs__length_17996 LN:17996 skipping SAM header line: @SQ SN:PGA_scaffold59695__1_contigs__length_15139 LN:15139 skipping SAM header line: @SQ SN:PGA_scaffold59696__1_contigs__length_18951 LN:18951 skipping SAM header line: @SQ SN:PGA_scaffold59698__1_contigs__length_17500 LN:17500 skipping SAM header line: @SQ SN:PGA_scaffold59700__1_contigs__length_11865 LN:11865 skipping SAM header line: @SQ SN:PGA_scaffold59709__1_contigs__length_10491 LN:10491 skipping SAM header line: @SQ SN:PGA_scaffold59717__1_contigs__length_10354 LN:10354 skipping SAM header line: @SQ SN:PGA_scaffold59720__1_contigs__length_11747 LN:11747 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold59750__1_contigs__length_36894 LN:36894 skipping SAM header line: @SQ SN:PGA_scaffold59760__1_contigs__length_11086 LN:11086 skipping SAM header line: @SQ SN:PGA_scaffold59762__1_contigs__length_15361 LN:15361 skipping SAM header line: @SQ SN:PGA_scaffold59765__1_contigs__length_16266 LN:16266 skipping SAM header line: @SQ SN:PGA_scaffold59766__1_contigs__length_21718 LN:21718 skipping SAM header line: @SQ SN:PGA_scaffold59767__1_contigs__length_22372 LN:22372 skipping SAM header line: @SQ SN:PGA_scaffold59768__1_contigs__length_18591 LN:18591 skipping SAM header line: @SQ SN:PGA_scaffold59779__1_contigs__length_10275 LN:10275 skipping SAM header line: @SQ SN:PGA_scaffold59795__1_contigs__length_11362 LN:11362 skipping SAM header line: @SQ SN:PGA_scaffold59808__1_contigs__length_10120 LN:10120 skipping SAM header line: @SQ SN:PGA_scaffold59815__1_contigs__length_12398 LN:12398 skipping SAM header line: @SQ SN:PGA_scaffold59828__1_contigs__length_10555 LN:10555 skipping SAM header line: @SQ SN:PGA_scaffold59830__1_contigs__length_10417 LN:10417 skipping SAM header line: @SQ SN:PGA_scaffold59847__1_contigs__length_11576 LN:11576 skipping SAM header line: @SQ SN:PGA_scaffold59852__1_contigs__length_10144 LN:10144 skipping SAM header line: @SQ SN:PGA_scaffold59858__1_contigs__length_39712 LN:39712 skipping SAM header line: @SQ SN:PGA_scaffold59861__1_contigs__length_16978 LN:16978 skipping SAM header line: @SQ SN:PGA_scaffold59864__1_contigs__length_17823 LN:17823 skipping SAM header line: @SQ SN:PGA_scaffold59865__1_contigs__length_17043 LN:17043 skipping SAM header line: @SQ SN:PGA_scaffold59872__1_contigs__length_51346 LN:51346 skipping SAM header line: @SQ SN:PGA_scaffold59883__1_contigs__length_14105 LN:14105 skipping SAM header line: @SQ SN:PGA_scaffold59889__1_contigs__length_22375 LN:22375 skipping SAM header line: @SQ SN:PGA_scaffold59900__1_contigs__length_13067 LN:13067 skipping SAM header line: @SQ SN:PGA_scaffold59906__1_contigs__length_11782 LN:11782 skipping SAM header line: @SQ SN:PGA_scaffold59907__1_contigs__length_30865 LN:30865 skipping SAM header line: @SQ SN:PGA_scaffold59908__1_contigs__length_20185 LN:20185 skipping SAM header line: @SQ SN:PGA_scaffold59914__1_contigs__length_21825 LN:21825 skipping SAM header line: @SQ SN:PGA_scaffold59915__1_contigs__length_11504 LN:11504 skipping SAM header line: @SQ SN:PGA_scaffold59917__1_contigs__length_11727 LN:11727 skipping SAM header line: @SQ SN:PGA_scaffold59922__1_contigs__length_27297 LN:27297 skipping SAM header line: @SQ SN:PGA_scaffold59923__1_contigs__length_11967 LN:11967 skipping SAM header line: @SQ SN:PGA_scaffold59925__1_contigs__length_10341 LN:10341 skipping SAM header line: @SQ SN:PGA_scaffold59926__1_contigs__length_19800 LN:19800 skipping SAM header line: @SQ SN:PGA_scaffold59928__1_contigs__length_11066 LN:11066 skipping SAM header line: @SQ SN:PGA_scaffold59933__1_contigs__length_43116 LN:43116 skipping SAM header line: @SQ SN:PGA_scaffold59934__1_contigs__length_15445 LN:15445 skipping SAM header line: @SQ SN:PGA_scaffold59937__1_contigs__length_14063 LN:14063 skipping SAM header line: @SQ SN:PGA_scaffold59939__1_contigs__length_14879 LN:14879 skipping SAM header line: @SQ SN:PGA_scaffold59940__1_contigs__length_12474 LN:12474 skipping SAM header line: @SQ SN:PGA_scaffold59942__1_contigs__length_17865 LN:17865 skipping SAM header line: @SQ SN:PGA_scaffold59943__1_contigs__length_33685 LN:33685 skipping SAM header line: @SQ SN:PGA_scaffold59959__1_contigs__length_16097 LN:16097 skipping SAM header line: @SQ SN:PGA_scaffold59962__1_contigs__length_19613 LN:19613 skipping SAM header line: @SQ SN:PGA_scaffold59967__1_contigs__length_25068 LN:25068 skipping SAM header line: @SQ SN:PGA_scaffold59969__1_contigs__length_10577 LN:10577 skipping SAM header line: @SQ SN:PGA_scaffold59971__1_contigs__length_10415 LN:10415 skipping SAM header line: @SQ SN:PGA_scaffold59992__1_contigs__length_30411 LN:30411 skipping SAM header line: @SQ SN:PGA_scaffold59994__1_contigs__length_19492 LN:19492 skipping SAM header line: @SQ SN:PGA_scaffold59996__1_contigs__length_27417 LN:27417 skipping SAM header line: @SQ SN:PGA_scaffold60003__1_contigs__length_18727 LN:18727 skipping SAM header line: @SQ SN:PGA_scaffold60009__1_contigs__length_34709 LN:34709 skipping SAM header line: @SQ SN:PGA_scaffold60011__1_contigs__length_12511 LN:12511 skipping SAM header line: @SQ SN:PGA_scaffold60029__1_contigs__length_19878 LN:19878 skipping SAM header line: @SQ SN:PGA_scaffold60033__1_contigs__length_13029 LN:13029 skipping SAM header line: @SQ SN:PGA_scaffold60084__1_contigs__length_34630 LN:34630 skipping SAM header line: @SQ SN:PGA_scaffold60087__1_contigs__length_14181 LN:14181 skipping SAM header line: @SQ SN:PGA_scaffold60092__1_contigs__length_22393 LN:22393 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold60171__1_contigs__length_19988 LN:19988 skipping SAM header line: @SQ SN:PGA_scaffold60178__1_contigs__length_12542 LN:12542 skipping SAM header line: @SQ SN:PGA_scaffold60180__1_contigs__length_14198 LN:14198 skipping SAM header line: @SQ SN:PGA_scaffold60181__1_contigs__length_17215 LN:17215 skipping SAM header line: @SQ SN:PGA_scaffold60183__1_contigs__length_25375 LN:25375 skipping SAM header line: @SQ SN:PGA_scaffold60186__1_contigs__length_10045 LN:10045 skipping SAM header line: @SQ SN:PGA_scaffold60187__1_contigs__length_21023 LN:21023 skipping SAM header line: @SQ SN:PGA_scaffold60189__1_contigs__length_11852 LN:11852 skipping SAM header line: @SQ SN:PGA_scaffold60194__1_contigs__length_20986 LN:20986 skipping SAM header line: @SQ SN:PGA_scaffold60202__1_contigs__length_13901 LN:13901 skipping SAM header line: @SQ SN:PGA_scaffold60206__1_contigs__length_17877 LN:17877 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold60258__1_contigs__length_12051 LN:12051 skipping SAM header line: @SQ SN:PGA_scaffold60260__1_contigs__length_18114 LN:18114 skipping SAM header line: @SQ SN:PGA_scaffold60264__1_contigs__length_20452 LN:20452 skipping SAM header line: @SQ SN:PGA_scaffold60271__1_contigs__length_33335 LN:33335 skipping SAM header line: @SQ SN:PGA_scaffold60276__1_contigs__length_24243 LN:24243 skipping SAM header line: @SQ SN:PGA_scaffold60277__1_contigs__length_22204 LN:22204 skipping SAM header line: @SQ SN:PGA_scaffold60278__1_contigs__length_10293 LN:10293 skipping SAM header line: @SQ SN:PGA_scaffold60279__1_contigs__length_36536 LN:36536 skipping SAM header line: @SQ SN:PGA_scaffold60280__1_contigs__length_20166 LN:20166 skipping SAM header line: @SQ SN:PGA_scaffold60281__1_contigs__length_25250 LN:25250 skipping SAM header line: @SQ SN:PGA_scaffold60282__1_contigs__length_21674 LN:21674 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold60303__1_contigs__length_13872 LN:13872 skipping SAM header line: @SQ SN:PGA_scaffold60316__1_contigs__length_15238 LN:15238 skipping SAM header line: @SQ SN:PGA_scaffold60318__1_contigs__length_36247 LN:36247 skipping SAM header line: @SQ SN:PGA_scaffold60319__1_contigs__length_11321 LN:11321 skipping SAM header line: @SQ SN:PGA_scaffold60320__1_contigs__length_15422 LN:15422 skipping SAM header line: @SQ SN:PGA_scaffold60327__1_contigs__length_11877 LN:11877 skipping SAM header line: @SQ SN:PGA_scaffold60330__1_contigs__length_10186 LN:10186 skipping SAM header line: @SQ SN:PGA_scaffold60332__1_contigs__length_11645 LN:11645 skipping SAM header line: @SQ SN:PGA_scaffold60357__1_contigs__length_10917 LN:10917 skipping SAM header line: @SQ SN:PGA_scaffold60366__1_contigs__length_15188 LN:15188 skipping SAM header line: @SQ SN:PGA_scaffold60387__1_contigs__length_11220 LN:11220 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold60559__1_contigs__length_27250 LN:27250 skipping SAM header line: @SQ SN:PGA_scaffold60574__1_contigs__length_10162 LN:10162 skipping SAM header line: @SQ SN:PGA_scaffold60583__1_contigs__length_10153 LN:10153 skipping SAM header line: @SQ SN:PGA_scaffold60591__1_contigs__length_10780 LN:10780 skipping SAM header line: @SQ SN:PGA_scaffold60600__1_contigs__length_11201 LN:11201 skipping SAM header line: @SQ SN:PGA_scaffold60606__1_contigs__length_11903 LN:11903 skipping SAM header line: @SQ SN:PGA_scaffold60611__1_contigs__length_14081 LN:14081 skipping SAM header line: @SQ SN:PGA_scaffold60615__1_contigs__length_40286 LN:40286 skipping SAM header line: @SQ SN:PGA_scaffold60625__1_contigs__length_10226 LN:10226 skipping SAM header line: @SQ SN:PGA_scaffold60639__1_contigs__length_11194 LN:11194 skipping SAM header line: @SQ SN:PGA_scaffold60644__1_contigs__length_21631 LN:21631 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold60678__1_contigs__length_15728 LN:15728 skipping SAM header line: @SQ SN:PGA_scaffold60679__1_contigs__length_15640 LN:15640 skipping SAM header line: @SQ SN:PGA_scaffold60680__1_contigs__length_15006 LN:15006 skipping SAM header line: @SQ SN:PGA_scaffold60681__1_contigs__length_10186 LN:10186 skipping SAM header line: @SQ SN:PGA_scaffold60689__1_contigs__length_14662 LN:14662 skipping SAM header line: @SQ SN:PGA_scaffold60690__1_contigs__length_10130 LN:10130 skipping SAM header line: @SQ SN:PGA_scaffold60696__1_contigs__length_13166 LN:13166 skipping SAM header line: @SQ SN:PGA_scaffold60697__1_contigs__length_22156 LN:22156 skipping SAM header line: @SQ SN:PGA_scaffold60699__1_contigs__length_33841 LN:33841 skipping SAM header line: @SQ SN:PGA_scaffold60700__1_contigs__length_20940 LN:20940 skipping SAM header line: @SQ SN:PGA_scaffold60701__1_contigs__length_53170 LN:53170 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold60843__1_contigs__length_16963 LN:16963 skipping SAM header line: @SQ SN:PGA_scaffold60844__1_contigs__length_38798 LN:38798 skipping SAM header line: @SQ SN:PGA_scaffold60845__1_contigs__length_17994 LN:17994 skipping SAM header line: @SQ SN:PGA_scaffold60846__1_contigs__length_40793 LN:40793 skipping SAM header line: @SQ SN:PGA_scaffold60847__1_contigs__length_13840 LN:13840 skipping SAM header line: @SQ SN:PGA_scaffold60848__1_contigs__length_14764 LN:14764 skipping SAM header line: @SQ SN:PGA_scaffold60850__1_contigs__length_19855 LN:19855 skipping SAM header line: @SQ SN:PGA_scaffold60851__1_contigs__length_18063 LN:18063 skipping SAM header line: @SQ SN:PGA_scaffold60853__1_contigs__length_14592 LN:14592 skipping SAM header line: @SQ SN:PGA_scaffold60866__1_contigs__length_10864 LN:10864 skipping SAM header line: @SQ SN:PGA_scaffold60872__1_contigs__length_12336 LN:12336 skipping SAM header line: @SQ SN:PGA_scaffold60878__1_contigs__length_14356 LN:14356 skipping SAM header line: @SQ SN:PGA_scaffold60879__1_contigs__length_12230 LN:12230 skipping SAM header line: @SQ SN:PGA_scaffold60880__1_contigs__length_17072 LN:17072 skipping SAM header line: @SQ SN:PGA_scaffold60893__1_contigs__length_17336 LN:17336 skipping SAM header line: @SQ SN:PGA_scaffold60895__1_contigs__length_13421 LN:13421 skipping SAM header line: @SQ SN:PGA_scaffold60901__1_contigs__length_14472 LN:14472 skipping SAM header line: @SQ SN:PGA_scaffold60908__1_contigs__length_14464 LN:14464 skipping SAM header line: @SQ SN:PGA_scaffold60913__1_contigs__length_19011 LN:19011 skipping SAM header line: @SQ SN:PGA_scaffold60920__1_contigs__length_17798 LN:17798 skipping SAM header line: @SQ SN:PGA_scaffold60926__1_contigs__length_14755 LN:14755 skipping SAM header line: @SQ SN:PGA_scaffold60927__1_contigs__length_26469 LN:26469 skipping SAM header line: @SQ SN:PGA_scaffold60929__1_contigs__length_11479 LN:11479 skipping SAM header line: @SQ SN:PGA_scaffold60934__1_contigs__length_23189 LN:23189 skipping SAM header line: @SQ SN:PGA_scaffold60942__1_contigs__length_10246 LN:10246 skipping SAM header line: @SQ SN:PGA_scaffold60945__1_contigs__length_20685 LN:20685 skipping SAM header line: @SQ SN:PGA_scaffold60946__1_contigs__length_19950 LN:19950 skipping SAM header line: @SQ SN:PGA_scaffold60947__1_contigs__length_15321 LN:15321 skipping SAM header line: @SQ SN:PGA_scaffold60964__1_contigs__length_26620 LN:26620 skipping SAM header line: @SQ SN:PGA_scaffold60968__1_contigs__length_14767 LN:14767 skipping SAM header line: @SQ SN:PGA_scaffold60971__1_contigs__length_10056 LN:10056 skipping SAM header line: @SQ SN:PGA_scaffold60972__1_contigs__length_13274 LN:13274 skipping SAM header line: @SQ SN:PGA_scaffold60985__1_contigs__length_43490 LN:43490 skipping SAM header line: @SQ SN:PGA_scaffold60986__1_contigs__length_17979 LN:17979 skipping SAM header line: @SQ SN:PGA_scaffold60995__1_contigs__length_26877 LN:26877 skipping SAM header line: @SQ SN:PGA_scaffold61002__1_contigs__length_13172 LN:13172 skipping SAM header line: @SQ SN:PGA_scaffold61010__1_contigs__length_18575 LN:18575 skipping SAM header line: @SQ SN:PGA_scaffold61012__1_contigs__length_15695 LN:15695 skipping SAM header line: @SQ SN:PGA_scaffold61013__1_contigs__length_40757 LN:40757 skipping SAM header line: @SQ SN:PGA_scaffold61019__1_contigs__length_24095 LN:24095 skipping SAM header line: @SQ SN:PGA_scaffold61023__1_contigs__length_15307 LN:15307 skipping SAM header line: @SQ SN:PGA_scaffold61026__1_contigs__length_13661 LN:13661 skipping SAM header line: @SQ SN:PGA_scaffold61029__1_contigs__length_26848 LN:26848 skipping SAM header line: @SQ SN:PGA_scaffold61030__1_contigs__length_26545 LN:26545 skipping SAM header line: @SQ SN:PGA_scaffold61031__1_contigs__length_14584 LN:14584 skipping SAM header line: @SQ SN:PGA_scaffold61032__1_contigs__length_18497 LN:18497 skipping SAM header line: @SQ SN:PGA_scaffold61033__1_contigs__length_10121 LN:10121 skipping SAM header line: @SQ SN:PGA_scaffold61037__1_contigs__length_31360 LN:31360 skipping SAM header line: @SQ SN:PGA_scaffold61040__1_contigs__length_32690 LN:32690 skipping SAM header line: @SQ SN:PGA_scaffold61046__1_contigs__length_41502 LN:41502 skipping SAM header line: @SQ SN:PGA_scaffold61048__1_contigs__length_13229 LN:13229 skipping SAM header line: @SQ SN:PGA_scaffold61050__1_contigs__length_19872 LN:19872 skipping SAM header line: @SQ SN:PGA_scaffold61055__1_contigs__length_14140 LN:14140 skipping SAM header line: @SQ SN:PGA_scaffold61063__1_contigs__length_47605 LN:47605 skipping SAM header line: @SQ SN:PGA_scaffold61065__1_contigs__length_26780 LN:26780 skipping SAM header line: @SQ SN:PGA_scaffold61072__1_contigs__length_33361 LN:33361 skipping SAM header line: @SQ SN:PGA_scaffold61078__1_contigs__length_21963 LN:21963 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold61126__1_contigs__length_11362 LN:11362 skipping SAM header line: @SQ SN:PGA_scaffold61128__1_contigs__length_10414 LN:10414 skipping SAM header line: @SQ SN:PGA_scaffold61137__1_contigs__length_10225 LN:10225 skipping SAM header line: @SQ SN:PGA_scaffold61143__1_contigs__length_10624 LN:10624 skipping SAM header line: @SQ SN:PGA_scaffold61158__1_contigs__length_12924 LN:12924 skipping SAM header line: @SQ SN:PGA_scaffold61159__1_contigs__length_23403 LN:23403 skipping SAM header line: @SQ SN:PGA_scaffold61161__1_contigs__length_13046 LN:13046 skipping SAM header line: @SQ SN:PGA_scaffold61165__1_contigs__length_15573 LN:15573 skipping SAM header line: @SQ SN:PGA_scaffold61167__1_contigs__length_17637 LN:17637 skipping SAM header line: @SQ SN:PGA_scaffold61168__1_contigs__length_30806 LN:30806 skipping SAM header line: @SQ SN:PGA_scaffold61169__1_contigs__length_14018 LN:14018 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold61209__1_contigs__length_11028 LN:11028 skipping SAM header line: @SQ SN:PGA_scaffold61219__1_contigs__length_18484 LN:18484 skipping SAM header line: @SQ SN:PGA_scaffold61222__1_contigs__length_27829 LN:27829 skipping SAM header line: @SQ SN:PGA_scaffold61229__1_contigs__length_11878 LN:11878 skipping SAM header line: @SQ SN:PGA_scaffold61237__1_contigs__length_10216 LN:10216 skipping SAM header line: @SQ SN:PGA_scaffold61242__1_contigs__length_43427 LN:43427 skipping SAM header line: @SQ SN:PGA_scaffold61250__1_contigs__length_11090 LN:11090 skipping SAM header line: @SQ SN:PGA_scaffold61267__1_contigs__length_17957 LN:17957 skipping SAM header line: @SQ SN:PGA_scaffold61269__1_contigs__length_19626 LN:19626 skipping SAM header line: @SQ SN:PGA_scaffold61273__1_contigs__length_40703 LN:40703 skipping SAM header line: @SQ SN:PGA_scaffold61275__1_contigs__length_17094 LN:17094 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold61330__1_contigs__length_18243 LN:18243 skipping SAM header line: @SQ SN:PGA_scaffold61333__1_contigs__length_20588 LN:20588 skipping SAM header line: @SQ SN:PGA_scaffold61335__1_contigs__length_32633 LN:32633 skipping SAM header line: @SQ SN:PGA_scaffold61337__1_contigs__length_43505 LN:43505 skipping SAM header line: @SQ SN:PGA_scaffold61342__1_contigs__length_12092 LN:12092 skipping SAM header line: @SQ SN:PGA_scaffold61343__1_contigs__length_35738 LN:35738 skipping SAM header line: @SQ SN:PGA_scaffold61345__1_contigs__length_15593 LN:15593 skipping SAM header line: @SQ SN:PGA_scaffold61358__1_contigs__length_15995 LN:15995 skipping SAM header line: @SQ SN:PGA_scaffold61363__1_contigs__length_43856 LN:43856 skipping SAM header line: @SQ SN:PGA_scaffold61364__1_contigs__length_58674 LN:58674 skipping SAM header line: @SQ SN:PGA_scaffold61367__1_contigs__length_22235 LN:22235 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold61593__1_contigs__length_12227 LN:12227 skipping SAM header line: @SQ SN:PGA_scaffold61597__1_contigs__length_16686 LN:16686 skipping SAM header line: @SQ SN:PGA_scaffold61599__1_contigs__length_15594 LN:15594 skipping SAM header line: @SQ SN:PGA_scaffold61600__1_contigs__length_13886 LN:13886 skipping SAM header line: @SQ SN:PGA_scaffold61601__1_contigs__length_22025 LN:22025 skipping SAM header line: @SQ SN:PGA_scaffold61603__1_contigs__length_11385 LN:11385 skipping SAM header line: @SQ SN:PGA_scaffold61613__1_contigs__length_25314 LN:25314 skipping SAM header line: @SQ SN:PGA_scaffold61614__1_contigs__length_28466 LN:28466 skipping SAM header line: @SQ SN:PGA_scaffold61615__1_contigs__length_40934 LN:40934 skipping SAM header line: @SQ SN:PGA_scaffold61616__1_contigs__length_20028 LN:20028 skipping SAM header line: @SQ SN:PGA_scaffold61618__1_contigs__length_16679 LN:16679 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold61777__1_contigs__length_45224 LN:45224 skipping SAM header line: @SQ SN:PGA_scaffold61779__1_contigs__length_14498 LN:14498 skipping SAM header line: @SQ SN:PGA_scaffold61809__1_contigs__length_11151 LN:11151 skipping SAM header line: @SQ SN:PGA_scaffold61814__1_contigs__length_10475 LN:10475 skipping SAM header line: @SQ SN:PGA_scaffold61825__1_contigs__length_21524 LN:21524 skipping SAM header line: @SQ SN:PGA_scaffold61827__1_contigs__length_14841 LN:14841 skipping SAM header line: @SQ SN:PGA_scaffold61830__1_contigs__length_13700 LN:13700 skipping SAM header line: @SQ SN:PGA_scaffold61831__1_contigs__length_16703 LN:16703 skipping SAM header line: @SQ SN:PGA_scaffold61833__1_contigs__length_15728 LN:15728 skipping SAM header line: @SQ SN:PGA_scaffold61834__1_contigs__length_10213 LN:10213 skipping SAM header line: @SQ SN:PGA_scaffold61840__1_contigs__length_33628 LN:33628 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold61875__1_contigs__length_14118 LN:14118 skipping SAM header line: @SQ SN:PGA_scaffold61877__1_contigs__length_17202 LN:17202 skipping SAM header line: @SQ SN:PGA_scaffold61878__1_contigs__length_24609 LN:24609 skipping SAM header line: @SQ SN:PGA_scaffold61879__1_contigs__length_44422 LN:44422 skipping SAM header line: @SQ SN:PGA_scaffold61884__1_contigs__length_46735 LN:46735 skipping SAM header line: @SQ SN:PGA_scaffold61886__1_contigs__length_24165 LN:24165 skipping SAM header line: @SQ SN:PGA_scaffold61887__1_contigs__length_10778 LN:10778 skipping SAM header line: @SQ SN:PGA_scaffold61888__1_contigs__length_43188 LN:43188 skipping SAM header line: @SQ SN:PGA_scaffold61891__1_contigs__length_16402 LN:16402 skipping SAM header line: @SQ SN:PGA_scaffold61893__1_contigs__length_16586 LN:16586 skipping SAM header line: @SQ SN:PGA_scaffold61895__1_contigs__length_10754 LN:10754 skipping SAM header line: @SQ SN:PGA_scaffold61897__1_contigs__length_41371 LN:41371 skipping SAM header line: @SQ SN:PGA_scaffold61910__1_contigs__length_13612 LN:13612 skipping SAM header line: @SQ SN:PGA_scaffold61912__1_contigs__length_10441 LN:10441 skipping SAM header line: @SQ SN:PGA_scaffold61940__1_contigs__length_11618 LN:11618 skipping SAM header line: @SQ SN:PGA_scaffold61948__1_contigs__length_10378 LN:10378 skipping SAM header line: @SQ SN:PGA_scaffold61952__1_contigs__length_11736 LN:11736 skipping SAM header line: @SQ SN:PGA_scaffold61954__1_contigs__length_15741 LN:15741 skipping SAM header line: @SQ SN:PGA_scaffold61956__1_contigs__length_22179 LN:22179 skipping SAM header line: @SQ SN:PGA_scaffold61959__1_contigs__length_10970 LN:10970 skipping SAM header line: @SQ SN:PGA_scaffold61962__1_contigs__length_14889 LN:14889 skipping SAM header line: @SQ SN:PGA_scaffold61972__1_contigs__length_12779 LN:12779 skipping SAM header line: @SQ SN:PGA_scaffold61974__1_contigs__length_20946 LN:20946 skipping SAM header line: @SQ SN:PGA_scaffold61976__1_contigs__length_26957 LN:26957 skipping SAM header line: @SQ SN:PGA_scaffold61980__1_contigs__length_18355 LN:18355 skipping SAM header line: @SQ SN:PGA_scaffold61981__1_contigs__length_19264 LN:19264 skipping SAM header line: @SQ SN:PGA_scaffold61982__1_contigs__length_37118 LN:37118 skipping SAM header line: @SQ SN:PGA_scaffold61983__1_contigs__length_11660 LN:11660 skipping SAM header line: @SQ SN:PGA_scaffold61989__1_contigs__length_13086 LN:13086 skipping SAM header line: @SQ SN:PGA_scaffold61991__1_contigs__length_11512 LN:11512 skipping SAM header line: @SQ SN:PGA_scaffold62005__1_contigs__length_14278 LN:14278 skipping SAM header line: @SQ SN:PGA_scaffold62007__1_contigs__length_16772 LN:16772 skipping SAM header line: @SQ SN:PGA_scaffold62009__1_contigs__length_17596 LN:17596 skipping SAM header line: @SQ SN:PGA_scaffold62015__1_contigs__length_17484 LN:17484 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold62061__1_contigs__length_18569 LN:18569 skipping SAM header line: @SQ SN:PGA_scaffold62066__1_contigs__length_17050 LN:17050 skipping SAM header line: @SQ SN:PGA_scaffold62070__1_contigs__length_24304 LN:24304 skipping SAM header line: @SQ SN:PGA_scaffold62072__1_contigs__length_12550 LN:12550 skipping SAM header line: @SQ SN:PGA_scaffold62080__1_contigs__length_17827 LN:17827 skipping SAM header line: @SQ SN:PGA_scaffold62084__1_contigs__length_23778 LN:23778 skipping SAM header line: @SQ SN:PGA_scaffold62086__1_contigs__length_10595 LN:10595 skipping SAM header line: @SQ SN:PGA_scaffold62098__1_contigs__length_77920 LN:77920 skipping SAM header line: @SQ SN:PGA_scaffold62107__1_contigs__length_13183 LN:13183 skipping SAM header line: @SQ SN:PGA_scaffold62115__1_contigs__length_12248 LN:12248 skipping SAM header line: @SQ SN:PGA_scaffold62119__1_contigs__length_12866 LN:12866 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold62168__1_contigs__length_43227 LN:43227 skipping SAM header line: @SQ SN:PGA_scaffold62169__1_contigs__length_24383 LN:24383 skipping SAM header line: @SQ SN:PGA_scaffold62170__1_contigs__length_20501 LN:20501 skipping SAM header line: @SQ SN:PGA_scaffold62171__1_contigs__length_12083 LN:12083 skipping SAM header line: @SQ SN:PGA_scaffold62178__1_contigs__length_14225 LN:14225 skipping SAM header line: @SQ SN:PGA_scaffold62180__1_contigs__length_13792 LN:13792 skipping SAM header line: @SQ SN:PGA_scaffold62181__1_contigs__length_10952 LN:10952 skipping SAM header line: @SQ SN:PGA_scaffold62182__1_contigs__length_17897 LN:17897 skipping SAM header line: @SQ SN:PGA_scaffold62186__1_contigs__length_43446 LN:43446 skipping SAM header line: @SQ SN:PGA_scaffold62192__1_contigs__length_56278 LN:56278 skipping SAM header line: @SQ SN:PGA_scaffold62193__1_contigs__length_13322 LN:13322 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold62238__1_contigs__length_10938 LN:10938 skipping SAM header line: @SQ SN:PGA_scaffold62259__1_contigs__length_10611 LN:10611 skipping SAM header line: @SQ SN:PGA_scaffold62261__1_contigs__length_11645 LN:11645 skipping SAM header line: @SQ SN:PGA_scaffold62267__1_contigs__length_12194 LN:12194 skipping SAM header line: @SQ SN:PGA_scaffold62269__1_contigs__length_10133 LN:10133 skipping SAM header line: @SQ SN:PGA_scaffold62273__1_contigs__length_11811 LN:11811 skipping SAM header line: @SQ SN:PGA_scaffold62275__1_contigs__length_13611 LN:13611 skipping SAM header line: @SQ SN:PGA_scaffold62285__1_contigs__length_28484 LN:28484 skipping SAM header line: @SQ SN:PGA_scaffold62292__1_contigs__length_27758 LN:27758 skipping SAM header line: @SQ SN:PGA_scaffold62296__1_contigs__length_27651 LN:27651 skipping SAM header line: @SQ SN:PGA_scaffold62308__1_contigs__length_14290 LN:14290 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold62565__1_contigs__length_13818 LN:13818 skipping SAM header line: @SQ SN:PGA_scaffold62567__1_contigs__length_15048 LN:15048 skipping SAM header line: @SQ SN:PGA_scaffold62571__1_contigs__length_12436 LN:12436 skipping SAM header line: @SQ SN:PGA_scaffold62575__1_contigs__length_12321 LN:12321 skipping SAM header line: @SQ SN:PGA_scaffold62576__1_contigs__length_23775 LN:23775 skipping SAM header line: @SQ SN:PGA_scaffold62585__1_contigs__length_20700 LN:20700 skipping SAM header line: @SQ SN:PGA_scaffold62587__1_contigs__length_10080 LN:10080 skipping SAM header line: @SQ SN:PGA_scaffold62591__1_contigs__length_64464 LN:64464 skipping SAM header line: @SQ SN:PGA_scaffold62598__1_contigs__length_25430 LN:25430 skipping SAM header line: @SQ SN:PGA_scaffold62601__1_contigs__length_36053 LN:36053 skipping SAM header line: @SQ SN:PGA_scaffold62602__1_contigs__length_30153 LN:30153 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold62660__1_contigs__length_21408 LN:21408 skipping SAM header line: @SQ SN:PGA_scaffold62661__1_contigs__length_34648 LN:34648 skipping SAM header line: @SQ SN:PGA_scaffold62662__1_contigs__length_14490 LN:14490 skipping SAM header line: @SQ SN:PGA_scaffold62663__1_contigs__length_14864 LN:14864 skipping SAM header line: @SQ SN:PGA_scaffold62668__1_contigs__length_13819 LN:13819 skipping SAM header line: @SQ SN:PGA_scaffold62675__1_contigs__length_23736 LN:23736 skipping SAM header line: @SQ SN:PGA_scaffold62678__1_contigs__length_13219 LN:13219 skipping SAM header line: @SQ SN:PGA_scaffold62680__1_contigs__length_13078 LN:13078 skipping SAM header line: @SQ SN:PGA_scaffold62683__1_contigs__length_16710 LN:16710 skipping SAM header line: @SQ SN:PGA_scaffold62687__1_contigs__length_56019 LN:56019 skipping SAM header line: @SQ SN:PGA_scaffold62693__1_contigs__length_10288 LN:10288 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold62792__1_contigs__length_10530 LN:10530 skipping SAM header line: @SQ SN:PGA_scaffold62795__1_contigs__length_15858 LN:15858 skipping SAM header line: @SQ SN:PGA_scaffold62797__1_contigs__length_16758 LN:16758 skipping SAM header line: @SQ SN:PGA_scaffold62804__1_contigs__length_21354 LN:21354 skipping SAM header line: @SQ SN:PGA_scaffold62806__1_contigs__length_19233 LN:19233 skipping SAM header line: @SQ SN:PGA_scaffold62819__1_contigs__length_11931 LN:11931 skipping SAM header line: @SQ SN:PGA_scaffold62822__1_contigs__length_18706 LN:18706 skipping SAM header line: @SQ SN:PGA_scaffold62824__1_contigs__length_13383 LN:13383 skipping SAM header line: @SQ SN:PGA_scaffold62832__1_contigs__length_11812 LN:11812 skipping SAM header line: @SQ SN:PGA_scaffold62839__1_contigs__length_13069 LN:13069 skipping SAM header line: @SQ SN:PGA_scaffold62841__1_contigs__length_19705 LN:19705 skipping SAM header line: @SQ SN:PGA_scaffold62843__1_contigs__length_15934 LN:15934 skipping SAM header line: @SQ SN:PGA_scaffold62849__1_contigs__length_10132 LN:10132 skipping SAM header line: @SQ SN:PGA_scaffold62851__1_contigs__length_13887 LN:13887 skipping SAM header line: @SQ SN:PGA_scaffold62854__1_contigs__length_47148 LN:47148 skipping SAM header line: @SQ SN:PGA_scaffold62857__1_contigs__length_13654 LN:13654 skipping SAM header line: @SQ SN:PGA_scaffold62862__1_contigs__length_31728 LN:31728 skipping SAM header line: @SQ SN:PGA_scaffold62864__1_contigs__length_13569 LN:13569 skipping SAM header line: @SQ SN:PGA_scaffold62865__1_contigs__length_39731 LN:39731 skipping SAM header line: @SQ SN:PGA_scaffold62866__1_contigs__length_22458 LN:22458 skipping SAM header line: @SQ SN:PGA_scaffold62868__1_contigs__length_10269 LN:10269 skipping SAM header line: @SQ SN:PGA_scaffold62869__1_contigs__length_16129 LN:16129 skipping SAM header line: @SQ SN:PGA_scaffold62872__1_contigs__length_11267 LN:11267 skipping SAM header line: @SQ SN:PGA_scaffold62881__1_contigs__length_12732 LN:12732 skipping SAM header line: @SQ SN:PGA_scaffold62885__1_contigs__length_16916 LN:16916 skipping SAM header line: @SQ SN:PGA_scaffold62886__1_contigs__length_13139 LN:13139 skipping SAM header line: @SQ SN:PGA_scaffold62888__1_contigs__length_54043 LN:54043 skipping SAM header line: @SQ SN:PGA_scaffold62889__1_contigs__length_48322 LN:48322 skipping SAM header line: @SQ SN:PGA_scaffold62893__1_contigs__length_35424 LN:35424 skipping SAM header line: @SQ SN:PGA_scaffold62898__1_contigs__length_44677 LN:44677 skipping SAM header line: @SQ SN:PGA_scaffold62899__1_contigs__length_48738 LN:48738 skipping SAM header line: @SQ SN:PGA_scaffold62904__1_contigs__length_26307 LN:26307 skipping SAM header line: @SQ SN:PGA_scaffold62907__1_contigs__length_31183 LN:31183 skipping SAM header line: @SQ SN:PGA_scaffold62908__1_contigs__length_19901 LN:19901 skipping SAM header line: @SQ SN:PGA_scaffold62909__1_contigs__length_11638 LN:11638 skipping SAM header line: @SQ SN:PGA_scaffold62910__1_contigs__length_11627 LN:11627 skipping SAM header line: @SQ SN:PGA_scaffold62912__1_contigs__length_44717 LN:44717 skipping SAM header line: @SQ SN:PGA_scaffold62914__1_contigs__length_47643 LN:47643 skipping SAM header line: @SQ SN:PGA_scaffold62917__1_contigs__length_34646 LN:34646 skipping SAM header line: @SQ SN:PGA_scaffold62920__1_contigs__length_32719 LN:32719 skipping SAM header line: @SQ SN:PGA_scaffold62951__1_contigs__length_11976 LN:11976 skipping SAM header line: @SQ SN:PGA_scaffold62960__1_contigs__length_12669 LN:12669 skipping SAM header line: @SQ SN:PGA_scaffold62961__1_contigs__length_24343 LN:24343 skipping SAM header line: @SQ SN:PGA_scaffold62965__1_contigs__length_46983 LN:46983 skipping SAM header line: @SQ SN:PGA_scaffold62974__1_contigs__length_42527 LN:42527 skipping SAM header line: @SQ SN:PGA_scaffold62978__1_contigs__length_18352 LN:18352 skipping SAM header line: @SQ SN:PGA_scaffold62982__1_contigs__length_51892 LN:51892 skipping SAM header line: @SQ SN:PGA_scaffold62990__1_contigs__length_12685 LN:12685 skipping SAM header line: @SQ SN:PGA_scaffold62992__1_contigs__length_17314 LN:17314 skipping SAM header line: @SQ SN:PGA_scaffold63002__1_contigs__length_10999 LN:10999 skipping SAM header line: @SQ SN:PGA_scaffold63008__1_contigs__length_40245 LN:40245 skipping SAM header line: @SQ SN:PGA_scaffold63010__1_contigs__length_11917 LN:11917 skipping SAM header line: @SQ SN:PGA_scaffold63018__1_contigs__length_15427 LN:15427 skipping SAM header line: @SQ SN:PGA_scaffold63022__1_contigs__length_31832 LN:31832 skipping SAM header line: @SQ SN:PGA_scaffold63029__1_contigs__length_17686 LN:17686 skipping SAM header line: @SQ SN:PGA_scaffold63033__1_contigs__length_64137 LN:64137 skipping SAM header line: @SQ SN:PGA_scaffold63034__1_contigs__length_13321 LN:13321 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold63076__1_contigs__length_65566 LN:65566 skipping SAM header line: @SQ SN:PGA_scaffold63085__1_contigs__length_46291 LN:46291 skipping SAM header line: @SQ SN:PGA_scaffold63090__1_contigs__length_43963 LN:43963 skipping SAM header line: @SQ SN:PGA_scaffold63100__1_contigs__length_25121 LN:25121 skipping SAM header line: @SQ SN:PGA_scaffold63101__1_contigs__length_45043 LN:45043 skipping SAM header line: @SQ SN:PGA_scaffold63103__1_contigs__length_21263 LN:21263 skipping SAM header line: @SQ SN:PGA_scaffold63107__1_contigs__length_18816 LN:18816 skipping SAM header line: @SQ SN:PGA_scaffold63109__1_contigs__length_21191 LN:21191 skipping SAM header line: @SQ SN:PGA_scaffold63114__1_contigs__length_20136 LN:20136 skipping SAM header line: @SQ SN:PGA_scaffold63115__1_contigs__length_32288 LN:32288 skipping SAM header line: @SQ SN:PGA_scaffold63137__1_contigs__length_10152 LN:10152 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold63169__1_contigs__length_28245 LN:28245 skipping SAM header line: @SQ SN:PGA_scaffold63175__1_contigs__length_32817 LN:32817 skipping SAM header line: @SQ SN:PGA_scaffold63179__1_contigs__length_28674 LN:28674 skipping SAM header line: @SQ SN:PGA_scaffold63182__1_contigs__length_17746 LN:17746 skipping SAM header line: @SQ SN:PGA_scaffold63183__1_contigs__length_10924 LN:10924 skipping SAM header line: @SQ SN:PGA_scaffold63185__1_contigs__length_28136 LN:28136 skipping SAM header line: @SQ SN:PGA_scaffold63188__1_contigs__length_14745 LN:14745 skipping SAM header line: @SQ SN:PGA_scaffold63189__1_contigs__length_15614 LN:15614 skipping SAM header line: @SQ SN:PGA_scaffold63192__1_contigs__length_21979 LN:21979 skipping SAM header line: @SQ SN:PGA_scaffold63196__1_contigs__length_54760 LN:54760 skipping SAM header line: @SQ SN:PGA_scaffold63198__1_contigs__length_39852 LN:39852 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold63262__1_contigs__length_24805 LN:24805 skipping SAM header line: @SQ SN:PGA_scaffold63265__1_contigs__length_16164 LN:16164 skipping SAM header line: @SQ SN:PGA_scaffold63266__1_contigs__length_21763 LN:21763 skipping SAM header line: @SQ SN:PGA_scaffold63269__1_contigs__length_21881 LN:21881 skipping SAM header line: @SQ SN:PGA_scaffold63270__1_contigs__length_11826 LN:11826 skipping SAM header line: @SQ SN:PGA_scaffold63277__1_contigs__length_43210 LN:43210 skipping SAM header line: @SQ SN:PGA_scaffold63278__1_contigs__length_17408 LN:17408 skipping SAM header line: @SQ SN:PGA_scaffold63280__1_contigs__length_78184 LN:78184 skipping SAM header line: @SQ SN:PGA_scaffold63281__1_contigs__length_29909 LN:29909 skipping SAM header line: @SQ SN:PGA_scaffold63282__1_contigs__length_48451 LN:48451 skipping SAM header line: @SQ SN:PGA_scaffold63284__1_contigs__length_25006 LN:25006 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold63781__1_contigs__length_16735 LN:16735 skipping SAM header line: @SQ SN:PGA_scaffold63786__1_contigs__length_11628 LN:11628 skipping SAM header line: @SQ SN:PGA_scaffold63787__1_contigs__length_19075 LN:19075 skipping SAM header line: @SQ SN:PGA_scaffold63788__1_contigs__length_79173 LN:79173 skipping SAM header line: @SQ SN:PGA_scaffold63789__1_contigs__length_27932 LN:27932 skipping SAM header line: @SQ SN:PGA_scaffold63790__1_contigs__length_19229 LN:19229 skipping SAM header line: @SQ SN:PGA_scaffold63792__1_contigs__length_18149 LN:18149 skipping SAM header line: @SQ SN:PGA_scaffold63801__1_contigs__length_24114 LN:24114 skipping SAM header line: @SQ SN:PGA_scaffold63804__1_contigs__length_12889 LN:12889 skipping SAM header line: @SQ SN:PGA_scaffold63805__1_contigs__length_23603 LN:23603 skipping SAM header line: @SQ SN:PGA_scaffold63807__1_contigs__length_10119 LN:10119 skipping SAM header line: @SQ SN:PGA_scaffold63808__1_contigs__length_12536 LN:12536 skipping SAM header line: @SQ SN:PGA_scaffold63809__1_contigs__length_18092 LN:18092 skipping SAM header line: @SQ SN:PGA_scaffold63816__1_contigs__length_12362 LN:12362 skipping SAM header line: @SQ SN:PGA_scaffold63817__1_contigs__length_15119 LN:15119 skipping SAM header line: @SQ SN:PGA_scaffold63820__1_contigs__length_19196 LN:19196 skipping SAM header line: @SQ SN:PGA_scaffold63824__1_contigs__length_17121 LN:17121 skipping SAM header line: @SQ SN:PGA_scaffold63831__1_contigs__length_19868 LN:19868 skipping SAM header line: @SQ SN:PGA_scaffold63833__1_contigs__length_18515 LN:18515 skipping SAM header line: @SQ SN:PGA_scaffold63836__1_contigs__length_10208 LN:10208 skipping SAM header line: @SQ SN:PGA_scaffold63839__1_contigs__length_15058 LN:15058 skipping SAM header line: @SQ SN:PGA_scaffold63840__1_contigs__length_13486 LN:13486 skipping SAM header line: @SQ SN:PGA_scaffold63841__1_contigs__length_10277 LN:10277 skipping SAM header line: @SQ SN:PGA_scaffold63843__1_contigs__length_14986 LN:14986 skipping SAM header line: @SQ SN:PGA_scaffold63844__1_contigs__length_20550 LN:20550 skipping SAM header line: @SQ SN:PGA_scaffold63850__1_contigs__length_25889 LN:25889 skipping SAM header line: @SQ SN:PGA_scaffold63851__1_contigs__length_12213 LN:12213 skipping SAM header line: @SQ SN:PGA_scaffold63863__1_contigs__length_15996 LN:15996 skipping SAM header line: @SQ SN:PGA_scaffold63864__1_contigs__length_16980 LN:16980 skipping SAM header line: @SQ SN:PGA_scaffold63874__1_contigs__length_36908 LN:36908 skipping SAM header line: @SQ SN:PGA_scaffold63875__1_contigs__length_15232 LN:15232 skipping SAM header line: @SQ SN:PGA_scaffold63879__1_contigs__length_13306 LN:13306 skipping SAM header line: @SQ SN:PGA_scaffold63880__1_contigs__length_18632 LN:18632 skipping SAM header line: @SQ SN:PGA_scaffold63883__1_contigs__length_68258 LN:68258 skipping SAM header line: @SQ SN:PGA_scaffold63886__1_contigs__length_33964 LN:33964 skipping SAM header line: @SQ SN:PGA_scaffold63888__1_contigs__length_20253 LN:20253 skipping SAM header line: @SQ SN:PGA_scaffold63889__1_contigs__length_15597 LN:15597 skipping SAM header line: @SQ SN:PGA_scaffold63890__1_contigs__length_10214 LN:10214 skipping SAM header line: @SQ SN:PGA_scaffold63891__1_contigs__length_19378 LN:19378 skipping SAM header line: @SQ SN:PGA_scaffold63899__1_contigs__length_23502 LN:23502 skipping SAM header line: @SQ SN:PGA_scaffold63901__1_contigs__length_33737 LN:33737 skipping SAM header line: @SQ SN:PGA_scaffold63902__1_contigs__length_30981 LN:30981 skipping SAM header line: @SQ SN:PGA_scaffold63903__1_contigs__length_12429 LN:12429 skipping SAM header line: @SQ SN:PGA_scaffold63904__1_contigs__length_56940 LN:56940 skipping SAM header line: @SQ SN:PGA_scaffold63905__1_contigs__length_13536 LN:13536 skipping SAM header line: @SQ SN:PGA_scaffold63908__1_contigs__length_17226 LN:17226 skipping SAM header line: @SQ SN:PGA_scaffold63910__1_contigs__length_14197 LN:14197 skipping SAM header line: @SQ SN:PGA_scaffold63925__1_contigs__length_11639 LN:11639 skipping SAM header line: @SQ SN:PGA_scaffold63929__1_contigs__length_10391 LN:10391 skipping SAM header line: @SQ SN:PGA_scaffold63936__1_contigs__length_12053 LN:12053 skipping SAM header line: @SQ SN:PGA_scaffold63940__1_contigs__length_14652 LN:14652 skipping SAM header line: @SQ SN:PGA_scaffold63941__1_contigs__length_11305 LN:11305 skipping SAM header line: @SQ SN:PGA_scaffold63946__1_contigs__length_27634 LN:27634 skipping SAM header line: @SQ SN:PGA_scaffold63952__1_contigs__length_19466 LN:19466 skipping SAM header line: @SQ SN:PGA_scaffold63956__1_contigs__length_32393 LN:32393 skipping SAM header line: @SQ SN:PGA_scaffold63957__1_contigs__length_20755 LN:20755 skipping SAM header line: @SQ SN:PGA_scaffold63959__1_contigs__length_13384 LN:13384 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold63993__1_contigs__length_10256 LN:10256 skipping SAM header line: @SQ SN:PGA_scaffold63999__1_contigs__length_42041 LN:42041 skipping SAM header line: @SQ SN:PGA_scaffold64014__1_contigs__length_11855 LN:11855 skipping SAM header line: @SQ SN:PGA_scaffold64025__1_contigs__length_40125 LN:40125 skipping SAM header line: @SQ SN:PGA_scaffold64034__1_contigs__length_18652 LN:18652 skipping SAM header line: @SQ SN:PGA_scaffold64035__1_contigs__length_14077 LN:14077 skipping SAM header line: @SQ SN:PGA_scaffold64039__1_contigs__length_17284 LN:17284 skipping SAM header line: @SQ SN:PGA_scaffold64044__1_contigs__length_17462 LN:17462 skipping SAM header line: @SQ SN:PGA_scaffold64047__1_contigs__length_15465 LN:15465 skipping SAM header line: @SQ SN:PGA_scaffold64049__1_contigs__length_45875 LN:45875 skipping SAM header line: @SQ SN:PGA_scaffold64054__1_contigs__length_70679 LN:70679 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64105__1_contigs__length_10755 LN:10755 skipping SAM header line: @SQ SN:PGA_scaffold64113__1_contigs__length_37629 LN:37629 skipping SAM header line: @SQ SN:PGA_scaffold64114__1_contigs__length_16539 LN:16539 skipping SAM header line: @SQ SN:PGA_scaffold64120__1_contigs__length_20258 LN:20258 skipping SAM header line: @SQ SN:PGA_scaffold64134__1_contigs__length_23828 LN:23828 skipping SAM header line: @SQ SN:PGA_scaffold64135__1_contigs__length_18646 LN:18646 skipping SAM header line: @SQ SN:PGA_scaffold64136__1_contigs__length_15830 LN:15830 skipping SAM header line: @SQ SN:PGA_scaffold64139__1_contigs__length_10301 LN:10301 skipping SAM header line: @SQ SN:PGA_scaffold64140__1_contigs__length_27409 LN:27409 skipping SAM header line: @SQ SN:PGA_scaffold64144__1_contigs__length_53004 LN:53004 skipping SAM header line: @SQ SN:PGA_scaffold64150__1_contigs__length_10331 LN:10331 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64236__1_contigs__length_11047 LN:11047 skipping SAM header line: @SQ SN:PGA_scaffold64257__1_contigs__length_16315 LN:16315 skipping SAM header line: @SQ SN:PGA_scaffold64259__1_contigs__length_11693 LN:11693 skipping SAM header line: @SQ SN:PGA_scaffold64260__1_contigs__length_22408 LN:22408 skipping SAM header line: @SQ SN:PGA_scaffold64262__1_contigs__length_13612 LN:13612 skipping SAM header line: @SQ SN:PGA_scaffold64265__1_contigs__length_11300 LN:11300 skipping SAM header line: @SQ SN:PGA_scaffold64271__1_contigs__length_15788 LN:15788 skipping SAM header line: @SQ SN:PGA_scaffold64277__1_contigs__length_37318 LN:37318 skipping SAM header line: @SQ SN:PGA_scaffold64282__1_contigs__length_14608 LN:14608 skipping SAM header line: @SQ SN:PGA_scaffold64283__1_contigs__length_12404 LN:12404 skipping SAM header line: @SQ SN:PGA_scaffold64290__1_contigs__length_16617 LN:16617 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64331__1_contigs__length_15816 LN:15816 skipping SAM header line: @SQ SN:PGA_scaffold64336__1_contigs__length_10406 LN:10406 skipping SAM header line: @SQ SN:PGA_scaffold64338__1_contigs__length_27423 LN:27423 skipping SAM header line: @SQ SN:PGA_scaffold64339__1_contigs__length_32767 LN:32767 skipping SAM header line: @SQ SN:PGA_scaffold64342__1_contigs__length_26292 LN:26292 skipping SAM header line: @SQ SN:PGA_scaffold64343__1_contigs__length_16215 LN:16215 skipping SAM header line: @SQ SN:PGA_scaffold64344__1_contigs__length_22442 LN:22442 skipping SAM header line: @SQ SN:PGA_scaffold64345__1_contigs__length_20440 LN:20440 skipping SAM header line: @SQ SN:PGA_scaffold64346__1_contigs__length_11766 LN:11766 skipping SAM header line: @SQ SN:PGA_scaffold64348__1_contigs__length_27043 LN:27043 skipping SAM header line: @SQ SN:PGA_scaffold64350__1_contigs__length_12544 LN:12544 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64407__1_contigs__length_10817 LN:10817 skipping SAM header line: @SQ SN:PGA_scaffold64413__1_contigs__length_24489 LN:24489 skipping SAM header line: @SQ SN:PGA_scaffold64418__1_contigs__length_13923 LN:13923 skipping SAM header line: @SQ SN:PGA_scaffold64420__1_contigs__length_10191 LN:10191 skipping SAM header line: @SQ SN:PGA_scaffold64424__1_contigs__length_18909 LN:18909 skipping SAM header line: @SQ SN:PGA_scaffold64425__1_contigs__length_10870 LN:10870 skipping SAM header line: @SQ SN:PGA_scaffold64426__1_contigs__length_49077 LN:49077 skipping SAM header line: @SQ SN:PGA_scaffold64437__1_contigs__length_13251 LN:13251 skipping SAM header line: @SQ SN:PGA_scaffold64445__1_contigs__length_19583 LN:19583 skipping SAM header line: @SQ SN:PGA_scaffold64446__1_contigs__length_12816 LN:12816 skipping SAM header line: @SQ SN:PGA_scaffold64451__1_contigs__length_18104 LN:18104 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64471__1_contigs__length_34271 LN:34271 skipping SAM header line: @SQ SN:PGA_scaffold64472__1_contigs__length_17024 LN:17024 skipping SAM header line: @SQ SN:PGA_scaffold64473__1_contigs__length_33437 LN:33437 skipping SAM header line: @SQ SN:PGA_scaffold64474__1_contigs__length_10658 LN:10658 skipping SAM header line: @SQ SN:PGA_scaffold64475__1_contigs__length_12937 LN:12937 skipping SAM header line: @SQ SN:PGA_scaffold64482__1_contigs__length_24406 LN:24406 skipping SAM header line: @SQ SN:PGA_scaffold64491__1_contigs__length_10063 LN:10063 skipping SAM header line: @SQ SN:PGA_scaffold64496__1_contigs__length_12925 LN:12925 skipping SAM header line: @SQ SN:PGA_scaffold64511__1_contigs__length_10348 LN:10348 skipping SAM header line: @SQ SN:PGA_scaffold64518__1_contigs__length_11803 LN:11803 skipping SAM header line: @SQ SN:PGA_scaffold64529__1_contigs__length_33564 LN:33564 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64601__1_contigs__length_25922 LN:25922 skipping SAM header line: @SQ SN:PGA_scaffold64602__1_contigs__length_28737 LN:28737 skipping SAM header line: @SQ SN:PGA_scaffold64604__1_contigs__length_30801 LN:30801 skipping SAM header line: @SQ SN:PGA_scaffold64605__1_contigs__length_26360 LN:26360 skipping SAM header line: @SQ SN:PGA_scaffold64606__1_contigs__length_35651 LN:35651 skipping SAM header line: @SQ SN:PGA_scaffold64607__1_contigs__length_70013 LN:70013 skipping SAM header line: @SQ SN:PGA_scaffold64608__1_contigs__length_49602 LN:49602 skipping SAM header line: @SQ SN:PGA_scaffold64609__1_contigs__length_21660 LN:21660 skipping SAM header line: @SQ SN:PGA_scaffold64613__1_contigs__length_42419 LN:42419 skipping SAM header line: @SQ SN:PGA_scaffold64614__1_contigs__length_26585 LN:26585 skipping SAM header line: @SQ SN:PGA_scaffold64615__1_contigs__length_27488 LN:27488 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64697__1_contigs__length_43204 LN:43204 skipping SAM header line: @SQ SN:PGA_scaffold64698__1_contigs__length_20020 LN:20020 skipping SAM header line: @SQ SN:PGA_scaffold64699__1_contigs__length_32242 LN:32242 skipping SAM header line: @SQ SN:PGA_scaffold64700__1_contigs__length_13383 LN:13383 skipping SAM header line: @SQ SN:PGA_scaffold64701__1_contigs__length_57865 LN:57865 skipping SAM header line: @SQ SN:PGA_scaffold64702__1_contigs__length_30546 LN:30546 skipping SAM header line: @SQ SN:PGA_scaffold64706__1_contigs__length_13787 LN:13787 skipping SAM header line: @SQ SN:PGA_scaffold64707__1_contigs__length_24159 LN:24159 skipping SAM header line: @SQ SN:PGA_scaffold64708__1_contigs__length_12853 LN:12853 skipping SAM header line: @SQ SN:PGA_scaffold64709__1_contigs__length_19526 LN:19526 skipping SAM header line: @SQ SN:PGA_scaffold64729__1_contigs__length_14606 LN:14606 skipping SAM header line: @SQ SN:PGA_scaffold64736__1_contigs__length_10682 LN:10682 skipping SAM header line: @SQ SN:PGA_scaffold64737__1_contigs__length_40853 LN:40853 skipping SAM header line: @SQ SN:PGA_scaffold64739__1_contigs__length_13088 LN:13088 skipping SAM header line: @SQ SN:PGA_scaffold64740__1_contigs__length_11834 LN:11834 skipping SAM header line: @SQ SN:PGA_scaffold64742__1_contigs__length_65506 LN:65506 skipping SAM header line: @SQ SN:PGA_scaffold64745__1_contigs__length_21099 LN:21099 skipping SAM header line: @SQ SN:PGA_scaffold64755__1_contigs__length_23427 LN:23427 skipping SAM header line: @SQ SN:PGA_scaffold64759__1_contigs__length_10812 LN:10812 skipping SAM header line: @SQ SN:PGA_scaffold64771__1_contigs__length_12072 LN:12072 skipping SAM header line: @SQ SN:PGA_scaffold64773__1_contigs__length_73184 LN:73184 skipping SAM header line: @SQ SN:PGA_scaffold64777__1_contigs__length_12845 LN:12845 skipping SAM header line: @SQ SN:PGA_scaffold64778__1_contigs__length_11206 LN:11206 skipping SAM header line: @SQ SN:PGA_scaffold64783__1_contigs__length_13470 LN:13470 skipping SAM header line: @SQ SN:PGA_scaffold64786__1_contigs__length_23782 LN:23782 skipping SAM header line: @SQ SN:PGA_scaffold64787__1_contigs__length_22639 LN:22639 skipping SAM header line: @SQ SN:PGA_scaffold64788__1_contigs__length_17296 LN:17296 skipping SAM header line: @SQ SN:PGA_scaffold64789__1_contigs__length_47691 LN:47691 skipping SAM header line: @SQ SN:PGA_scaffold64790__1_contigs__length_34222 LN:34222 skipping SAM header line: @SQ SN:PGA_scaffold64797__1_contigs__length_12789 LN:12789 skipping SAM header line: @SQ SN:PGA_scaffold64799__1_contigs__length_10365 LN:10365 skipping SAM header line: @SQ SN:PGA_scaffold64802__1_contigs__length_28858 LN:28858 skipping SAM header line: @SQ SN:PGA_scaffold64804__1_contigs__length_11973 LN:11973 skipping SAM header line: @SQ SN:PGA_scaffold64806__1_contigs__length_15366 LN:15366 skipping SAM header line: @SQ SN:PGA_scaffold64807__1_contigs__length_22513 LN:22513 skipping SAM header line: @SQ SN:PGA_scaffold64816__1_contigs__length_10032 LN:10032 skipping SAM header line: @SQ SN:PGA_scaffold64818__1_contigs__length_10030 LN:10030 skipping SAM header line: @SQ SN:PGA_scaffold64824__1_contigs__length_15264 LN:15264 skipping SAM header line: @SQ SN:PGA_scaffold64825__1_contigs__length_54777 LN:54777 skipping SAM header line: @SQ SN:PGA_scaffold64826__1_contigs__length_30214 LN:30214 skipping SAM header line: @SQ SN:PGA_scaffold64829__1_contigs__length_11859 LN:11859 skipping SAM header line: @SQ SN:PGA_scaffold64833__1_contigs__length_10949 LN:10949 skipping SAM header line: @SQ SN:PGA_scaffold64834__1_contigs__length_14650 LN:14650 skipping SAM header line: @SQ SN:PGA_scaffold64835__1_contigs__length_17954 LN:17954 skipping SAM header line: @SQ SN:PGA_scaffold64837__1_contigs__length_15936 LN:15936 skipping SAM header line: @SQ SN:PGA_scaffold64840__1_contigs__length_19387 LN:19387 skipping SAM header line: @SQ SN:PGA_scaffold64844__1_contigs__length_20726 LN:20726 skipping SAM header line: @SQ SN:PGA_scaffold64845__1_contigs__length_19706 LN:19706 skipping SAM header line: @SQ SN:PGA_scaffold64871__1_contigs__length_11051 LN:11051 skipping SAM header line: @SQ SN:PGA_scaffold64874__1_contigs__length_10742 LN:10742 skipping SAM header line: @SQ SN:PGA_scaffold64878__1_contigs__length_12082 LN:12082 skipping SAM header line: @SQ SN:PGA_scaffold64882__1_contigs__length_39867 LN:39867 skipping SAM header line: @SQ SN:PGA_scaffold64889__1_contigs__length_13128 LN:13128 skipping SAM header line: @SQ SN:PGA_scaffold64896__1_contigs__length_13912 LN:13912 skipping SAM header line: @SQ SN:PGA_scaffold64898__1_contigs__length_27232 LN:27232 skipping SAM header line: @SQ SN:PGA_scaffold64901__1_contigs__length_21452 LN:21452 skipping SAM header line: @SQ SN:PGA_scaffold64903__1_contigs__length_42771 LN:42771 skipping SAM header line: @SQ SN:PGA_scaffold64931__1_contigs__length_44617 LN:44617 skipping SAM header line: @SQ SN:PGA_scaffold64934__1_contigs__length_30286 LN:30286 skipping SAM header line: @SQ SN:PGA_scaffold64938__1_contigs__length_24875 LN:24875 skipping SAM header line: @SQ SN:PGA_scaffold64940__1_contigs__length_15129 LN:15129 skipping SAM header line: @SQ SN:PGA_scaffold64943__1_contigs__length_10709 LN:10709 skipping SAM header line: @SQ SN:PGA_scaffold64944__1_contigs__length_19091 LN:19091 skipping SAM header line: @SQ SN:PGA_scaffold64945__1_contigs__length_12712 LN:12712 skipping SAM header line: @SQ SN:PGA_scaffold64947__1_contigs__length_14465 LN:14465 skipping SAM header line: @SQ SN:PGA_scaffold64951__1_contigs__length_19883 LN:19883 skipping SAM header line: @SQ SN:PGA_scaffold64952__1_contigs__length_10341 LN:10341 skipping SAM header line: @SQ SN:PGA_scaffold64954__1_contigs__length_35731 LN:35731 skipping SAM header line: @SQ SN:PGA_scaffold64957__1_contigs__length_15626 LN:15626 skipping SAM header line: @SQ SN:PGA_scaffold64964__1_contigs__length_54048 LN:54048 skipping SAM header line: @SQ SN:PGA_scaffold64968__1_contigs__length_10488 LN:10488 skipping SAM header line: @SQ SN:PGA_scaffold64969__1_contigs__length_21777 LN:21777 skipping SAM header line: @SQ SN:PGA_scaffold64971__1_contigs__length_96233 LN:96233 skipping SAM header line: @SQ SN:PGA_scaffold64975__1_contigs__length_17928 LN:17928 skipping SAM header line: @SQ SN:PGA_scaffold64977__1_contigs__length_16363 LN:16363 skipping SAM header line: @SQ SN:PGA_scaffold64983__1_contigs__length_10453 LN:10453 skipping SAM header line: @SQ SN:PGA_scaffold64984__1_contigs__length_10974 LN:10974 skipping SAM header line: @SQ SN:PGA_scaffold64995__1_contigs__length_10387 LN:10387 skipping SAM header line: @SQ SN:PGA_scaffold65000__1_contigs__length_10516 LN:10516 skipping SAM header line: @SQ SN:PGA_scaffold65002__1_contigs__length_12827 LN:12827 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold65034__1_contigs__length_15179 LN:15179 skipping SAM header line: @SQ SN:PGA_scaffold65039__1_contigs__length_13762 LN:13762 skipping SAM header line: @SQ SN:PGA_scaffold65043__1_contigs__length_21744 LN:21744 skipping SAM header line: @SQ SN:PGA_scaffold65054__1_contigs__length_21753 LN:21753 skipping SAM header line: @SQ SN:PGA_scaffold65055__1_contigs__length_11879 LN:11879 skipping SAM header line: @SQ SN:PGA_scaffold65064__1_contigs__length_15024 LN:15024 skipping SAM header line: @SQ SN:PGA_scaffold65067__1_contigs__length_16147 LN:16147 skipping SAM header line: @SQ SN:PGA_scaffold65070__1_contigs__length_19667 LN:19667 skipping SAM header line: @SQ SN:PGA_scaffold65071__1_contigs__length_24078 LN:24078 skipping SAM header line: @SQ SN:PGA_scaffold65072__1_contigs__length_13101 LN:13101 skipping SAM header line: @SQ SN:PGA_scaffold65074__1_contigs__length_11462 LN:11462 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold65117__1_contigs__length_11739 LN:11739 skipping SAM header line: @SQ SN:PGA_scaffold65119__1_contigs__length_57101 LN:57101 skipping SAM header line: @SQ SN:PGA_scaffold65120__1_contigs__length_16988 LN:16988 skipping SAM header line: @SQ SN:PGA_scaffold65121__1_contigs__length_10913 LN:10913 skipping SAM header line: @SQ SN:PGA_scaffold65123__1_contigs__length_12939 LN:12939 skipping SAM header line: @SQ SN:PGA_scaffold65124__1_contigs__length_12887 LN:12887 skipping SAM header line: @SQ SN:PGA_scaffold65125__1_contigs__length_19808 LN:19808 skipping SAM header line: @SQ SN:PGA_scaffold65131__1_contigs__length_26667 LN:26667 skipping SAM header line: @SQ SN:PGA_scaffold65133__1_contigs__length_18526 LN:18526 skipping SAM header line: @SQ SN:PGA_scaffold65137__1_contigs__length_19343 LN:19343 skipping SAM header line: @SQ SN:PGA_scaffold65142__1_contigs__length_12294 LN:12294 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold65186__1_contigs__length_41412 LN:41412 skipping SAM header line: @SQ SN:PGA_scaffold65192__1_contigs__length_22082 LN:22082 skipping SAM header line: @SQ SN:PGA_scaffold65195__1_contigs__length_13994 LN:13994 skipping SAM header line: @SQ SN:PGA_scaffold65198__1_contigs__length_44989 LN:44989 skipping SAM header line: @SQ SN:PGA_scaffold65210__1_contigs__length_25286 LN:25286 skipping SAM header line: @SQ SN:PGA_scaffold65222__1_contigs__length_26929 LN:26929 skipping SAM header line: @SQ SN:PGA_scaffold65223__1_contigs__length_18769 LN:18769 skipping SAM header line: @SQ SN:PGA_scaffold65231__1_contigs__length_21953 LN:21953 skipping SAM header line: @SQ SN:PGA_scaffold65233__1_contigs__length_13864 LN:13864 skipping SAM header line: @SQ SN:PGA_scaffold65238__1_contigs__length_11625 LN:11625 skipping SAM header line: @SQ SN:PGA_scaffold65255__1_contigs__length_59866 LN:59866 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold65322__1_contigs__length_27853 LN:27853 skipping SAM header line: @SQ SN:PGA_scaffold65325__1_contigs__length_12743 LN:12743 skipping SAM header line: @SQ SN:PGA_scaffold65326__1_contigs__length_16568 LN:16568 skipping SAM header line: @SQ SN:PGA_scaffold65328__1_contigs__length_13003 LN:13003 skipping SAM header line: @SQ SN:PGA_scaffold65329__1_contigs__length_30096 LN:30096 skipping SAM header line: @SQ SN:PGA_scaffold65331__1_contigs__length_16109 LN:16109 skipping SAM header line: @SQ SN:PGA_scaffold65332__1_contigs__length_26100 LN:26100 skipping SAM header line: @SQ SN:PGA_scaffold65334__1_contigs__length_27707 LN:27707 skipping SAM header line: @SQ SN:PGA_scaffold65342__1_contigs__length_11072 LN:11072 skipping SAM header line: @SQ SN:PGA_scaffold65343__1_contigs__length_19992 LN:19992 skipping SAM header line: @SQ SN:PGA_scaffold65345__1_contigs__length_22960 LN:22960 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold65404__1_contigs__length_19808 LN:19808 skipping SAM header line: @SQ SN:PGA_scaffold65406__1_contigs__length_15764 LN:15764 skipping SAM header line: @SQ SN:PGA_scaffold65410__1_contigs__length_18666 LN:18666 skipping SAM header line: @SQ SN:PGA_scaffold65427__1_contigs__length_16157 LN:16157 skipping SAM header line: @SQ SN:PGA_scaffold65428__1_contigs__length_13601 LN:13601 skipping SAM header line: @SQ SN:PGA_scaffold65433__1_contigs__length_18232 LN:18232 skipping SAM header line: @SQ SN:PGA_scaffold65456__1_contigs__length_14439 LN:14439 skipping SAM header line: @SQ SN:PGA_scaffold65460__1_contigs__length_18068 LN:18068 skipping SAM header line: @SQ SN:PGA_scaffold65461__1_contigs__length_37665 LN:37665 skipping SAM header line: @SQ SN:PGA_scaffold65463__1_contigs__length_10091 LN:10091 skipping SAM header line: @SQ SN:PGA_scaffold65465__1_contigs__length_31799 LN:31799 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold65508__1_contigs__length_27459 LN:27459 skipping SAM header line: @SQ SN:PGA_scaffold65509__1_contigs__length_28239 LN:28239 skipping SAM header line: @SQ SN:PGA_scaffold65510__1_contigs__length_14919 LN:14919 skipping SAM header line: @SQ SN:PGA_scaffold65513__1_contigs__length_10904 LN:10904 skipping SAM header line: @SQ SN:PGA_scaffold65517__1_contigs__length_15888 LN:15888 skipping SAM header line: @SQ SN:PGA_scaffold65518__1_contigs__length_17344 LN:17344 skipping SAM header line: @SQ SN:PGA_scaffold65519__1_contigs__length_25989 LN:25989 skipping SAM header line: @SQ SN:PGA_scaffold65524__1_contigs__length_29654 LN:29654 skipping SAM header line: @SQ SN:PGA_scaffold65529__1_contigs__length_14937 LN:14937 skipping SAM header line: @SQ SN:PGA_scaffold65532__1_contigs__length_13710 LN:13710 skipping SAM header line: @SQ SN:PGA_scaffold65536__1_contigs__length_21189 LN:21189 skipping SAM header line: @SQ SN:PGA_scaffold65539__1_contigs__length_12366 LN:12366 skipping SAM header line: @SQ SN:PGA_scaffold65553__1_contigs__length_22482 LN:22482 skipping SAM header line: @SQ SN:PGA_scaffold65556__1_contigs__length_24648 LN:24648 skipping SAM header line: @SQ SN:PGA_scaffold65559__1_contigs__length_13923 LN:13923 skipping SAM header line: @SQ SN:PGA_scaffold65560__1_contigs__length_24783 LN:24783 skipping SAM header line: @SQ SN:PGA_scaffold65561__1_contigs__length_14767 LN:14767 skipping SAM header line: @SQ SN:PGA_scaffold65566__1_contigs__length_12452 LN:12452 skipping SAM header line: @SQ SN:PGA_scaffold65585__1_contigs__length_31567 LN:31567 skipping SAM header line: @SQ SN:PGA_scaffold65587__1_contigs__length_19313 LN:19313 skipping SAM header line: @SQ SN:PGA_scaffold65590__1_contigs__length_11459 LN:11459 skipping SAM header line: @SQ SN:PGA_scaffold65592__1_contigs__length_20276 LN:20276 skipping SAM header line: @SQ SN:PGA_scaffold65596__1_contigs__length_14564 LN:14564 skipping SAM header line: @SQ SN:PGA_scaffold65600__1_contigs__length_32016 LN:32016 skipping SAM header line: @SQ SN:PGA_scaffold65604__1_contigs__length_13582 LN:13582 skipping SAM header line: @SQ SN:PGA_scaffold65623__1_contigs__length_10543 LN:10543 skipping SAM header line: @SQ SN:PGA_scaffold65625__1_contigs__length_13481 LN:13481 skipping SAM header line: @SQ SN:PGA_scaffold65629__1_contigs__length_11383 LN:11383 skipping SAM header line: @SQ SN:PGA_scaffold65630__1_contigs__length_18296 LN:18296 skipping SAM header line: @SQ SN:PGA_scaffold65632__1_contigs__length_11848 LN:11848 skipping SAM header line: @SQ SN:PGA_scaffold65637__1_contigs__length_12182 LN:12182 skipping SAM header line: @SQ SN:PGA_scaffold65638__1_contigs__length_15839 LN:15839 skipping SAM header line: @SQ SN:PGA_scaffold65639__1_contigs__length_21624 LN:21624 skipping SAM header line: @SQ SN:PGA_scaffold65645__1_contigs__length_19287 LN:19287 skipping SAM header line: @SQ SN:PGA_scaffold65646__1_contigs__length_19068 LN:19068 skipping SAM header line: @SQ SN:PGA_scaffold65650__1_contigs__length_26488 LN:26488 skipping SAM header line: @SQ SN:PGA_scaffold65653__1_contigs__length_32424 LN:32424 skipping SAM header line: @SQ SN:PGA_scaffold65660__1_contigs__length_10546 LN:10546 skipping SAM header line: @SQ SN:PGA_scaffold65683__1_contigs__length_19599 LN:19599 skipping SAM header line: @SQ SN:PGA_scaffold65685__1_contigs__length_28821 LN:28821 skipping SAM header line: @SQ SN:PGA_scaffold65686__1_contigs__length_21861 LN:21861 skipping SAM header line: @SQ SN:PGA_scaffold65693__1_contigs__length_34648 LN:34648 skipping SAM header line: @SQ SN:PGA_scaffold65697__1_contigs__length_11841 LN:11841 skipping SAM header line: @SQ SN:PGA_scaffold65712__1_contigs__length_10350 LN:10350 skipping SAM header line: @SQ SN:PGA_scaffold65714__1_contigs__length_15858 LN:15858 skipping SAM header line: @SQ SN:PGA_scaffold65716__1_contigs__length_25241 LN:25241 skipping SAM header line: @SQ SN:PGA_scaffold65717__1_contigs__length_15161 LN:15161 skipping SAM header line: @SQ SN:PGA_scaffold65718__1_contigs__length_15127 LN:15127 skipping SAM header line: @SQ SN:PGA_scaffold65720__1_contigs__length_11620 LN:11620 skipping SAM header line: @SQ SN:PGA_scaffold65727__1_contigs__length_10651 LN:10651 skipping SAM header line: @SQ SN:PGA_scaffold65737__1_contigs__length_37231 LN:37231 skipping SAM header line: @SQ SN:PGA_scaffold65741__1_contigs__length_21561 LN:21561 skipping SAM header line: @SQ SN:PGA_scaffold65742__1_contigs__length_18921 LN:18921 skipping SAM header line: @SQ SN:PGA_scaffold65744__1_contigs__length_11253 LN:11253 skipping SAM header line: @SQ SN:PGA_scaffold65760__1_contigs__length_13056 LN:13056 skipping SAM header line: @SQ SN:PGA_scaffold65765__1_contigs__length_39217 LN:39217 skipping SAM header line: @SQ SN:PGA_scaffold65766__1_contigs__length_14485 LN:14485 skipping SAM header line: @SQ SN:PGA_scaffold65777__1_contigs__length_32724 LN:32724 skipping SAM header line: @SQ SN:PGA_scaffold65780__1_contigs__length_14654 LN:14654 skipping SAM header line: @SQ SN:PGA_scaffold65781__1_contigs__length_42302 LN:42302 skipping SAM header line: @SQ SN:PGA_scaffold65786__1_contigs__length_56597 LN:56597 skipping SAM header line: @SQ SN:PGA_scaffold65792__1_contigs__length_10129 LN:10129 skipping SAM header line: @SQ SN:PGA_scaffold65807__1_contigs__length_35379 LN:35379 skipping SAM header line: @SQ SN:PGA_scaffold65809__1_contigs__length_36632 LN:36632 skipping SAM header line: @SQ SN:PGA_scaffold65815__1_contigs__length_49308 LN:49308 skipping SAM header line: @SQ SN:PGA_scaffold65820__1_contigs__length_14018 LN:14018 skipping SAM header line: @SQ SN:PGA_scaffold65822__1_contigs__length_14579 LN:14579 skipping SAM header line: @SQ SN:PGA_scaffold65827__1_contigs__length_19038 LN:19038 skipping SAM header line: @SQ SN:PGA_scaffold65828__1_contigs__length_25685 LN:25685 skipping SAM header line: @SQ SN:PGA_scaffold65830__1_contigs__length_17413 LN:17413 skipping SAM header line: @SQ SN:PGA_scaffold65832__1_contigs__length_10335 LN:10335 skipping SAM header line: @SQ SN:PGA_scaffold65846__1_contigs__length_33986 LN:33986 skipping SAM header line: @SQ SN:PGA_scaffold65847__1_contigs__length_12106 LN:12106 skipping SAM header line: @SQ SN:PGA_scaffold65851__1_contigs__length_44621 LN:44621 skipping SAM header line: @SQ SN:PGA_scaffold65862__1_contigs__length_10836 LN:10836 skipping SAM header line: @SQ SN:PGA_scaffold65864__1_contigs__length_10828 LN:10828 skipping SAM header line: @SQ SN:PGA_scaffold65866__1_contigs__length_90471 LN:90471 skipping SAM header line: @SQ SN:PGA_scaffold65867__1_contigs__length_17556 LN:17556 skipping SAM header line: @SQ SN:PGA_scaffold65869__1_contigs__length_21243 LN:21243 skipping SAM header line: @SQ SN:PGA_scaffold65871__1_contigs__length_13903 LN:13903 skipping SAM header line: @SQ SN:PGA_scaffold65878__1_contigs__length_13880 LN:13880 skipping SAM header line: @SQ SN:PGA_scaffold65885__1_contigs__length_12774 LN:12774 skipping SAM header line: @SQ SN:PGA_scaffold65889__1_contigs__length_16886 LN:16886 skipping SAM header line: @SQ SN:PGA_scaffold65896__1_contigs__length_13857 LN:13857 skipping SAM header line: @SQ SN:PGA_scaffold65899__1_contigs__length_15948 LN:15948 skipping SAM header line: @SQ SN:PGA_scaffold65900__1_contigs__length_12381 LN:12381 skipping SAM header line: @SQ SN:PGA_scaffold65905__1_contigs__length_22827 LN:22827 skipping SAM header line: @SQ SN:PGA_scaffold65911__1_contigs__length_48303 LN:48303 skipping SAM header line: @SQ SN:PGA_scaffold65912__1_contigs__length_34561 LN:34561 skipping SAM header line: @SQ SN:PGA_scaffold65916__1_contigs__length_13072 LN:13072 skipping SAM header line: @SQ SN:PGA_scaffold65920__1_contigs__length_22255 LN:22255 skipping SAM header line: @SQ SN:PGA_scaffold65921__1_contigs__length_18738 LN:18738 skipping SAM header line: @SQ SN:PGA_scaffold65931__1_contigs__length_10411 LN:10411 skipping SAM header line: @SQ SN:PGA_scaffold65934__1_contigs__length_23259 LN:23259 skipping SAM header line: @SQ SN:PGA_scaffold65940__1_contigs__length_10229 LN:10229 skipping SAM header line: @SQ SN:PGA_scaffold65943__1_contigs__length_10235 LN:10235 skipping SAM header line: @SQ SN:PGA_scaffold65945__1_contigs__length_40559 LN:40559 skipping SAM header line: @SQ SN:PGA_scaffold65949__1_contigs__length_35336 LN:35336 skipping SAM header line: @SQ SN:PGA_scaffold65953__1_contigs__length_16865 LN:16865 skipping SAM header line: @SQ SN:PGA_scaffold65954__1_contigs__length_39725 LN:39725 skipping SAM header line: @SQ SN:PGA_scaffold65959__1_contigs__length_16592 LN:16592 skipping SAM header line: @SQ SN:PGA_scaffold65964__1_contigs__length_22780 LN:22780 skipping SAM header line: @SQ SN:PGA_scaffold65967__1_contigs__length_36096 LN:36096 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold65992__1_contigs__length_21803 LN:21803 skipping SAM header line: @SQ SN:PGA_scaffold65993__1_contigs__length_17759 LN:17759 skipping SAM header line: @SQ SN:PGA_scaffold66001__1_contigs__length_39013 LN:39013 skipping SAM header line: @SQ SN:PGA_scaffold66002__1_contigs__length_11177 LN:11177 skipping SAM header line: @SQ SN:PGA_scaffold66005__1_contigs__length_13399 LN:13399 skipping SAM header line: @SQ SN:PGA_scaffold66006__1_contigs__length_15825 LN:15825 skipping SAM header line: @SQ SN:PGA_scaffold66010__1_contigs__length_12363 LN:12363 skipping SAM header line: @SQ SN:PGA_scaffold66012__1_contigs__length_11098 LN:11098 skipping SAM header line: @SQ SN:PGA_scaffold66017__1_contigs__length_20779 LN:20779 skipping SAM header line: @SQ SN:PGA_scaffold66019__1_contigs__length_15517 LN:15517 skipping SAM header line: @SQ SN:PGA_scaffold66022__1_contigs__length_21737 LN:21737 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold66068__1_contigs__length_17211 LN:17211 skipping SAM header line: @SQ SN:PGA_scaffold66071__1_contigs__length_14173 LN:14173 skipping SAM header line: @SQ SN:PGA_scaffold66073__1_contigs__length_21616 LN:21616 skipping SAM header line: @SQ SN:PGA_scaffold66074__1_contigs__length_18986 LN:18986 skipping SAM header line: @SQ SN:PGA_scaffold66075__1_contigs__length_20302 LN:20302 skipping SAM header line: @SQ SN:PGA_scaffold66076__1_contigs__length_10694 LN:10694 skipping SAM header line: @SQ SN:PGA_scaffold66079__1_contigs__length_37644 LN:37644 skipping SAM header line: @SQ SN:PGA_scaffold66085__1_contigs__length_16144 LN:16144 skipping SAM header line: @SQ SN:PGA_scaffold66087__1_contigs__length_19388 LN:19388 skipping SAM header line: @SQ SN:PGA_scaffold66089__1_contigs__length_25837 LN:25837 skipping SAM header line: @SQ SN:PGA_scaffold66090__1_contigs__length_11512 LN:11512 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold66141__1_contigs__length_15328 LN:15328 skipping SAM header line: @SQ SN:PGA_scaffold66146__1_contigs__length_10967 LN:10967 skipping SAM header line: @SQ SN:PGA_scaffold66150__1_contigs__length_18475 LN:18475 skipping SAM header line: @SQ SN:PGA_scaffold66162__1_contigs__length_25196 LN:25196 skipping SAM header line: @SQ SN:PGA_scaffold66165__1_contigs__length_20482 LN:20482 skipping SAM header line: @SQ SN:PGA_scaffold66167__1_contigs__length_24467 LN:24467 skipping SAM header line: @SQ SN:PGA_scaffold66172__1_contigs__length_62844 LN:62844 skipping SAM header line: @SQ SN:PGA_scaffold66173__1_contigs__length_34319 LN:34319 skipping SAM header line: @SQ SN:PGA_scaffold66175__1_contigs__length_16886 LN:16886 skipping SAM header line: @SQ SN:PGA_scaffold66176__1_contigs__length_16992 LN:16992 skipping SAM header line: @SQ SN:PGA_scaffold66178__1_contigs__length_49601 LN:49601 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold66227__1_contigs__length_18370 LN:18370 skipping SAM header line: @SQ SN:PGA_scaffold66228__1_contigs__length_11413 LN:11413 skipping SAM header line: @SQ SN:PGA_scaffold66231__1_contigs__length_17155 LN:17155 skipping SAM header line: @SQ SN:PGA_scaffold66249__1_contigs__length_10879 LN:10879 skipping SAM header line: @SQ SN:PGA_scaffold66255__1_contigs__length_16411 LN:16411 skipping SAM header line: @SQ SN:PGA_scaffold66275__1_contigs__length_11711 LN:11711 skipping SAM header line: @SQ SN:PGA_scaffold66276__1_contigs__length_39820 LN:39820 skipping SAM header line: @SQ SN:PGA_scaffold66279__1_contigs__length_13482 LN:13482 skipping SAM header line: @SQ SN:PGA_scaffold66293__1_contigs__length_33304 LN:33304 skipping SAM header line: @SQ SN:PGA_scaffold66299__1_contigs__length_14420 LN:14420 skipping SAM header line: @SQ SN:PGA_scaffold66312__1_contigs__length_23465 LN:23465 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold66348__1_contigs__length_24727 LN:24727 skipping SAM header line: @SQ SN:PGA_scaffold66351__1_contigs__length_16809 LN:16809 skipping SAM header line: @SQ SN:PGA_scaffold66354__1_contigs__length_13066 LN:13066 skipping SAM header line: @SQ SN:PGA_scaffold66370__1_contigs__length_14947 LN:14947 skipping SAM header line: @SQ SN:PGA_scaffold66372__1_contigs__length_10922 LN:10922 skipping SAM header line: @SQ SN:PGA_scaffold66373__1_contigs__length_11820 LN:11820 skipping SAM header line: @SQ SN:PGA_scaffold66379__1_contigs__length_24336 LN:24336 skipping SAM header line: @SQ SN:PGA_scaffold66380__1_contigs__length_16348 LN:16348 skipping SAM header line: @SQ SN:PGA_scaffold66384__1_contigs__length_11444 LN:11444 skipping SAM header line: @SQ SN:PGA_scaffold66389__1_contigs__length_12655 LN:12655 skipping SAM header line: @SQ SN:PGA_scaffold66391__1_contigs__length_17056 LN:17056 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold66453__1_contigs__length_11834 LN:11834 skipping SAM header line: @SQ SN:PGA_scaffold66457__1_contigs__length_12044 LN:12044 skipping SAM header line: @SQ SN:PGA_scaffold66458__1_contigs__length_15028 LN:15028 skipping SAM header line: @SQ SN:PGA_scaffold66460__1_contigs__length_10318 LN:10318 skipping SAM header line: @SQ SN:PGA_scaffold66474__1_contigs__length_11886 LN:11886 skipping SAM header line: @SQ SN:PGA_scaffold66479__1_contigs__length_16243 LN:16243 skipping SAM header line: @SQ SN:PGA_scaffold66481__1_contigs__length_32127 LN:32127 skipping SAM header line: @SQ SN:PGA_scaffold66502__1_contigs__length_11857 LN:11857 skipping SAM header line: @SQ SN:PGA_scaffold66508__1_contigs__length_15723 LN:15723 skipping SAM header line: @SQ SN:PGA_scaffold66510__1_contigs__length_27211 LN:27211 skipping SAM header line: @SQ SN:PGA_scaffold66513__1_contigs__length_33853 LN:33853 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold66557__1_contigs__length_39298 LN:39298 skipping SAM header line: @SQ SN:PGA_scaffold66560__1_contigs__length_10663 LN:10663 skipping SAM header line: @SQ SN:PGA_scaffold66561__1_contigs__length_11189 LN:11189 skipping SAM header line: @SQ SN:PGA_scaffold66563__1_contigs__length_19107 LN:19107 skipping SAM header line: @SQ SN:PGA_scaffold66566__1_contigs__length_12101 LN:12101 skipping SAM header line: @SQ SN:PGA_scaffold66572__1_contigs__length_20102 LN:20102 skipping SAM header line: @SQ SN:PGA_scaffold66578__1_contigs__length_12023 LN:12023 skipping SAM header line: @SQ SN:PGA_scaffold66580__1_contigs__length_10353 LN:10353 skipping SAM header line: @SQ SN:PGA_scaffold66583__1_contigs__length_17126 LN:17126 skipping SAM header line: @SQ SN:PGA_scaffold66585__1_contigs__length_19317 LN:19317 skipping SAM header line: @SQ SN:PGA_scaffold66586__1_contigs__length_14244 LN:14244 skipping SAM header line: @SQ SN:PGA_scaffold66591__1_contigs__length_15885 LN:15885 skipping SAM header line: @SQ SN:PGA_scaffold66592__1_contigs__length_26732 LN:26732 skipping SAM header line: @SQ SN:PGA_scaffold66594__1_contigs__length_45007 LN:45007 skipping SAM header line: @SQ SN:PGA_scaffold66603__1_contigs__length_10929 LN:10929 skipping SAM header line: @SQ SN:PGA_scaffold66608__1_contigs__length_13403 LN:13403 skipping SAM header line: @SQ SN:PGA_scaffold66616__1_contigs__length_22030 LN:22030 skipping SAM header line: @SQ SN:PGA_scaffold66631__1_contigs__length_21922 LN:21922 skipping SAM header line: @SQ SN:PGA_scaffold66632__1_contigs__length_18082 LN:18082 skipping SAM header line: @SQ SN:PGA_scaffold66633__1_contigs__length_12639 LN:12639 skipping SAM header line: @SQ SN:PGA_scaffold66635__1_contigs__length_11491 LN:11491 skipping SAM header line: @SQ SN:PGA_scaffold66639__1_contigs__length_18065 LN:18065 skipping SAM header line: @SQ SN:PGA_scaffold66641__1_contigs__length_41123 LN:41123 skipping SAM header line: @SQ SN:PGA_scaffold66642__1_contigs__length_33139 LN:33139 skipping SAM header line: @SQ SN:PGA_scaffold66646__1_contigs__length_27962 LN:27962 skipping SAM header line: @SQ SN:PGA_scaffold66649__1_contigs__length_11909 LN:11909 skipping SAM header line: @SQ SN:PGA_scaffold66656__1_contigs__length_57103 LN:57103 skipping SAM header line: @SQ SN:PGA_scaffold66658__1_contigs__length_18447 LN:18447 skipping SAM header line: @SQ SN:PGA_scaffold66664__1_contigs__length_22036 LN:22036 skipping SAM header line: @SQ SN:PGA_scaffold66665__1_contigs__length_10115 LN:10115 skipping SAM header line: @SQ SN:PGA_scaffold66666__1_contigs__length_58206 LN:58206 skipping SAM header line: @SQ SN:PGA_scaffold66673__1_contigs__length_20693 LN:20693 skipping SAM header line: @SQ SN:PGA_scaffold66674__1_contigs__length_30853 LN:30853 skipping SAM header line: @SQ SN:PGA_scaffold66681__1_contigs__length_22743 LN:22743 skipping SAM header line: @SQ SN:PGA_scaffold66682__1_contigs__length_34382 LN:34382 skipping SAM header line: @SQ SN:PGA_scaffold66694__1_contigs__length_20870 LN:20870 skipping SAM header line: @SQ SN:PGA_scaffold66695__1_contigs__length_12530 LN:12530 skipping SAM header line: @SQ SN:PGA_scaffold66696__1_contigs__length_14570 LN:14570 skipping SAM header line: @SQ SN:PGA_scaffold66703__1_contigs__length_24458 LN:24458 skipping SAM header line: @SQ SN:PGA_scaffold66711__1_contigs__length_11082 LN:11082 skipping SAM header line: @SQ SN:PGA_scaffold66713__1_contigs__length_84867 LN:84867 skipping SAM header line: @SQ SN:PGA_scaffold66717__1_contigs__length_43668 LN:43668 skipping SAM header line: @SQ SN:PGA_scaffold66720__1_contigs__length_18959 LN:18959 skipping SAM header line: @SQ SN:PGA_scaffold66721__1_contigs__length_30932 LN:30932 skipping SAM header line: @SQ SN:PGA_scaffold66725__1_contigs__length_23098 LN:23098 skipping SAM header line: @SQ SN:PGA_scaffold66726__1_contigs__length_13036 LN:13036 skipping SAM header line: @SQ SN:PGA_scaffold66729__1_contigs__length_32971 LN:32971 skipping SAM header line: @SQ SN:PGA_scaffold66734__1_contigs__length_17403 LN:17403 skipping SAM header line: @SQ SN:PGA_scaffold66737__1_contigs__length_35128 LN:35128 skipping SAM header line: @SQ SN:PGA_scaffold66738__1_contigs__length_13340 LN:13340 skipping SAM header line: @SQ SN:PGA_scaffold66739__1_contigs__length_12250 LN:12250 skipping SAM header line: @SQ SN:PGA_scaffold66745__1_contigs__length_22344 LN:22344 skipping SAM header line: @SQ SN:PGA_scaffold66746__1_contigs__length_15247 LN:15247 skipping SAM header line: @SQ SN:PGA_scaffold66747__1_contigs__length_12645 LN:12645 skipping SAM header line: @SQ SN:PGA_scaffold66748__1_contigs__length_27405 LN:27405 skipping SAM header line: @SQ SN:PGA_scaffold66758__1_contigs__length_15784 LN:15784 skipping SAM header line: @SQ SN:PGA_scaffold66760__1_contigs__length_21010 LN:21010 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold66822__1_contigs__length_13544 LN:13544 skipping SAM header line: @SQ SN:PGA_scaffold66825__1_contigs__length_11956 LN:11956 skipping SAM header line: @SQ SN:PGA_scaffold66828__1_contigs__length_23600 LN:23600 skipping SAM header line: @SQ SN:PGA_scaffold66836__1_contigs__length_11311 LN:11311 skipping SAM header line: @SQ SN:PGA_scaffold66840__1_contigs__length_11967 LN:11967 skipping SAM header line: @SQ SN:PGA_scaffold66842__1_contigs__length_26539 LN:26539 skipping SAM header line: @SQ SN:PGA_scaffold66844__1_contigs__length_10026 LN:10026 skipping SAM header line: @SQ SN:PGA_scaffold66849__1_contigs__length_14025 LN:14025 skipping SAM header line: @SQ SN:PGA_scaffold66852__1_contigs__length_15924 LN:15924 skipping SAM header line: @SQ SN:PGA_scaffold66854__1_contigs__length_42887 LN:42887 skipping SAM header line: @SQ SN:PGA_scaffold66855__1_contigs__length_14573 LN:14573 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold66909__1_contigs__length_20606 LN:20606 skipping SAM header line: @SQ SN:PGA_scaffold66916__1_contigs__length_16562 LN:16562 skipping SAM header line: @SQ SN:PGA_scaffold66919__1_contigs__length_10154 LN:10154 skipping SAM header line: @SQ SN:PGA_scaffold66928__1_contigs__length_21617 LN:21617 skipping SAM header line: @SQ SN:PGA_scaffold66931__1_contigs__length_18414 LN:18414 skipping SAM header line: @SQ SN:PGA_scaffold66932__1_contigs__length_31539 LN:31539 skipping SAM header line: @SQ SN:PGA_scaffold66933__1_contigs__length_21566 LN:21566 skipping SAM header line: @SQ SN:PGA_scaffold66935__1_contigs__length_15200 LN:15200 skipping SAM header line: @SQ SN:PGA_scaffold66946__1_contigs__length_13116 LN:13116 skipping SAM header line: @SQ SN:PGA_scaffold66949__1_contigs__length_14570 LN:14570 skipping SAM header line: @SQ SN:PGA_scaffold66950__1_contigs__length_13095 LN:13095 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold67401__1_contigs__length_21931 LN:21931 skipping SAM header line: @SQ SN:PGA_scaffold67407__1_contigs__length_73205 LN:73205 skipping SAM header line: @SQ SN:PGA_scaffold67409__1_contigs__length_30272 LN:30272 skipping SAM header line: @SQ SN:PGA_scaffold67413__1_contigs__length_20291 LN:20291 skipping SAM header line: @SQ SN:PGA_scaffold67415__1_contigs__length_21745 LN:21745 skipping SAM header line: @SQ SN:PGA_scaffold67421__1_contigs__length_10999 LN:10999 skipping SAM header line: @SQ SN:PGA_scaffold67432__1_contigs__length_10154 LN:10154 skipping SAM header line: @SQ SN:PGA_scaffold67437__1_contigs__length_10097 LN:10097 skipping SAM header line: @SQ SN:PGA_scaffold67438__1_contigs__length_17579 LN:17579 skipping SAM header line: @SQ SN:PGA_scaffold67439__1_contigs__length_14696 LN:14696 skipping SAM header line: @SQ SN:PGA_scaffold67446__1_contigs__length_12030 LN:12030 skipping SAM header line: @SQ SN:PGA_scaffold67460__1_contigs__length_63707 LN:63707 skipping SAM header line: @SQ SN:PGA_scaffold67461__1_contigs__length_11258 LN:11258 skipping SAM header line: @SQ SN:PGA_scaffold67463__1_contigs__length_10750 LN:10750 skipping SAM header line: @SQ SN:PGA_scaffold67466__1_contigs__length_10937 LN:10937 skipping SAM header line: @SQ SN:PGA_scaffold67468__1_contigs__length_14085 LN:14085 skipping SAM header line: @SQ SN:PGA_scaffold67469__1_contigs__length_34100 LN:34100 skipping SAM header line: @SQ SN:PGA_scaffold67470__1_contigs__length_15524 LN:15524 skipping SAM header line: @SQ SN:PGA_scaffold67473__1_contigs__length_25020 LN:25020 skipping SAM header line: @SQ SN:PGA_scaffold67479__1_contigs__length_13399 LN:13399 skipping SAM header line: @SQ SN:PGA_scaffold67483__1_contigs__length_17674 LN:17674 skipping SAM header line: @SQ SN:PGA_scaffold67486__1_contigs__length_21888 LN:21888 skipping SAM header line: @SQ SN:PGA_scaffold67490__1_contigs__length_12061 LN:12061 skipping SAM header line: @SQ SN:PGA_scaffold67491__1_contigs__length_36666 LN:36666 skipping SAM header line: @SQ SN:PGA_scaffold67492__1_contigs__length_32377 LN:32377 skipping SAM header line: @SQ SN:PGA_scaffold67493__1_contigs__length_20242 LN:20242 skipping SAM header line: @SQ SN:PGA_scaffold67494__1_contigs__length_12632 LN:12632 skipping SAM header line: @SQ SN:PGA_scaffold67498__1_contigs__length_10194 LN:10194 skipping SAM header line: @SQ SN:PGA_scaffold67500__1_contigs__length_32321 LN:32321 skipping SAM header line: @SQ SN:PGA_scaffold67501__1_contigs__length_45282 LN:45282 skipping SAM header line: @SQ SN:PGA_scaffold67505__1_contigs__length_12050 LN:12050 skipping SAM header line: @SQ SN:PGA_scaffold67506__1_contigs__length_34916 LN:34916 skipping SAM header line: @SQ SN:PGA_scaffold67515__1_contigs__length_17782 LN:17782 skipping SAM header line: @SQ SN:PGA_scaffold67525__1_contigs__length_13599 LN:13599 skipping SAM header line: @SQ SN:PGA_scaffold67529__1_contigs__length_10226 LN:10226 skipping SAM header line: @SQ SN:PGA_scaffold67530__1_contigs__length_16625 LN:16625 skipping SAM header line: @SQ SN:PGA_scaffold67532__1_contigs__length_45886 LN:45886 skipping SAM header line: @SQ SN:PGA_scaffold67533__1_contigs__length_20050 LN:20050 skipping SAM header line: @SQ SN:PGA_scaffold67536__1_contigs__length_11873 LN:11873 skipping SAM header line: @SQ SN:PGA_scaffold67542__1_contigs__length_23105 LN:23105 skipping SAM header line: @SQ SN:PGA_scaffold67543__1_contigs__length_23759 LN:23759 skipping SAM header line: @SQ SN:PGA_scaffold67547__1_contigs__length_20628 LN:20628 skipping SAM header line: @SQ SN:PGA_scaffold67550__1_contigs__length_14207 LN:14207 skipping SAM header line: @SQ SN:PGA_scaffold67555__1_contigs__length_42738 LN:42738 skipping SAM header line: @SQ SN:PGA_scaffold67558__1_contigs__length_21784 LN:21784 skipping SAM header line: @SQ SN:PGA_scaffold67561__1_contigs__length_14293 LN:14293 skipping SAM header line: @SQ SN:PGA_scaffold67566__1_contigs__length_131359 LN:131359 skipping SAM header line: @SQ SN:PGA_scaffold67576__1_contigs__length_71513 LN:71513 skipping SAM header line: @SQ SN:PGA_scaffold67578__1_contigs__length_27356 LN:27356 skipping SAM header line: @SQ SN:PGA_scaffold67579__1_contigs__length_30606 LN:30606 skipping SAM header line: @SQ SN:PGA_scaffold67580__1_contigs__length_24740 LN:24740 skipping SAM header line: @SQ SN:PGA_scaffold67582__1_contigs__length_11769 LN:11769 skipping SAM header line: @SQ SN:PGA_scaffold67585__1_contigs__length_23850 LN:23850 skipping SAM header line: @SQ SN:PGA_scaffold67586__1_contigs__length_12979 LN:12979 skipping SAM header line: @SQ SN:PGA_scaffold67589__1_contigs__length_18468 LN:18468 skipping SAM header line: @SQ SN:PGA_scaffold67597__1_contigs__length_23764 LN:23764 skipping SAM header line: @SQ SN:PGA_scaffold67598__1_contigs__length_15870 LN:15870 skipping SAM header line: @SQ SN:PGA_scaffold67604__1_contigs__length_30533 LN:30533 skipping SAM header line: @SQ SN:PGA_scaffold67605__1_contigs__length_17735 LN:17735 skipping SAM header line: @SQ SN:PGA_scaffold67610__1_contigs__length_13789 LN:13789 skipping SAM header line: @SQ SN:PGA_scaffold67612__1_contigs__length_17612 LN:17612 skipping SAM header line: @SQ SN:PGA_scaffold67613__1_contigs__length_14070 LN:14070 skipping SAM header line: @SQ SN:PGA_scaffold67614__1_contigs__length_45881 LN:45881 skipping SAM header line: @SQ SN:PGA_scaffold67617__1_contigs__length_12950 LN:12950 skipping SAM header line: @SQ SN:PGA_scaffold67618__1_contigs__length_11033 LN:11033 skipping SAM header line: @SQ SN:PGA_scaffold67620__1_contigs__length_20917 LN:20917 skipping SAM header line: @SQ SN:PGA_scaffold67625__1_contigs__length_14381 LN:14381 skipping SAM header line: @SQ SN:PGA_scaffold67629__1_contigs__length_41418 LN:41418 skipping SAM header line: @SQ SN:PGA_scaffold67631__1_contigs__length_10722 LN:10722 skipping SAM header line: @SQ SN:PGA_scaffold67633__1_contigs__length_49909 LN:49909 skipping SAM header line: @SQ SN:PGA_scaffold67641__1_contigs__length_35654 LN:35654 skipping SAM header line: @SQ SN:PGA_scaffold67644__1_contigs__length_20371 LN:20371 skipping SAM header line: @SQ SN:PGA_scaffold67650__1_contigs__length_14157 LN:14157 skipping SAM header line: @SQ SN:PGA_scaffold67658__1_contigs__length_17135 LN:17135 skipping SAM header line: @SQ SN:PGA_scaffold67660__1_contigs__length_10690 LN:10690 skipping SAM header line: @SQ SN:PGA_scaffold67662__1_contigs__length_10740 LN:10740 skipping SAM header line: @SQ SN:PGA_scaffold67666__1_contigs__length_32329 LN:32329 skipping SAM header line: @SQ SN:PGA_scaffold67667__1_contigs__length_14971 LN:14971 skipping SAM header line: @SQ SN:PGA_scaffold67685__1_contigs__length_28168 LN:28168 skipping SAM header line: @SQ SN:PGA_scaffold67686__1_contigs__length_19575 LN:19575 skipping SAM header line: @SQ SN:PGA_scaffold67687__1_contigs__length_62665 LN:62665 skipping SAM header line: @SQ SN:PGA_scaffold67689__1_contigs__length_12947 LN:12947 skipping SAM header line: @SQ SN:PGA_scaffold67695__1_contigs__length_13971 LN:13971 skipping SAM header line: @SQ SN:PGA_scaffold67701__1_contigs__length_10402 LN:10402 skipping SAM header line: @SQ SN:PGA_scaffold67702__1_contigs__length_30259 LN:30259 skipping SAM header line: @SQ SN:PGA_scaffold67709__1_contigs__length_32364 LN:32364 skipping SAM header line: @SQ SN:PGA_scaffold67712__1_contigs__length_16541 LN:16541 skipping SAM header line: @SQ SN:PGA_scaffold67716__1_contigs__length_14418 LN:14418 skipping SAM header line: @SQ SN:PGA_scaffold67723__1_contigs__length_18276 LN:18276 skipping SAM header line: @SQ SN:PGA_scaffold67725__1_contigs__length_14552 LN:14552 skipping SAM header line: @SQ SN:PGA_scaffold67728__1_contigs__length_18306 LN:18306 skipping SAM header line: @SQ SN:PGA_scaffold67736__1_contigs__length_20727 LN:20727 skipping SAM header line: @SQ SN:PGA_scaffold67737__1_contigs__length_18888 LN:18888 skipping SAM header line: @SQ SN:PGA_scaffold67741__1_contigs__length_10397 LN:10397 skipping SAM header line: @SQ SN:PGA_scaffold67745__1_contigs__length_41387 LN:41387 skipping SAM header line: @SQ SN:PGA_scaffold67749__1_contigs__length_26117 LN:26117 skipping SAM header line: @SQ SN:PGA_scaffold67750__1_contigs__length_26616 LN:26616 skipping SAM header line: @SQ SN:PGA_scaffold67754__1_contigs__length_46865 LN:46865 skipping SAM header line: @SQ SN:PGA_scaffold67755__1_contigs__length_12072 LN:12072 skipping SAM header line: @SQ SN:PGA_scaffold67764__1_contigs__length_13771 LN:13771 skipping SAM header line: @SQ SN:PGA_scaffold67765__1_contigs__length_24041 LN:24041 skipping SAM header line: @SQ SN:PGA_scaffold67770__1_contigs__length_12629 LN:12629 skipping SAM header line: @SQ SN:PGA_scaffold67774__1_contigs__length_13710 LN:13710 skipping SAM header line: @SQ SN:PGA_scaffold67776__1_contigs__length_13892 LN:13892 skipping SAM header line: @SQ SN:PGA_scaffold67781__1_contigs__length_42225 LN:42225 skipping SAM header line: @SQ SN:PGA_scaffold67782__1_contigs__length_31631 LN:31631 skipping SAM header line: @SQ SN:PGA_scaffold67786__1_contigs__length_18099 LN:18099 skipping SAM header line: @SQ SN:PGA_scaffold67789__1_contigs__length_11921 LN:11921 skipping SAM header line: @SQ SN:PGA_scaffold67791__1_contigs__length_13525 LN:13525 skipping SAM header line: @SQ SN:PGA_scaffold67794__1_contigs__length_36514 LN:36514 skipping SAM header line: @SQ SN:PGA_scaffold67804__1_contigs__length_11514 LN:11514 skipping SAM header line: @SQ SN:PGA_scaffold67814__1_contigs__length_18455 LN:18455 skipping SAM header line: @SQ SN:PGA_scaffold67815__1_contigs__length_14205 LN:14205 skipping SAM header line: @SQ SN:PGA_scaffold67816__1_contigs__length_11245 LN:11245 skipping SAM header line: @SQ SN:PGA_scaffold67817__1_contigs__length_15331 LN:15331 skipping SAM header line: @SQ SN:PGA_scaffold67821__1_contigs__length_11146 LN:11146 skipping SAM header line: @SQ SN:PGA_scaffold67829__1_contigs__length_18010 LN:18010 skipping SAM header line: @SQ SN:PGA_scaffold67830__1_contigs__length_24107 LN:24107 skipping SAM header line: @SQ SN:PGA_scaffold67840__1_contigs__length_26787 LN:26787 skipping SAM header line: @SQ SN:PGA_scaffold67849__1_contigs__length_23952 LN:23952 skipping SAM header line: @SQ SN:PGA_scaffold67854__1_contigs__length_12303 LN:12303 skipping SAM header line: @SQ SN:PGA_scaffold67860__1_contigs__length_16757 LN:16757 skipping SAM header line: @SQ SN:PGA_scaffold67868__1_contigs__length_14907 LN:14907 skipping SAM header line: @SQ SN:PGA_scaffold67871__1_contigs__length_10602 LN:10602 skipping SAM header line: @SQ SN:PGA_scaffold67873__1_contigs__length_11169 LN:11169 skipping SAM header line: @SQ SN:PGA_scaffold67874__1_contigs__length_35874 LN:35874 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold67920__1_contigs__length_18362 LN:18362 skipping SAM header line: @SQ SN:PGA_scaffold67921__1_contigs__length_42945 LN:42945 skipping SAM header line: @SQ SN:PGA_scaffold67929__1_contigs__length_21958 LN:21958 skipping SAM header line: @SQ SN:PGA_scaffold67932__1_contigs__length_11255 LN:11255 skipping SAM header line: @SQ SN:PGA_scaffold67933__1_contigs__length_18370 LN:18370 skipping SAM header line: @SQ SN:PGA_scaffold67942__1_contigs__length_32835 LN:32835 skipping SAM header line: @SQ SN:PGA_scaffold67945__1_contigs__length_10415 LN:10415 skipping SAM header line: @SQ SN:PGA_scaffold67946__1_contigs__length_11194 LN:11194 skipping SAM header line: @SQ SN:PGA_scaffold67949__1_contigs__length_10236 LN:10236 skipping SAM header line: @SQ SN:PGA_scaffold67958__1_contigs__length_11185 LN:11185 skipping SAM header line: @SQ SN:PGA_scaffold67959__1_contigs__length_22360 LN:22360 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68016__1_contigs__length_15504 LN:15504 skipping SAM header line: @SQ SN:PGA_scaffold68017__1_contigs__length_10539 LN:10539 skipping SAM header line: @SQ SN:PGA_scaffold68020__1_contigs__length_14963 LN:14963 skipping SAM header line: @SQ SN:PGA_scaffold68024__1_contigs__length_21067 LN:21067 skipping SAM header line: @SQ SN:PGA_scaffold68033__1_contigs__length_23910 LN:23910 skipping SAM header line: @SQ SN:PGA_scaffold68035__1_contigs__length_42103 LN:42103 skipping SAM header line: @SQ SN:PGA_scaffold68039__1_contigs__length_32241 LN:32241 skipping SAM header line: @SQ SN:PGA_scaffold68042__1_contigs__length_43179 LN:43179 skipping SAM header line: @SQ SN:PGA_scaffold68043__1_contigs__length_10356 LN:10356 skipping SAM header line: @SQ SN:PGA_scaffold68044__1_contigs__length_31992 LN:31992 skipping SAM header line: @SQ SN:PGA_scaffold68045__1_contigs__length_16334 LN:16334 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68099__1_contigs__length_15938 LN:15938 skipping SAM header line: @SQ SN:PGA_scaffold68100__1_contigs__length_14992 LN:14992 skipping SAM header line: @SQ SN:PGA_scaffold68102__1_contigs__length_15080 LN:15080 skipping SAM header line: @SQ SN:PGA_scaffold68106__1_contigs__length_11446 LN:11446 skipping SAM header line: @SQ SN:PGA_scaffold68108__1_contigs__length_11156 LN:11156 skipping SAM header line: @SQ SN:PGA_scaffold68116__1_contigs__length_17061 LN:17061 skipping SAM header line: @SQ SN:PGA_scaffold68118__1_contigs__length_11257 LN:11257 skipping SAM header line: @SQ SN:PGA_scaffold68130__1_contigs__length_14165 LN:14165 skipping SAM header line: @SQ SN:PGA_scaffold68142__1_contigs__length_10694 LN:10694 skipping SAM header line: @SQ SN:PGA_scaffold68150__1_contigs__length_50783 LN:50783 skipping SAM header line: @SQ SN:PGA_scaffold68157__1_contigs__length_34106 LN:34106 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68209__1_contigs__length_24164 LN:24164 skipping SAM header line: @SQ SN:PGA_scaffold68216__1_contigs__length_14378 LN:14378 skipping SAM header line: @SQ SN:PGA_scaffold68218__1_contigs__length_13758 LN:13758 skipping SAM header line: @SQ SN:PGA_scaffold68222__1_contigs__length_15256 LN:15256 skipping SAM header line: @SQ SN:PGA_scaffold68225__1_contigs__length_13708 LN:13708 skipping SAM header line: @SQ SN:PGA_scaffold68226__1_contigs__length_11508 LN:11508 skipping SAM header line: @SQ SN:PGA_scaffold68228__1_contigs__length_14315 LN:14315 skipping SAM header line: @SQ SN:PGA_scaffold68230__1_contigs__length_15785 LN:15785 skipping SAM header line: @SQ SN:PGA_scaffold68236__1_contigs__length_13511 LN:13511 skipping SAM header line: @SQ SN:PGA_scaffold68241__1_contigs__length_16089 LN:16089 skipping SAM header line: @SQ SN:PGA_scaffold68242__1_contigs__length_10917 LN:10917 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68272__1_contigs__length_21275 LN:21275 skipping SAM header line: @SQ SN:PGA_scaffold68273__1_contigs__length_46075 LN:46075 skipping SAM header line: @SQ SN:PGA_scaffold68274__1_contigs__length_63866 LN:63866 skipping SAM header line: @SQ SN:PGA_scaffold68275__1_contigs__length_20919 LN:20919 skipping SAM header line: @SQ SN:PGA_scaffold68283__1_contigs__length_24754 LN:24754 skipping SAM header line: @SQ SN:PGA_scaffold68284__1_contigs__length_23423 LN:23423 skipping SAM header line: @SQ SN:PGA_scaffold68295__1_contigs__length_23211 LN:23211 skipping SAM header line: @SQ SN:PGA_scaffold68298__1_contigs__length_11817 LN:11817 skipping SAM header line: @SQ SN:PGA_scaffold68304__1_contigs__length_19247 LN:19247 skipping SAM header line: @SQ SN:PGA_scaffold68307__1_contigs__length_14020 LN:14020 skipping SAM header line: @SQ SN:PGA_scaffold68308__1_contigs__length_10949 LN:10949 skipping SAM header line: @SQ SN:PGA_scaffold68309__1_contigs__length_11409 LN:11409 skipping SAM header line: @SQ SN:PGA_scaffold68310__1_contigs__length_23726 LN:23726 skipping SAM header line: @SQ SN:PGA_scaffold68315__1_contigs__length_18512 LN:18512 skipping SAM header line: @SQ SN:PGA_scaffold68318__1_contigs__length_17350 LN:17350 skipping SAM header line: @SQ SN:PGA_scaffold68323__1_contigs__length_27871 LN:27871 skipping SAM header line: @SQ SN:PGA_scaffold68324__1_contigs__length_25140 LN:25140 skipping SAM header line: @SQ SN:PGA_scaffold68332__1_contigs__length_52891 LN:52891 skipping SAM header line: @SQ SN:PGA_scaffold68335__1_contigs__length_15593 LN:15593 skipping SAM header line: @SQ SN:PGA_scaffold68336__1_contigs__length_23224 LN:23224 skipping SAM header line: @SQ SN:PGA_scaffold68338__1_contigs__length_13806 LN:13806 skipping SAM header line: @SQ SN:PGA_scaffold68342__1_contigs__length_22793 LN:22793 skipping SAM header line: @SQ SN:PGA_scaffold68343__1_contigs__length_14172 LN:14172 skipping SAM header line: @SQ SN:PGA_scaffold68344__1_contigs__length_21157 LN:21157 skipping SAM header line: @SQ SN:PGA_scaffold68347__1_contigs__length_10227 LN:10227 skipping SAM header line: @SQ SN:PGA_scaffold68349__1_contigs__length_27523 LN:27523 skipping SAM header line: @SQ SN:PGA_scaffold68355__1_contigs__length_44244 LN:44244 skipping SAM header line: @SQ SN:PGA_scaffold68357__1_contigs__length_26793 LN:26793 skipping SAM header line: @SQ SN:PGA_scaffold68358__1_contigs__length_25963 LN:25963 skipping SAM header line: @SQ SN:PGA_scaffold68363__1_contigs__length_11934 LN:11934 skipping SAM header line: @SQ SN:PGA_scaffold68364__1_contigs__length_27979 LN:27979 skipping SAM header line: @SQ SN:PGA_scaffold68372__1_contigs__length_24098 LN:24098 skipping SAM header line: @SQ SN:PGA_scaffold68373__1_contigs__length_13660 LN:13660 skipping SAM header line: @SQ SN:PGA_scaffold68378__1_contigs__length_16676 LN:16676 skipping SAM header line: @SQ SN:PGA_scaffold68382__1_contigs__length_35256 LN:35256 skipping SAM header line: @SQ SN:PGA_scaffold68384__1_contigs__length_17504 LN:17504 skipping SAM header line: @SQ SN:PGA_scaffold68386__1_contigs__length_28921 LN:28921 skipping SAM header line: @SQ SN:PGA_scaffold68387__1_contigs__length_39768 LN:39768 skipping SAM header line: @SQ SN:PGA_scaffold68394__1_contigs__length_31191 LN:31191 skipping SAM header line: @SQ SN:PGA_scaffold68395__1_contigs__length_45596 LN:45596 skipping SAM header line: @SQ SN:PGA_scaffold68397__1_contigs__length_46584 LN:46584 skipping SAM header line: @SQ SN:PGA_scaffold68399__1_contigs__length_12387 LN:12387 skipping SAM header line: @SQ SN:PGA_scaffold68403__1_contigs__length_10614 LN:10614 skipping SAM header line: @SQ SN:PGA_scaffold68406__1_contigs__length_23078 LN:23078 skipping SAM header line: @SQ SN:PGA_scaffold68410__1_contigs__length_13547 LN:13547 skipping SAM header line: @SQ SN:PGA_scaffold68411__1_contigs__length_26528 LN:26528 skipping SAM header line: @SQ SN:PGA_scaffold68413__1_contigs__length_11384 LN:11384 skipping SAM header line: @SQ SN:PGA_scaffold68419__1_contigs__length_27677 LN:27677 skipping SAM header line: @SQ SN:PGA_scaffold68425__1_contigs__length_32148 LN:32148 skipping SAM header line: @SQ SN:PGA_scaffold68426__1_contigs__length_11324 LN:11324 skipping SAM header line: @SQ SN:PGA_scaffold68430__1_contigs__length_21994 LN:21994 skipping SAM header line: @SQ SN:PGA_scaffold68431__1_contigs__length_13242 LN:13242 skipping SAM header line: @SQ SN:PGA_scaffold68437__1_contigs__length_19513 LN:19513 skipping SAM header line: @SQ SN:PGA_scaffold68438__1_contigs__length_17421 LN:17421 skipping SAM header line: @SQ SN:PGA_scaffold68439__1_contigs__length_18726 LN:18726 skipping SAM header line: @SQ SN:PGA_scaffold68446__1_contigs__length_20675 LN:20675 skipping SAM header line: @SQ SN:PGA_scaffold68448__1_contigs__length_13184 LN:13184 skipping SAM header line: @SQ SN:PGA_scaffold68449__1_contigs__length_27960 LN:27960 skipping SAM header line: @SQ SN:PGA_scaffold68451__1_contigs__length_19257 LN:19257 skipping SAM header line: @SQ SN:PGA_scaffold68453__1_contigs__length_19385 LN:19385 skipping SAM header line: @SQ SN:PGA_scaffold68455__1_contigs__length_49171 LN:49171 skipping SAM header line: @SQ SN:PGA_scaffold68456__1_contigs__length_10918 LN:10918 skipping SAM header line: @SQ SN:PGA_scaffold68463__1_contigs__length_36019 LN:36019 skipping SAM header line: @SQ SN:PGA_scaffold68476__1_contigs__length_31493 LN:31493 skipping SAM header line: @SQ SN:PGA_scaffold68482__1_contigs__length_22161 LN:22161 skipping SAM header line: @SQ SN:PGA_scaffold68483__1_contigs__length_57370 LN:57370 skipping SAM header line: @SQ SN:PGA_scaffold68484__1_contigs__length_47467 LN:47467 skipping SAM header line: @SQ SN:PGA_scaffold68493__1_contigs__length_15288 LN:15288 skipping SAM header line: @SQ SN:PGA_scaffold68495__1_contigs__length_36431 LN:36431 skipping SAM header line: @SQ SN:PGA_scaffold68498__1_contigs__length_33054 LN:33054 skipping SAM header line: @SQ SN:PGA_scaffold68505__1_contigs__length_17828 LN:17828 skipping SAM header line: @SQ SN:PGA_scaffold68521__1_contigs__length_17029 LN:17029 skipping SAM header line: @SQ SN:PGA_scaffold68522__1_contigs__length_26059 LN:26059 skipping SAM header line: @SQ SN:PGA_scaffold68526__1_contigs__length_11574 LN:11574 skipping SAM header line: @SQ SN:PGA_scaffold68529__1_contigs__length_45929 LN:45929 skipping SAM header line: @SQ SN:PGA_scaffold68530__1_contigs__length_16508 LN:16508 skipping SAM header line: @SQ SN:PGA_scaffold68536__1_contigs__length_53547 LN:53547 skipping SAM header line: @SQ SN:PGA_scaffold68538__1_contigs__length_10996 LN:10996 skipping SAM header line: @SQ SN:PGA_scaffold68540__1_contigs__length_29479 LN:29479 skipping SAM header line: @SQ SN:PGA_scaffold68551__1_contigs__length_29418 LN:29418 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68582__1_contigs__length_12024 LN:12024 skipping SAM header line: @SQ SN:PGA_scaffold68585__1_contigs__length_29454 LN:29454 skipping SAM header line: @SQ SN:PGA_scaffold68594__1_contigs__length_14545 LN:14545 skipping SAM header line: @SQ SN:PGA_scaffold68603__1_contigs__length_16128 LN:16128 skipping SAM header line: @SQ SN:PGA_scaffold68613__1_contigs__length_44262 LN:44262 skipping SAM header line: @SQ SN:PGA_scaffold68614__1_contigs__length_14870 LN:14870 skipping SAM header line: @SQ SN:PGA_scaffold68615__1_contigs__length_21221 LN:21221 skipping SAM header line: @SQ SN:PGA_scaffold68617__1_contigs__length_13064 LN:13064 skipping SAM header line: @SQ SN:PGA_scaffold68621__1_contigs__length_21512 LN:21512 skipping SAM header line: @SQ SN:PGA_scaffold68622__1_contigs__length_15036 LN:15036 skipping SAM header line: @SQ SN:PGA_scaffold68624__1_contigs__length_11404 LN:11404 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68662__1_contigs__length_16689 LN:16689 skipping SAM header line: @SQ SN:PGA_scaffold68667__1_contigs__length_11331 LN:11331 skipping SAM header line: @SQ SN:PGA_scaffold68671__1_contigs__length_10790 LN:10790 skipping SAM header line: @SQ SN:PGA_scaffold68674__1_contigs__length_32423 LN:32423 skipping SAM header line: @SQ SN:PGA_scaffold68692__1_contigs__length_18638 LN:18638 skipping SAM header line: @SQ SN:PGA_scaffold68699__1_contigs__length_27193 LN:27193 skipping SAM header line: @SQ SN:PGA_scaffold68703__1_contigs__length_10874 LN:10874 skipping SAM header line: @SQ SN:PGA_scaffold68709__1_contigs__length_19220 LN:19220 skipping SAM header line: @SQ SN:PGA_scaffold68712__1_contigs__length_23661 LN:23661 skipping SAM header line: @SQ SN:PGA_scaffold68718__1_contigs__length_16337 LN:16337 skipping SAM header line: @SQ SN:PGA_scaffold68721__1_contigs__length_42259 LN:42259 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68776__1_contigs__length_29954 LN:29954 skipping SAM header line: @SQ SN:PGA_scaffold68777__1_contigs__length_38286 LN:38286 skipping SAM header line: @SQ SN:PGA_scaffold68778__1_contigs__length_27771 LN:27771 skipping SAM header line: @SQ SN:PGA_scaffold68780__1_contigs__length_20441 LN:20441 skipping SAM header line: @SQ SN:PGA_scaffold68784__1_contigs__length_10142 LN:10142 skipping SAM header line: @SQ SN:PGA_scaffold68785__1_contigs__length_11241 LN:11241 skipping SAM header line: @SQ SN:PGA_scaffold68791__1_contigs__length_15091 LN:15091 skipping SAM header line: @SQ SN:PGA_scaffold68792__1_contigs__length_13138 LN:13138 skipping SAM header line: @SQ SN:PGA_scaffold68793__1_contigs__length_10770 LN:10770 skipping SAM header line: @SQ SN:PGA_scaffold68794__1_contigs__length_10773 LN:10773 skipping SAM header line: @SQ SN:PGA_scaffold68795__1_contigs__length_49952 LN:49952 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68844__1_contigs__length_19621 LN:19621 skipping SAM header line: @SQ SN:PGA_scaffold68845__1_contigs__length_27874 LN:27874 skipping SAM header line: @SQ SN:PGA_scaffold68849__1_contigs__length_42390 LN:42390 skipping SAM header line: @SQ SN:PGA_scaffold68855__1_contigs__length_38462 LN:38462 skipping SAM header line: @SQ SN:PGA_scaffold68858__1_contigs__length_37103 LN:37103 skipping SAM header line: @SQ SN:PGA_scaffold68862__1_contigs__length_25180 LN:25180 skipping SAM header line: @SQ SN:PGA_scaffold68866__1_contigs__length_15500 LN:15500 skipping SAM header line: @SQ SN:PGA_scaffold68867__1_contigs__length_29477 LN:29477 skipping SAM header line: @SQ SN:PGA_scaffold68876__1_contigs__length_15966 LN:15966 skipping SAM header line: @SQ SN:PGA_scaffold68878__1_contigs__length_23378 LN:23378 skipping SAM header line: @SQ SN:PGA_scaffold68883__1_contigs__length_12697 LN:12697 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68932__1_contigs__length_23589 LN:23589 skipping SAM header line: @SQ SN:PGA_scaffold68933__1_contigs__length_15943 LN:15943 skipping SAM header line: @SQ SN:PGA_scaffold68938__1_contigs__length_15636 LN:15636 skipping SAM header line: @SQ SN:PGA_scaffold68939__1_contigs__length_20900 LN:20900 skipping SAM header line: @SQ SN:PGA_scaffold68942__1_contigs__length_12458 LN:12458 skipping SAM header line: @SQ SN:PGA_scaffold68943__1_contigs__length_27006 LN:27006 skipping SAM header line: @SQ SN:PGA_scaffold68944__1_contigs__length_26741 LN:26741 skipping SAM header line: @SQ SN:PGA_scaffold68947__1_contigs__length_10936 LN:10936 skipping SAM header line: @SQ SN:PGA_scaffold68948__1_contigs__length_15370 LN:15370 skipping SAM header line: @SQ SN:PGA_scaffold68952__1_contigs__length_14184 LN:14184 skipping SAM header line: @SQ SN:PGA_scaffold68953__1_contigs__length_10104 LN:10104 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69025__1_contigs__length_21443 LN:21443 skipping SAM header line: @SQ SN:PGA_scaffold69031__1_contigs__length_49096 LN:49096 skipping SAM header line: @SQ SN:PGA_scaffold69036__1_contigs__length_10931 LN:10931 skipping SAM header line: @SQ SN:PGA_scaffold69039__1_contigs__length_29725 LN:29725 skipping SAM header line: @SQ SN:PGA_scaffold69046__1_contigs__length_29699 LN:29699 skipping SAM header line: @SQ SN:PGA_scaffold69048__1_contigs__length_14639 LN:14639 skipping SAM header line: @SQ SN:PGA_scaffold69053__1_contigs__length_10018 LN:10018 skipping SAM header line: @SQ SN:PGA_scaffold69056__1_contigs__length_16920 LN:16920 skipping SAM header line: @SQ SN:PGA_scaffold69057__1_contigs__length_12123 LN:12123 skipping SAM header line: @SQ SN:PGA_scaffold69064__1_contigs__length_30263 LN:30263 skipping SAM header line: @SQ SN:PGA_scaffold69066__1_contigs__length_41967 LN:41967 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69099__1_contigs__length_56136 LN:56136 skipping SAM header line: @SQ SN:PGA_scaffold69103__1_contigs__length_23145 LN:23145 skipping SAM header line: @SQ SN:PGA_scaffold69107__1_contigs__length_36690 LN:36690 skipping SAM header line: @SQ SN:PGA_scaffold69108__1_contigs__length_12404 LN:12404 skipping SAM header line: @SQ SN:PGA_scaffold69113__1_contigs__length_18132 LN:18132 skipping SAM header line: @SQ SN:PGA_scaffold69115__1_contigs__length_15937 LN:15937 skipping SAM header line: @SQ SN:PGA_scaffold69123__1_contigs__length_14399 LN:14399 skipping SAM header line: @SQ SN:PGA_scaffold69124__1_contigs__length_17133 LN:17133 skipping SAM header line: @SQ SN:PGA_scaffold69130__1_contigs__length_52115 LN:52115 skipping SAM header line: @SQ SN:PGA_scaffold69131__1_contigs__length_10220 LN:10220 skipping SAM header line: @SQ SN:PGA_scaffold69135__1_contigs__length_13963 LN:13963 skipping SAM header line: @SQ SN:PGA_scaffold69149__1_contigs__length_34885 LN:34885 skipping SAM header line: @SQ SN:PGA_scaffold69151__1_contigs__length_14202 LN:14202 skipping SAM header line: @SQ SN:PGA_scaffold69158__1_contigs__length_10389 LN:10389 skipping SAM header line: @SQ SN:PGA_scaffold69167__1_contigs__length_14893 LN:14893 skipping SAM header line: @SQ SN:PGA_scaffold69172__1_contigs__length_18479 LN:18479 skipping SAM header line: @SQ SN:PGA_scaffold69173__1_contigs__length_31383 LN:31383 skipping SAM header line: @SQ SN:PGA_scaffold69179__1_contigs__length_22050 LN:22050 skipping SAM header line: @SQ SN:PGA_scaffold69185__1_contigs__length_25922 LN:25922 skipping SAM header line: @SQ SN:PGA_scaffold69186__1_contigs__length_21767 LN:21767 skipping SAM header line: @SQ SN:PGA_scaffold69188__1_contigs__length_11715 LN:11715 skipping SAM header line: @SQ SN:PGA_scaffold69190__1_contigs__length_13189 LN:13189 skipping SAM header line: @SQ SN:PGA_scaffold69191__1_contigs__length_10888 LN:10888 skipping SAM header line: @SQ SN:PGA_scaffold69193__1_contigs__length_11714 LN:11714 skipping SAM header line: @SQ SN:PGA_scaffold69199__1_contigs__length_27933 LN:27933 skipping SAM header line: @SQ SN:PGA_scaffold69200__1_contigs__length_19344 LN:19344 skipping SAM header line: @SQ SN:PGA_scaffold69202__1_contigs__length_19028 LN:19028 skipping SAM header line: @SQ SN:PGA_scaffold69217__1_contigs__length_20211 LN:20211 skipping SAM header line: @SQ SN:PGA_scaffold69225__1_contigs__length_14733 LN:14733 skipping SAM header line: @SQ SN:PGA_scaffold69232__1_contigs__length_20771 LN:20771 skipping SAM header line: @SQ SN:PGA_scaffold69243__1_contigs__length_23878 LN:23878 skipping SAM header line: @SQ SN:PGA_scaffold69247__1_contigs__length_16374 LN:16374 skipping SAM header line: @SQ SN:PGA_scaffold69248__1_contigs__length_21363 LN:21363 skipping SAM header line: @SQ SN:PGA_scaffold69250__1_contigs__length_10644 LN:10644 skipping SAM header line: @SQ SN:PGA_scaffold69251__1_contigs__length_36385 LN:36385 skipping SAM header line: @SQ SN:PGA_scaffold69257__1_contigs__length_18568 LN:18568 skipping SAM header line: @SQ SN:PGA_scaffold69261__1_contigs__length_14940 LN:14940 skipping SAM header line: @SQ SN:PGA_scaffold69266__1_contigs__length_10298 LN:10298 skipping SAM header line: @SQ SN:PGA_scaffold69267__1_contigs__length_11036 LN:11036 skipping SAM header line: @SQ SN:PGA_scaffold69269__1_contigs__length_13780 LN:13780 skipping SAM header line: @SQ SN:PGA_scaffold69271__1_contigs__length_10610 LN:10610 skipping SAM header line: @SQ SN:PGA_scaffold69274__1_contigs__length_11924 LN:11924 skipping SAM header line: @SQ SN:PGA_scaffold69280__1_contigs__length_10555 LN:10555 skipping SAM header line: @SQ SN:PGA_scaffold69282__1_contigs__length_12500 LN:12500 skipping SAM header line: @SQ SN:PGA_scaffold69286__1_contigs__length_32034 LN:32034 skipping SAM header line: @SQ SN:PGA_scaffold69288__1_contigs__length_17553 LN:17553 skipping SAM header line: @SQ SN:PGA_scaffold69292__1_contigs__length_13647 LN:13647 skipping SAM header line: @SQ SN:PGA_scaffold69294__1_contigs__length_33022 LN:33022 skipping SAM header line: @SQ SN:PGA_scaffold69296__1_contigs__length_14922 LN:14922 skipping SAM header line: @SQ SN:PGA_scaffold69299__1_contigs__length_11048 LN:11048 skipping SAM header line: @SQ SN:PGA_scaffold69301__1_contigs__length_12152 LN:12152 skipping SAM header line: @SQ SN:PGA_scaffold69306__1_contigs__length_12978 LN:12978 skipping SAM header line: @SQ SN:PGA_scaffold69310__1_contigs__length_18259 LN:18259 skipping SAM header line: @SQ SN:PGA_scaffold69311__1_contigs__length_34239 LN:34239 skipping SAM header line: @SQ SN:PGA_scaffold69315__1_contigs__length_15505 LN:15505 skipping SAM header line: @SQ SN:PGA_scaffold69316__1_contigs__length_24525 LN:24525 skipping SAM header line: @SQ SN:PGA_scaffold69318__1_contigs__length_21365 LN:21365 skipping SAM header line: @SQ SN:PGA_scaffold69324__1_contigs__length_11098 LN:11098 skipping SAM header line: @SQ SN:PGA_scaffold69328__1_contigs__length_11025 LN:11025 skipping SAM header line: @SQ SN:PGA_scaffold69331__1_contigs__length_19825 LN:19825 skipping SAM header line: @SQ SN:PGA_scaffold69332__1_contigs__length_37657 LN:37657 skipping SAM header line: @SQ SN:PGA_scaffold69349__1_contigs__length_22993 LN:22993 skipping SAM header line: @SQ SN:PGA_scaffold69350__1_contigs__length_15623 LN:15623 skipping SAM header line: @SQ SN:PGA_scaffold69353__1_contigs__length_32912 LN:32912 skipping SAM header line: @SQ SN:PGA_scaffold69354__1_contigs__length_42598 LN:42598 skipping SAM header line: @SQ SN:PGA_scaffold69357__1_contigs__length_11732 LN:11732 skipping SAM header line: @SQ SN:PGA_scaffold69362__1_contigs__length_32911 LN:32911 skipping SAM header line: @SQ SN:PGA_scaffold69367__1_contigs__length_13197 LN:13197 skipping SAM header line: @SQ SN:PGA_scaffold69369__1_contigs__length_20125 LN:20125 skipping SAM header line: @SQ SN:PGA_scaffold69372__1_contigs__length_17716 LN:17716 skipping SAM header line: @SQ SN:PGA_scaffold69373__1_contigs__length_12686 LN:12686 skipping SAM header line: @SQ SN:PGA_scaffold69375__1_contigs__length_15230 LN:15230 skipping SAM header line: @SQ SN:PGA_scaffold69376__1_contigs__length_34929 LN:34929 skipping SAM header line: @SQ SN:PGA_scaffold69381__1_contigs__length_23220 LN:23220 skipping SAM header line: @SQ SN:PGA_scaffold69388__1_contigs__length_51830 LN:51830 skipping SAM header line: @SQ SN:PGA_scaffold69389__1_contigs__length_14229 LN:14229 skipping SAM header line: @SQ SN:PGA_scaffold69391__1_contigs__length_16756 LN:16756 skipping SAM header line: @SQ SN:PGA_scaffold69398__1_contigs__length_16206 LN:16206 skipping SAM header line: @SQ SN:PGA_scaffold69400__1_contigs__length_10590 LN:10590 skipping SAM header line: @SQ SN:PGA_scaffold69413__1_contigs__length_13517 LN:13517 skipping SAM header line: @SQ SN:PGA_scaffold69421__1_contigs__length_16159 LN:16159 skipping SAM header line: @SQ SN:PGA_scaffold69423__1_contigs__length_13062 LN:13062 skipping SAM header line: @SQ SN:PGA_scaffold69425__1_contigs__length_18197 LN:18197 skipping SAM header line: @SQ SN:PGA_scaffold69426__1_contigs__length_26712 LN:26712 skipping SAM header line: @SQ SN:PGA_scaffold69431__1_contigs__length_16899 LN:16899 skipping SAM header line: @SQ SN:PGA_scaffold69432__1_contigs__length_26198 LN:26198 skipping SAM header line: @SQ SN:PGA_scaffold69435__1_contigs__length_57426 LN:57426 skipping SAM header line: @SQ SN:PGA_scaffold69439__1_contigs__length_41542 LN:41542 skipping SAM header line: @SQ SN:PGA_scaffold69444__1_contigs__length_15212 LN:15212 skipping SAM header line: @SQ SN:PGA_scaffold69445__1_contigs__length_20016 LN:20016 skipping SAM header line: @SQ SN:PGA_scaffold69451__1_contigs__length_39160 LN:39160 skipping SAM header line: @SQ SN:PGA_scaffold69453__1_contigs__length_16624 LN:16624 skipping SAM header line: @SQ SN:PGA_scaffold69454__1_contigs__length_20798 LN:20798 skipping SAM header line: @SQ SN:PGA_scaffold69455__1_contigs__length_13761 LN:13761 skipping SAM header line: @SQ SN:PGA_scaffold69458__1_contigs__length_10422 LN:10422 skipping SAM header line: @SQ SN:PGA_scaffold69459__1_contigs__length_45501 LN:45501 skipping SAM header line: @SQ SN:PGA_scaffold69470__1_contigs__length_24000 LN:24000 skipping SAM header line: @SQ SN:PGA_scaffold69472__1_contigs__length_10239 LN:10239 skipping SAM header line: @SQ SN:PGA_scaffold69477__1_contigs__length_38210 LN:38210 skipping SAM header line: @SQ SN:PGA_scaffold69479__1_contigs__length_32808 LN:32808 skipping SAM header line: @SQ SN:PGA_scaffold69481__1_contigs__length_13516 LN:13516 skipping SAM header line: @SQ SN:PGA_scaffold69483__1_contigs__length_14865 LN:14865 skipping SAM header line: @SQ SN:PGA_scaffold69484__1_contigs__length_31150 LN:31150 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69541__1_contigs__length_11604 LN:11604 skipping SAM header line: @SQ SN:PGA_scaffold69550__1_contigs__length_13388 LN:13388 skipping SAM header line: @SQ SN:PGA_scaffold69553__1_contigs__length_13615 LN:13615 skipping SAM header line: @SQ SN:PGA_scaffold69554__1_contigs__length_25920 LN:25920 skipping SAM header line: @SQ SN:PGA_scaffold69555__1_contigs__length_42966 LN:42966 skipping SAM header line: @SQ SN:PGA_scaffold69556__1_contigs__length_33961 LN:33961 skipping SAM header line: @SQ SN:PGA_scaffold69564__1_contigs__length_12813 LN:12813 skipping SAM header line: @SQ SN:PGA_scaffold69568__1_contigs__length_20857 LN:20857 skipping SAM header line: @SQ SN:PGA_scaffold69576__1_contigs__length_11501 LN:11501 skipping SAM header line: @SQ SN:PGA_scaffold69582__1_contigs__length_16387 LN:16387 skipping SAM header line: @SQ SN:PGA_scaffold69596__1_contigs__length_21217 LN:21217 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69622__1_contigs__length_37660 LN:37660 skipping SAM header line: @SQ SN:PGA_scaffold69623__1_contigs__length_13469 LN:13469 skipping SAM header line: @SQ SN:PGA_scaffold69624__1_contigs__length_12227 LN:12227 skipping SAM header line: @SQ SN:PGA_scaffold69626__1_contigs__length_23545 LN:23545 skipping SAM header line: @SQ SN:PGA_scaffold69631__1_contigs__length_44909 LN:44909 skipping SAM header line: @SQ SN:PGA_scaffold69634__1_contigs__length_12204 LN:12204 skipping SAM header line: @SQ SN:PGA_scaffold69635__1_contigs__length_12931 LN:12931 skipping SAM header line: @SQ SN:PGA_scaffold69641__1_contigs__length_13940 LN:13940 skipping SAM header line: @SQ SN:PGA_scaffold69644__1_contigs__length_27140 LN:27140 skipping SAM header line: @SQ SN:PGA_scaffold69645__1_contigs__length_46339 LN:46339 skipping SAM header line: @SQ SN:PGA_scaffold69646__1_contigs__length_13676 LN:13676 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69684__1_contigs__length_12239 LN:12239 skipping SAM header line: @SQ SN:PGA_scaffold69685__1_contigs__length_29030 LN:29030 skipping SAM header line: @SQ SN:PGA_scaffold69689__1_contigs__length_25381 LN:25381 skipping SAM header line: @SQ SN:PGA_scaffold69690__1_contigs__length_10293 LN:10293 skipping SAM header line: @SQ SN:PGA_scaffold69691__1_contigs__length_27998 LN:27998 skipping SAM header line: @SQ SN:PGA_scaffold69693__1_contigs__length_24611 LN:24611 skipping SAM header line: @SQ SN:PGA_scaffold69701__1_contigs__length_12056 LN:12056 skipping SAM header line: @SQ SN:PGA_scaffold69704__1_contigs__length_15592 LN:15592 skipping SAM header line: @SQ SN:PGA_scaffold69705__1_contigs__length_16158 LN:16158 skipping SAM header line: @SQ SN:PGA_scaffold69711__1_contigs__length_31728 LN:31728 skipping SAM header line: @SQ SN:PGA_scaffold69718__1_contigs__length_12503 LN:12503 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69749__1_contigs__length_15526 LN:15526 skipping SAM header line: @SQ SN:PGA_scaffold69750__1_contigs__length_20950 LN:20950 skipping SAM header line: @SQ SN:PGA_scaffold69752__1_contigs__length_25204 LN:25204 skipping SAM header line: @SQ SN:PGA_scaffold69754__1_contigs__length_11668 LN:11668 skipping SAM header line: @SQ SN:PGA_scaffold69757__1_contigs__length_13015 LN:13015 skipping SAM header line: @SQ SN:PGA_scaffold69766__1_contigs__length_10093 LN:10093 skipping SAM header line: @SQ SN:PGA_scaffold69767__1_contigs__length_14271 LN:14271 skipping SAM header line: @SQ SN:PGA_scaffold69769__1_contigs__length_67326 LN:67326 skipping SAM header line: @SQ SN:PGA_scaffold69772__1_contigs__length_28251 LN:28251 skipping SAM header line: @SQ SN:PGA_scaffold69777__1_contigs__length_11173 LN:11173 skipping SAM header line: @SQ SN:PGA_scaffold69780__1_contigs__length_36085 LN:36085 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69810__1_contigs__length_17927 LN:17927 skipping SAM header line: @SQ SN:PGA_scaffold69817__1_contigs__length_16482 LN:16482 skipping SAM header line: @SQ SN:PGA_scaffold69818__1_contigs__length_17331 LN:17331 skipping SAM header line: @SQ SN:PGA_scaffold69820__1_contigs__length_11208 LN:11208 skipping SAM header line: @SQ SN:PGA_scaffold69826__1_contigs__length_27192 LN:27192 skipping SAM header line: @SQ SN:PGA_scaffold69827__1_contigs__length_14106 LN:14106 skipping SAM header line: @SQ SN:PGA_scaffold69829__1_contigs__length_34810 LN:34810 skipping SAM header line: @SQ SN:PGA_scaffold69830__1_contigs__length_24232 LN:24232 skipping SAM header line: @SQ SN:PGA_scaffold69831__1_contigs__length_18481 LN:18481 skipping SAM header line: @SQ SN:PGA_scaffold69835__1_contigs__length_10896 LN:10896 skipping SAM header line: @SQ SN:PGA_scaffold69838__1_contigs__length_17950 LN:17950 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69910__1_contigs__length_13059 LN:13059 skipping SAM header line: @SQ SN:PGA_scaffold69912__1_contigs__length_19133 LN:19133 skipping SAM header line: @SQ SN:PGA_scaffold69919__1_contigs__length_20023 LN:20023 skipping SAM header line: @SQ SN:PGA_scaffold69922__1_contigs__length_19061 LN:19061 skipping SAM header line: @SQ SN:PGA_scaffold69924__1_contigs__length_44446 LN:44446 skipping SAM header line: @SQ SN:PGA_scaffold69928__1_contigs__length_10623 LN:10623 skipping SAM header line: @SQ SN:PGA_scaffold69929__1_contigs__length_17877 LN:17877 skipping SAM header line: @SQ SN:PGA_scaffold69930__1_contigs__length_16010 LN:16010 skipping SAM header line: @SQ SN:PGA_scaffold69932__1_contigs__length_11910 LN:11910 skipping SAM header line: @SQ SN:PGA_scaffold69935__1_contigs__length_32162 LN:32162 skipping SAM header line: @SQ SN:PGA_scaffold69937__1_contigs__length_17078 LN:17078 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69964__1_contigs__length_13211 LN:13211 skipping SAM header line: @SQ SN:PGA_scaffold69967__1_contigs__length_33074 LN:33074 skipping SAM header line: @SQ SN:PGA_scaffold69968__1_contigs__length_25245 LN:25245 skipping SAM header line: @SQ SN:PGA_scaffold69970__1_contigs__length_36785 LN:36785 skipping SAM header line: @SQ SN:PGA_scaffold69972__1_contigs__length_17522 LN:17522 skipping SAM header line: @SQ SN:PGA_scaffold69973__1_contigs__length_17000 LN:17000 skipping SAM header line: @SQ SN:PGA_scaffold69975__1_contigs__length_12461 LN:12461 skipping SAM header line: @SQ SN:PGA_scaffold69978__1_contigs__length_11098 LN:11098 skipping SAM header line: @SQ SN:PGA_scaffold69983__1_contigs__length_15593 LN:15593 skipping SAM header line: @SQ SN:PGA_scaffold69984__1_contigs__length_60451 LN:60451 skipping SAM header line: @SQ SN:PGA_scaffold69987__1_contigs__length_13384 LN:13384 skipping SAM header line: @SQ SN:PGA_scaffold69991__1_contigs__length_20440 LN:20440 skipping SAM header line: @SQ SN:PGA_scaffold69995__1_contigs__length_13590 LN:13590 skipping SAM header line: @SQ SN:PGA_scaffold69997__1_contigs__length_22219 LN:22219 skipping SAM header line: @SQ SN:PGA_scaffold70005__1_contigs__length_11176 LN:11176 skipping SAM header line: @SQ SN:PGA_scaffold70013__1_contigs__length_13162 LN:13162 skipping SAM header line: @SQ SN:PGA_scaffold70019__1_contigs__length_11953 LN:11953 skipping SAM header line: @SQ SN:PGA_scaffold70022__1_contigs__length_23731 LN:23731 skipping SAM header line: @SQ SN:PGA_scaffold70033__1_contigs__length_15398 LN:15398 skipping SAM header line: @SQ SN:PGA_scaffold70035__1_contigs__length_36658 LN:36658 skipping SAM header line: @SQ SN:PGA_scaffold70040__1_contigs__length_10047 LN:10047 skipping SAM header line: @SQ SN:PGA_scaffold70043__1_contigs__length_24404 LN:24404 skipping SAM header line: @SQ SN:PGA_scaffold70048__1_contigs__length_12426 LN:12426 skipping SAM header line: @SQ SN:PGA_scaffold70052__1_contigs__length_22918 LN:22918 skipping SAM header line: @SQ SN:PGA_scaffold70059__1_contigs__length_26702 LN:26702 skipping SAM header line: @SQ SN:PGA_scaffold70061__1_contigs__length_11193 LN:11193 skipping SAM header line: @SQ SN:PGA_scaffold70062__1_contigs__length_23472 LN:23472 skipping SAM header line: @SQ SN:PGA_scaffold70070__1_contigs__length_49697 LN:49697 skipping SAM header line: @SQ SN:PGA_scaffold70072__1_contigs__length_17167 LN:17167 skipping SAM header line: @SQ SN:PGA_scaffold70079__1_contigs__length_22537 LN:22537 skipping SAM header line: @SQ SN:PGA_scaffold70080__1_contigs__length_22598 LN:22598 skipping SAM header line: @SQ SN:PGA_scaffold70086__1_contigs__length_42850 LN:42850 skipping SAM header line: @SQ SN:PGA_scaffold70088__1_contigs__length_11372 LN:11372 skipping SAM header line: @SQ SN:PGA_scaffold70089__1_contigs__length_30721 LN:30721 skipping SAM header line: @SQ SN:PGA_scaffold70095__1_contigs__length_28144 LN:28144 skipping SAM header line: @SQ SN:PGA_scaffold70096__1_contigs__length_11556 LN:11556 skipping SAM header line: @SQ SN:PGA_scaffold70101__1_contigs__length_16886 LN:16886 skipping SAM header line: @SQ SN:PGA_scaffold70102__1_contigs__length_12419 LN:12419 skipping SAM header line: @SQ SN:PGA_scaffold70105__1_contigs__length_12832 LN:12832 skipping SAM header line: @SQ SN:PGA_scaffold70108__1_contigs__length_34192 LN:34192 skipping SAM header line: @SQ SN:PGA_scaffold70113__1_contigs__length_21834 LN:21834 skipping SAM header line: @SQ SN:PGA_scaffold70114__1_contigs__length_18774 LN:18774 skipping SAM header line: @SQ SN:PGA_scaffold70122__1_contigs__length_22860 LN:22860 skipping SAM header line: @SQ SN:PGA_scaffold70123__1_contigs__length_25538 LN:25538 skipping SAM header line: @SQ SN:PGA_scaffold70124__1_contigs__length_25687 LN:25687 skipping SAM header line: @SQ SN:PGA_scaffold70127__1_contigs__length_11147 LN:11147 skipping SAM header line: @SQ SN:PGA_scaffold70128__1_contigs__length_15266 LN:15266 skipping SAM header line: @SQ SN:PGA_scaffold70130__1_contigs__length_19136 LN:19136 skipping SAM header line: @SQ SN:PGA_scaffold70131__1_contigs__length_17570 LN:17570 skipping SAM header line: @SQ SN:PGA_scaffold70133__1_contigs__length_20469 LN:20469 skipping SAM header line: @SQ SN:PGA_scaffold70134__1_contigs__length_29503 LN:29503 skipping SAM header line: @SQ SN:PGA_scaffold70139__1_contigs__length_13335 LN:13335 skipping SAM header line: @SQ SN:PGA_scaffold70142__1_contigs__length_30446 LN:30446 skipping SAM header line: @SQ SN:PGA_scaffold70146__1_contigs__length_28346 LN:28346 skipping SAM header line: @SQ SN:PGA_scaffold70147__1_contigs__length_10932 LN:10932 skipping SAM header line: @SQ SN:PGA_scaffold70148__1_contigs__length_34259 LN:34259 skipping SAM header line: @SQ SN:PGA_scaffold70149__1_contigs__length_21986 LN:21986 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70196__1_contigs__length_13291 LN:13291 skipping SAM header line: @SQ SN:PGA_scaffold70197__1_contigs__length_58642 LN:58642 skipping SAM header line: @SQ SN:PGA_scaffold70200__1_contigs__length_22714 LN:22714 skipping SAM header line: @SQ SN:PGA_scaffold70201__1_contigs__length_11550 LN:11550 skipping SAM header line: @SQ SN:PGA_scaffold70203__1_contigs__length_10505 LN:10505 skipping SAM header line: @SQ SN:PGA_scaffold70204__1_contigs__length_36625 LN:36625 skipping SAM header line: @SQ SN:PGA_scaffold70212__1_contigs__length_17146 LN:17146 skipping SAM header line: @SQ SN:PGA_scaffold70214__1_contigs__length_20196 LN:20196 skipping SAM header line: @SQ SN:PGA_scaffold70218__1_contigs__length_31585 LN:31585 skipping SAM header line: @SQ SN:PGA_scaffold70219__1_contigs__length_11824 LN:11824 skipping SAM header line: @SQ SN:PGA_scaffold70225__1_contigs__length_12243 LN:12243 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70272__1_contigs__length_16518 LN:16518 skipping SAM header line: @SQ SN:PGA_scaffold70273__1_contigs__length_10088 LN:10088 skipping SAM header line: @SQ SN:PGA_scaffold70281__1_contigs__length_17105 LN:17105 skipping SAM header line: @SQ SN:PGA_scaffold70283__1_contigs__length_28907 LN:28907 skipping SAM header line: @SQ SN:PGA_scaffold70287__1_contigs__length_50534 LN:50534 skipping SAM header line: @SQ SN:PGA_scaffold70288__1_contigs__length_23606 LN:23606 skipping SAM header line: @SQ SN:PGA_scaffold70295__1_contigs__length_17893 LN:17893 skipping SAM header line: @SQ SN:PGA_scaffold70297__1_contigs__length_13250 LN:13250 skipping SAM header line: @SQ SN:PGA_scaffold70301__1_contigs__length_33670 LN:33670 skipping SAM header line: @SQ SN:PGA_scaffold70316__1_contigs__length_10082 LN:10082 skipping SAM header line: @SQ SN:PGA_scaffold70322__1_contigs__length_11693 LN:11693 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70366__1_contigs__length_18640 LN:18640 skipping SAM header line: @SQ SN:PGA_scaffold70368__1_contigs__length_27911 LN:27911 skipping SAM header line: @SQ SN:PGA_scaffold70370__1_contigs__length_23691 LN:23691 skipping SAM header line: @SQ SN:PGA_scaffold70371__1_contigs__length_15985 LN:15985 skipping SAM header line: @SQ SN:PGA_scaffold70375__1_contigs__length_17922 LN:17922 skipping SAM header line: @SQ SN:PGA_scaffold70383__1_contigs__length_13250 LN:13250 skipping SAM header line: @SQ SN:PGA_scaffold70385__1_contigs__length_19438 LN:19438 skipping SAM header line: @SQ SN:PGA_scaffold70390__1_contigs__length_14784 LN:14784 skipping SAM header line: @SQ SN:PGA_scaffold70396__1_contigs__length_10129 LN:10129 skipping SAM header line: @SQ SN:PGA_scaffold70402__1_contigs__length_15466 LN:15466 skipping SAM header line: @SQ SN:PGA_scaffold70409__1_contigs__length_30379 LN:30379 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70532__1_contigs__length_10801 LN:10801 skipping SAM header line: @SQ SN:PGA_scaffold70533__1_contigs__length_26547 LN:26547 skipping SAM header line: @SQ SN:PGA_scaffold70534__1_contigs__length_18255 LN:18255 skipping SAM header line: @SQ SN:PGA_scaffold70535__1_contigs__length_26427 LN:26427 skipping SAM header line: @SQ SN:PGA_scaffold70541__1_contigs__length_14321 LN:14321 skipping SAM header line: @SQ SN:PGA_scaffold70543__1_contigs__length_23174 LN:23174 skipping SAM header line: @SQ SN:PGA_scaffold70546__1_contigs__length_14031 LN:14031 skipping SAM header line: @SQ SN:PGA_scaffold70549__1_contigs__length_17268 LN:17268 skipping SAM header line: @SQ SN:PGA_scaffold70550__1_contigs__length_11747 LN:11747 skipping SAM header line: @SQ SN:PGA_scaffold70553__1_contigs__length_17810 LN:17810 skipping SAM header line: @SQ SN:PGA_scaffold70554__1_contigs__length_16333 LN:16333 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70597__1_contigs__length_32895 LN:32895 skipping SAM header line: @SQ SN:PGA_scaffold70601__1_contigs__length_11910 LN:11910 skipping SAM header line: @SQ SN:PGA_scaffold70603__1_contigs__length_11417 LN:11417 skipping SAM header line: @SQ SN:PGA_scaffold70605__1_contigs__length_25355 LN:25355 skipping SAM header line: @SQ SN:PGA_scaffold70612__1_contigs__length_11139 LN:11139 skipping SAM header line: @SQ SN:PGA_scaffold70614__1_contigs__length_13905 LN:13905 skipping SAM header line: @SQ SN:PGA_scaffold70621__1_contigs__length_11716 LN:11716 skipping SAM header line: @SQ SN:PGA_scaffold70628__1_contigs__length_97563 LN:97563 skipping SAM header line: @SQ SN:PGA_scaffold70629__1_contigs__length_23304 LN:23304 skipping SAM header line: @SQ SN:PGA_scaffold70631__1_contigs__length_11559 LN:11559 skipping SAM header line: @SQ SN:PGA_scaffold70637__1_contigs__length_38808 LN:38808 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70674__1_contigs__length_15203 LN:15203 skipping SAM header line: @SQ SN:PGA_scaffold70675__1_contigs__length_22236 LN:22236 skipping SAM header line: @SQ SN:PGA_scaffold70677__1_contigs__length_20686 LN:20686 skipping SAM header line: @SQ SN:PGA_scaffold70686__1_contigs__length_12840 LN:12840 skipping SAM header line: @SQ SN:PGA_scaffold70687__1_contigs__length_14711 LN:14711 skipping SAM header line: @SQ SN:PGA_scaffold70688__1_contigs__length_23372 LN:23372 skipping SAM header line: @SQ SN:PGA_scaffold70695__1_contigs__length_28073 LN:28073 skipping SAM header line: @SQ SN:PGA_scaffold70705__1_contigs__length_21719 LN:21719 skipping SAM header line: @SQ SN:PGA_scaffold70713__1_contigs__length_25758 LN:25758 skipping SAM header line: @SQ SN:PGA_scaffold70715__1_contigs__length_12368 LN:12368 skipping SAM header line: @SQ SN:PGA_scaffold70722__1_contigs__length_11368 LN:11368 skipping SAM header line: @SQ SN:PGA_scaffold70723__1_contigs__length_11534 LN:11534 skipping SAM header line: @SQ SN:PGA_scaffold70724__1_contigs__length_17079 LN:17079 skipping SAM header line: @SQ SN:PGA_scaffold70734__1_contigs__length_17773 LN:17773 skipping SAM header line: @SQ SN:PGA_scaffold70735__1_contigs__length_10722 LN:10722 skipping SAM header line: @SQ SN:PGA_scaffold70740__1_contigs__length_14421 LN:14421 skipping SAM header line: @SQ SN:PGA_scaffold70742__1_contigs__length_19309 LN:19309 skipping SAM header line: @SQ SN:PGA_scaffold70744__1_contigs__length_41353 LN:41353 skipping SAM header line: @SQ SN:PGA_scaffold70751__1_contigs__length_35732 LN:35732 skipping SAM header line: @SQ SN:PGA_scaffold70757__1_contigs__length_17735 LN:17735 skipping SAM header line: @SQ SN:PGA_scaffold70760__1_contigs__length_23654 LN:23654 skipping SAM header line: @SQ SN:PGA_scaffold70764__1_contigs__length_22987 LN:22987 skipping SAM header line: @SQ SN:PGA_scaffold70770__1_contigs__length_37647 LN:37647 skipping SAM header line: @SQ SN:PGA_scaffold70773__1_contigs__length_28647 LN:28647 skipping SAM header line: @SQ SN:PGA_scaffold70775__1_contigs__length_20175 LN:20175 skipping SAM header line: @SQ SN:PGA_scaffold70776__1_contigs__length_28075 LN:28075 skipping SAM header line: @SQ SN:PGA_scaffold70777__1_contigs__length_20118 LN:20118 skipping SAM header line: @SQ SN:PGA_scaffold70782__1_contigs__length_18059 LN:18059 skipping SAM header line: @SQ SN:PGA_scaffold70784__1_contigs__length_14789 LN:14789 skipping SAM header line: @SQ SN:PGA_scaffold70785__1_contigs__length_35848 LN:35848 skipping SAM header line: @SQ SN:PGA_scaffold70788__1_contigs__length_34232 LN:34232 skipping SAM header line: @SQ SN:PGA_scaffold70791__1_contigs__length_36664 LN:36664 skipping SAM header line: @SQ SN:PGA_scaffold70792__1_contigs__length_20308 LN:20308 skipping SAM header line: @SQ SN:PGA_scaffold70793__1_contigs__length_31797 LN:31797 skipping SAM header line: @SQ SN:PGA_scaffold70795__1_contigs__length_35890 LN:35890 skipping SAM header line: @SQ SN:PGA_scaffold70796__1_contigs__length_10544 LN:10544 skipping SAM header line: @SQ SN:PGA_scaffold70797__1_contigs__length_14275 LN:14275 skipping SAM header line: @SQ SN:PGA_scaffold70798__1_contigs__length_29751 LN:29751 skipping SAM header line: @SQ SN:PGA_scaffold70803__1_contigs__length_13151 LN:13151 skipping SAM header line: @SQ SN:PGA_scaffold70809__1_contigs__length_27843 LN:27843 skipping SAM header line: @SQ SN:PGA_scaffold70813__1_contigs__length_13480 LN:13480 skipping SAM header line: @SQ SN:PGA_scaffold70814__1_contigs__length_47056 LN:47056 skipping SAM header line: @SQ SN:PGA_scaffold70819__1_contigs__length_11431 LN:11431 skipping SAM header line: @SQ SN:PGA_scaffold70825__1_contigs__length_27449 LN:27449 skipping SAM header line: @SQ SN:PGA_scaffold70828__1_contigs__length_11986 LN:11986 skipping SAM header line: @SQ SN:PGA_scaffold70833__1_contigs__length_11448 LN:11448 skipping SAM header line: @SQ SN:PGA_scaffold70834__1_contigs__length_16861 LN:16861 skipping SAM header line: @SQ SN:PGA_scaffold70836__1_contigs__length_11225 LN:11225 skipping SAM header line: @SQ SN:PGA_scaffold70837__1_contigs__length_33454 LN:33454 skipping SAM header line: @SQ SN:PGA_scaffold70838__1_contigs__length_25020 LN:25020 skipping SAM header line: @SQ SN:PGA_scaffold70839__1_contigs__length_41296 LN:41296 skipping SAM header line: @SQ SN:PGA_scaffold70842__1_contigs__length_17525 LN:17525 skipping SAM header line: @SQ SN:PGA_scaffold70845__1_contigs__length_21348 LN:21348 skipping SAM header line: @SQ SN:PGA_scaffold70848__1_contigs__length_12973 LN:12973 skipping SAM header line: @SQ SN:PGA_scaffold70849__1_contigs__length_10528 LN:10528 skipping SAM header line: @SQ SN:PGA_scaffold70857__1_contigs__length_18611 LN:18611 skipping SAM header line: @SQ SN:PGA_scaffold70859__1_contigs__length_10095 LN:10095 skipping SAM header line: @SQ SN:PGA_scaffold70860__1_contigs__length_14111 LN:14111 skipping SAM header line: @SQ SN:PGA_scaffold70866__1_contigs__length_29645 LN:29645 skipping SAM header line: @SQ SN:PGA_scaffold70867__1_contigs__length_12408 LN:12408 skipping SAM header line: @SQ SN:PGA_scaffold70870__1_contigs__length_21470 LN:21470 skipping SAM header line: @SQ SN:PGA_scaffold70872__1_contigs__length_10613 LN:10613 skipping SAM header line: @SQ SN:PGA_scaffold70880__1_contigs__length_31372 LN:31372 skipping SAM header line: @SQ SN:PGA_scaffold70883__1_contigs__length_14415 LN:14415 skipping SAM header line: @SQ SN:PGA_scaffold70885__1_contigs__length_19223 LN:19223 skipping SAM header line: @SQ SN:PGA_scaffold70887__1_contigs__length_21926 LN:21926 skipping SAM header line: @SQ SN:PGA_scaffold70894__1_contigs__length_47158 LN:47158 skipping SAM header line: @SQ SN:PGA_scaffold70897__1_contigs__length_11305 LN:11305 skipping SAM header line: @SQ SN:PGA_scaffold70898__1_contigs__length_16866 LN:16866 skipping SAM header line: @SQ SN:PGA_scaffold70899__1_contigs__length_25973 LN:25973 skipping SAM header line: @SQ SN:PGA_scaffold70901__1_contigs__length_16846 LN:16846 skipping SAM header line: @SQ SN:PGA_scaffold70902__1_contigs__length_11767 LN:11767 skipping SAM header line: @SQ SN:PGA_scaffold70905__1_contigs__length_18859 LN:18859 skipping SAM header line: @SQ SN:PGA_scaffold70911__1_contigs__length_31781 LN:31781 skipping SAM header line: @SQ SN:PGA_scaffold70913__1_contigs__length_15872 LN:15872 skipping SAM header line: @SQ SN:PGA_scaffold70914__1_contigs__length_22820 LN:22820 skipping SAM header line: @SQ SN:PGA_scaffold70918__1_contigs__length_10696 LN:10696 skipping SAM header line: @SQ SN:PGA_scaffold70919__1_contigs__length_35080 LN:35080 skipping SAM header line: @SQ SN:PGA_scaffold70921__1_contigs__length_17938 LN:17938 skipping SAM header line: @SQ SN:PGA_scaffold70928__1_contigs__length_14035 LN:14035 skipping SAM header line: @SQ SN:PGA_scaffold70939__1_contigs__length_14461 LN:14461 skipping SAM header line: @SQ SN:PGA_scaffold70942__1_contigs__length_24717 LN:24717 skipping SAM header line: @SQ SN:PGA_scaffold70944__1_contigs__length_17097 LN:17097 skipping SAM header line: @SQ SN:PGA_scaffold70946__1_contigs__length_21458 LN:21458 skipping SAM header line: @SQ SN:PGA_scaffold70948__1_contigs__length_25922 LN:25922 skipping SAM header line: @SQ SN:PGA_scaffold70949__1_contigs__length_19537 LN:19537 skipping SAM header line: @SQ SN:PGA_scaffold70952__1_contigs__length_24369 LN:24369 skipping SAM header line: @SQ SN:PGA_scaffold70954__1_contigs__length_22680 LN:22680 skipping SAM header line: @SQ SN:PGA_scaffold70956__1_contigs__length_15489 LN:15489 skipping SAM header line: @SQ SN:PGA_scaffold70959__1_contigs__length_23627 LN:23627 skipping SAM header line: @SQ SN:PGA_scaffold70961__1_contigs__length_23243 LN:23243 skipping SAM header line: @SQ SN:PGA_scaffold70963__1_contigs__length_14513 LN:14513 skipping SAM header line: @SQ SN:PGA_scaffold70965__1_contigs__length_13956 LN:13956 skipping SAM header line: @SQ SN:PGA_scaffold70967__1_contigs__length_30258 LN:30258 skipping SAM header line: @SQ SN:PGA_scaffold70968__1_contigs__length_18043 LN:18043 skipping SAM header line: @SQ SN:PGA_scaffold70971__1_contigs__length_12897 LN:12897 skipping SAM header line: @SQ SN:PGA_scaffold70972__1_contigs__length_11682 LN:11682 skipping SAM header line: @SQ SN:PGA_scaffold70976__1_contigs__length_21211 LN:21211 skipping SAM header line: @SQ SN:PGA_scaffold70990__1_contigs__length_44272 LN:44272 skipping SAM header line: @SQ SN:PGA_scaffold70991__1_contigs__length_13562 LN:13562 skipping SAM header line: @SQ SN:PGA_scaffold70996__1_contigs__length_11183 LN:11183 skipping SAM header line: @SQ SN:PGA_scaffold70997__1_contigs__length_29986 LN:29986 skipping SAM header line: @SQ SN:PGA_scaffold70998__1_contigs__length_17381 LN:17381 skipping SAM header line: @SQ SN:PGA_scaffold71002__1_contigs__length_20336 LN:20336 skipping SAM header line: @SQ SN:PGA_scaffold71003__1_contigs__length_32258 LN:32258 skipping SAM header line: @SQ SN:PGA_scaffold71005__1_contigs__length_18522 LN:18522 skipping SAM header line: @SQ SN:PGA_scaffold71009__1_contigs__length_26173 LN:26173 skipping SAM header line: @SQ SN:PGA_scaffold71010__1_contigs__length_22490 LN:22490 skipping SAM header line: @SQ SN:PGA_scaffold71016__1_contigs__length_52719 LN:52719 skipping SAM header line: @SQ SN:PGA_scaffold71017__1_contigs__length_12630 LN:12630 skipping SAM header line: @SQ SN:PGA_scaffold71021__1_contigs__length_14054 LN:14054 skipping SAM header line: @SQ SN:PGA_scaffold71023__1_contigs__length_42297 LN:42297 skipping SAM header line: @SQ SN:PGA_scaffold71024__1_contigs__length_37906 LN:37906 skipping SAM header line: @SQ SN:PGA_scaffold71026__1_contigs__length_10239 LN:10239 skipping SAM header line: @SQ SN:PGA_scaffold71031__1_contigs__length_10904 LN:10904 skipping SAM header line: @SQ SN:PGA_scaffold71032__1_contigs__length_13197 LN:13197 skipping SAM header line: @SQ SN:PGA_scaffold71036__1_contigs__length_15091 LN:15091 skipping SAM header line: @SQ SN:PGA_scaffold71037__1_contigs__length_17753 LN:17753 skipping SAM header line: @SQ SN:PGA_scaffold71038__1_contigs__length_13384 LN:13384 skipping SAM header line: @SQ SN:PGA_scaffold71040__1_contigs__length_23169 LN:23169 skipping SAM header line: @SQ SN:PGA_scaffold71041__1_contigs__length_15299 LN:15299 skipping SAM header line: @SQ SN:PGA_scaffold71044__1_contigs__length_12167 LN:12167 skipping SAM header line: @SQ SN:PGA_scaffold71047__1_contigs__length_18967 LN:18967 skipping SAM header line: @SQ SN:PGA_scaffold71051__1_contigs__length_23131 LN:23131 skipping SAM header line: @SQ SN:PGA_scaffold71052__1_contigs__length_11922 LN:11922 skipping SAM header line: @SQ SN:PGA_scaffold71053__1_contigs__length_27241 LN:27241 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71091__1_contigs__length_33646 LN:33646 skipping SAM header line: @SQ SN:PGA_scaffold71094__1_contigs__length_16149 LN:16149 skipping SAM header line: @SQ SN:PGA_scaffold71098__1_contigs__length_13835 LN:13835 skipping SAM header line: @SQ SN:PGA_scaffold71102__1_contigs__length_24207 LN:24207 skipping SAM header line: @SQ SN:PGA_scaffold71103__1_contigs__length_26141 LN:26141 skipping SAM header line: @SQ SN:PGA_scaffold71104__1_contigs__length_18381 LN:18381 skipping SAM header line: @SQ SN:PGA_scaffold71105__1_contigs__length_14810 LN:14810 skipping SAM header line: @SQ SN:PGA_scaffold71107__1_contigs__length_22081 LN:22081 skipping SAM header line: @SQ SN:PGA_scaffold71111__1_contigs__length_27750 LN:27750 skipping SAM header line: @SQ SN:PGA_scaffold71114__1_contigs__length_18460 LN:18460 skipping SAM header line: @SQ SN:PGA_scaffold71117__1_contigs__length_14606 LN:14606 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71159__1_contigs__length_13167 LN:13167 skipping SAM header line: @SQ SN:PGA_scaffold71160__1_contigs__length_15059 LN:15059 skipping SAM header line: @SQ SN:PGA_scaffold71164__1_contigs__length_15329 LN:15329 skipping SAM header line: @SQ SN:PGA_scaffold71167__1_contigs__length_10322 LN:10322 skipping SAM header line: @SQ SN:PGA_scaffold71168__1_contigs__length_27873 LN:27873 skipping SAM header line: @SQ SN:PGA_scaffold71171__1_contigs__length_21406 LN:21406 skipping SAM header line: @SQ SN:PGA_scaffold71172__1_contigs__length_22069 LN:22069 skipping SAM header line: @SQ SN:PGA_scaffold71177__1_contigs__length_13358 LN:13358 skipping SAM header line: @SQ SN:PGA_scaffold71179__1_contigs__length_10169 LN:10169 skipping SAM header line: @SQ SN:PGA_scaffold71182__1_contigs__length_10472 LN:10472 skipping SAM header line: @SQ SN:PGA_scaffold71187__1_contigs__length_11367 LN:11367 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71224__1_contigs__length_17631 LN:17631 skipping SAM header line: @SQ SN:PGA_scaffold71232__1_contigs__length_34336 LN:34336 skipping SAM header line: @SQ SN:PGA_scaffold71233__1_contigs__length_13104 LN:13104 skipping SAM header line: @SQ SN:PGA_scaffold71242__1_contigs__length_41800 LN:41800 skipping SAM header line: @SQ SN:PGA_scaffold71250__1_contigs__length_10262 LN:10262 skipping SAM header line: @SQ SN:PGA_scaffold71254__1_contigs__length_14505 LN:14505 skipping SAM header line: @SQ SN:PGA_scaffold71259__1_contigs__length_21342 LN:21342 skipping SAM header line: @SQ SN:PGA_scaffold71267__1_contigs__length_28487 LN:28487 skipping SAM header line: @SQ SN:PGA_scaffold71269__1_contigs__length_10506 LN:10506 skipping SAM header line: @SQ SN:PGA_scaffold71274__1_contigs__length_40536 LN:40536 skipping SAM header line: @SQ SN:PGA_scaffold71277__1_contigs__length_12658 LN:12658 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71319__1_contigs__length_16956 LN:16956 skipping SAM header line: @SQ SN:PGA_scaffold71321__1_contigs__length_24320 LN:24320 skipping SAM header line: @SQ SN:PGA_scaffold71329__1_contigs__length_10043 LN:10043 skipping SAM header line: @SQ SN:PGA_scaffold71330__1_contigs__length_14114 LN:14114 skipping SAM header line: @SQ SN:PGA_scaffold71339__1_contigs__length_31076 LN:31076 skipping SAM header line: @SQ SN:PGA_scaffold71341__1_contigs__length_20560 LN:20560 skipping SAM header line: @SQ SN:PGA_scaffold71346__1_contigs__length_42813 LN:42813 skipping SAM header line: @SQ SN:PGA_scaffold71347__1_contigs__length_19551 LN:19551 skipping SAM header line: @SQ SN:PGA_scaffold71351__1_contigs__length_13906 LN:13906 skipping SAM header line: @SQ SN:PGA_scaffold71352__1_contigs__length_24380 LN:24380 skipping SAM header line: @SQ SN:PGA_scaffold71357__1_contigs__length_16993 LN:16993 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71422__1_contigs__length_21375 LN:21375 skipping SAM header line: @SQ SN:PGA_scaffold71424__1_contigs__length_10310 LN:10310 skipping SAM header line: @SQ SN:PGA_scaffold71428__1_contigs__length_15675 LN:15675 skipping SAM header line: @SQ SN:PGA_scaffold71429__1_contigs__length_10100 LN:10100 skipping SAM header line: @SQ SN:PGA_scaffold71439__1_contigs__length_17437 LN:17437 skipping SAM header line: @SQ SN:PGA_scaffold71443__1_contigs__length_10497 LN:10497 skipping SAM header line: @SQ SN:PGA_scaffold71444__1_contigs__length_12169 LN:12169 skipping SAM header line: @SQ SN:PGA_scaffold71453__1_contigs__length_16930 LN:16930 skipping SAM header line: @SQ SN:PGA_scaffold71455__1_contigs__length_57134 LN:57134 skipping SAM header line: @SQ SN:PGA_scaffold71456__1_contigs__length_21591 LN:21591 skipping SAM header line: @SQ SN:PGA_scaffold71463__1_contigs__length_12793 LN:12793 skipping SAM header line: @SQ SN:PGA_scaffold71465__1_contigs__length_22365 LN:22365 skipping SAM header line: @SQ SN:PGA_scaffold71466__1_contigs__length_26568 LN:26568 skipping SAM header line: @SQ SN:PGA_scaffold71476__1_contigs__length_10813 LN:10813 skipping SAM header line: @SQ SN:PGA_scaffold71477__1_contigs__length_29106 LN:29106 skipping SAM header line: @SQ SN:PGA_scaffold71481__1_contigs__length_13487 LN:13487 skipping SAM header line: @SQ SN:PGA_scaffold71488__1_contigs__length_33569 LN:33569 skipping SAM header line: @SQ SN:PGA_scaffold71490__1_contigs__length_19511 LN:19511 skipping SAM header line: @SQ SN:PGA_scaffold71494__1_contigs__length_14108 LN:14108 skipping SAM header line: @SQ SN:PGA_scaffold71499__1_contigs__length_20944 LN:20944 skipping SAM header line: @SQ SN:PGA_scaffold71500__1_contigs__length_18950 LN:18950 skipping SAM header line: @SQ SN:PGA_scaffold71510__1_contigs__length_10583 LN:10583 skipping SAM header line: @SQ SN:PGA_scaffold71511__1_contigs__length_17009 LN:17009 skipping SAM header line: @SQ SN:PGA_scaffold71515__1_contigs__length_12184 LN:12184 skipping SAM header line: @SQ SN:PGA_scaffold71519__1_contigs__length_17257 LN:17257 skipping SAM header line: @SQ SN:PGA_scaffold71520__1_contigs__length_33829 LN:33829 skipping SAM header line: @SQ SN:PGA_scaffold71526__1_contigs__length_11944 LN:11944 skipping SAM header line: @SQ SN:PGA_scaffold71527__1_contigs__length_11619 LN:11619 skipping SAM header line: @SQ SN:PGA_scaffold71528__1_contigs__length_39316 LN:39316 skipping SAM header line: @SQ SN:PGA_scaffold71531__1_contigs__length_14810 LN:14810 skipping SAM header line: @SQ SN:PGA_scaffold71532__1_contigs__length_14594 LN:14594 skipping SAM header line: @SQ SN:PGA_scaffold71536__1_contigs__length_20871 LN:20871 skipping SAM header line: @SQ SN:PGA_scaffold71542__1_contigs__length_26523 LN:26523 skipping SAM header line: @SQ SN:PGA_scaffold71545__1_contigs__length_25677 LN:25677 skipping SAM header line: @SQ SN:PGA_scaffold71546__1_contigs__length_21823 LN:21823 skipping SAM header line: @SQ SN:PGA_scaffold71549__1_contigs__length_10688 LN:10688 skipping SAM header line: @SQ SN:PGA_scaffold71553__1_contigs__length_18478 LN:18478 skipping SAM header line: @SQ SN:PGA_scaffold71554__1_contigs__length_29532 LN:29532 skipping SAM header line: @SQ SN:PGA_scaffold71558__1_contigs__length_10954 LN:10954 skipping SAM header line: @SQ SN:PGA_scaffold71563__1_contigs__length_24371 LN:24371 skipping SAM header line: @SQ SN:PGA_scaffold71565__1_contigs__length_27972 LN:27972 skipping SAM header line: @SQ SN:PGA_scaffold71574__1_contigs__length_11103 LN:11103 skipping SAM header line: @SQ SN:PGA_scaffold71579__1_contigs__length_45677 LN:45677 skipping SAM header line: @SQ SN:PGA_scaffold71580__1_contigs__length_12080 LN:12080 skipping SAM header line: @SQ SN:PGA_scaffold71585__1_contigs__length_19257 LN:19257 skipping SAM header line: @SQ SN:PGA_scaffold71586__1_contigs__length_11253 LN:11253 skipping SAM header line: @SQ SN:PGA_scaffold71591__1_contigs__length_21903 LN:21903 skipping SAM header line: @SQ SN:PGA_scaffold71592__1_contigs__length_23259 LN:23259 skipping SAM header line: @SQ SN:PGA_scaffold71600__1_contigs__length_29560 LN:29560 skipping SAM header line: @SQ SN:PGA_scaffold71601__1_contigs__length_14244 LN:14244 skipping SAM header line: @SQ SN:PGA_scaffold71603__1_contigs__length_20365 LN:20365 skipping SAM header line: @SQ SN:PGA_scaffold71605__1_contigs__length_16431 LN:16431 skipping SAM header line: @SQ SN:PGA_scaffold71607__1_contigs__length_11218 LN:11218 skipping SAM header line: @SQ SN:PGA_scaffold71609__1_contigs__length_13975 LN:13975 skipping SAM header line: @SQ SN:PGA_scaffold71615__1_contigs__length_27719 LN:27719 skipping SAM header line: @SQ SN:PGA_scaffold71617__1_contigs__length_12858 LN:12858 skipping SAM header line: @SQ SN:PGA_scaffold71619__1_contigs__length_10126 LN:10126 skipping SAM header line: @SQ SN:PGA_scaffold71622__1_contigs__length_20668 LN:20668 skipping SAM header line: @SQ SN:PGA_scaffold71626__1_contigs__length_14377 LN:14377 skipping SAM header line: @SQ SN:PGA_scaffold71627__1_contigs__length_19812 LN:19812 skipping SAM header line: @SQ SN:PGA_scaffold71630__1_contigs__length_17292 LN:17292 skipping SAM header line: @SQ SN:PGA_scaffold71631__1_contigs__length_23529 LN:23529 skipping SAM header line: @SQ SN:PGA_scaffold71639__1_contigs__length_32497 LN:32497 skipping SAM header line: @SQ SN:PGA_scaffold71646__1_contigs__length_11867 LN:11867 skipping SAM header line: @SQ SN:PGA_scaffold71648__1_contigs__length_17146 LN:17146 skipping SAM header line: @SQ SN:PGA_scaffold71650__1_contigs__length_13035 LN:13035 skipping SAM header line: @SQ SN:PGA_scaffold71651__1_contigs__length_22580 LN:22580 skipping SAM header line: @SQ SN:PGA_scaffold71653__1_contigs__length_14325 LN:14325 skipping SAM header line: @SQ SN:PGA_scaffold71654__1_contigs__length_13646 LN:13646 skipping SAM header line: @SQ SN:PGA_scaffold71655__1_contigs__length_12122 LN:12122 skipping SAM header line: @SQ SN:PGA_scaffold71656__1_contigs__length_30617 LN:30617 skipping SAM header line: @SQ SN:PGA_scaffold71658__1_contigs__length_25532 LN:25532 skipping SAM header line: @SQ SN:PGA_scaffold71660__1_contigs__length_43947 LN:43947 skipping SAM header line: @SQ SN:PGA_scaffold71661__1_contigs__length_21079 LN:21079 skipping SAM header line: @SQ SN:PGA_scaffold71667__1_contigs__length_13318 LN:13318 skipping SAM header line: @SQ SN:PGA_scaffold71671__1_contigs__length_34003 LN:34003 skipping SAM header line: @SQ SN:PGA_scaffold71677__1_contigs__length_19803 LN:19803 skipping SAM header line: @SQ SN:PGA_scaffold71683__1_contigs__length_10943 LN:10943 skipping SAM header line: @SQ SN:PGA_scaffold71685__1_contigs__length_12889 LN:12889 skipping SAM header line: @SQ SN:PGA_scaffold71686__1_contigs__length_54590 LN:54590 skipping SAM header line: @SQ SN:PGA_scaffold71691__1_contigs__length_12567 LN:12567 skipping SAM header line: @SQ SN:PGA_scaffold71693__1_contigs__length_16375 LN:16375 skipping SAM header line: @SQ SN:PGA_scaffold71700__1_contigs__length_34568 LN:34568 skipping SAM header line: @SQ SN:PGA_scaffold71701__1_contigs__length_21280 LN:21280 skipping SAM header line: @SQ SN:PGA_scaffold71702__1_contigs__length_15587 LN:15587 skipping SAM header line: @SQ SN:PGA_scaffold71704__1_contigs__length_10040 LN:10040 skipping SAM header line: @SQ SN:PGA_scaffold71705__1_contigs__length_48045 LN:48045 skipping SAM header line: @SQ SN:PGA_scaffold71710__1_contigs__length_40502 LN:40502 skipping SAM header line: @SQ SN:PGA_scaffold71712__1_contigs__length_10324 LN:10324 skipping SAM header line: @SQ SN:PGA_scaffold71714__1_contigs__length_11986 LN:11986 skipping SAM header line: @SQ SN:PGA_scaffold71715__1_contigs__length_18937 LN:18937 skipping SAM header line: @SQ SN:PGA_scaffold71716__1_contigs__length_11894 LN:11894 skipping SAM header line: @SQ SN:PGA_scaffold71721__1_contigs__length_13788 LN:13788 skipping SAM header line: @SQ SN:PGA_scaffold71723__1_contigs__length_10663 LN:10663 skipping SAM header line: @SQ SN:PGA_scaffold71729__1_contigs__length_12957 LN:12957 skipping SAM header line: @SQ SN:PGA_scaffold71743__1_contigs__length_12799 LN:12799 skipping SAM header line: @SQ SN:PGA_scaffold71744__1_contigs__length_27557 LN:27557 skipping SAM header line: @SQ SN:PGA_scaffold71746__1_contigs__length_17263 LN:17263 skipping SAM header line: @SQ SN:PGA_scaffold71752__1_contigs__length_21489 LN:21489 skipping SAM header line: @SQ SN:PGA_scaffold71754__1_contigs__length_12589 LN:12589 skipping SAM header line: @SQ SN:PGA_scaffold71755__1_contigs__length_38511 LN:38511 skipping SAM header line: @SQ SN:PGA_scaffold71759__1_contigs__length_10395 LN:10395 skipping SAM header line: @SQ SN:PGA_scaffold71762__1_contigs__length_15775 LN:15775 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71811__1_contigs__length_63968 LN:63968 skipping SAM header line: @SQ SN:PGA_scaffold71812__1_contigs__length_28919 LN:28919 skipping SAM header line: @SQ SN:PGA_scaffold71815__1_contigs__length_10138 LN:10138 skipping SAM header line: @SQ SN:PGA_scaffold71816__1_contigs__length_15989 LN:15989 skipping SAM header line: @SQ SN:PGA_scaffold71825__1_contigs__length_11013 LN:11013 skipping SAM header line: @SQ SN:PGA_scaffold71828__1_contigs__length_18508 LN:18508 skipping SAM header line: @SQ SN:PGA_scaffold71834__1_contigs__length_41452 LN:41452 skipping SAM header line: @SQ SN:PGA_scaffold71841__1_contigs__length_19348 LN:19348 skipping SAM header line: @SQ SN:PGA_scaffold71848__1_contigs__length_16760 LN:16760 skipping SAM header line: @SQ SN:PGA_scaffold71849__1_contigs__length_11165 LN:11165 skipping SAM header line: @SQ SN:PGA_scaffold71850__1_contigs__length_15924 LN:15924 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71888__1_contigs__length_24395 LN:24395 skipping SAM header line: @SQ SN:PGA_scaffold71890__1_contigs__length_10222 LN:10222 skipping SAM header line: @SQ SN:PGA_scaffold71891__1_contigs__length_32235 LN:32235 skipping SAM header line: @SQ SN:PGA_scaffold71897__1_contigs__length_31037 LN:31037 skipping SAM header line: @SQ SN:PGA_scaffold71898__1_contigs__length_11786 LN:11786 skipping SAM header line: @SQ SN:PGA_scaffold71900__1_contigs__length_18534 LN:18534 skipping SAM header line: @SQ SN:PGA_scaffold71902__1_contigs__length_12828 LN:12828 skipping SAM header line: @SQ SN:PGA_scaffold71903__1_contigs__length_13441 LN:13441 skipping SAM header line: @SQ SN:PGA_scaffold71908__1_contigs__length_21329 LN:21329 skipping SAM header line: @SQ SN:PGA_scaffold71912__1_contigs__length_30188 LN:30188 skipping SAM header line: @SQ SN:PGA_scaffold71917__1_contigs__length_23422 LN:23422 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71961__1_contigs__length_16371 LN:16371 skipping SAM header line: @SQ SN:PGA_scaffold71973__1_contigs__length_21536 LN:21536 skipping SAM header line: @SQ SN:PGA_scaffold71974__1_contigs__length_19382 LN:19382 skipping SAM header line: @SQ SN:PGA_scaffold71979__1_contigs__length_15553 LN:15553 skipping SAM header line: @SQ SN:PGA_scaffold71983__1_contigs__length_15271 LN:15271 skipping SAM header line: @SQ SN:PGA_scaffold71985__1_contigs__length_10992 LN:10992 skipping SAM header line: @SQ SN:PGA_scaffold71993__1_contigs__length_39379 LN:39379 skipping SAM header line: @SQ SN:PGA_scaffold71995__1_contigs__length_18438 LN:18438 skipping SAM header line: @SQ SN:PGA_scaffold72007__1_contigs__length_17993 LN:17993 skipping SAM header line: @SQ SN:PGA_scaffold72010__1_contigs__length_13717 LN:13717 skipping SAM header line: @SQ SN:PGA_scaffold72019__1_contigs__length_13265 LN:13265 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72066__1_contigs__length_26791 LN:26791 skipping SAM header line: @SQ SN:PGA_scaffold72068__1_contigs__length_34189 LN:34189 skipping SAM header line: @SQ SN:PGA_scaffold72069__1_contigs__length_33571 LN:33571 skipping SAM header line: @SQ SN:PGA_scaffold72071__1_contigs__length_21947 LN:21947 skipping SAM header line: @SQ SN:PGA_scaffold72073__1_contigs__length_17665 LN:17665 skipping SAM header line: @SQ SN:PGA_scaffold72080__1_contigs__length_14524 LN:14524 skipping SAM header line: @SQ SN:PGA_scaffold72089__1_contigs__length_18781 LN:18781 skipping SAM header line: @SQ SN:PGA_scaffold72098__1_contigs__length_32300 LN:32300 skipping SAM header line: @SQ SN:PGA_scaffold72102__1_contigs__length_48320 LN:48320 skipping SAM header line: @SQ SN:PGA_scaffold72105__1_contigs__length_15735 LN:15735 skipping SAM header line: @SQ SN:PGA_scaffold72110__1_contigs__length_29824 LN:29824 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72159__1_contigs__length_13324 LN:13324 skipping SAM header line: @SQ SN:PGA_scaffold72160__1_contigs__length_14793 LN:14793 skipping SAM header line: @SQ SN:PGA_scaffold72163__1_contigs__length_14690 LN:14690 skipping SAM header line: @SQ SN:PGA_scaffold72179__1_contigs__length_28764 LN:28764 skipping SAM header line: @SQ SN:PGA_scaffold72182__1_contigs__length_22282 LN:22282 skipping SAM header line: @SQ SN:PGA_scaffold72184__1_contigs__length_12911 LN:12911 skipping SAM header line: @SQ SN:PGA_scaffold72185__1_contigs__length_19085 LN:19085 skipping SAM header line: @SQ SN:PGA_scaffold72190__1_contigs__length_16709 LN:16709 skipping SAM header line: @SQ SN:PGA_scaffold72191__1_contigs__length_12395 LN:12395 skipping SAM header line: @SQ SN:PGA_scaffold72192__1_contigs__length_36706 LN:36706 skipping SAM header line: @SQ SN:PGA_scaffold72203__1_contigs__length_32495 LN:32495 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72252__1_contigs__length_37979 LN:37979 skipping SAM header line: @SQ SN:PGA_scaffold72262__1_contigs__length_18008 LN:18008 skipping SAM header line: @SQ SN:PGA_scaffold72264__1_contigs__length_14375 LN:14375 skipping SAM header line: @SQ SN:PGA_scaffold72281__1_contigs__length_10963 LN:10963 skipping SAM header line: @SQ SN:PGA_scaffold72282__1_contigs__length_53999 LN:53999 skipping SAM header line: @SQ SN:PGA_scaffold72288__1_contigs__length_10035 LN:10035 skipping SAM header line: @SQ SN:PGA_scaffold72292__1_contigs__length_23034 LN:23034 skipping SAM header line: @SQ SN:PGA_scaffold72295__1_contigs__length_11368 LN:11368 skipping SAM header line: @SQ SN:PGA_scaffold72300__1_contigs__length_18906 LN:18906 skipping SAM header line: @SQ SN:PGA_scaffold72301__1_contigs__length_15846 LN:15846 skipping SAM header line: @SQ SN:PGA_scaffold72305__1_contigs__length_11996 LN:11996 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72351__1_contigs__length_20007 LN:20007 skipping SAM header line: @SQ SN:PGA_scaffold72359__1_contigs__length_12761 LN:12761 skipping SAM header line: @SQ SN:PGA_scaffold72360__1_contigs__length_26982 LN:26982 skipping SAM header line: @SQ SN:PGA_scaffold72363__1_contigs__length_51108 LN:51108 skipping SAM header line: @SQ SN:PGA_scaffold72369__1_contigs__length_12873 LN:12873 skipping SAM header line: @SQ SN:PGA_scaffold72372__1_contigs__length_12573 LN:12573 skipping SAM header line: @SQ SN:PGA_scaffold72380__1_contigs__length_10056 LN:10056 skipping SAM header line: @SQ SN:PGA_scaffold72389__1_contigs__length_23825 LN:23825 skipping SAM header line: @SQ SN:PGA_scaffold72390__1_contigs__length_26746 LN:26746 skipping SAM header line: @SQ SN:PGA_scaffold72392__1_contigs__length_64631 LN:64631 skipping SAM header line: @SQ SN:PGA_scaffold72393__1_contigs__length_25339 LN:25339 skipping SAM header line: @SQ SN:PGA_scaffold72395__1_contigs__length_11236 LN:11236 skipping SAM header line: @SQ SN:PGA_scaffold72396__1_contigs__length_26979 LN:26979 skipping SAM header line: @SQ SN:PGA_scaffold72401__1_contigs__length_11598 LN:11598 skipping SAM header line: @SQ SN:PGA_scaffold72403__1_contigs__length_16659 LN:16659 skipping SAM header line: @SQ SN:PGA_scaffold72405__1_contigs__length_22443 LN:22443 skipping SAM header line: @SQ SN:PGA_scaffold72407__1_contigs__length_43790 LN:43790 skipping SAM header line: @SQ SN:PGA_scaffold72408__1_contigs__length_33946 LN:33946 skipping SAM header line: @SQ SN:PGA_scaffold72412__1_contigs__length_23919 LN:23919 skipping SAM header line: @SQ SN:PGA_scaffold72417__1_contigs__length_30564 LN:30564 skipping SAM header line: @SQ SN:PGA_scaffold72419__1_contigs__length_18307 LN:18307 skipping SAM header line: @SQ SN:PGA_scaffold72422__1_contigs__length_22878 LN:22878 skipping SAM header line: @SQ SN:PGA_scaffold72425__1_contigs__length_13267 LN:13267 skipping SAM header line: @SQ SN:PGA_scaffold72429__1_contigs__length_13813 LN:13813 skipping SAM header line: @SQ SN:PGA_scaffold72431__1_contigs__length_10149 LN:10149 skipping SAM header line: @SQ SN:PGA_scaffold72433__1_contigs__length_24650 LN:24650 skipping SAM header line: @SQ SN:PGA_scaffold72434__1_contigs__length_10886 LN:10886 skipping SAM header line: @SQ SN:PGA_scaffold72438__1_contigs__length_25708 LN:25708 skipping SAM header line: @SQ SN:PGA_scaffold72451__1_contigs__length_10731 LN:10731 skipping SAM header line: @SQ SN:PGA_scaffold72453__1_contigs__length_31506 LN:31506 skipping SAM header line: @SQ SN:PGA_scaffold72460__1_contigs__length_11913 LN:11913 skipping SAM header line: @SQ SN:PGA_scaffold72461__1_contigs__length_14963 LN:14963 skipping SAM header line: @SQ SN:PGA_scaffold72465__1_contigs__length_21329 LN:21329 skipping SAM header line: @SQ SN:PGA_scaffold72466__1_contigs__length_13091 LN:13091 skipping SAM header line: @SQ SN:PGA_scaffold72472__1_contigs__length_14999 LN:14999 skipping SAM header line: @SQ SN:PGA_scaffold72474__1_contigs__length_25323 LN:25323 skipping SAM header line: @SQ SN:PGA_scaffold72475__1_contigs__length_16776 LN:16776 skipping SAM header line: @SQ SN:PGA_scaffold72477__1_contigs__length_23151 LN:23151 skipping SAM header line: @SQ SN:PGA_scaffold72480__1_contigs__length_68331 LN:68331 skipping SAM header line: @SQ SN:PGA_scaffold72481__1_contigs__length_33703 LN:33703 skipping SAM header line: @SQ SN:PGA_scaffold72485__1_contigs__length_17076 LN:17076 skipping SAM header line: @SQ SN:PGA_scaffold72487__1_contigs__length_11601 LN:11601 skipping SAM header line: @SQ SN:PGA_scaffold72488__1_contigs__length_34233 LN:34233 skipping SAM header line: @SQ SN:PGA_scaffold72491__1_contigs__length_21084 LN:21084 skipping SAM header line: @SQ SN:PGA_scaffold72494__1_contigs__length_12547 LN:12547 skipping SAM header line: @SQ SN:PGA_scaffold72497__1_contigs__length_12121 LN:12121 skipping SAM header line: @SQ SN:PGA_scaffold72501__1_contigs__length_14620 LN:14620 skipping SAM header line: @SQ SN:PGA_scaffold72509__1_contigs__length_10798 LN:10798 skipping SAM header line: @SQ SN:PGA_scaffold72513__1_contigs__length_20118 LN:20118 skipping SAM header line: @SQ SN:PGA_scaffold72524__1_contigs__length_12599 LN:12599 skipping SAM header line: @SQ SN:PGA_scaffold72531__1_contigs__length_13247 LN:13247 skipping SAM header line: @SQ SN:PGA_scaffold72532__1_contigs__length_11469 LN:11469 skipping SAM header line: @SQ SN:PGA_scaffold72533__1_contigs__length_20272 LN:20272 skipping SAM header line: @SQ SN:PGA_scaffold72541__1_contigs__length_15461 LN:15461 skipping SAM header line: @SQ SN:PGA_scaffold72542__1_contigs__length_13292 LN:13292 skipping SAM header line: @SQ SN:PGA_scaffold72545__1_contigs__length_20533 LN:20533 skipping SAM header line: @SQ SN:PGA_scaffold72548__1_contigs__length_15523 LN:15523 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72611__1_contigs__length_13539 LN:13539 skipping SAM header line: @SQ SN:PGA_scaffold72616__1_contigs__length_45338 LN:45338 skipping SAM header line: @SQ SN:PGA_scaffold72620__1_contigs__length_22914 LN:22914 skipping SAM header line: @SQ SN:PGA_scaffold72628__1_contigs__length_62046 LN:62046 skipping SAM header line: @SQ SN:PGA_scaffold72630__1_contigs__length_16008 LN:16008 skipping SAM header line: @SQ SN:PGA_scaffold72632__1_contigs__length_13690 LN:13690 skipping SAM header line: @SQ SN:PGA_scaffold72633__1_contigs__length_32334 LN:32334 skipping SAM header line: @SQ SN:PGA_scaffold72635__1_contigs__length_12782 LN:12782 skipping SAM header line: @SQ SN:PGA_scaffold72638__1_contigs__length_13793 LN:13793 skipping SAM header line: @SQ SN:PGA_scaffold72642__1_contigs__length_22783 LN:22783 skipping SAM header line: @SQ SN:PGA_scaffold72646__1_contigs__length_42408 LN:42408 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72703__1_contigs__length_17551 LN:17551 skipping SAM header line: @SQ SN:PGA_scaffold72705__1_contigs__length_14180 LN:14180 skipping SAM header line: @SQ SN:PGA_scaffold72707__1_contigs__length_20113 LN:20113 skipping SAM header line: @SQ SN:PGA_scaffold72708__1_contigs__length_14901 LN:14901 skipping SAM header line: @SQ SN:PGA_scaffold72721__1_contigs__length_28847 LN:28847 skipping SAM header line: @SQ SN:PGA_scaffold72728__1_contigs__length_18358 LN:18358 skipping SAM header line: @SQ SN:PGA_scaffold72735__1_contigs__length_16712 LN:16712 skipping SAM header line: @SQ SN:PGA_scaffold72740__1_contigs__length_15969 LN:15969 skipping SAM header line: @SQ SN:PGA_scaffold72744__1_contigs__length_13153 LN:13153 skipping SAM header line: @SQ SN:PGA_scaffold72746__1_contigs__length_14314 LN:14314 skipping SAM header line: @SQ SN:PGA_scaffold72747__1_contigs__length_23008 LN:23008 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72788__1_contigs__length_17171 LN:17171 skipping SAM header line: @SQ SN:PGA_scaffold72789__1_contigs__length_13441 LN:13441 skipping SAM header line: @SQ SN:PGA_scaffold72790__1_contigs__length_10027 LN:10027 skipping SAM header line: @SQ SN:PGA_scaffold72792__1_contigs__length_12339 LN:12339 skipping SAM header line: @SQ SN:PGA_scaffold72793__1_contigs__length_19007 LN:19007 skipping SAM header line: @SQ SN:PGA_scaffold72794__1_contigs__length_10039 LN:10039 skipping SAM header line: @SQ SN:PGA_scaffold72803__1_contigs__length_11768 LN:11768 skipping SAM header line: @SQ SN:PGA_scaffold72804__1_contigs__length_26320 LN:26320 skipping SAM header line: @SQ SN:PGA_scaffold72805__1_contigs__length_14993 LN:14993 skipping SAM header line: @SQ SN:PGA_scaffold72806__1_contigs__length_10865 LN:10865 skipping SAM header line: @SQ SN:PGA_scaffold72807__1_contigs__length_16250 LN:16250 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold73201__1_contigs__length_19416 LN:19416 skipping SAM header line: @SQ SN:PGA_scaffold73203__1_contigs__length_14928 LN:14928 skipping SAM header line: @SQ SN:PGA_scaffold73217__1_contigs__length_13325 LN:13325 skipping SAM header line: @SQ SN:PGA_scaffold73226__1_contigs__length_10627 LN:10627 skipping SAM header line: @SQ SN:PGA_scaffold73228__1_contigs__length_16547 LN:16547 skipping SAM header line: @SQ SN:PGA_scaffold73229__1_contigs__length_10793 LN:10793 skipping SAM header line: @SQ SN:PGA_scaffold73232__1_contigs__length_14881 LN:14881 skipping SAM header line: @SQ SN:PGA_scaffold73234__1_contigs__length_16542 LN:16542 skipping SAM header line: @SQ SN:PGA_scaffold73237__1_contigs__length_12208 LN:12208 skipping SAM header line: @SQ SN:PGA_scaffold73239__1_contigs__length_15470 LN:15470 skipping SAM header line: @SQ SN:PGA_scaffold73240__1_contigs__length_12939 LN:12939 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold73273__1_contigs__length_26050 LN:26050 skipping SAM header line: @SQ SN:PGA_scaffold73336__1_contigs__length_12440 LN:12440 skipping SAM header line: @SQ SN:PGA_scaffold73337__1_contigs__length_12440 LN:12440 skipping SAM header line: @SQ SN:PGA_scaffold73364__1_contigs__length_18583 LN:18583 skipping SAM header line: @SQ SN:PGA_scaffold73365__1_contigs__length_18538 LN:18538 skipping SAM header line: @SQ SN:PGA_scaffold73366__1_contigs__length_18583 LN:18583 skipping SAM header line: @SQ SN:PGA_scaffold73367__1_contigs__length_18538 LN:18538 skipping SAM header line: @SQ SN:PGA_scaffold73368__1_contigs__length_14700 LN:14700 skipping SAM header line: @SQ SN:PGA_scaffold73369__1_contigs__length_14224 LN:14224 skipping SAM header line: @SQ SN:PGA_scaffold73370__1_contigs__length_14700 LN:14700 skipping SAM header line: @SQ SN:PGA_scaffold73371__1_contigs__length_14224 LN:14224 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold73857__1_contigs__length_10472 LN:10472 skipping SAM header line: @SQ SN:PGA_scaffold73862__1_contigs__length_10472 LN:10472 skipping SAM header line: @SQ SN:PGA_scaffold73934__1_contigs__length_12357 LN:12357 skipping SAM header line: @SQ SN:PGA_scaffold73935__1_contigs__length_12357 LN:12357 skipping SAM header line: @SQ SN:PGA_scaffold73936__1_contigs__length_12354 LN:12354 skipping SAM header line: @SQ SN:PGA_scaffold73937__1_contigs__length_12354 LN:12354 skipping SAM header line: @SQ SN:PGA_scaffold74016__1_contigs__length_11492 LN:11492 skipping SAM header line: @SQ SN:PGA_scaffold74017__1_contigs__length_32278 LN:32278 skipping SAM header line: @SQ SN:PGA_scaffold74018__1_contigs__length_32278 LN:32278 skipping SAM header line: @SQ SN:PGA_scaffold74019__1_contigs__length_11492 LN:11492 skipping SAM header line: @SQ SN:PGA_scaffold74022__1_contigs__length_20310 LN:20310 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold79614__1_contigs__length_26669 LN:26669 skipping SAM header line: @SQ SN:PGA_scaffold79615__1_contigs__length_26357 LN:26357 skipping SAM header line: @SQ SN:PGA_scaffold79616__1_contigs__length_26669 LN:26669 skipping SAM header line: @SQ SN:PGA_scaffold79617__1_contigs__length_26357 LN:26357 skipping SAM header line: @SQ SN:PGA_scaffold80509__1_contigs__length_10094 LN:10094 skipping SAM header line: @SQ SN:PGA_scaffold80510__1_contigs__length_10094 LN:10094 skipping SAM header line: @SQ SN:PGA_scaffold80511__1_contigs__length_19108 LN:19108 skipping SAM header line: @SQ SN:PGA_scaffold80512__1_contigs__length_19108 LN:19108 skipping SAM header line: @SQ SN:PGA_scaffold80555__1_contigs__length_12175 LN:12175 skipping SAM header line: @SQ SN:PGA_scaffold80556__1_contigs__length_12175 LN:12175 skipping SAM header line: @SQ SN:PGA_scaffold80642__1_contigs__length_10684 LN:10684 skipping SAM header line: @SQ SN:PGA_scaffold80644__1_contigs__length_12060 LN:12060 skipping SAM header line: @SQ SN:PGA_scaffold80648__1_contigs__length_10684 LN:10684 skipping SAM header line: @SQ SN:PGA_scaffold80650__1_contigs__length_12060 LN:12060 skipping SAM header line: @SQ SN:PGA_scaffold80702__1_contigs__length_15051 LN:15051 skipping SAM header line: @SQ SN:PGA_scaffold80705__1_contigs__length_15051 LN:15051 skipping SAM header line: @SQ SN:PGA_scaffold80790__1_contigs__length_11669 LN:11669 skipping SAM header line: @SQ SN:PGA_scaffold80791__1_contigs__length_11669 LN:11669 skipping SAM header line: @SQ SN:PGA_scaffold80906__1_contigs__length_11048 LN:11048 skipping SAM header line: @SQ SN:PGA_scaffold80907__1_contigs__length_11048 LN:11048 skipping SAM header line: @SQ SN:PGA_scaffold80908__1_contigs__length_10670 LN:10670 skipping SAM header line: @SQ SN:PGA_scaffold80909__1_contigs__length_10670 LN:10670 skipping SAM header line: @SQ SN:PGA_scaffold80914__1_contigs__length_10044 LN:10044 skipping SAM header line: @SQ SN:PGA_scaffold80915__1_contigs__length_10044 LN:10044 skipping SAM header line: @SQ SN:PGA_scaffold80928__1_contigs__length_10049 LN:10049 skipping SAM header line: @SQ SN:PGA_scaffold80929__1_contigs__length_10049 LN:10049 skipping SAM header line: @SQ SN:PGA_scaffold81119__1_contigs__length_11532 LN:11532 skipping SAM header line: @SQ SN:PGA_scaffold81120__1_contigs__length_13078 LN:13078 skipping SAM header line: @SQ SN:PGA_scaffold81123__1_contigs__length_11532 LN:11532 skipping SAM header line: @SQ SN:PGA_scaffold81124__1_contigs__length_13078 LN:13078 skipping SAM header line: @SQ SN:PGA_scaffold81130__1_contigs__length_12316 LN:12316 skipping SAM header line: @SQ SN:PGA_scaffold81131__1_contigs__length_12316 LN:12316 skipping SAM header line: @SQ SN:PGA_scaffold81166__1_contigs__length_11656 LN:11656 skipping SAM header line: @SQ SN:PGA_scaffold81170__1_contigs__length_11656 LN:11656 skipping SAM header line: @SQ SN:PGA_scaffold81196__1_contigs__length_19591 LN:19591 skipping SAM header line: @SQ SN:PGA_scaffold81197__1_contigs__length_19591 LN:19591 skipping SAM header line: @SQ SN:PGA_scaffold81198__1_contigs__length_30077 LN:30077 skipping SAM header line: @SQ SN:PGA_scaffold81199__1_contigs__length_30077 LN:30077 skipping SAM header line: @SQ SN:PGA_scaffold81203__1_contigs__length_12954 LN:12954 skipping SAM header line: @SQ SN:PGA_scaffold81209__1_contigs__length_12954 LN:12954 skipping SAM header line: @SQ SN:PGA_scaffold81415__1_contigs__length_10765 LN:10765 skipping SAM header line: @SQ SN:PGA_scaffold81416__1_contigs__length_10765 LN:10765 skipping SAM header line: @SQ SN:PGA_scaffold81552__1_contigs__length_18068 LN:18068 skipping SAM header line: @SQ SN:PGA_scaffold81553__1_contigs__length_18068 LN:18068 skipping SAM header line: @SQ SN:PGA_scaffold81554__1_contigs__length_11378 LN:11378 skipping SAM header line: @SQ SN:PGA_scaffold81555__1_contigs__length_12184 LN:12184 skipping SAM header line: @SQ SN:PGA_scaffold81556__1_contigs__length_18568 LN:18568 skipping SAM header line: @SQ SN:PGA_scaffold81557__1_contigs__length_18568 LN:18568 skipping SAM header line: @SQ SN:PGA_scaffold81558__1_contigs__length_11378 LN:11378 skipping SAM header line: @SQ SN:PGA_scaffold81559__1_contigs__length_12184 LN:12184 skipping SAM header line: @SQ SN:PGA_scaffold81572__1_contigs__length_10290 LN:10290 skipping SAM header line: @SQ SN:PGA_scaffold81573__1_contigs__length_10290 LN:10290 skipping SAM header line: @SQ SN:PGA_scaffold81574__1_contigs__length_12237 LN:12237 skipping SAM header line: @SQ SN:PGA_scaffold81575__1_contigs__length_12237 LN:12237 skipping SAM header line: @SQ SN:PGA_scaffold81576__1_contigs__length_12235 LN:12235 skipping SAM header line: @SQ SN:PGA_scaffold81577__1_contigs__length_12235 LN:12235 skipping SAM header line: @SQ SN:PGA_scaffold81610__1_contigs__length_10388 LN:10388 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold81739__1_contigs__length_11433 LN:11433 skipping SAM header line: @SQ SN:PGA_scaffold81740__1_contigs__length_12797 LN:12797 skipping SAM header line: @SQ SN:PGA_scaffold81741__1_contigs__length_12797 LN:12797 skipping SAM header line: @SQ SN:PGA_scaffold81742__1_contigs__length_11431 LN:11431 skipping SAM header line: @SQ SN:PGA_scaffold81743__1_contigs__length_11431 LN:11431 skipping SAM header line: @SQ SN:PGA_scaffold81877__1_contigs__length_11532 LN:11532 skipping SAM header line: @SQ SN:PGA_scaffold81878__1_contigs__length_13078 LN:13078 skipping SAM header line: @SQ SN:PGA_scaffold81881__1_contigs__length_11532 LN:11532 skipping SAM header line: @SQ SN:PGA_scaffold81882__1_contigs__length_13078 LN:13078 skipping SAM header line: @SQ SN:PGA_scaffold81962__1_contigs__length_12002 LN:12002 skipping SAM header line: @SQ SN:PGA_scaffold81963__1_contigs__length_12002 LN:12002 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold82613__1_contigs__length_15564 LN:15564 skipping SAM header line: @SQ SN:PGA_scaffold82618__1_contigs__length_15564 LN:15564 skipping SAM header line: @SQ SN:PGA_scaffold82660__1_contigs__length_10277 LN:10277 skipping SAM header line: @SQ SN:PGA_scaffold82661__1_contigs__length_10277 LN:10277 skipping SAM header line: @SQ SN:PGA_scaffold82795__1_contigs__length_13945 LN:13945 skipping SAM header line: @SQ SN:PGA_scaffold82797__1_contigs__length_13945 LN:13945 skipping SAM header line: @SQ SN:PGA_scaffold82810__1_contigs__length_12871 LN:12871 skipping SAM header line: @SQ SN:PGA_scaffold82815__1_contigs__length_12871 LN:12871 skipping SAM header line: @SQ SN:PGA_scaffold82842__1_contigs__length_39037 LN:39037 skipping SAM header line: @SQ SN:PGA_scaffold82843__1_contigs__length_39038 LN:39038 skipping SAM header line: @SQ SN:PGA_scaffold82844__1_contigs__length_39037 LN:39037 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold82859__1_contigs__length_11326 LN:11326 skipping SAM header line: @SQ SN:PGA_scaffold82860__1_contigs__length_19766 LN:19766 skipping SAM header line: @SQ SN:PGA_scaffold82861__1_contigs__length_22515 LN:22515 skipping SAM header line: @SQ SN:PGA_scaffold82862__1_contigs__length_11735 LN:11735 skipping SAM header line: @SQ SN:PGA_scaffold82863__1_contigs__length_18962 LN:18962 skipping SAM header line: @SQ SN:PGA_scaffold82956__1_contigs__length_15197 LN:15197 skipping SAM header line: @SQ SN:PGA_scaffold82957__1_contigs__length_15197 LN:15197 skipping SAM header line: @SQ SN:PGA_scaffold82960__1_contigs__length_11580 LN:11580 skipping SAM header line: @SQ SN:PGA_scaffold82961__1_contigs__length_11580 LN:11580 skipping SAM header line: @SQ SN:PGA_scaffold83199__1_contigs__length_14837 LN:14837 skipping SAM header line: @SQ SN:PGA_scaffold83200__1_contigs__length_11530 LN:11530 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold83732__1_contigs__length_30091 LN:30091 skipping SAM header line: @SQ SN:PGA_scaffold83733__1_contigs__length_30091 LN:30091 skipping SAM header line: @SQ SN:PGA_scaffold83802__1_contigs__length_12437 LN:12437 skipping SAM header line: @SQ SN:PGA_scaffold83803__1_contigs__length_11738 LN:11738 skipping SAM header line: @SQ SN:PGA_scaffold83804__1_contigs__length_11738 LN:11738 skipping SAM header line: @SQ SN:PGA_scaffold83805__1_contigs__length_12437 LN:12437 skipping SAM header line: @SQ SN:PGA_scaffold83818__1_contigs__length_12437 LN:12437 skipping SAM header line: @SQ SN:PGA_scaffold83819__1_contigs__length_11738 LN:11738 skipping SAM header line: @SQ SN:PGA_scaffold83820__1_contigs__length_11738 LN:11738 skipping SAM header line: @SQ SN:PGA_scaffold83821__1_contigs__length_12437 LN:12437 skipping SAM header line: @SQ SN:PGA_scaffold84078__1_contigs__length_19757 LN:19757 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold84135__1_contigs__length_23648 LN:23648 skipping SAM header line: @SQ SN:PGA_scaffold84458__1_contigs__length_10934 LN:10934 skipping SAM header line: @SQ SN:PGA_scaffold84459__1_contigs__length_10934 LN:10934 skipping SAM header line: @SQ SN:PGA_scaffold84538__1_contigs__length_11062 LN:11062 skipping SAM header line: @SQ SN:PGA_scaffold84539__1_contigs__length_16065 LN:16065 skipping SAM header line: @SQ SN:PGA_scaffold84540__1_contigs__length_11062 LN:11062 skipping SAM header line: @SQ SN:PGA_scaffold84541__1_contigs__length_16065 LN:16065 skipping SAM header line: @SQ SN:PGA_scaffold84566__1_contigs__length_12424 LN:12424 skipping SAM header line: @SQ SN:PGA_scaffold84567__1_contigs__length_12424 LN:12424 skipping SAM header line: @SQ SN:PGA_scaffold84570__1_contigs__length_34138 LN:34138 skipping SAM header line: @SQ SN:PGA_scaffold84571__1_contigs__length_34138 LN:34138 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold85340__1_contigs__length_13570 LN:13570 skipping SAM header line: @SQ SN:PGA_scaffold85453__1_contigs__length_10649 LN:10649 skipping SAM header line: @SQ SN:PGA_scaffold85456__1_contigs__length_10649 LN:10649 skipping SAM header line: @SQ SN:PGA_scaffold85477__1_contigs__length_10649 LN:10649 skipping SAM header line: @SQ SN:PGA_scaffold85480__1_contigs__length_10649 LN:10649 skipping SAM header line: @SQ SN:PGA_scaffold85593__1_contigs__length_15462 LN:15462 skipping SAM header line: @SQ SN:PGA_scaffold85594__1_contigs__length_15462 LN:15462 skipping SAM header line: @SQ SN:PGA_scaffold85595__1_contigs__length_10408 LN:10408 skipping SAM header line: @SQ SN:PGA_scaffold85598__1_contigs__length_10408 LN:10408 skipping SAM header line: @SQ SN:PGA_scaffold85703__1_contigs__length_10408 LN:10408 skipping SAM header line: @SQ SN:PGA_scaffold85704__1_contigs__length_10408 LN:10408 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold85785__1_contigs__length_16018 LN:16018 skipping SAM header line: @SQ SN:PGA_scaffold85786__1_contigs__length_13267 LN:13267 skipping SAM header line: @SQ SN:PGA_scaffold85797__1_contigs__length_16018 LN:16018 skipping SAM header line: @SQ SN:PGA_scaffold85798__1_contigs__length_13267 LN:13267 skipping SAM header line: @SQ SN:PGA_scaffold85799__1_contigs__length_16018 LN:16018 skipping SAM header line: @SQ SN:PGA_scaffold85800__1_contigs__length_13267 LN:13267 skipping SAM header line: @SQ SN:PGA_scaffold86301__1_contigs__length_11559 LN:11559 skipping SAM header line: @SQ SN:PGA_scaffold86302__1_contigs__length_11559 LN:11559 skipping SAM header line: @SQ SN:PGA_scaffold86455__1_contigs__length_10771 LN:10771 skipping SAM header line: @SQ SN:PGA_scaffold86456__1_contigs__length_10771 LN:10771 skipping SAM header line: @SQ SN:PGA_scaffold86463__1_contigs__length_13654 LN:13654 skipping SAM header line: @SQ SN:PGA_scaffold86464__1_contigs__length_13663 LN:13663 skipping SAM header line: @SQ SN:PGA_scaffold86465__1_contigs__length_13654 LN:13654 skipping SAM header line: @SQ SN:PGA_scaffold86466__1_contigs__length_13663 LN:13663 skipping SAM header line: @SQ SN:PGA_scaffold86500__1_contigs__length_10298 LN:10298 skipping SAM header line: @SQ SN:PGA_scaffold86502__1_contigs__length_10298 LN:10298 skipping SAM header line: @SQ SN:PGA_scaffold86509__1_contigs__length_10298 LN:10298 skipping SAM header line: @SQ SN:PGA_scaffold86510__1_contigs__length_10298 LN:10298 skipping SAM header line: @SQ SN:PGA_scaffold86623__1_contigs__length_31971 LN:31971 skipping SAM header line: @SQ SN:PGA_scaffold86624__1_contigs__length_31971 LN:31971 skipping SAM header line: @SQ SN:PGA_scaffold86625__1_contigs__length_31971 LN:31971 skipping SAM header line: @SQ SN:PGA_scaffold86626__1_contigs__length_31971 LN:31971 skipping SAM header line: @SQ SN:PGA_scaffold86631__1_contigs__length_11553 LN:11553 skipping SAM header line: @SQ SN:PGA_scaffold86633__1_contigs__length_11553 LN:11553 skipping SAM header line: @SQ SN:PGA_scaffold86636__1_contigs__length_11967 LN:11967 skipping SAM header line: @SQ SN:PGA_scaffold86637__1_contigs__length_18057 LN:18057 skipping SAM header line: @SQ SN:PGA_scaffold86639__1_contigs__length_18057 LN:18057 skipping SAM header line: @SQ SN:PGA_scaffold86644__1_contigs__length_11967 LN:11967 skipping SAM header line: @SQ SN:PGA_scaffold86645__1_contigs__length_18057 LN:18057 skipping SAM header line: @SQ SN:PGA_scaffold86647__1_contigs__length_18057 LN:18057 skipping SAM header line: @SQ SN:PGA_scaffold86669__1_contigs__length_19591 LN:19591 skipping SAM header line: @SQ SN:PGA_scaffold86670__1_contigs__length_19591 LN:19591 skipping SAM header line: @SQ SN:PGA_scaffold86671__1_contigs__length_30077 LN:30077 skipping SAM header line: @SQ SN:PGA_scaffold86672__1_contigs__length_30077 LN:30077 skipping SAM header line: @SQ SN:PGA_scaffold86675__1_contigs__length_12954 LN:12954 skipping SAM header line: @SQ SN:PGA_scaffold86682__1_contigs__length_12954 LN:12954 skipping SAM header line: @SQ SN:PGA_scaffold86749__1_contigs__length_12531 LN:12531 skipping SAM header line: @SQ SN:PGA_scaffold86750__1_contigs__length_12531 LN:12531 skipping SAM header line: @SQ SN:PGA_scaffold86751__1_contigs__length_23984 LN:23984 skipping SAM header line: @SQ SN:PGA_scaffold86752__1_contigs__length_29432 LN:29432 skipping SAM header line: @SQ SN:PGA_scaffold86753__1_contigs__length_23984 LN:23984 skipping SAM header line: @SQ SN:PGA_scaffold86754__1_contigs__length_29432 LN:29432 skipping SAM header line: @SQ SN:PGA_scaffold86803__1_contigs__length_11743 LN:11743 skipping SAM header line: @SQ SN:PGA_scaffold86804__1_contigs__length_11743 LN:11743 skipping SAM header line: @SQ SN:PGA_scaffold86805__1_contigs__length_21966 LN:21966 skipping SAM header line: @SQ SN:PGA_scaffold86807__1_contigs__length_21966 LN:21966 skipping SAM header line: @SQ SN:PGA_scaffold86841__1_contigs__length_15196 LN:15196 skipping SAM header line: @SQ SN:PGA_scaffold86842__1_contigs__length_15196 LN:15196 skipping SAM header line: @SQ SN:PGA_scaffold86845__1_contigs__length_11582 LN:11582 skipping SAM header line: @SQ SN:PGA_scaffold86846__1_contigs__length_11582 LN:11582 skipping SAM header line: @SQ SN:PGA_scaffold86912__1_contigs__length_10132 LN:10132 skipping SAM header line: @SQ SN:PGA_scaffold86915__1_contigs__length_10132 LN:10132 skipping SAM header line: @SQ SN:PGA_scaffold87071__1_contigs__length_17623 LN:17623 skipping SAM header line: @SQ SN:PGA_scaffold87072__1_contigs__length_17623 LN:17623 skipping SAM header line: @SQ SN:PGA_scaffold87074__1_contigs__length_10288 LN:10288 skipping SAM header line: @SQ SN:PGA_scaffold87075__1_contigs__length_10288 LN:10288 skipping SAM header line: @SQ SN:PGA_scaffold87091__1_contigs__length_17623 LN:17623 skipping SAM header line: @SQ SN:PGA_scaffold87092__1_contigs__length_17623 LN:17623 skipping SAM header line: @SQ SN:PGA_scaffold87093__1_contigs__length_10288 LN:10288 skipping SAM header line: @SQ SN:PGA_scaffold87094__1_contigs__length_10288 LN:10288 skipping SAM header line: @SQ SN:PGA_scaffold87221__1_contigs__length_16046 LN:16046 skipping SAM header line: @SQ SN:PGA_scaffold87222__1_contigs__length_16046 LN:16046 skipping SAM header line: @SQ SN:PGA_scaffold87223__1_contigs__length_16893 LN:16893 skipping SAM header line: @SQ SN:PGA_scaffold87224__1_contigs__length_16671 LN:16671 skipping SAM header line: @SQ SN:PGA_scaffold87225__1_contigs__length_16893 LN:16893 skipping SAM header line: @SQ SN:PGA_scaffold87226__1_contigs__length_16671 LN:16671 skipping SAM header line: @SQ SN:PGA_scaffold87228__1_contigs__length_12647 LN:12647 skipping SAM header line: @SQ SN:PGA_scaffold87232__1_contigs__length_12647 LN:12647 skipping SAM header line: @SQ SN:PGA_scaffold87293__1_contigs__length_10156 LN:10156 skipping SAM header line: @SQ SN:PGA_scaffold87294__1_contigs__length_10156 LN:10156 skipping SAM header line: @SQ SN:PGA_scaffold87453__1_contigs__length_14746 LN:14746 skipping SAM header line: @SQ SN:PGA_scaffold87454__1_contigs__length_14746 LN:14746 skipping SAM header line: @SQ SN:PGA_scaffold87539__1_contigs__length_14746 LN:14746 skipping SAM header line: @SQ SN:PGA_scaffold87540__1_contigs__length_14746 LN:14746 skipping SAM header line: @SQ SN:PGA_scaffold87577__1_contigs__length_12840 LN:12840 skipping SAM header line: @SQ SN:PGA_scaffold87578__1_contigs__length_12840 LN:12840 skipping SAM header line: @SQ SN:PGA_scaffold87581__1_contigs__length_10557 LN:10557 skipping SAM header line: @SQ SN:PGA_scaffold87585__1_contigs__length_10557 LN:10557 skipping SAM header line: @SQ SN:PGA_scaffold87687__1_contigs__length_16119 LN:16119 skipping SAM header line: @SQ SN:PGA_scaffold87688__1_contigs__length_16397 LN:16397 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold87905__1_contigs__length_23984 LN:23984 skipping SAM header line: @SQ SN:PGA_scaffold87906__1_contigs__length_23984 LN:23984 skipping SAM header line: @SQ SN:PGA_scaffold87907__1_contigs__length_29432 LN:29432 skipping SAM header line: @SQ SN:PGA_scaffold87908__1_contigs__length_29432 LN:29432 skipping SAM header line: @SQ SN:PGA_scaffold87929__1_contigs__length_17942 LN:17942 skipping SAM header line: @SQ SN:PGA_scaffold87930__1_contigs__length_17942 LN:17942 skipping SAM header line: @SQ SN:PGA_scaffold87931__1_contigs__length_38482 LN:38482 skipping SAM header line: @SQ SN:PGA_scaffold87935__1_contigs__length_38482 LN:38482 skipping SAM header line: @SQ SN:PGA_scaffold88097__1_contigs__length_12349 LN:12349 skipping SAM header line: @SQ SN:PGA_scaffold88098__1_contigs__length_12349 LN:12349 skipping SAM header line: @SQ SN:PGA_scaffold88099__1_contigs__length_12349 LN:12349 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold88668__1_contigs__length_16893 LN:16893 skipping SAM header line: @SQ SN:PGA_scaffold88670__1_contigs__length_16893 LN:16893 skipping SAM header line: @SQ SN:PGA_scaffold88671__1_contigs__length_16046 LN:16046 skipping SAM header line: @SQ SN:PGA_scaffold88673__1_contigs__length_16816 LN:16816 skipping SAM header line: @SQ SN:PGA_scaffold88675__1_contigs__length_12647 LN:12647 skipping SAM header line: @SQ SN:PGA_scaffold88677__1_contigs__length_16816 LN:16816 skipping SAM header line: @SQ SN:PGA_scaffold88679__1_contigs__length_12647 LN:12647 skipping SAM header line: @SQ SN:PGA_scaffold88785__1_contigs__length_12771 LN:12771 skipping SAM header line: @SQ SN:PGA_scaffold88786__1_contigs__length_13349 LN:13349 skipping SAM header line: @SQ SN:PGA_scaffold88787__1_contigs__length_13349 LN:13349 skipping SAM header line: @SQ SN:PGA_scaffold88788__1_contigs__length_12771 LN:12771 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold89505__1_contigs__length_13305 LN:13305 skipping SAM header line: @SQ SN:PGA_scaffold89506__1_contigs__length_13305 LN:13305 skipping SAM header line: @SQ SN:PGA_scaffold90035__1_contigs__length_10828 LN:10828 skipping SAM header line: @SQ SN:PGA_scaffold90036__1_contigs__length_10793 LN:10793 skipping SAM header line: @SQ SN:PGA_scaffold90039__1_contigs__length_10828 LN:10828 skipping SAM header line: @SQ SN:PGA_scaffold90040__1_contigs__length_10793 LN:10793 skipping SAM header line: @SQ SN:PGA_scaffold90105__1_contigs__length_14692 LN:14692 skipping SAM header line: @SQ SN:PGA_scaffold90106__1_contigs__length_14692 LN:14692 skipping SAM header line: @SQ SN:PGA_scaffold90107__1_contigs__length_20033 LN:20033 skipping SAM header line: @SQ SN:PGA_scaffold90108__1_contigs__length_20033 LN:20033 skipping SAM header line: @SQ SN:PGA_scaffold90159__1_contigs__length_13856 LN:13856 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold90602__1_contigs__length_13885 LN:13885 skipping SAM header line: @SQ SN:PGA_scaffold90603__1_contigs__length_14025 LN:14025 skipping SAM header line: @SQ SN:PGA_scaffold90604__1_contigs__length_13885 LN:13885 skipping SAM header line: @SQ SN:PGA_scaffold90629__1_contigs__length_14025 LN:14025 skipping SAM header line: @SQ SN:PGA_scaffold90630__1_contigs__length_13885 LN:13885 skipping SAM header line: @SQ SN:PGA_scaffold90631__1_contigs__length_14025 LN:14025 skipping SAM header line: @SQ SN:PGA_scaffold90632__1_contigs__length_13885 LN:13885 skipping SAM header line: @SQ SN:PGA_scaffold90665__1_contigs__length_12890 LN:12890 skipping SAM header line: @SQ SN:PGA_scaffold90666__1_contigs__length_15679 LN:15679 skipping SAM header line: @SQ SN:PGA_scaffold90671__1_contigs__length_12890 LN:12890 skipping SAM header line: @SQ SN:PGA_scaffold90672__1_contigs__length_15679 LN:15679 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold91241__1_contigs__length_13761 LN:13761 skipping SAM header line: @SQ SN:PGA_scaffold91245__1_contigs__length_11617 LN:11617 skipping SAM header line: @SQ SN:PGA_scaffold91246__1_contigs__length_13761 LN:13761 skipping SAM header line: @SQ SN:PGA_scaffold91250__1_contigs__length_11617 LN:11617 skipping SAM header line: @SQ SN:PGA_scaffold91286__1_contigs__length_14604 LN:14604 skipping SAM header line: @SQ SN:PGA_scaffold91287__1_contigs__length_14758 LN:14758 skipping SAM header line: @SQ SN:PGA_scaffold91290__1_contigs__length_14604 LN:14604 skipping SAM header line: @SQ SN:PGA_scaffold91291__1_contigs__length_14758 LN:14758 skipping SAM header line: @SQ SN:PGA_scaffold91313__1_contigs__length_10311 LN:10311 skipping SAM header line: @SQ SN:PGA_scaffold91315__1_contigs__length_10311 LN:10311 skipping SAM header line: @SQ SN:PGA_scaffold91347__1_contigs__length_12515 LN:12515 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold91598__1_contigs__length_18661 LN:18661 skipping SAM header line: @SQ SN:PGA_scaffold91693__1_contigs__length_14672 LN:14672 skipping SAM header line: @SQ SN:PGA_scaffold91694__1_contigs__length_14672 LN:14672 skipping SAM header line: @SQ SN:PGA_scaffold91709__1_contigs__length_12045 LN:12045 skipping SAM header line: @SQ SN:PGA_scaffold91710__1_contigs__length_11448 LN:11448 skipping SAM header line: @SQ SN:PGA_scaffold91711__1_contigs__length_12045 LN:12045 skipping SAM header line: @SQ SN:PGA_scaffold91712__1_contigs__length_11448 LN:11448 skipping SAM header line: @SQ SN:PGA_scaffold91713__1_contigs__length_16558 LN:16558 skipping SAM header line: @SQ SN:PGA_scaffold91714__1_contigs__length_16558 LN:16558 skipping SAM header line: @SQ SN:PGA_scaffold91715__1_contigs__length_12260 LN:12260 skipping SAM header line: @SQ SN:PGA_scaffold91716__1_contigs__length_12260 LN:12260 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold91989__1_contigs__length_10228 LN:10228 skipping SAM header line: @SQ SN:PGA_scaffold91991__1_contigs__length_10228 LN:10228 skipping SAM header line: @SQ SN:PGA_scaffold92299__1_contigs__length_19950 LN:19950 skipping SAM header line: @SQ SN:PGA_scaffold92300__1_contigs__length_19950 LN:19950 skipping SAM header line: @SQ SN:PGA_scaffold92315__1_contigs__length_12077 LN:12077 skipping SAM header line: @SQ SN:PGA_scaffold92316__1_contigs__length_12330 LN:12330 skipping SAM header line: @SQ SN:PGA_scaffold92317__1_contigs__length_12330 LN:12330 skipping SAM header line: @SQ SN:PGA_scaffold92318__1_contigs__length_12077 LN:12077 skipping SAM header line: @SQ SN:PGA_scaffold92319__1_contigs__length_15804 LN:15804 skipping SAM header line: @SQ SN:PGA_scaffold92320__1_contigs__length_15804 LN:15804 skipping SAM header line: @SQ SN:PGA_scaffold92321__1_contigs__length_15758 LN:15758 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold92994__1_contigs__length_10415 LN:10415 skipping SAM header line: @SQ SN:PGA_scaffold93578__1_contigs__length_11271 LN:11271 skipping SAM header line: @SQ SN:PGA_scaffold93582__1_contigs__length_11271 LN:11271 skipping SAM header line: @SQ SN:PGA_scaffold93623__1_contigs__length_11015 LN:11015 skipping SAM header line: @SQ SN:PGA_scaffold93624__1_contigs__length_11015 LN:11015 skipping SAM header line: @SQ SN:PGA_scaffold93709__1_contigs__length_17978 LN:17978 skipping SAM header line: @SQ SN:PGA_scaffold93710__1_contigs__length_17978 LN:17978 skipping SAM header line: @SQ SN:PGA_scaffold93711__1_contigs__length_16533 LN:16533 skipping SAM header line: @SQ SN:PGA_scaffold93712__1_contigs__length_16533 LN:16533 skipping SAM header line: @SQ SN:PGA_scaffold93795__1_contigs__length_12247 LN:12247 skipping SAM header line: @SQ SN:PGA_scaffold93802__1_contigs__length_12247 LN:12247 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold94277__1_contigs__length_14527 LN:14527 skipping SAM header line: @SQ SN:PGA_scaffold94279__1_contigs__length_14527 LN:14527 skipping SAM header line: @SQ SN:PGA_scaffold94693__1_contigs__length_12515 LN:12515 skipping SAM header line: @SQ SN:PGA_scaffold94694__1_contigs__length_12515 LN:12515 skipping SAM header line: @SQ SN:PGA_scaffold94695__1_contigs__length_19016 LN:19016 skipping SAM header line: @SQ SN:PGA_scaffold94696__1_contigs__length_19016 LN:19016 skipping SAM header line: @SQ SN:PGA_scaffold94697__1_contigs__length_22386 LN:22386 skipping SAM header line: @SQ SN:PGA_scaffold94698__1_contigs__length_22386 LN:22386 skipping SAM header line: @SQ SN:PGA_scaffold94723__1_contigs__length_18026 LN:18026 skipping SAM header line: @SQ SN:PGA_scaffold94726__1_contigs__length_17781 LN:17781 skipping SAM header line: @SQ SN:PGA_scaffold94729__1_contigs__length_17781 LN:17781 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold94891__1_contigs__length_15352 LN:15352 skipping SAM header line: @SQ SN:PGA_scaffold94893__1_contigs__length_12728 LN:12728 skipping SAM header line: @SQ SN:PGA_scaffold94894__1_contigs__length_12728 LN:12728 skipping SAM header line: @SQ SN:PGA_scaffold95003__1_contigs__length_10949 LN:10949 skipping SAM header line: @SQ SN:PGA_scaffold95006__1_contigs__length_10949 LN:10949 skipping SAM header line: @SQ SN:PGA_scaffold95275__1_contigs__length_10949 LN:10949 skipping SAM header line: @SQ SN:PGA_scaffold95278__1_contigs__length_10949 LN:10949 skipping SAM header line: @SQ SN:PGA_scaffold95361__1_contigs__length_11667 LN:11667 skipping SAM header line: @SQ SN:PGA_scaffold95362__1_contigs__length_11667 LN:11667 skipping SAM header line: @SQ SN:PGA_scaffold95510__1_contigs__length_16026 LN:16026 skipping SAM header line: @SQ SN:PGA_scaffold95511__1_contigs__length_16014 LN:16014 skipping SAM header line: @SQ 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SN:PGA_scaffold313647__2_contigs__length_5689983 LN:5689983 skipping SAM header line: @SQ SN:PGA_scaffold313648__2_contigs__length_3786466 LN:3786466 skipping SAM header line: @SQ SN:PGA_scaffold313649__2_contigs__length_2716785 LN:2716785 skipping SAM header line: @PG ID:Bismark VN:v0.19.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64 --samtools_path /gscratch/srlab/programs/samtools-1.9 --score_min L,0,-1.2 -I 60 -p 28 --genome /gscratch/srlab/strigg/data/Pgenr/Pgenr_070_10K/ -1 /gscratch/srlab/strigg/data/Pgenr/FASTQS/2019_broodstock_amb_v_lowpH/Tank2-025-026_trim_R1_001.fastq.gz -2 /gscratch/srlab/strigg/data/Pgenr/FASTQS/2019_broodstock_amb_v_lowpH/Tank2-025-026_trim_R2_001.fastq.gz -o /gscratch/srlab/strigg/analyses/20190415_10K" Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 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lines: 36000000 Processed lines: 35000000 Processed lines: 35000000 Processed lines: 36000000 Processed lines: 35500000 Processed lines: 35500000 Processed lines: 35500000 Processed lines: 36000000 Processed lines: 36500000 Processed lines: 36000000 Processed lines: 35500000 Processed lines: 36500000 Processed lines: 36000000 Processed lines: 35500000 Processed lines: 36500000 Processed lines: 36000000 Processed lines: 35500000 Processed lines: 36000000 Processed lines: 36000000 Processed lines: 37500000 Processed lines: 35500000 Processed lines: 35500000 Processed lines: 35500000 Processed lines: 36000000 Processed lines: 38500000 Processed lines: 35500000 Processed lines: 36000000 Processed lines: 36500000 Processed lines: 36500000 Processed lines: 35500000 Processed lines: 35500000 Processed lines: 36500000 Processed lines: 36000000 Processed lines: 36000000 Processed lines: 36000000 Processed lines: 37000000 Processed lines: 36500000 Processed lines: 36500000 Processed lines: 36000000 Processed lines: 36500000 Processed lines: 37000000 Processed lines: 36500000 Processed lines: 37000000 Processed lines: 36000000 Processed lines: 38000000 Processed lines: 36000000 Processed lines: 36500000 Finished processing child process. Exiting.. Processed lines: 36500000 Processed lines: 36000000 Processed lines: 36000000 Processed lines: 36000000 Processed lines: 36500000 Processed lines: 36000000 Processed lines: 36500000 Processed lines: 37000000 Processed lines: 37000000 Processed lines: 36000000 Processed lines: 36000000 Processed lines: 37000000 Processed lines: 36500000 Processed lines: 36500000 Processed lines: 36500000 Processed lines: 37500000 Processed lines: 37000000 Processed lines: 37000000 Processed lines: 36500000 Processed lines: 37500000 Processed lines: 37000000 Processed lines: 37500000 Processed lines: 36500000 Processed lines: 37000000 Processed lines: 38500000 Processed lines: 37000000 Processed lines: 36500000 Processed lines: 37000000 Processed lines: 36500000 Processed lines: 36500000 Processed lines: 37000000 Processed lines: 36500000 Processed lines: 36500000 Processed lines: 37000000 Processed lines: 37500000 Processed lines: 37500000 Processed lines: 36500000 Processed lines: 37500000 Processed lines: 36500000 Processed lines: 37000000 Processed lines: 37000000 Processed lines: 38000000 Processed lines: 37000000 Processed lines: 37500000 Processed lines: 37500000 Processed lines: 37000000 Finished processing child process. Exiting.. Processed lines: 38000000 Processed lines: 37500000 Processed lines: 38000000 Processed lines: 37000000 Processed lines: 37500000 Processed lines: 37500000 Processed lines: 37000000 Processed lines: 37500000 Processed lines: 37000000 Processed lines: 37000000 Processed lines: 37500000 Processed lines: 37000000 Processed lines: 37000000 Processed lines: 37500000 Processed lines: 38000000 Processed lines: 38000000 Processed lines: 37000000 Processed lines: 38000000 Processed lines: 37000000 Processed lines: 37500000 Processed lines: 38500000 Processed lines: 37500000 Processed lines: 37500000 Processed lines: 38000000 Processed lines: 38000000 Processed lines: 37500000 Processed lines: 38000000 Processed lines: 38500000 Processed lines: 38500000 Processed lines: 38000000 Processed lines: 37500000 Processed lines: 38000000 Processed lines: 37500000 Processed lines: 38000000 Processed lines: 37500000 Processed lines: 37500000 Processed lines: 37500000 Processed lines: 38000000 Processed lines: 37500000 Processed lines: 38000000 Processed lines: 38500000 Processed lines: 38500000 Processed lines: 37500000 Processed lines: 38500000 Finished processing child process. Exiting.. Processed lines: 38000000 Processed lines: 37500000 Processed lines: 38000000 Processed lines: 38000000 Processed lines: 38500000 Processed lines: 38500000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 38000000 Processed lines: 38500000 Processed lines: 38500000 Processed lines: 38000000 Processed lines: 38500000 Processed lines: 38000000 Processed lines: 38500000 Processed lines: 38000000 Processed lines: 38000000 Processed lines: 38000000 Processed lines: 38500000 Finished processing child process. Exiting.. Processed lines: 38000000 Processed lines: 38500000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 38000000 Processed lines: 38500000 Processed lines: 38000000 Processed lines: 38500000 Processed lines: 38500000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 38500000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 38500000 Finished processing child process. Exiting.. Processed lines: 38500000 Processed lines: 38500000 Finished processing child process. Exiting.. Processed lines: 38500000 Processed lines: 38500000 Finished processing child process. Exiting.. Processed lines: 38500000 Processed lines: 38500000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 38500000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Merging individual splitting reports into overall report: '/gscratch/srlab/strigg/analyses/20190415_10K/Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: Processed 38960019 lines in total Total number of methylation call strings processed: 77920038 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1060006273 Total methylated C's in CpG context: 23298832 Total methylated C's in CHG context: 3506195 Total methylated C's in CHH context: 14286000 Total C to T conversions in CpG context: 102397659 Total C to T conversions in CHG context: 184778081 Total C to T conversions in CHH context: 731739506 C methylated in CpG context: 18.5% C methylated in CHG context: 1.9% C methylated in CHH context: 1.9% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 93 Maximum read length of Read 2: 93 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 93 Maximum read length of Read 2: 93 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OT_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CpG_CTOT_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CpG_CTOB_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OB_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OT_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CHG_CTOT_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CHG_CTOB_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OB_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OT_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CHH_CTOT_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CHH_CTOB_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OB_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OT_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OB_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OT_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OB_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OT_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OB_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >/gscratch/srlab/strigg/analyses/20190415_10K/< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 2G Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: Writing bedGraph to file: Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bismark.cov.gz Changed directory to /gscratch/srlab/strigg/analyses/20190415_10K/ The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Merging all input files and sorting everything in memory instead of writing out individual chromosome files... Writing all merged methylation calls to temp file Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz.methylation_calls.merged Finished writing methylation calls from CpG_OT_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt to merged temp file Finished writing methylation calls from CpG_OB_Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.txt to merged temp file Sorting input file Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz.methylation_calls.merged by positions (using -S of 2G) Successfully deleted the temporary input file Tank2-025-026_trim_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz.methylation_calls.merged Finished BedGraph conversion ... Checking file >>/gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... ...passed! Writing result file containing methylation information for C in CpG context from the original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OT_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CpG context from the complementary to original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CpG_CTOT_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CpG context from the complementary to original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CpG_CTOB_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CpG context from the original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OB_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHG context from the original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OT_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHG context from the complementary to original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHG_CTOT_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHG context from the complementary to original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHG_CTOB_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHG context from the original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OB_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHH context from the original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OT_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHH context from the complementary to original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHH_CTOT_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHH context from the complementary to original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHH_CTOB_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHH context from the original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OB_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold1__77_contigs__length_89643857 LN:89643857 skipping SAM header line: @SQ SN:PGA_scaffold2__36_contigs__length_69596280 LN:69596280 skipping SAM header line: @SQ SN:PGA_scaffold3__111_contigs__length_57743597 LN:57743597 skipping SAM header line: @SQ SN:PGA_scaffold4__129_contigs__length_65288255 LN:65288255 skipping SAM header line: @SQ SN:PGA_scaffold5__109_contigs__length_67248332 LN:67248332 skipping SAM header line: @SQ SN:PGA_scaffold6__104_contigs__length_61759565 LN:61759565 skipping SAM header line: @SQ SN:PGA_scaffold7__69_contigs__length_43120122 LN:43120122 skipping SAM header line: @SQ SN:PGA_scaffold8__63_contigs__length_61151155 LN:61151155 skipping SAM header line: @SQ SN:PGA_scaffold9__45_contigs__length_38581958 LN:38581958 skipping SAM header line: @SQ SN:PGA_scaffold10__49_contigs__length_53961475 LN:53961475 skipping SAM header line: @SQ SN:PGA_scaffold11__79_contigs__length_51449921 LN:51449921 skipping SAM header line: @SQ SN:PGA_scaffold12__71_contigs__length_50438331 LN:50438331 skipping SAM header line: @SQ SN:PGA_scaffold13__52_contigs__length_44396874 LN:44396874 skipping SAM header line: @SQ SN:PGA_scaffold14__91_contigs__length_45393038 LN:45393038 skipping SAM header line: @SQ SN:PGA_scaffold15__101_contigs__length_47938513 LN:47938513 skipping SAM header line: @SQ SN:PGA_scaffold16__33_contigs__length_31980953 LN:31980953 skipping SAM header line: @SQ SN:PGA_scaffold17__51_contigs__length_34923512 LN:34923512 skipping SAM header line: @SQ SN:PGA_scaffold18__69_contigs__length_27737463 LN:27737463 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold13367__1_contigs__length_15359 LN:15359 skipping SAM header line: @SQ SN:PGA_scaffold13370__1_contigs__length_13193 LN:13193 skipping SAM header line: @SQ SN:PGA_scaffold13378__1_contigs__length_16417 LN:16417 skipping SAM header line: @SQ SN:PGA_scaffold13412__1_contigs__length_11325 LN:11325 skipping SAM header line: @SQ SN:PGA_scaffold13425__1_contigs__length_10248 LN:10248 skipping SAM header line: @SQ SN:PGA_scaffold13431__1_contigs__length_19035 LN:19035 skipping SAM header line: @SQ SN:PGA_scaffold13469__1_contigs__length_10308 LN:10308 skipping SAM header line: @SQ SN:PGA_scaffold13532__1_contigs__length_10730 LN:10730 skipping SAM header line: @SQ SN:PGA_scaffold13558__1_contigs__length_11671 LN:11671 skipping SAM header line: @SQ SN:PGA_scaffold13645__1_contigs__length_10244 LN:10244 skipping SAM header line: @SQ SN:PGA_scaffold13688__1_contigs__length_11119 LN:11119 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold20671__1_contigs__length_11416 LN:11416 skipping SAM header line: @SQ SN:PGA_scaffold20679__1_contigs__length_10637 LN:10637 skipping SAM header line: @SQ SN:PGA_scaffold20693__1_contigs__length_14136 LN:14136 skipping SAM header line: @SQ SN:PGA_scaffold20697__1_contigs__length_19407 LN:19407 skipping SAM header line: @SQ SN:PGA_scaffold20699__1_contigs__length_17598 LN:17598 skipping SAM header line: @SQ SN:PGA_scaffold20711__1_contigs__length_17336 LN:17336 skipping SAM header line: @SQ SN:PGA_scaffold20736__1_contigs__length_12741 LN:12741 skipping SAM header line: @SQ SN:PGA_scaffold20757__1_contigs__length_11844 LN:11844 skipping SAM header line: @SQ SN:PGA_scaffold20779__1_contigs__length_20010 LN:20010 skipping SAM header line: @SQ SN:PGA_scaffold20791__1_contigs__length_12581 LN:12581 skipping SAM header line: @SQ SN:PGA_scaffold20816__1_contigs__length_13800 LN:13800 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold21098__1_contigs__length_14229 LN:14229 skipping SAM header line: @SQ SN:PGA_scaffold21145__1_contigs__length_11689 LN:11689 skipping SAM header line: @SQ SN:PGA_scaffold21155__1_contigs__length_28037 LN:28037 skipping SAM header line: @SQ SN:PGA_scaffold21161__1_contigs__length_10074 LN:10074 skipping SAM header line: @SQ SN:PGA_scaffold21180__1_contigs__length_12108 LN:12108 skipping SAM header line: @SQ SN:PGA_scaffold21190__1_contigs__length_11535 LN:11535 skipping SAM header line: @SQ SN:PGA_scaffold21191__1_contigs__length_15836 LN:15836 skipping SAM header line: @SQ SN:PGA_scaffold21210__1_contigs__length_13970 LN:13970 skipping SAM header line: @SQ SN:PGA_scaffold21221__1_contigs__length_13550 LN:13550 skipping SAM header line: @SQ SN:PGA_scaffold21270__1_contigs__length_14329 LN:14329 skipping SAM header line: @SQ SN:PGA_scaffold21275__1_contigs__length_12895 LN:12895 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold31796__1_contigs__length_14086 LN:14086 skipping SAM header line: @SQ SN:PGA_scaffold31803__1_contigs__length_11656 LN:11656 skipping SAM header line: @SQ SN:PGA_scaffold31804__1_contigs__length_13872 LN:13872 skipping SAM header line: @SQ SN:PGA_scaffold31807__1_contigs__length_20368 LN:20368 skipping SAM header line: @SQ SN:PGA_scaffold31809__1_contigs__length_12997 LN:12997 skipping SAM header line: @SQ SN:PGA_scaffold31810__1_contigs__length_25011 LN:25011 skipping SAM header line: @SQ SN:PGA_scaffold31811__1_contigs__length_13567 LN:13567 skipping SAM header line: @SQ SN:PGA_scaffold31812__1_contigs__length_23207 LN:23207 skipping SAM header line: @SQ SN:PGA_scaffold31815__1_contigs__length_17241 LN:17241 skipping SAM header line: @SQ SN:PGA_scaffold31816__1_contigs__length_11090 LN:11090 skipping SAM header line: @SQ SN:PGA_scaffold31817__1_contigs__length_19400 LN:19400 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold32027__1_contigs__length_11657 LN:11657 skipping SAM header line: @SQ SN:PGA_scaffold32033__1_contigs__length_10177 LN:10177 skipping SAM header line: @SQ SN:PGA_scaffold32037__1_contigs__length_12059 LN:12059 skipping SAM header line: @SQ SN:PGA_scaffold32038__1_contigs__length_10627 LN:10627 skipping SAM header line: @SQ SN:PGA_scaffold32039__1_contigs__length_11937 LN:11937 skipping SAM header line: @SQ SN:PGA_scaffold32040__1_contigs__length_25532 LN:25532 skipping SAM header line: @SQ SN:PGA_scaffold32042__1_contigs__length_24927 LN:24927 skipping SAM header line: @SQ SN:PGA_scaffold32043__1_contigs__length_17381 LN:17381 skipping SAM header line: @SQ SN:PGA_scaffold32044__1_contigs__length_14848 LN:14848 skipping SAM header line: @SQ SN:PGA_scaffold32046__1_contigs__length_31565 LN:31565 skipping SAM header line: @SQ SN:PGA_scaffold32048__1_contigs__length_23410 LN:23410 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold32095__1_contigs__length_16120 LN:16120 skipping SAM header line: @SQ SN:PGA_scaffold32097__1_contigs__length_20765 LN:20765 skipping SAM header line: @SQ SN:PGA_scaffold32098__1_contigs__length_10590 LN:10590 skipping SAM header line: @SQ SN:PGA_scaffold32104__1_contigs__length_16631 LN:16631 skipping SAM header line: @SQ SN:PGA_scaffold32105__1_contigs__length_12104 LN:12104 skipping SAM header line: @SQ SN:PGA_scaffold32151__1_contigs__length_16264 LN:16264 skipping SAM header line: @SQ SN:PGA_scaffold32174__1_contigs__length_11533 LN:11533 skipping SAM header line: @SQ SN:PGA_scaffold32179__1_contigs__length_12831 LN:12831 skipping SAM header line: @SQ SN:PGA_scaffold32180__1_contigs__length_11854 LN:11854 skipping SAM header line: @SQ SN:PGA_scaffold32184__1_contigs__length_11206 LN:11206 skipping SAM header line: @SQ SN:PGA_scaffold32200__1_contigs__length_20934 LN:20934 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold37015__1_contigs__length_12689 LN:12689 skipping SAM header line: @SQ SN:PGA_scaffold37016__1_contigs__length_16255 LN:16255 skipping SAM header line: @SQ SN:PGA_scaffold37025__1_contigs__length_20206 LN:20206 skipping SAM header line: @SQ SN:PGA_scaffold37035__1_contigs__length_28627 LN:28627 skipping SAM header line: @SQ SN:PGA_scaffold37208__1_contigs__length_10075 LN:10075 skipping SAM header line: @SQ SN:PGA_scaffold37310__1_contigs__length_23447 LN:23447 skipping SAM header line: @SQ SN:PGA_scaffold37328__1_contigs__length_10685 LN:10685 skipping SAM header line: @SQ SN:PGA_scaffold37557__1_contigs__length_10518 LN:10518 skipping SAM header line: @SQ SN:PGA_scaffold37565__1_contigs__length_11017 LN:11017 skipping SAM header line: @SQ SN:PGA_scaffold37572__1_contigs__length_13878 LN:13878 skipping SAM header line: @SQ SN:PGA_scaffold37574__1_contigs__length_18623 LN:18623 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold37759__1_contigs__length_13518 LN:13518 skipping SAM header line: @SQ SN:PGA_scaffold37762__1_contigs__length_12783 LN:12783 skipping SAM header line: @SQ SN:PGA_scaffold37763__1_contigs__length_19924 LN:19924 skipping SAM header line: @SQ SN:PGA_scaffold37800__1_contigs__length_26499 LN:26499 skipping SAM header line: @SQ SN:PGA_scaffold37819__1_contigs__length_12095 LN:12095 skipping SAM header line: @SQ SN:PGA_scaffold37829__1_contigs__length_16587 LN:16587 skipping SAM header line: @SQ SN:PGA_scaffold37955__1_contigs__length_10895 LN:10895 skipping SAM header line: @SQ SN:PGA_scaffold37958__1_contigs__length_14680 LN:14680 skipping SAM header line: @SQ SN:PGA_scaffold37961__1_contigs__length_10994 LN:10994 skipping SAM header line: @SQ SN:PGA_scaffold37965__1_contigs__length_13881 LN:13881 skipping SAM header line: @SQ SN:PGA_scaffold37969__1_contigs__length_16955 LN:16955 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold38021__1_contigs__length_12916 LN:12916 skipping SAM header line: @SQ SN:PGA_scaffold38022__1_contigs__length_17982 LN:17982 skipping SAM header line: @SQ SN:PGA_scaffold38042__1_contigs__length_11303 LN:11303 skipping SAM header line: @SQ SN:PGA_scaffold38072__1_contigs__length_12702 LN:12702 skipping SAM header line: @SQ SN:PGA_scaffold38085__1_contigs__length_16826 LN:16826 skipping SAM header line: @SQ SN:PGA_scaffold38114__1_contigs__length_18567 LN:18567 skipping SAM header line: @SQ SN:PGA_scaffold38121__1_contigs__length_22090 LN:22090 skipping SAM header line: @SQ SN:PGA_scaffold38122__1_contigs__length_13308 LN:13308 skipping SAM header line: @SQ SN:PGA_scaffold38128__1_contigs__length_16021 LN:16021 skipping SAM header line: @SQ SN:PGA_scaffold38134__1_contigs__length_17916 LN:17916 skipping SAM header line: @SQ SN:PGA_scaffold38138__1_contigs__length_12478 LN:12478 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold39339__1_contigs__length_12423 LN:12423 skipping SAM header line: @SQ SN:PGA_scaffold39341__1_contigs__length_10578 LN:10578 skipping SAM header line: @SQ SN:PGA_scaffold39342__1_contigs__length_14500 LN:14500 skipping SAM header line: @SQ SN:PGA_scaffold39343__1_contigs__length_12541 LN:12541 skipping SAM header line: @SQ SN:PGA_scaffold39344__1_contigs__length_23639 LN:23639 skipping SAM header line: @SQ SN:PGA_scaffold39347__1_contigs__length_20746 LN:20746 skipping SAM header line: @SQ SN:PGA_scaffold39348__1_contigs__length_10355 LN:10355 skipping SAM header line: @SQ SN:PGA_scaffold39349__1_contigs__length_30049 LN:30049 skipping SAM header line: @SQ SN:PGA_scaffold39350__1_contigs__length_17650 LN:17650 skipping SAM header line: @SQ SN:PGA_scaffold39351__1_contigs__length_10146 LN:10146 skipping SAM header line: @SQ SN:PGA_scaffold39352__1_contigs__length_11293 LN:11293 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold43229__1_contigs__length_10636 LN:10636 skipping SAM header line: @SQ SN:PGA_scaffold43235__1_contigs__length_17163 LN:17163 skipping SAM header line: @SQ SN:PGA_scaffold43270__1_contigs__length_13334 LN:13334 skipping SAM header line: @SQ SN:PGA_scaffold43305__1_contigs__length_28701 LN:28701 skipping SAM header line: @SQ SN:PGA_scaffold43313__1_contigs__length_21118 LN:21118 skipping SAM header line: @SQ SN:PGA_scaffold43317__1_contigs__length_11462 LN:11462 skipping SAM header line: @SQ SN:PGA_scaffold43322__1_contigs__length_16910 LN:16910 skipping SAM header line: @SQ SN:PGA_scaffold43349__1_contigs__length_21587 LN:21587 skipping SAM header line: @SQ SN:PGA_scaffold43350__1_contigs__length_11858 LN:11858 skipping SAM header line: @SQ SN:PGA_scaffold43351__1_contigs__length_14334 LN:14334 skipping SAM header line: @SQ SN:PGA_scaffold43362__1_contigs__length_13786 LN:13786 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold43520__1_contigs__length_19065 LN:19065 skipping SAM header line: @SQ SN:PGA_scaffold43528__1_contigs__length_13364 LN:13364 skipping SAM header line: @SQ SN:PGA_scaffold43537__1_contigs__length_16854 LN:16854 skipping SAM header line: @SQ SN:PGA_scaffold43546__1_contigs__length_12268 LN:12268 skipping SAM header line: @SQ SN:PGA_scaffold43557__1_contigs__length_11245 LN:11245 skipping SAM header line: @SQ SN:PGA_scaffold43605__1_contigs__length_16531 LN:16531 skipping SAM header line: @SQ SN:PGA_scaffold43611__1_contigs__length_18859 LN:18859 skipping SAM header line: @SQ SN:PGA_scaffold43613__1_contigs__length_11497 LN:11497 skipping SAM header line: @SQ SN:PGA_scaffold43626__1_contigs__length_17505 LN:17505 skipping SAM header line: @SQ SN:PGA_scaffold43638__1_contigs__length_11681 LN:11681 skipping SAM header line: @SQ SN:PGA_scaffold43645__1_contigs__length_10534 LN:10534 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold43702__1_contigs__length_13254 LN:13254 skipping SAM header line: @SQ SN:PGA_scaffold43704__1_contigs__length_26494 LN:26494 skipping SAM header line: @SQ SN:PGA_scaffold43705__1_contigs__length_16584 LN:16584 skipping SAM header line: @SQ SN:PGA_scaffold43717__1_contigs__length_14953 LN:14953 skipping SAM header line: @SQ SN:PGA_scaffold43718__1_contigs__length_27730 LN:27730 skipping SAM header line: @SQ SN:PGA_scaffold43719__1_contigs__length_12622 LN:12622 skipping SAM header line: @SQ SN:PGA_scaffold43721__1_contigs__length_10937 LN:10937 skipping SAM header line: @SQ SN:PGA_scaffold43723__1_contigs__length_13877 LN:13877 skipping SAM header line: @SQ SN:PGA_scaffold43730__1_contigs__length_14721 LN:14721 skipping SAM header line: @SQ SN:PGA_scaffold43731__1_contigs__length_16151 LN:16151 skipping SAM header line: @SQ SN:PGA_scaffold43732__1_contigs__length_10573 LN:10573 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold46139__1_contigs__length_39029 LN:39029 skipping SAM header line: @SQ SN:PGA_scaffold46140__1_contigs__length_14947 LN:14947 skipping SAM header line: @SQ SN:PGA_scaffold46144__1_contigs__length_30043 LN:30043 skipping SAM header line: @SQ SN:PGA_scaffold46146__1_contigs__length_16709 LN:16709 skipping SAM header line: @SQ SN:PGA_scaffold46149__1_contigs__length_17955 LN:17955 skipping SAM header line: @SQ SN:PGA_scaffold46150__1_contigs__length_17440 LN:17440 skipping SAM header line: @SQ SN:PGA_scaffold46151__1_contigs__length_14283 LN:14283 skipping SAM header line: @SQ SN:PGA_scaffold46154__1_contigs__length_14242 LN:14242 skipping SAM header line: @SQ SN:PGA_scaffold46157__1_contigs__length_21667 LN:21667 skipping SAM header line: @SQ SN:PGA_scaffold46169__1_contigs__length_22331 LN:22331 skipping SAM header line: @SQ SN:PGA_scaffold46171__1_contigs__length_21827 LN:21827 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold49165__1_contigs__length_22310 LN:22310 skipping SAM header line: @SQ SN:PGA_scaffold49167__1_contigs__length_20560 LN:20560 skipping SAM header line: @SQ SN:PGA_scaffold49174__1_contigs__length_12969 LN:12969 skipping SAM header line: @SQ SN:PGA_scaffold49175__1_contigs__length_28691 LN:28691 skipping SAM header line: @SQ SN:PGA_scaffold49186__1_contigs__length_11971 LN:11971 skipping SAM header line: @SQ SN:PGA_scaffold49191__1_contigs__length_10824 LN:10824 skipping SAM header line: @SQ SN:PGA_scaffold49194__1_contigs__length_29168 LN:29168 skipping SAM header line: @SQ SN:PGA_scaffold49200__1_contigs__length_15006 LN:15006 skipping SAM header line: @SQ SN:PGA_scaffold49209__1_contigs__length_10515 LN:10515 skipping SAM header line: @SQ SN:PGA_scaffold49210__1_contigs__length_13683 LN:13683 skipping SAM header line: @SQ SN:PGA_scaffold49211__1_contigs__length_11356 LN:11356 skipping SAM header line: @SQ SN:PGA_scaffold49221__1_contigs__length_14192 LN:14192 skipping SAM header line: @SQ SN:PGA_scaffold49224__1_contigs__length_19858 LN:19858 skipping SAM header line: @SQ SN:PGA_scaffold49226__1_contigs__length_27352 LN:27352 skipping SAM header line: @SQ SN:PGA_scaffold49229__1_contigs__length_10015 LN:10015 skipping SAM header line: @SQ SN:PGA_scaffold49232__1_contigs__length_11940 LN:11940 skipping SAM header line: @SQ SN:PGA_scaffold49234__1_contigs__length_12806 LN:12806 skipping SAM header line: @SQ SN:PGA_scaffold49236__1_contigs__length_17279 LN:17279 skipping SAM header line: @SQ SN:PGA_scaffold49239__1_contigs__length_15724 LN:15724 skipping SAM header line: @SQ SN:PGA_scaffold49240__1_contigs__length_15576 LN:15576 skipping SAM header line: @SQ SN:PGA_scaffold49253__1_contigs__length_11797 LN:11797 skipping SAM header line: @SQ SN:PGA_scaffold49255__1_contigs__length_12863 LN:12863 skipping SAM header line: @SQ SN:PGA_scaffold49256__1_contigs__length_10395 LN:10395 skipping SAM header line: @SQ SN:PGA_scaffold49257__1_contigs__length_26558 LN:26558 skipping SAM header line: @SQ SN:PGA_scaffold49259__1_contigs__length_12333 LN:12333 skipping SAM header line: @SQ SN:PGA_scaffold49266__1_contigs__length_11576 LN:11576 skipping SAM header line: @SQ SN:PGA_scaffold49268__1_contigs__length_12961 LN:12961 skipping SAM header line: @SQ SN:PGA_scaffold49269__1_contigs__length_58629 LN:58629 skipping SAM header line: @SQ SN:PGA_scaffold49272__1_contigs__length_48462 LN:48462 skipping SAM header line: @SQ SN:PGA_scaffold49286__1_contigs__length_32480 LN:32480 skipping SAM header line: @SQ SN:PGA_scaffold49289__1_contigs__length_10153 LN:10153 skipping SAM header line: @SQ SN:PGA_scaffold49291__1_contigs__length_14827 LN:14827 skipping SAM header line: @SQ SN:PGA_scaffold49292__1_contigs__length_14774 LN:14774 skipping SAM header line: @SQ SN:PGA_scaffold49294__1_contigs__length_18010 LN:18010 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold49326__1_contigs__length_14299 LN:14299 skipping SAM header line: @SQ SN:PGA_scaffold49327__1_contigs__length_31386 LN:31386 skipping SAM header line: @SQ SN:PGA_scaffold49330__1_contigs__length_23437 LN:23437 skipping SAM header line: @SQ SN:PGA_scaffold49332__1_contigs__length_16295 LN:16295 skipping SAM header line: @SQ SN:PGA_scaffold49336__1_contigs__length_27472 LN:27472 skipping SAM header line: @SQ SN:PGA_scaffold49337__1_contigs__length_44952 LN:44952 skipping SAM header line: @SQ SN:PGA_scaffold49340__1_contigs__length_11653 LN:11653 skipping SAM header line: @SQ SN:PGA_scaffold49343__1_contigs__length_14077 LN:14077 skipping SAM header line: @SQ SN:PGA_scaffold49344__1_contigs__length_12943 LN:12943 skipping SAM header line: @SQ SN:PGA_scaffold49345__1_contigs__length_12605 LN:12605 skipping SAM header line: @SQ SN:PGA_scaffold49352__1_contigs__length_23523 LN:23523 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold50839__1_contigs__length_13550 LN:13550 skipping SAM header line: @SQ SN:PGA_scaffold50855__1_contigs__length_17396 LN:17396 skipping SAM header line: @SQ SN:PGA_scaffold50857__1_contigs__length_15440 LN:15440 skipping SAM header line: @SQ SN:PGA_scaffold50862__1_contigs__length_10894 LN:10894 skipping SAM header line: @SQ SN:PGA_scaffold50881__1_contigs__length_11214 LN:11214 skipping SAM header line: @SQ SN:PGA_scaffold50884__1_contigs__length_14439 LN:14439 skipping SAM header line: @SQ SN:PGA_scaffold50887__1_contigs__length_20418 LN:20418 skipping SAM header line: @SQ SN:PGA_scaffold50893__1_contigs__length_17684 LN:17684 skipping SAM header line: @SQ SN:PGA_scaffold50899__1_contigs__length_10258 LN:10258 skipping SAM header line: @SQ SN:PGA_scaffold50903__1_contigs__length_12444 LN:12444 skipping SAM header line: @SQ SN:PGA_scaffold50910__1_contigs__length_10139 LN:10139 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold51207__1_contigs__length_11585 LN:11585 skipping SAM header line: @SQ SN:PGA_scaffold51214__1_contigs__length_11930 LN:11930 skipping SAM header line: @SQ SN:PGA_scaffold51239__1_contigs__length_28000 LN:28000 skipping SAM header line: @SQ SN:PGA_scaffold51251__1_contigs__length_17902 LN:17902 skipping SAM header line: @SQ SN:PGA_scaffold51297__1_contigs__length_15202 LN:15202 skipping SAM header line: @SQ SN:PGA_scaffold51302__1_contigs__length_11436 LN:11436 skipping SAM header line: @SQ SN:PGA_scaffold51330__1_contigs__length_11389 LN:11389 skipping SAM header line: @SQ SN:PGA_scaffold51344__1_contigs__length_17940 LN:17940 skipping SAM header line: @SQ SN:PGA_scaffold51353__1_contigs__length_12153 LN:12153 skipping SAM header line: @SQ SN:PGA_scaffold51355__1_contigs__length_10824 LN:10824 skipping SAM header line: @SQ SN:PGA_scaffold51375__1_contigs__length_10725 LN:10725 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold51527__1_contigs__length_12947 LN:12947 skipping SAM header line: @SQ SN:PGA_scaffold51529__1_contigs__length_14797 LN:14797 skipping SAM header line: @SQ SN:PGA_scaffold51536__1_contigs__length_21274 LN:21274 skipping SAM header line: @SQ SN:PGA_scaffold51544__1_contigs__length_32260 LN:32260 skipping SAM header line: @SQ SN:PGA_scaffold51545__1_contigs__length_14880 LN:14880 skipping SAM header line: @SQ SN:PGA_scaffold51551__1_contigs__length_17471 LN:17471 skipping SAM header line: @SQ SN:PGA_scaffold51553__1_contigs__length_15277 LN:15277 skipping SAM header line: @SQ SN:PGA_scaffold51555__1_contigs__length_12794 LN:12794 skipping SAM header line: @SQ SN:PGA_scaffold51557__1_contigs__length_12064 LN:12064 skipping SAM header line: @SQ SN:PGA_scaffold51573__1_contigs__length_14484 LN:14484 skipping SAM header line: @SQ SN:PGA_scaffold51609__1_contigs__length_11770 LN:11770 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold51682__1_contigs__length_11315 LN:11315 skipping SAM header line: @SQ SN:PGA_scaffold51684__1_contigs__length_32586 LN:32586 skipping SAM header line: @SQ SN:PGA_scaffold51686__1_contigs__length_16642 LN:16642 skipping SAM header line: @SQ SN:PGA_scaffold51693__1_contigs__length_14051 LN:14051 skipping SAM header line: @SQ SN:PGA_scaffold51694__1_contigs__length_13071 LN:13071 skipping SAM header line: @SQ SN:PGA_scaffold51695__1_contigs__length_11099 LN:11099 skipping SAM header line: @SQ SN:PGA_scaffold51704__1_contigs__length_13569 LN:13569 skipping SAM header line: @SQ SN:PGA_scaffold51712__1_contigs__length_22480 LN:22480 skipping SAM header line: @SQ SN:PGA_scaffold51713__1_contigs__length_14688 LN:14688 skipping SAM header line: @SQ SN:PGA_scaffold51724__1_contigs__length_13355 LN:13355 skipping SAM header line: @SQ SN:PGA_scaffold51730__1_contigs__length_17419 LN:17419 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold52478__1_contigs__length_11789 LN:11789 skipping SAM header line: @SQ SN:PGA_scaffold52541__1_contigs__length_11870 LN:11870 skipping SAM header line: @SQ SN:PGA_scaffold52549__1_contigs__length_10359 LN:10359 skipping SAM header line: @SQ SN:PGA_scaffold52575__1_contigs__length_11511 LN:11511 skipping SAM header line: @SQ SN:PGA_scaffold52641__1_contigs__length_10537 LN:10537 skipping SAM header line: @SQ SN:PGA_scaffold52688__1_contigs__length_10626 LN:10626 skipping SAM header line: @SQ SN:PGA_scaffold52695__1_contigs__length_11369 LN:11369 skipping SAM header line: @SQ SN:PGA_scaffold52716__1_contigs__length_10153 LN:10153 skipping SAM header line: @SQ SN:PGA_scaffold52724__1_contigs__length_10927 LN:10927 skipping SAM header line: @SQ SN:PGA_scaffold52749__1_contigs__length_11021 LN:11021 skipping SAM header line: @SQ SN:PGA_scaffold52752__1_contigs__length_10196 LN:10196 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold52863__1_contigs__length_10934 LN:10934 skipping SAM header line: @SQ SN:PGA_scaffold52864__1_contigs__length_13662 LN:13662 skipping SAM header line: @SQ SN:PGA_scaffold52869__1_contigs__length_35263 LN:35263 skipping SAM header line: @SQ SN:PGA_scaffold52870__1_contigs__length_19057 LN:19057 skipping SAM header line: @SQ SN:PGA_scaffold52871__1_contigs__length_11017 LN:11017 skipping SAM header line: @SQ SN:PGA_scaffold52872__1_contigs__length_34839 LN:34839 skipping SAM header line: @SQ SN:PGA_scaffold52873__1_contigs__length_19623 LN:19623 skipping SAM header line: @SQ SN:PGA_scaffold52877__1_contigs__length_10665 LN:10665 skipping SAM header line: @SQ SN:PGA_scaffold52880__1_contigs__length_17400 LN:17400 skipping SAM header line: @SQ SN:PGA_scaffold52881__1_contigs__length_25209 LN:25209 skipping SAM header line: @SQ SN:PGA_scaffold52888__1_contigs__length_16347 LN:16347 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold53770__1_contigs__length_45803 LN:45803 skipping SAM header line: @SQ SN:PGA_scaffold53771__1_contigs__length_16212 LN:16212 skipping SAM header line: @SQ SN:PGA_scaffold53772__1_contigs__length_21931 LN:21931 skipping SAM header line: @SQ SN:PGA_scaffold53773__1_contigs__length_15327 LN:15327 skipping SAM header line: @SQ SN:PGA_scaffold53774__1_contigs__length_13385 LN:13385 skipping SAM header line: @SQ SN:PGA_scaffold53777__1_contigs__length_11005 LN:11005 skipping SAM header line: @SQ SN:PGA_scaffold53792__1_contigs__length_11556 LN:11556 skipping SAM header line: @SQ SN:PGA_scaffold53810__1_contigs__length_10098 LN:10098 skipping SAM header line: @SQ SN:PGA_scaffold53840__1_contigs__length_10403 LN:10403 skipping SAM header line: @SQ SN:PGA_scaffold53848__1_contigs__length_10363 LN:10363 skipping SAM header line: @SQ SN:PGA_scaffold53856__1_contigs__length_10086 LN:10086 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold53980__1_contigs__length_11386 LN:11386 skipping SAM header line: @SQ SN:PGA_scaffold53982__1_contigs__length_10193 LN:10193 skipping SAM header line: @SQ SN:PGA_scaffold53987__1_contigs__length_11322 LN:11322 skipping SAM header line: @SQ SN:PGA_scaffold53989__1_contigs__length_55742 LN:55742 skipping SAM header line: @SQ SN:PGA_scaffold53990__1_contigs__length_50335 LN:50335 skipping SAM header line: @SQ SN:PGA_scaffold53991__1_contigs__length_51016 LN:51016 skipping SAM header line: @SQ SN:PGA_scaffold53992__1_contigs__length_30819 LN:30819 skipping SAM header line: @SQ SN:PGA_scaffold53993__1_contigs__length_26828 LN:26828 skipping SAM header line: @SQ SN:PGA_scaffold53994__1_contigs__length_45288 LN:45288 skipping SAM header line: @SQ SN:PGA_scaffold53995__1_contigs__length_36326 LN:36326 skipping SAM header line: @SQ SN:PGA_scaffold53996__1_contigs__length_14183 LN:14183 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold54021__1_contigs__length_10987 LN:10987 skipping SAM header line: @SQ SN:PGA_scaffold54022__1_contigs__length_25747 LN:25747 skipping SAM header line: @SQ SN:PGA_scaffold54023__1_contigs__length_15969 LN:15969 skipping SAM header line: @SQ SN:PGA_scaffold54025__1_contigs__length_16983 LN:16983 skipping SAM header line: @SQ SN:PGA_scaffold54026__1_contigs__length_10627 LN:10627 skipping SAM header line: @SQ SN:PGA_scaffold54055__1_contigs__length_15965 LN:15965 skipping SAM header line: @SQ SN:PGA_scaffold54069__1_contigs__length_15941 LN:15941 skipping SAM header line: @SQ SN:PGA_scaffold54070__1_contigs__length_11360 LN:11360 skipping SAM header line: @SQ SN:PGA_scaffold54074__1_contigs__length_16247 LN:16247 skipping SAM header line: @SQ SN:PGA_scaffold54085__1_contigs__length_10431 LN:10431 skipping SAM header line: @SQ SN:PGA_scaffold54104__1_contigs__length_10618 LN:10618 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold55681__1_contigs__length_11504 LN:11504 skipping SAM header line: @SQ SN:PGA_scaffold55687__1_contigs__length_19196 LN:19196 skipping SAM header line: @SQ SN:PGA_scaffold55689__1_contigs__length_28897 LN:28897 skipping SAM header line: @SQ SN:PGA_scaffold55697__1_contigs__length_10718 LN:10718 skipping SAM header line: @SQ SN:PGA_scaffold55700__1_contigs__length_17384 LN:17384 skipping SAM header line: @SQ SN:PGA_scaffold55710__1_contigs__length_17064 LN:17064 skipping SAM header line: @SQ SN:PGA_scaffold55711__1_contigs__length_39787 LN:39787 skipping SAM header line: @SQ SN:PGA_scaffold55712__1_contigs__length_14233 LN:14233 skipping SAM header line: @SQ SN:PGA_scaffold55713__1_contigs__length_11171 LN:11171 skipping SAM header line: @SQ SN:PGA_scaffold55714__1_contigs__length_36372 LN:36372 skipping SAM header line: @SQ SN:PGA_scaffold55715__1_contigs__length_14986 LN:14986 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold55778__1_contigs__length_10434 LN:10434 skipping SAM header line: @SQ SN:PGA_scaffold55779__1_contigs__length_10071 LN:10071 skipping SAM header line: @SQ SN:PGA_scaffold55792__1_contigs__length_11898 LN:11898 skipping SAM header line: @SQ SN:PGA_scaffold55798__1_contigs__length_11307 LN:11307 skipping SAM header line: @SQ SN:PGA_scaffold55809__1_contigs__length_14044 LN:14044 skipping SAM header line: @SQ SN:PGA_scaffold55811__1_contigs__length_14545 LN:14545 skipping SAM header line: @SQ SN:PGA_scaffold55813__1_contigs__length_16725 LN:16725 skipping SAM header line: @SQ SN:PGA_scaffold55814__1_contigs__length_15750 LN:15750 skipping SAM header line: @SQ SN:PGA_scaffold55815__1_contigs__length_10780 LN:10780 skipping SAM header line: @SQ SN:PGA_scaffold55817__1_contigs__length_14050 LN:14050 skipping SAM header line: @SQ SN:PGA_scaffold55827__1_contigs__length_17274 LN:17274 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold55939__1_contigs__length_15504 LN:15504 skipping SAM header line: @SQ SN:PGA_scaffold55973__1_contigs__length_17533 LN:17533 skipping SAM header line: @SQ SN:PGA_scaffold55979__1_contigs__length_33616 LN:33616 skipping SAM header line: @SQ SN:PGA_scaffold55985__1_contigs__length_17195 LN:17195 skipping SAM header line: @SQ SN:PGA_scaffold55988__1_contigs__length_26602 LN:26602 skipping SAM header line: @SQ SN:PGA_scaffold56009__1_contigs__length_11223 LN:11223 skipping SAM header line: @SQ SN:PGA_scaffold56014__1_contigs__length_12441 LN:12441 skipping SAM header line: @SQ SN:PGA_scaffold56016__1_contigs__length_10736 LN:10736 skipping SAM header line: @SQ SN:PGA_scaffold56019__1_contigs__length_15008 LN:15008 skipping SAM header line: @SQ SN:PGA_scaffold56024__1_contigs__length_10541 LN:10541 skipping SAM header line: @SQ SN:PGA_scaffold56026__1_contigs__length_29839 LN:29839 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold56245__1_contigs__length_21244 LN:21244 skipping SAM header line: @SQ SN:PGA_scaffold56261__1_contigs__length_13085 LN:13085 skipping SAM header line: @SQ SN:PGA_scaffold56268__1_contigs__length_16080 LN:16080 skipping SAM header line: @SQ SN:PGA_scaffold56275__1_contigs__length_11474 LN:11474 skipping SAM header line: @SQ SN:PGA_scaffold56308__1_contigs__length_11602 LN:11602 skipping SAM header line: @SQ SN:PGA_scaffold56311__1_contigs__length_10546 LN:10546 skipping SAM header line: @SQ SN:PGA_scaffold56313__1_contigs__length_11286 LN:11286 skipping SAM header line: @SQ SN:PGA_scaffold56319__1_contigs__length_13227 LN:13227 skipping SAM header line: @SQ SN:PGA_scaffold56338__1_contigs__length_12796 LN:12796 skipping SAM header line: @SQ SN:PGA_scaffold56341__1_contigs__length_12059 LN:12059 skipping SAM header line: @SQ SN:PGA_scaffold56347__1_contigs__length_13124 LN:13124 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57086__1_contigs__length_15416 LN:15416 skipping SAM header line: @SQ SN:PGA_scaffold57091__1_contigs__length_11141 LN:11141 skipping SAM header line: @SQ SN:PGA_scaffold57097__1_contigs__length_26486 LN:26486 skipping SAM header line: @SQ SN:PGA_scaffold57101__1_contigs__length_12587 LN:12587 skipping SAM header line: @SQ SN:PGA_scaffold57103__1_contigs__length_10399 LN:10399 skipping SAM header line: @SQ SN:PGA_scaffold57106__1_contigs__length_11353 LN:11353 skipping SAM header line: @SQ SN:PGA_scaffold57108__1_contigs__length_20164 LN:20164 skipping SAM header line: @SQ SN:PGA_scaffold57125__1_contigs__length_17547 LN:17547 skipping SAM header line: @SQ SN:PGA_scaffold57133__1_contigs__length_26233 LN:26233 skipping SAM header line: @SQ SN:PGA_scaffold57139__1_contigs__length_21298 LN:21298 skipping SAM header line: @SQ SN:PGA_scaffold57144__1_contigs__length_24604 LN:24604 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57216__1_contigs__length_15945 LN:15945 skipping SAM header line: @SQ SN:PGA_scaffold57220__1_contigs__length_13709 LN:13709 skipping SAM header line: @SQ SN:PGA_scaffold57223__1_contigs__length_11171 LN:11171 skipping SAM header line: @SQ SN:PGA_scaffold57230__1_contigs__length_11444 LN:11444 skipping SAM header line: @SQ SN:PGA_scaffold57233__1_contigs__length_23586 LN:23586 skipping SAM header line: @SQ SN:PGA_scaffold57244__1_contigs__length_12199 LN:12199 skipping SAM header line: @SQ SN:PGA_scaffold57245__1_contigs__length_14215 LN:14215 skipping SAM header line: @SQ SN:PGA_scaffold57246__1_contigs__length_10239 LN:10239 skipping SAM header line: @SQ SN:PGA_scaffold57261__1_contigs__length_16257 LN:16257 skipping SAM header line: @SQ SN:PGA_scaffold57268__1_contigs__length_12891 LN:12891 skipping SAM header line: @SQ SN:PGA_scaffold57284__1_contigs__length_13129 LN:13129 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold58260__1_contigs__length_12467 LN:12467 skipping SAM header line: @SQ SN:PGA_scaffold58261__1_contigs__length_10609 LN:10609 skipping SAM header line: @SQ SN:PGA_scaffold58264__1_contigs__length_33661 LN:33661 skipping SAM header line: @SQ SN:PGA_scaffold58265__1_contigs__length_14960 LN:14960 skipping SAM header line: @SQ SN:PGA_scaffold58266__1_contigs__length_10850 LN:10850 skipping SAM header line: @SQ SN:PGA_scaffold58270__1_contigs__length_29722 LN:29722 skipping SAM header line: @SQ SN:PGA_scaffold58275__1_contigs__length_20529 LN:20529 skipping SAM header line: @SQ SN:PGA_scaffold58283__1_contigs__length_21704 LN:21704 skipping SAM header line: @SQ SN:PGA_scaffold58284__1_contigs__length_33826 LN:33826 skipping SAM header line: @SQ SN:PGA_scaffold58290__1_contigs__length_11324 LN:11324 skipping SAM header line: @SQ SN:PGA_scaffold58294__1_contigs__length_16400 LN:16400 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold58333__1_contigs__length_13330 LN:13330 skipping SAM header line: @SQ SN:PGA_scaffold58343__1_contigs__length_19353 LN:19353 skipping SAM header line: @SQ SN:PGA_scaffold58345__1_contigs__length_21782 LN:21782 skipping SAM header line: @SQ SN:PGA_scaffold58348__1_contigs__length_12345 LN:12345 skipping SAM header line: @SQ SN:PGA_scaffold58352__1_contigs__length_14446 LN:14446 skipping SAM header line: @SQ SN:PGA_scaffold58353__1_contigs__length_13485 LN:13485 skipping SAM header line: @SQ SN:PGA_scaffold58361__1_contigs__length_52751 LN:52751 skipping SAM header line: @SQ SN:PGA_scaffold58366__1_contigs__length_37326 LN:37326 skipping SAM header line: @SQ SN:PGA_scaffold58370__1_contigs__length_11988 LN:11988 skipping SAM header line: @SQ SN:PGA_scaffold58371__1_contigs__length_12863 LN:12863 skipping SAM header line: @SQ SN:PGA_scaffold58374__1_contigs__length_15700 LN:15700 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold58405__1_contigs__length_25074 LN:25074 skipping SAM header line: @SQ SN:PGA_scaffold58406__1_contigs__length_39981 LN:39981 skipping SAM header line: @SQ SN:PGA_scaffold58408__1_contigs__length_51130 LN:51130 skipping SAM header line: @SQ SN:PGA_scaffold58409__1_contigs__length_29998 LN:29998 skipping SAM header line: @SQ SN:PGA_scaffold58411__1_contigs__length_11196 LN:11196 skipping SAM header line: @SQ SN:PGA_scaffold58413__1_contigs__length_24633 LN:24633 skipping SAM header line: @SQ SN:PGA_scaffold58414__1_contigs__length_31140 LN:31140 skipping SAM header line: @SQ SN:PGA_scaffold58420__1_contigs__length_10267 LN:10267 skipping SAM header line: @SQ SN:PGA_scaffold58423__1_contigs__length_47054 LN:47054 skipping SAM header line: @SQ SN:PGA_scaffold58431__1_contigs__length_30555 LN:30555 skipping SAM header line: @SQ SN:PGA_scaffold58437__1_contigs__length_27914 LN:27914 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold61512__1_contigs__length_19257 LN:19257 skipping SAM header line: @SQ SN:PGA_scaffold61516__1_contigs__length_14448 LN:14448 skipping SAM header line: @SQ SN:PGA_scaffold61517__1_contigs__length_18258 LN:18258 skipping SAM header line: @SQ SN:PGA_scaffold61518__1_contigs__length_14582 LN:14582 skipping SAM header line: @SQ SN:PGA_scaffold61530__1_contigs__length_13411 LN:13411 skipping SAM header line: @SQ SN:PGA_scaffold61545__1_contigs__length_11393 LN:11393 skipping SAM header line: @SQ SN:PGA_scaffold61547__1_contigs__length_13960 LN:13960 skipping SAM header line: @SQ SN:PGA_scaffold61555__1_contigs__length_16857 LN:16857 skipping SAM header line: @SQ SN:PGA_scaffold61559__1_contigs__length_13176 LN:13176 skipping SAM header line: @SQ SN:PGA_scaffold61563__1_contigs__length_12364 LN:12364 skipping SAM header line: @SQ SN:PGA_scaffold61565__1_contigs__length_12663 LN:12663 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold61593__1_contigs__length_12227 LN:12227 skipping SAM header line: @SQ SN:PGA_scaffold61597__1_contigs__length_16686 LN:16686 skipping SAM header line: @SQ SN:PGA_scaffold61599__1_contigs__length_15594 LN:15594 skipping SAM header line: @SQ SN:PGA_scaffold61600__1_contigs__length_13886 LN:13886 skipping SAM header line: @SQ SN:PGA_scaffold61601__1_contigs__length_22025 LN:22025 skipping SAM header line: @SQ SN:PGA_scaffold61603__1_contigs__length_11385 LN:11385 skipping SAM header line: @SQ SN:PGA_scaffold61613__1_contigs__length_25314 LN:25314 skipping SAM header line: @SQ SN:PGA_scaffold61614__1_contigs__length_28466 LN:28466 skipping SAM header line: @SQ SN:PGA_scaffold61615__1_contigs__length_40934 LN:40934 skipping SAM header line: @SQ SN:PGA_scaffold61616__1_contigs__length_20028 LN:20028 skipping SAM header line: @SQ SN:PGA_scaffold61618__1_contigs__length_16679 LN:16679 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64407__1_contigs__length_10817 LN:10817 skipping SAM header line: @SQ SN:PGA_scaffold64413__1_contigs__length_24489 LN:24489 skipping SAM header line: @SQ SN:PGA_scaffold64418__1_contigs__length_13923 LN:13923 skipping SAM header line: @SQ SN:PGA_scaffold64420__1_contigs__length_10191 LN:10191 skipping SAM header line: @SQ SN:PGA_scaffold64424__1_contigs__length_18909 LN:18909 skipping SAM header line: @SQ SN:PGA_scaffold64425__1_contigs__length_10870 LN:10870 skipping SAM header line: @SQ SN:PGA_scaffold64426__1_contigs__length_49077 LN:49077 skipping SAM header line: @SQ SN:PGA_scaffold64437__1_contigs__length_13251 LN:13251 skipping SAM header line: @SQ SN:PGA_scaffold64445__1_contigs__length_19583 LN:19583 skipping SAM header line: @SQ SN:PGA_scaffold64446__1_contigs__length_12816 LN:12816 skipping SAM header line: @SQ SN:PGA_scaffold64451__1_contigs__length_18104 LN:18104 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64471__1_contigs__length_34271 LN:34271 skipping SAM header line: @SQ SN:PGA_scaffold64472__1_contigs__length_17024 LN:17024 skipping SAM header line: @SQ SN:PGA_scaffold64473__1_contigs__length_33437 LN:33437 skipping SAM header line: @SQ SN:PGA_scaffold64474__1_contigs__length_10658 LN:10658 skipping SAM header line: @SQ SN:PGA_scaffold64475__1_contigs__length_12937 LN:12937 skipping SAM header line: @SQ SN:PGA_scaffold64482__1_contigs__length_24406 LN:24406 skipping SAM header line: @SQ SN:PGA_scaffold64491__1_contigs__length_10063 LN:10063 skipping SAM header line: @SQ SN:PGA_scaffold64496__1_contigs__length_12925 LN:12925 skipping SAM header line: @SQ SN:PGA_scaffold64511__1_contigs__length_10348 LN:10348 skipping SAM header line: @SQ SN:PGA_scaffold64518__1_contigs__length_11803 LN:11803 skipping SAM header line: @SQ SN:PGA_scaffold64529__1_contigs__length_33564 LN:33564 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64601__1_contigs__length_25922 LN:25922 skipping SAM header line: @SQ SN:PGA_scaffold64602__1_contigs__length_28737 LN:28737 skipping SAM header line: @SQ SN:PGA_scaffold64604__1_contigs__length_30801 LN:30801 skipping SAM header line: @SQ SN:PGA_scaffold64605__1_contigs__length_26360 LN:26360 skipping SAM header line: @SQ SN:PGA_scaffold64606__1_contigs__length_35651 LN:35651 skipping SAM header line: @SQ SN:PGA_scaffold64607__1_contigs__length_70013 LN:70013 skipping SAM header line: @SQ SN:PGA_scaffold64608__1_contigs__length_49602 LN:49602 skipping SAM header line: @SQ SN:PGA_scaffold64609__1_contigs__length_21660 LN:21660 skipping SAM header line: @SQ SN:PGA_scaffold64613__1_contigs__length_42419 LN:42419 skipping SAM header line: @SQ SN:PGA_scaffold64614__1_contigs__length_26585 LN:26585 skipping SAM header line: @SQ SN:PGA_scaffold64615__1_contigs__length_27488 LN:27488 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold65322__1_contigs__length_27853 LN:27853 skipping SAM header line: @SQ SN:PGA_scaffold65325__1_contigs__length_12743 LN:12743 skipping SAM header line: @SQ SN:PGA_scaffold65326__1_contigs__length_16568 LN:16568 skipping SAM header line: @SQ SN:PGA_scaffold65328__1_contigs__length_13003 LN:13003 skipping SAM header line: @SQ SN:PGA_scaffold65329__1_contigs__length_30096 LN:30096 skipping SAM header line: @SQ SN:PGA_scaffold65331__1_contigs__length_16109 LN:16109 skipping SAM header line: @SQ SN:PGA_scaffold65332__1_contigs__length_26100 LN:26100 skipping SAM header line: @SQ SN:PGA_scaffold65334__1_contigs__length_27707 LN:27707 skipping SAM header line: @SQ SN:PGA_scaffold65342__1_contigs__length_11072 LN:11072 skipping SAM header line: @SQ SN:PGA_scaffold65343__1_contigs__length_19992 LN:19992 skipping SAM header line: @SQ SN:PGA_scaffold65345__1_contigs__length_22960 LN:22960 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold65404__1_contigs__length_19808 LN:19808 skipping SAM header line: @SQ SN:PGA_scaffold65406__1_contigs__length_15764 LN:15764 skipping SAM header line: @SQ SN:PGA_scaffold65410__1_contigs__length_18666 LN:18666 skipping SAM header line: @SQ SN:PGA_scaffold65427__1_contigs__length_16157 LN:16157 skipping SAM header line: @SQ SN:PGA_scaffold65428__1_contigs__length_13601 LN:13601 skipping SAM header line: @SQ SN:PGA_scaffold65433__1_contigs__length_18232 LN:18232 skipping SAM header line: @SQ SN:PGA_scaffold65456__1_contigs__length_14439 LN:14439 skipping SAM header line: @SQ SN:PGA_scaffold65460__1_contigs__length_18068 LN:18068 skipping SAM header line: @SQ SN:PGA_scaffold65461__1_contigs__length_37665 LN:37665 skipping SAM header line: @SQ SN:PGA_scaffold65463__1_contigs__length_10091 LN:10091 skipping SAM header line: @SQ SN:PGA_scaffold65465__1_contigs__length_31799 LN:31799 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold65508__1_contigs__length_27459 LN:27459 skipping SAM header line: @SQ SN:PGA_scaffold65509__1_contigs__length_28239 LN:28239 skipping SAM header line: @SQ SN:PGA_scaffold65510__1_contigs__length_14919 LN:14919 skipping SAM header line: @SQ SN:PGA_scaffold65513__1_contigs__length_10904 LN:10904 skipping SAM header line: @SQ SN:PGA_scaffold65517__1_contigs__length_15888 LN:15888 skipping SAM header line: @SQ SN:PGA_scaffold65518__1_contigs__length_17344 LN:17344 skipping SAM header line: @SQ SN:PGA_scaffold65519__1_contigs__length_25989 LN:25989 skipping SAM header line: @SQ SN:PGA_scaffold65524__1_contigs__length_29654 LN:29654 skipping SAM header line: @SQ SN:PGA_scaffold65529__1_contigs__length_14937 LN:14937 skipping SAM header line: @SQ SN:PGA_scaffold65532__1_contigs__length_13710 LN:13710 skipping SAM header line: @SQ SN:PGA_scaffold65536__1_contigs__length_21189 LN:21189 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold66227__1_contigs__length_18370 LN:18370 skipping SAM header line: @SQ SN:PGA_scaffold66228__1_contigs__length_11413 LN:11413 skipping SAM header line: @SQ SN:PGA_scaffold66231__1_contigs__length_17155 LN:17155 skipping SAM header line: @SQ SN:PGA_scaffold66249__1_contigs__length_10879 LN:10879 skipping SAM header line: @SQ SN:PGA_scaffold66255__1_contigs__length_16411 LN:16411 skipping SAM header line: @SQ SN:PGA_scaffold66275__1_contigs__length_11711 LN:11711 skipping SAM header line: @SQ SN:PGA_scaffold66276__1_contigs__length_39820 LN:39820 skipping SAM header line: @SQ SN:PGA_scaffold66279__1_contigs__length_13482 LN:13482 skipping SAM header line: @SQ SN:PGA_scaffold66293__1_contigs__length_33304 LN:33304 skipping SAM header line: @SQ SN:PGA_scaffold66299__1_contigs__length_14420 LN:14420 skipping SAM header line: @SQ SN:PGA_scaffold66312__1_contigs__length_23465 LN:23465 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold66348__1_contigs__length_24727 LN:24727 skipping SAM header line: @SQ SN:PGA_scaffold66351__1_contigs__length_16809 LN:16809 skipping SAM header line: @SQ SN:PGA_scaffold66354__1_contigs__length_13066 LN:13066 skipping SAM header line: @SQ SN:PGA_scaffold66370__1_contigs__length_14947 LN:14947 skipping SAM header line: @SQ SN:PGA_scaffold66372__1_contigs__length_10922 LN:10922 skipping SAM header line: @SQ SN:PGA_scaffold66373__1_contigs__length_11820 LN:11820 skipping SAM header line: @SQ SN:PGA_scaffold66379__1_contigs__length_24336 LN:24336 skipping SAM header line: @SQ SN:PGA_scaffold66380__1_contigs__length_16348 LN:16348 skipping SAM header line: @SQ SN:PGA_scaffold66384__1_contigs__length_11444 LN:11444 skipping SAM header line: @SQ SN:PGA_scaffold66389__1_contigs__length_12655 LN:12655 skipping SAM header line: @SQ SN:PGA_scaffold66391__1_contigs__length_17056 LN:17056 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold67258__1_contigs__length_14724 LN:14724 skipping SAM header line: @SQ SN:PGA_scaffold67259__1_contigs__length_15511 LN:15511 skipping SAM header line: @SQ SN:PGA_scaffold67260__1_contigs__length_10570 LN:10570 skipping SAM header line: @SQ SN:PGA_scaffold67261__1_contigs__length_29079 LN:29079 skipping SAM header line: @SQ SN:PGA_scaffold67269__1_contigs__length_23124 LN:23124 skipping SAM header line: @SQ SN:PGA_scaffold67272__1_contigs__length_13313 LN:13313 skipping SAM header line: @SQ SN:PGA_scaffold67279__1_contigs__length_19060 LN:19060 skipping SAM header line: @SQ SN:PGA_scaffold67280__1_contigs__length_31885 LN:31885 skipping SAM header line: @SQ SN:PGA_scaffold67288__1_contigs__length_10930 LN:10930 skipping SAM header line: @SQ SN:PGA_scaffold67294__1_contigs__length_50832 LN:50832 skipping SAM header line: @SQ SN:PGA_scaffold67297__1_contigs__length_13163 LN:13163 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold67338__1_contigs__length_10772 LN:10772 skipping SAM header line: @SQ SN:PGA_scaffold67342__1_contigs__length_17186 LN:17186 skipping SAM header line: @SQ SN:PGA_scaffold67345__1_contigs__length_11700 LN:11700 skipping SAM header line: @SQ SN:PGA_scaffold67346__1_contigs__length_32090 LN:32090 skipping SAM header line: @SQ SN:PGA_scaffold67352__1_contigs__length_20103 LN:20103 skipping SAM header line: @SQ SN:PGA_scaffold67354__1_contigs__length_12581 LN:12581 skipping SAM header line: @SQ SN:PGA_scaffold67358__1_contigs__length_24187 LN:24187 skipping SAM header line: @SQ SN:PGA_scaffold67362__1_contigs__length_18900 LN:18900 skipping SAM header line: @SQ SN:PGA_scaffold67365__1_contigs__length_13635 LN:13635 skipping SAM header line: @SQ SN:PGA_scaffold67367__1_contigs__length_29955 LN:29955 skipping SAM header line: @SQ SN:PGA_scaffold67370__1_contigs__length_14467 LN:14467 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold67401__1_contigs__length_21931 LN:21931 skipping SAM header line: @SQ SN:PGA_scaffold67407__1_contigs__length_73205 LN:73205 skipping SAM header line: @SQ SN:PGA_scaffold67409__1_contigs__length_30272 LN:30272 skipping SAM header line: @SQ SN:PGA_scaffold67413__1_contigs__length_20291 LN:20291 skipping SAM header line: @SQ SN:PGA_scaffold67415__1_contigs__length_21745 LN:21745 skipping SAM header line: @SQ SN:PGA_scaffold67421__1_contigs__length_10999 LN:10999 skipping SAM header line: @SQ SN:PGA_scaffold67432__1_contigs__length_10154 LN:10154 skipping SAM header line: @SQ SN:PGA_scaffold67437__1_contigs__length_10097 LN:10097 skipping SAM header line: @SQ SN:PGA_scaffold67438__1_contigs__length_17579 LN:17579 skipping SAM header line: @SQ SN:PGA_scaffold67439__1_contigs__length_14696 LN:14696 skipping SAM header line: @SQ SN:PGA_scaffold67446__1_contigs__length_12030 LN:12030 skipping SAM header line: @SQ 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SN:PGA_scaffold68049__1_contigs__length_34344 LN:34344 skipping SAM header line: @SQ SN:PGA_scaffold68053__1_contigs__length_31000 LN:31000 skipping SAM header line: @SQ SN:PGA_scaffold68054__1_contigs__length_26015 LN:26015 skipping SAM header line: @SQ SN:PGA_scaffold68058__1_contigs__length_13335 LN:13335 skipping SAM header line: @SQ SN:PGA_scaffold68059__1_contigs__length_11745 LN:11745 skipping SAM header line: @SQ SN:PGA_scaffold68067__1_contigs__length_12148 LN:12148 skipping SAM header line: @SQ SN:PGA_scaffold68069__1_contigs__length_10546 LN:10546 skipping SAM header line: @SQ SN:PGA_scaffold68071__1_contigs__length_10712 LN:10712 skipping SAM header line: @SQ SN:PGA_scaffold68075__1_contigs__length_25456 LN:25456 skipping SAM header line: @SQ SN:PGA_scaffold68077__1_contigs__length_14893 LN:14893 skipping SAM header line: @SQ SN:PGA_scaffold68092__1_contigs__length_33414 LN:33414 skipping SAM header line: @SQ SN:PGA_scaffold68094__1_contigs__length_26524 LN:26524 skipping SAM header line: @SQ SN:PGA_scaffold68099__1_contigs__length_15938 LN:15938 skipping SAM header line: @SQ SN:PGA_scaffold68100__1_contigs__length_14992 LN:14992 skipping SAM header line: @SQ SN:PGA_scaffold68102__1_contigs__length_15080 LN:15080 skipping SAM header line: @SQ SN:PGA_scaffold68106__1_contigs__length_11446 LN:11446 skipping SAM header line: @SQ SN:PGA_scaffold68108__1_contigs__length_11156 LN:11156 skipping SAM header line: @SQ SN:PGA_scaffold68116__1_contigs__length_17061 LN:17061 skipping SAM header line: @SQ SN:PGA_scaffold68118__1_contigs__length_11257 LN:11257 skipping SAM header line: @SQ SN:PGA_scaffold68130__1_contigs__length_14165 LN:14165 skipping SAM header line: @SQ SN:PGA_scaffold68142__1_contigs__length_10694 LN:10694 skipping SAM header line: @SQ SN:PGA_scaffold68150__1_contigs__length_50783 LN:50783 skipping SAM header line: @SQ SN:PGA_scaffold68157__1_contigs__length_34106 LN:34106 skipping SAM header line: @SQ SN:PGA_scaffold68161__1_contigs__length_17929 LN:17929 skipping SAM header line: @SQ SN:PGA_scaffold68164__1_contigs__length_14483 LN:14483 skipping SAM header line: @SQ SN:PGA_scaffold68170__1_contigs__length_15919 LN:15919 skipping SAM header line: @SQ SN:PGA_scaffold68173__1_contigs__length_11823 LN:11823 skipping SAM header line: @SQ SN:PGA_scaffold68183__1_contigs__length_13945 LN:13945 skipping SAM header line: @SQ SN:PGA_scaffold68184__1_contigs__length_41355 LN:41355 skipping SAM header line: @SQ SN:PGA_scaffold68192__1_contigs__length_14261 LN:14261 skipping SAM header line: @SQ SN:PGA_scaffold68193__1_contigs__length_46031 LN:46031 skipping SAM header line: @SQ SN:PGA_scaffold68195__1_contigs__length_13592 LN:13592 skipping SAM header line: @SQ SN:PGA_scaffold68203__1_contigs__length_16469 LN:16469 skipping SAM header line: @SQ SN:PGA_scaffold68204__1_contigs__length_21746 LN:21746 skipping SAM header line: @SQ SN:PGA_scaffold68205__1_contigs__length_30954 LN:30954 skipping SAM header line: @SQ SN:PGA_scaffold68209__1_contigs__length_24164 LN:24164 skipping SAM header line: @SQ SN:PGA_scaffold68216__1_contigs__length_14378 LN:14378 skipping SAM header line: @SQ SN:PGA_scaffold68218__1_contigs__length_13758 LN:13758 skipping SAM header line: @SQ SN:PGA_scaffold68222__1_contigs__length_15256 LN:15256 skipping SAM header line: @SQ SN:PGA_scaffold68225__1_contigs__length_13708 LN:13708 skipping SAM header line: @SQ SN:PGA_scaffold68226__1_contigs__length_11508 LN:11508 skipping SAM header line: @SQ SN:PGA_scaffold68228__1_contigs__length_14315 LN:14315 skipping SAM header line: @SQ SN:PGA_scaffold68230__1_contigs__length_15785 LN:15785 skipping SAM header line: @SQ SN:PGA_scaffold68236__1_contigs__length_13511 LN:13511 skipping SAM header line: @SQ SN:PGA_scaffold68241__1_contigs__length_16089 LN:16089 skipping SAM header line: @SQ SN:PGA_scaffold68242__1_contigs__length_10917 LN:10917 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68272__1_contigs__length_21275 LN:21275 skipping SAM header line: @SQ SN:PGA_scaffold68273__1_contigs__length_46075 LN:46075 skipping SAM header line: @SQ SN:PGA_scaffold68274__1_contigs__length_63866 LN:63866 skipping SAM header line: @SQ SN:PGA_scaffold68275__1_contigs__length_20919 LN:20919 skipping SAM header line: @SQ SN:PGA_scaffold68283__1_contigs__length_24754 LN:24754 skipping SAM header line: @SQ SN:PGA_scaffold68284__1_contigs__length_23423 LN:23423 skipping SAM header line: @SQ SN:PGA_scaffold68295__1_contigs__length_23211 LN:23211 skipping SAM header line: @SQ SN:PGA_scaffold68298__1_contigs__length_11817 LN:11817 skipping SAM header line: @SQ SN:PGA_scaffold68304__1_contigs__length_19247 LN:19247 skipping SAM header line: @SQ SN:PGA_scaffold68307__1_contigs__length_14020 LN:14020 skipping SAM header line: @SQ SN:PGA_scaffold68308__1_contigs__length_10949 LN:10949 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68344__1_contigs__length_21157 LN:21157 skipping SAM header line: @SQ SN:PGA_scaffold68347__1_contigs__length_10227 LN:10227 skipping SAM header line: @SQ SN:PGA_scaffold68349__1_contigs__length_27523 LN:27523 skipping SAM header line: @SQ SN:PGA_scaffold68355__1_contigs__length_44244 LN:44244 skipping SAM header line: @SQ SN:PGA_scaffold68357__1_contigs__length_26793 LN:26793 skipping SAM header line: @SQ SN:PGA_scaffold68358__1_contigs__length_25963 LN:25963 skipping SAM header line: @SQ SN:PGA_scaffold68363__1_contigs__length_11934 LN:11934 skipping SAM header line: @SQ SN:PGA_scaffold68364__1_contigs__length_27979 LN:27979 skipping SAM header line: @SQ SN:PGA_scaffold68372__1_contigs__length_24098 LN:24098 skipping SAM header line: @SQ SN:PGA_scaffold68373__1_contigs__length_13660 LN:13660 skipping SAM header line: @SQ SN:PGA_scaffold68378__1_contigs__length_16676 LN:16676 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68413__1_contigs__length_11384 LN:11384 skipping SAM header line: @SQ SN:PGA_scaffold68419__1_contigs__length_27677 LN:27677 skipping SAM header line: @SQ SN:PGA_scaffold68425__1_contigs__length_32148 LN:32148 skipping SAM header line: @SQ SN:PGA_scaffold68426__1_contigs__length_11324 LN:11324 skipping SAM header line: @SQ SN:PGA_scaffold68430__1_contigs__length_21994 LN:21994 skipping SAM header line: @SQ SN:PGA_scaffold68431__1_contigs__length_13242 LN:13242 skipping SAM header line: @SQ SN:PGA_scaffold68437__1_contigs__length_19513 LN:19513 skipping SAM header line: @SQ SN:PGA_scaffold68438__1_contigs__length_17421 LN:17421 skipping SAM header line: @SQ SN:PGA_scaffold68439__1_contigs__length_18726 LN:18726 skipping SAM header line: @SQ SN:PGA_scaffold68446__1_contigs__length_20675 LN:20675 skipping SAM header line: @SQ SN:PGA_scaffold68448__1_contigs__length_13184 LN:13184 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68844__1_contigs__length_19621 LN:19621 skipping SAM header line: @SQ SN:PGA_scaffold68845__1_contigs__length_27874 LN:27874 skipping SAM header line: @SQ SN:PGA_scaffold68849__1_contigs__length_42390 LN:42390 skipping SAM header line: @SQ SN:PGA_scaffold68855__1_contigs__length_38462 LN:38462 skipping SAM header line: @SQ SN:PGA_scaffold68858__1_contigs__length_37103 LN:37103 skipping SAM header line: @SQ SN:PGA_scaffold68862__1_contigs__length_25180 LN:25180 skipping SAM header line: @SQ SN:PGA_scaffold68866__1_contigs__length_15500 LN:15500 skipping SAM header line: @SQ SN:PGA_scaffold68867__1_contigs__length_29477 LN:29477 skipping SAM header line: @SQ SN:PGA_scaffold68876__1_contigs__length_15966 LN:15966 skipping SAM header line: @SQ SN:PGA_scaffold68878__1_contigs__length_23378 LN:23378 skipping SAM header line: @SQ SN:PGA_scaffold68883__1_contigs__length_12697 LN:12697 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68932__1_contigs__length_23589 LN:23589 skipping SAM header line: @SQ SN:PGA_scaffold68933__1_contigs__length_15943 LN:15943 skipping SAM header line: @SQ SN:PGA_scaffold68938__1_contigs__length_15636 LN:15636 skipping SAM header line: @SQ SN:PGA_scaffold68939__1_contigs__length_20900 LN:20900 skipping SAM header line: @SQ SN:PGA_scaffold68942__1_contigs__length_12458 LN:12458 skipping SAM header line: @SQ SN:PGA_scaffold68943__1_contigs__length_27006 LN:27006 skipping SAM header line: @SQ SN:PGA_scaffold68944__1_contigs__length_26741 LN:26741 skipping SAM header line: @SQ SN:PGA_scaffold68947__1_contigs__length_10936 LN:10936 skipping SAM header line: @SQ SN:PGA_scaffold68948__1_contigs__length_15370 LN:15370 skipping SAM header line: @SQ SN:PGA_scaffold68952__1_contigs__length_14184 LN:14184 skipping SAM header line: @SQ SN:PGA_scaffold68953__1_contigs__length_10104 LN:10104 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69025__1_contigs__length_21443 LN:21443 skipping SAM header line: @SQ SN:PGA_scaffold69031__1_contigs__length_49096 LN:49096 skipping SAM header line: @SQ SN:PGA_scaffold69036__1_contigs__length_10931 LN:10931 skipping SAM header line: @SQ SN:PGA_scaffold69039__1_contigs__length_29725 LN:29725 skipping SAM header line: @SQ SN:PGA_scaffold69046__1_contigs__length_29699 LN:29699 skipping SAM header line: @SQ SN:PGA_scaffold69048__1_contigs__length_14639 LN:14639 skipping SAM header line: @SQ SN:PGA_scaffold69053__1_contigs__length_10018 LN:10018 skipping SAM header line: @SQ SN:PGA_scaffold69056__1_contigs__length_16920 LN:16920 skipping SAM header line: @SQ SN:PGA_scaffold69057__1_contigs__length_12123 LN:12123 skipping SAM header line: @SQ SN:PGA_scaffold69064__1_contigs__length_30263 LN:30263 skipping SAM header line: @SQ SN:PGA_scaffold69066__1_contigs__length_41967 LN:41967 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69099__1_contigs__length_56136 LN:56136 skipping SAM header line: @SQ SN:PGA_scaffold69103__1_contigs__length_23145 LN:23145 skipping SAM header line: @SQ SN:PGA_scaffold69107__1_contigs__length_36690 LN:36690 skipping SAM header line: @SQ SN:PGA_scaffold69108__1_contigs__length_12404 LN:12404 skipping SAM header line: @SQ SN:PGA_scaffold69113__1_contigs__length_18132 LN:18132 skipping SAM header line: @SQ SN:PGA_scaffold69115__1_contigs__length_15937 LN:15937 skipping SAM header line: @SQ SN:PGA_scaffold69123__1_contigs__length_14399 LN:14399 skipping SAM header line: @SQ SN:PGA_scaffold69124__1_contigs__length_17133 LN:17133 skipping SAM header line: @SQ SN:PGA_scaffold69130__1_contigs__length_52115 LN:52115 skipping SAM header line: @SQ SN:PGA_scaffold69131__1_contigs__length_10220 LN:10220 skipping SAM header line: @SQ SN:PGA_scaffold69135__1_contigs__length_13963 LN:13963 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69193__1_contigs__length_11714 LN:11714 skipping SAM header line: @SQ SN:PGA_scaffold69199__1_contigs__length_27933 LN:27933 skipping SAM header line: @SQ SN:PGA_scaffold69200__1_contigs__length_19344 LN:19344 skipping SAM header line: @SQ SN:PGA_scaffold69202__1_contigs__length_19028 LN:19028 skipping SAM header line: @SQ SN:PGA_scaffold69217__1_contigs__length_20211 LN:20211 skipping SAM header line: @SQ SN:PGA_scaffold69225__1_contigs__length_14733 LN:14733 skipping SAM header line: @SQ SN:PGA_scaffold69232__1_contigs__length_20771 LN:20771 skipping SAM header line: @SQ SN:PGA_scaffold69243__1_contigs__length_23878 LN:23878 skipping SAM header line: @SQ SN:PGA_scaffold69247__1_contigs__length_16374 LN:16374 skipping SAM header line: @SQ SN:PGA_scaffold69248__1_contigs__length_21363 LN:21363 skipping SAM header line: @SQ SN:PGA_scaffold69250__1_contigs__length_10644 LN:10644 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69292__1_contigs__length_13647 LN:13647 skipping SAM header line: @SQ SN:PGA_scaffold69294__1_contigs__length_33022 LN:33022 skipping SAM header line: @SQ SN:PGA_scaffold69296__1_contigs__length_14922 LN:14922 skipping SAM header line: @SQ SN:PGA_scaffold69299__1_contigs__length_11048 LN:11048 skipping SAM header line: @SQ SN:PGA_scaffold69301__1_contigs__length_12152 LN:12152 skipping SAM header line: @SQ SN:PGA_scaffold69306__1_contigs__length_12978 LN:12978 skipping SAM header line: @SQ SN:PGA_scaffold69310__1_contigs__length_18259 LN:18259 skipping SAM header line: @SQ SN:PGA_scaffold69311__1_contigs__length_34239 LN:34239 skipping SAM header line: @SQ SN:PGA_scaffold69315__1_contigs__length_15505 LN:15505 skipping SAM header line: @SQ SN:PGA_scaffold69316__1_contigs__length_24525 LN:24525 skipping SAM header line: @SQ SN:PGA_scaffold69318__1_contigs__length_21365 LN:21365 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69749__1_contigs__length_15526 LN:15526 skipping SAM header line: @SQ SN:PGA_scaffold69750__1_contigs__length_20950 LN:20950 skipping SAM header line: @SQ SN:PGA_scaffold69752__1_contigs__length_25204 LN:25204 skipping SAM header line: @SQ SN:PGA_scaffold69754__1_contigs__length_11668 LN:11668 skipping SAM header line: @SQ SN:PGA_scaffold69757__1_contigs__length_13015 LN:13015 skipping SAM header line: @SQ SN:PGA_scaffold69766__1_contigs__length_10093 LN:10093 skipping SAM header line: @SQ SN:PGA_scaffold69767__1_contigs__length_14271 LN:14271 skipping SAM header line: @SQ SN:PGA_scaffold69769__1_contigs__length_67326 LN:67326 skipping SAM header line: @SQ SN:PGA_scaffold69772__1_contigs__length_28251 LN:28251 skipping SAM header line: @SQ SN:PGA_scaffold69777__1_contigs__length_11173 LN:11173 skipping SAM header line: @SQ SN:PGA_scaffold69780__1_contigs__length_36085 LN:36085 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69810__1_contigs__length_17927 LN:17927 skipping SAM header line: @SQ SN:PGA_scaffold69817__1_contigs__length_16482 LN:16482 skipping SAM header line: @SQ SN:PGA_scaffold69818__1_contigs__length_17331 LN:17331 skipping SAM header line: @SQ SN:PGA_scaffold69820__1_contigs__length_11208 LN:11208 skipping SAM header line: @SQ SN:PGA_scaffold69826__1_contigs__length_27192 LN:27192 skipping SAM header line: @SQ SN:PGA_scaffold69827__1_contigs__length_14106 LN:14106 skipping SAM header line: @SQ SN:PGA_scaffold69829__1_contigs__length_34810 LN:34810 skipping SAM header line: @SQ SN:PGA_scaffold69830__1_contigs__length_24232 LN:24232 skipping SAM header line: @SQ SN:PGA_scaffold69831__1_contigs__length_18481 LN:18481 skipping SAM header line: @SQ SN:PGA_scaffold69835__1_contigs__length_10896 LN:10896 skipping SAM header line: @SQ SN:PGA_scaffold69838__1_contigs__length_17950 LN:17950 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69910__1_contigs__length_13059 LN:13059 skipping SAM header line: @SQ SN:PGA_scaffold69912__1_contigs__length_19133 LN:19133 skipping SAM header line: @SQ SN:PGA_scaffold69919__1_contigs__length_20023 LN:20023 skipping SAM header line: @SQ SN:PGA_scaffold69922__1_contigs__length_19061 LN:19061 skipping SAM header line: @SQ SN:PGA_scaffold69924__1_contigs__length_44446 LN:44446 skipping SAM header line: @SQ SN:PGA_scaffold69928__1_contigs__length_10623 LN:10623 skipping SAM header line: @SQ SN:PGA_scaffold69929__1_contigs__length_17877 LN:17877 skipping SAM header line: @SQ SN:PGA_scaffold69930__1_contigs__length_16010 LN:16010 skipping SAM header line: @SQ SN:PGA_scaffold69932__1_contigs__length_11910 LN:11910 skipping SAM header line: @SQ SN:PGA_scaffold69935__1_contigs__length_32162 LN:32162 skipping SAM header line: @SQ SN:PGA_scaffold69937__1_contigs__length_17078 LN:17078 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70532__1_contigs__length_10801 LN:10801 skipping SAM header line: @SQ SN:PGA_scaffold70533__1_contigs__length_26547 LN:26547 skipping SAM header line: @SQ SN:PGA_scaffold70534__1_contigs__length_18255 LN:18255 skipping SAM header line: @SQ SN:PGA_scaffold70535__1_contigs__length_26427 LN:26427 skipping SAM header line: @SQ SN:PGA_scaffold70541__1_contigs__length_14321 LN:14321 skipping SAM header line: @SQ SN:PGA_scaffold70543__1_contigs__length_23174 LN:23174 skipping SAM header line: @SQ SN:PGA_scaffold70546__1_contigs__length_14031 LN:14031 skipping SAM header line: @SQ SN:PGA_scaffold70549__1_contigs__length_17268 LN:17268 skipping SAM header line: @SQ SN:PGA_scaffold70550__1_contigs__length_11747 LN:11747 skipping SAM header line: @SQ SN:PGA_scaffold70553__1_contigs__length_17810 LN:17810 skipping SAM header line: @SQ SN:PGA_scaffold70554__1_contigs__length_16333 LN:16333 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70597__1_contigs__length_32895 LN:32895 skipping SAM header line: @SQ SN:PGA_scaffold70601__1_contigs__length_11910 LN:11910 skipping SAM header line: @SQ SN:PGA_scaffold70603__1_contigs__length_11417 LN:11417 skipping SAM header line: @SQ SN:PGA_scaffold70605__1_contigs__length_25355 LN:25355 skipping SAM header line: @SQ SN:PGA_scaffold70612__1_contigs__length_11139 LN:11139 skipping SAM header line: @SQ SN:PGA_scaffold70614__1_contigs__length_13905 LN:13905 skipping SAM header line: @SQ SN:PGA_scaffold70621__1_contigs__length_11716 LN:11716 skipping SAM header line: @SQ SN:PGA_scaffold70628__1_contigs__length_97563 LN:97563 skipping SAM header line: @SQ SN:PGA_scaffold70629__1_contigs__length_23304 LN:23304 skipping SAM header line: @SQ SN:PGA_scaffold70631__1_contigs__length_11559 LN:11559 skipping SAM header line: @SQ SN:PGA_scaffold70637__1_contigs__length_38808 LN:38808 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71224__1_contigs__length_17631 LN:17631 skipping SAM header line: @SQ SN:PGA_scaffold71232__1_contigs__length_34336 LN:34336 skipping SAM header line: @SQ SN:PGA_scaffold71233__1_contigs__length_13104 LN:13104 skipping SAM header line: @SQ SN:PGA_scaffold71242__1_contigs__length_41800 LN:41800 skipping SAM header line: @SQ SN:PGA_scaffold71250__1_contigs__length_10262 LN:10262 skipping SAM header line: @SQ SN:PGA_scaffold71254__1_contigs__length_14505 LN:14505 skipping SAM header line: @SQ SN:PGA_scaffold71259__1_contigs__length_21342 LN:21342 skipping SAM header line: @SQ SN:PGA_scaffold71267__1_contigs__length_28487 LN:28487 skipping SAM header line: @SQ SN:PGA_scaffold71269__1_contigs__length_10506 LN:10506 skipping SAM header line: @SQ SN:PGA_scaffold71274__1_contigs__length_40536 LN:40536 skipping SAM header line: @SQ SN:PGA_scaffold71277__1_contigs__length_12658 LN:12658 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71319__1_contigs__length_16956 LN:16956 skipping SAM header line: @SQ SN:PGA_scaffold71321__1_contigs__length_24320 LN:24320 skipping SAM header line: @SQ SN:PGA_scaffold71329__1_contigs__length_10043 LN:10043 skipping SAM header line: @SQ SN:PGA_scaffold71330__1_contigs__length_14114 LN:14114 skipping SAM header line: @SQ SN:PGA_scaffold71339__1_contigs__length_31076 LN:31076 skipping SAM header line: @SQ SN:PGA_scaffold71341__1_contigs__length_20560 LN:20560 skipping SAM header line: @SQ SN:PGA_scaffold71346__1_contigs__length_42813 LN:42813 skipping SAM header line: @SQ SN:PGA_scaffold71347__1_contigs__length_19551 LN:19551 skipping SAM header line: @SQ SN:PGA_scaffold71351__1_contigs__length_13906 LN:13906 skipping SAM header line: @SQ SN:PGA_scaffold71352__1_contigs__length_24380 LN:24380 skipping SAM header line: @SQ SN:PGA_scaffold71357__1_contigs__length_16993 LN:16993 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71422__1_contigs__length_21375 LN:21375 skipping SAM header line: @SQ SN:PGA_scaffold71424__1_contigs__length_10310 LN:10310 skipping SAM header line: @SQ SN:PGA_scaffold71428__1_contigs__length_15675 LN:15675 skipping SAM header line: @SQ SN:PGA_scaffold71429__1_contigs__length_10100 LN:10100 skipping SAM header line: @SQ SN:PGA_scaffold71439__1_contigs__length_17437 LN:17437 skipping SAM header line: @SQ SN:PGA_scaffold71443__1_contigs__length_10497 LN:10497 skipping SAM header line: @SQ SN:PGA_scaffold71444__1_contigs__length_12169 LN:12169 skipping SAM header line: @SQ SN:PGA_scaffold71453__1_contigs__length_16930 LN:16930 skipping SAM header line: @SQ SN:PGA_scaffold71455__1_contigs__length_57134 LN:57134 skipping SAM header line: @SQ SN:PGA_scaffold71456__1_contigs__length_21591 LN:21591 skipping SAM header line: @SQ SN:PGA_scaffold71463__1_contigs__length_12793 LN:12793 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71515__1_contigs__length_12184 LN:12184 skipping SAM header line: @SQ SN:PGA_scaffold71519__1_contigs__length_17257 LN:17257 skipping SAM header line: @SQ SN:PGA_scaffold71520__1_contigs__length_33829 LN:33829 skipping SAM header line: @SQ SN:PGA_scaffold71526__1_contigs__length_11944 LN:11944 skipping SAM header line: @SQ SN:PGA_scaffold71527__1_contigs__length_11619 LN:11619 skipping SAM header line: @SQ SN:PGA_scaffold71528__1_contigs__length_39316 LN:39316 skipping SAM header line: @SQ SN:PGA_scaffold71531__1_contigs__length_14810 LN:14810 skipping SAM header line: @SQ SN:PGA_scaffold71532__1_contigs__length_14594 LN:14594 skipping SAM header line: @SQ SN:PGA_scaffold71536__1_contigs__length_20871 LN:20871 skipping SAM header line: @SQ SN:PGA_scaffold71542__1_contigs__length_26523 LN:26523 skipping SAM header line: @SQ SN:PGA_scaffold71545__1_contigs__length_25677 LN:25677 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71591__1_contigs__length_21903 LN:21903 skipping SAM header line: @SQ SN:PGA_scaffold71592__1_contigs__length_23259 LN:23259 skipping SAM header line: @SQ SN:PGA_scaffold71600__1_contigs__length_29560 LN:29560 skipping SAM header line: @SQ SN:PGA_scaffold71601__1_contigs__length_14244 LN:14244 skipping SAM header line: @SQ SN:PGA_scaffold71603__1_contigs__length_20365 LN:20365 skipping SAM header line: @SQ SN:PGA_scaffold71605__1_contigs__length_16431 LN:16431 skipping SAM header line: @SQ SN:PGA_scaffold71607__1_contigs__length_11218 LN:11218 skipping SAM header line: @SQ SN:PGA_scaffold71609__1_contigs__length_13975 LN:13975 skipping SAM header line: @SQ SN:PGA_scaffold71615__1_contigs__length_27719 LN:27719 skipping SAM header line: @SQ SN:PGA_scaffold71617__1_contigs__length_12858 LN:12858 skipping SAM header line: @SQ SN:PGA_scaffold71619__1_contigs__length_10126 LN:10126 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72066__1_contigs__length_26791 LN:26791 skipping SAM header line: @SQ SN:PGA_scaffold72068__1_contigs__length_34189 LN:34189 skipping SAM header line: @SQ SN:PGA_scaffold72069__1_contigs__length_33571 LN:33571 skipping SAM header line: @SQ SN:PGA_scaffold72071__1_contigs__length_21947 LN:21947 skipping SAM header line: @SQ SN:PGA_scaffold72073__1_contigs__length_17665 LN:17665 skipping SAM header line: @SQ SN:PGA_scaffold72080__1_contigs__length_14524 LN:14524 skipping SAM header line: @SQ SN:PGA_scaffold72089__1_contigs__length_18781 LN:18781 skipping SAM header line: @SQ SN:PGA_scaffold72098__1_contigs__length_32300 LN:32300 skipping SAM header line: @SQ SN:PGA_scaffold72102__1_contigs__length_48320 LN:48320 skipping SAM header line: @SQ SN:PGA_scaffold72105__1_contigs__length_15735 LN:15735 skipping SAM header line: @SQ SN:PGA_scaffold72110__1_contigs__length_29824 LN:29824 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72159__1_contigs__length_13324 LN:13324 skipping SAM header line: @SQ SN:PGA_scaffold72160__1_contigs__length_14793 LN:14793 skipping SAM header line: @SQ SN:PGA_scaffold72163__1_contigs__length_14690 LN:14690 skipping SAM header line: @SQ SN:PGA_scaffold72179__1_contigs__length_28764 LN:28764 skipping SAM header line: @SQ SN:PGA_scaffold72182__1_contigs__length_22282 LN:22282 skipping SAM header line: @SQ SN:PGA_scaffold72184__1_contigs__length_12911 LN:12911 skipping SAM header line: @SQ SN:PGA_scaffold72185__1_contigs__length_19085 LN:19085 skipping SAM header line: @SQ SN:PGA_scaffold72190__1_contigs__length_16709 LN:16709 skipping SAM header line: @SQ SN:PGA_scaffold72191__1_contigs__length_12395 LN:12395 skipping SAM header line: @SQ SN:PGA_scaffold72192__1_contigs__length_36706 LN:36706 skipping SAM header line: @SQ SN:PGA_scaffold72203__1_contigs__length_32495 LN:32495 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72252__1_contigs__length_37979 LN:37979 skipping SAM header line: @SQ SN:PGA_scaffold72262__1_contigs__length_18008 LN:18008 skipping SAM header line: @SQ SN:PGA_scaffold72264__1_contigs__length_14375 LN:14375 skipping SAM header line: @SQ SN:PGA_scaffold72281__1_contigs__length_10963 LN:10963 skipping SAM header line: @SQ SN:PGA_scaffold72282__1_contigs__length_53999 LN:53999 skipping SAM header line: @SQ SN:PGA_scaffold72288__1_contigs__length_10035 LN:10035 skipping SAM header line: @SQ SN:PGA_scaffold72292__1_contigs__length_23034 LN:23034 skipping SAM header line: @SQ SN:PGA_scaffold72295__1_contigs__length_11368 LN:11368 skipping SAM header line: @SQ SN:PGA_scaffold72300__1_contigs__length_18906 LN:18906 skipping SAM header line: @SQ SN:PGA_scaffold72301__1_contigs__length_15846 LN:15846 skipping SAM header line: @SQ SN:PGA_scaffold72305__1_contigs__length_11996 LN:11996 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72935__1_contigs__length_13122 LN:13122 skipping SAM header line: @SQ SN:PGA_scaffold72939__1_contigs__length_18626 LN:18626 skipping SAM header line: @SQ SN:PGA_scaffold72941__1_contigs__length_29716 LN:29716 skipping SAM header line: @SQ SN:PGA_scaffold72950__1_contigs__length_12540 LN:12540 skipping SAM header line: @SQ SN:PGA_scaffold72951__1_contigs__length_12704 LN:12704 skipping SAM header line: @SQ SN:PGA_scaffold72955__1_contigs__length_22998 LN:22998 skipping SAM header line: @SQ SN:PGA_scaffold72956__1_contigs__length_10117 LN:10117 skipping SAM header line: @SQ SN:PGA_scaffold72957__1_contigs__length_19615 LN:19615 skipping SAM header line: @SQ SN:PGA_scaffold72961__1_contigs__length_10449 LN:10449 skipping SAM header line: @SQ SN:PGA_scaffold72971__1_contigs__length_35934 LN:35934 skipping SAM header line: @SQ SN:PGA_scaffold72983__1_contigs__length_11856 LN:11856 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold77837__1_contigs__length_10601 LN:10601 skipping SAM header line: @SQ SN:PGA_scaffold77910__1_contigs__length_24661 LN:24661 skipping SAM header line: @SQ SN:PGA_scaffold77911__1_contigs__length_24672 LN:24672 skipping SAM header line: @SQ SN:PGA_scaffold77912__1_contigs__length_24672 LN:24672 skipping SAM header line: @SQ SN:PGA_scaffold77913__1_contigs__length_24661 LN:24661 skipping SAM header line: @SQ SN:PGA_scaffold78100__1_contigs__length_10380 LN:10380 skipping SAM header line: @SQ SN:PGA_scaffold78101__1_contigs__length_10380 LN:10380 skipping SAM header line: @SQ SN:PGA_scaffold78102__1_contigs__length_13875 LN:13875 skipping SAM header line: @SQ SN:PGA_scaffold78105__1_contigs__length_13875 LN:13875 skipping SAM header line: @SQ SN:PGA_scaffold78182__1_contigs__length_23159 LN:23159 skipping SAM header line: @SQ SN:PGA_scaffold78183__1_contigs__length_23159 LN:23159 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold78672__1_contigs__length_16523 LN:16523 skipping SAM header line: @SQ SN:PGA_scaffold78673__1_contigs__length_16523 LN:16523 skipping SAM header line: @SQ SN:PGA_scaffold78674__1_contigs__length_17410 LN:17410 skipping SAM header line: @SQ SN:PGA_scaffold78675__1_contigs__length_17410 LN:17410 skipping SAM header line: @SQ SN:PGA_scaffold78676__1_contigs__length_14646 LN:14646 skipping SAM header line: @SQ SN:PGA_scaffold78677__1_contigs__length_14646 LN:14646 skipping SAM header line: @SQ SN:PGA_scaffold78678__1_contigs__length_16417 LN:16417 skipping SAM header line: @SQ SN:PGA_scaffold78679__1_contigs__length_16408 LN:16408 skipping SAM header line: @SQ SN:PGA_scaffold78680__1_contigs__length_16417 LN:16417 skipping SAM header line: @SQ SN:PGA_scaffold78681__1_contigs__length_16408 LN:16408 skipping SAM header line: @SQ SN:PGA_scaffold78682__1_contigs__length_12627 LN:12627 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold84135__1_contigs__length_23648 LN:23648 skipping SAM header line: @SQ SN:PGA_scaffold84458__1_contigs__length_10934 LN:10934 skipping SAM header line: @SQ SN:PGA_scaffold84459__1_contigs__length_10934 LN:10934 skipping SAM header line: @SQ SN:PGA_scaffold84538__1_contigs__length_11062 LN:11062 skipping SAM header line: @SQ SN:PGA_scaffold84539__1_contigs__length_16065 LN:16065 skipping SAM header line: @SQ SN:PGA_scaffold84540__1_contigs__length_11062 LN:11062 skipping SAM header line: @SQ SN:PGA_scaffold84541__1_contigs__length_16065 LN:16065 skipping SAM header line: @SQ SN:PGA_scaffold84566__1_contigs__length_12424 LN:12424 skipping SAM header line: @SQ SN:PGA_scaffold84567__1_contigs__length_12424 LN:12424 skipping SAM header line: @SQ SN:PGA_scaffold84570__1_contigs__length_34138 LN:34138 skipping SAM header line: @SQ SN:PGA_scaffold84571__1_contigs__length_34138 LN:34138 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold84919__1_contigs__length_19781 LN:19781 skipping SAM header line: @SQ SN:PGA_scaffold84920__1_contigs__length_19781 LN:19781 skipping SAM header line: @SQ SN:PGA_scaffold85023__1_contigs__length_11062 LN:11062 skipping SAM header line: @SQ SN:PGA_scaffold85024__1_contigs__length_16065 LN:16065 skipping SAM header line: @SQ SN:PGA_scaffold85025__1_contigs__length_11062 LN:11062 skipping SAM header line: @SQ SN:PGA_scaffold85026__1_contigs__length_16065 LN:16065 skipping SAM header line: @SQ SN:PGA_scaffold85097__1_contigs__length_14113 LN:14113 skipping SAM header line: @SQ SN:PGA_scaffold85098__1_contigs__length_14113 LN:14113 skipping SAM header line: @SQ SN:PGA_scaffold85258__1_contigs__length_10703 LN:10703 skipping SAM header line: @SQ SN:PGA_scaffold85259__1_contigs__length_10863 LN:10863 skipping SAM header line: @SQ SN:PGA_scaffold85265__1_contigs__length_10703 LN:10703 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold85340__1_contigs__length_13570 LN:13570 skipping SAM header line: @SQ SN:PGA_scaffold85453__1_contigs__length_10649 LN:10649 skipping SAM header line: @SQ SN:PGA_scaffold85456__1_contigs__length_10649 LN:10649 skipping SAM header line: @SQ SN:PGA_scaffold85477__1_contigs__length_10649 LN:10649 skipping SAM header line: @SQ SN:PGA_scaffold85480__1_contigs__length_10649 LN:10649 skipping SAM header line: @SQ SN:PGA_scaffold85593__1_contigs__length_15462 LN:15462 skipping SAM header line: @SQ SN:PGA_scaffold85594__1_contigs__length_15462 LN:15462 skipping SAM header line: @SQ SN:PGA_scaffold85595__1_contigs__length_10408 LN:10408 skipping SAM header line: @SQ SN:PGA_scaffold85598__1_contigs__length_10408 LN:10408 skipping SAM header line: @SQ SN:PGA_scaffold85703__1_contigs__length_10408 LN:10408 skipping SAM header line: @SQ SN:PGA_scaffold85704__1_contigs__length_10408 LN:10408 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold91241__1_contigs__length_13761 LN:13761 skipping SAM header line: @SQ SN:PGA_scaffold91245__1_contigs__length_11617 LN:11617 skipping SAM header line: @SQ SN:PGA_scaffold91246__1_contigs__length_13761 LN:13761 skipping SAM header line: @SQ SN:PGA_scaffold91250__1_contigs__length_11617 LN:11617 skipping SAM header line: @SQ SN:PGA_scaffold91286__1_contigs__length_14604 LN:14604 skipping SAM header line: @SQ SN:PGA_scaffold91287__1_contigs__length_14758 LN:14758 skipping SAM header line: @SQ SN:PGA_scaffold91290__1_contigs__length_14604 LN:14604 skipping SAM header line: @SQ SN:PGA_scaffold91291__1_contigs__length_14758 LN:14758 skipping SAM header line: @SQ SN:PGA_scaffold91313__1_contigs__length_10311 LN:10311 skipping SAM header line: @SQ SN:PGA_scaffold91315__1_contigs__length_10311 LN:10311 skipping SAM header line: @SQ SN:PGA_scaffold91347__1_contigs__length_12515 LN:12515 skipping SAM header line: @SQ 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SN:PGA_scaffold313647__2_contigs__length_5689983 LN:5689983 skipping SAM header line: @SQ SN:PGA_scaffold313648__2_contigs__length_3786466 LN:3786466 skipping SAM header line: @SQ SN:PGA_scaffold313649__2_contigs__length_2716785 LN:2716785 skipping SAM header line: @PG ID:Bismark VN:v0.19.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64 --samtools_path /gscratch/srlab/programs/samtools-1.9 --score_min L,0,-1.2 -I 60 -p 28 --genome /gscratch/srlab/strigg/data/Pgenr/Pgenr_070_10K/ -1 /gscratch/srlab/strigg/data/Pgenr/FASTQS/2019_broodstock_amb_v_lowpH/Tank3-15-16_R1_001.fastq.gz -2 /gscratch/srlab/strigg/data/Pgenr/FASTQS/2019_broodstock_amb_v_lowpH/Tank3-15-16_R2_001.fastq.gz -o /gscratch/srlab/strigg/analyses/20190415_10K" Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed 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28000000 Processed lines: 28500000 Processed lines: 28500000 Processed lines: 28500000 Processed lines: 28500000 Processed lines: 28000000 Processed lines: 30000000 Processed lines: 28000000 Processed lines: 28000000 Processed lines: 28500000 Finished processing child process. Exiting.. 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Exiting.. Processed lines: 29500000 Processed lines: 29000000 Processed lines: 29000000 Processed lines: 30000000 Processed lines: 29000000 Processed lines: 29500000 Processed lines: 30000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 29500000 Processed lines: 29500000 Processed lines: 30000000 Finished processing child process. Exiting.. Processed lines: 30000000 Processed lines: 29500000 Processed lines: 30000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 30000000 Finished processing child process. Exiting.. Processed lines: 29500000 Processed lines: 29500000 Finished processing child process. Exiting.. Processed lines: 30000000 Processed lines: 29500000 Finished processing child process. Exiting.. Processed lines: 30000000 Processed lines: 29500000 Finished processing child process. Exiting.. Processed lines: 29500000 Processed lines: 29500000 Processed lines: 29500000 Processed lines: 29500000 Finished processing child process. Exiting.. Processed lines: 30000000 Processed lines: 29500000 Processed lines: 29500000 Processed lines: 30000000 Processed lines: 29500000 Processed lines: 30000000 Processed lines: 30000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 30000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 30000000 Processed lines: 30000000 Processed lines: 30000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 30000000 Processed lines: 30000000 Processed lines: 30000000 Processed lines: 30000000 Processed lines: 30000000 Finished processing child process. Exiting.. Processed lines: 30000000 Processed lines: 30000000 Processed lines: 30000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Merging individual splitting reports into overall report: '/gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: Processed 30112853 lines in total Total number of methylation call strings processed: 60225706 Final Cytosine Methylation Report ================================= Total number of C's analysed: 1140211631 Total methylated C's in CpG context: 26570633 Total methylated C's in CHG context: 7014866 Total methylated C's in CHH context: 28533548 Total C to T conversions in CpG context: 108973925 Total C to T conversions in CHG context: 196755646 Total C to T conversions in CHH context: 772363013 C methylated in CpG context: 19.6% C methylated in CHG context: 3.4% C methylated in CHH context: 3.6% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 150 Maximum read length of Read 2: 150 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 150 Maximum read length of Read 2: 150 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OT_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CpG_CTOT_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CpG_CTOB_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OB_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OT_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CHG_CTOT_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CHG_CTOB_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OB_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OT_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CHH_CTOT_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CHH_CTOB_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OB_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OT_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OB_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OT_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OB_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OT_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OB_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >/gscratch/srlab/strigg/analyses/20190415_10K/< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 2G Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: Writing bedGraph to file: Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bismark.cov.gz Changed directory to /gscratch/srlab/strigg/analyses/20190415_10K/ The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Merging all input files and sorting everything in memory instead of writing out individual chromosome files... Writing all merged methylation calls to temp file Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz.methylation_calls.merged Finished writing methylation calls from CpG_OT_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt to merged temp file Finished writing methylation calls from CpG_OB_Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.txt to merged temp file Sorting input file Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz.methylation_calls.merged by positions (using -S of 2G) Successfully deleted the temporary input file Tank3-15-16_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz.methylation_calls.merged Finished BedGraph conversion ... Checking file >>/gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam<< for signs of file truncation... ...passed! Writing result file containing methylation information for C in CpG context from the original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OT_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CpG context from the complementary to original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CpG_CTOT_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CpG context from the complementary to original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CpG_CTOB_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CpG context from the original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OB_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHG context from the original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OT_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHG context from the complementary to original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHG_CTOT_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHG context from the complementary to original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHG_CTOB_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHG context from the original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OB_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHH context from the original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OT_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHH context from the complementary to original top strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHH_CTOT_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHH context from the complementary to original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHH_CTOB_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt Writing result file containing methylation information for C in CHH context from the original bottom strand to /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OB_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Now reading in Bismark result file /gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bam Warning: unable to close filehandle IN properly. skipping SAM header line: @HD VN:1.0 SO:unsorted skipping SAM header line: @SQ SN:PGA_scaffold1__77_contigs__length_89643857 LN:89643857 skipping SAM header line: @SQ SN:PGA_scaffold2__36_contigs__length_69596280 LN:69596280 skipping SAM header line: @SQ SN:PGA_scaffold3__111_contigs__length_57743597 LN:57743597 skipping SAM header line: @SQ SN:PGA_scaffold4__129_contigs__length_65288255 LN:65288255 skipping SAM header line: @SQ SN:PGA_scaffold5__109_contigs__length_67248332 LN:67248332 skipping SAM header line: @SQ SN:PGA_scaffold6__104_contigs__length_61759565 LN:61759565 skipping SAM header line: @SQ SN:PGA_scaffold7__69_contigs__length_43120122 LN:43120122 skipping 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SAM header line: @SQ SN:PGA_scaffold13367__1_contigs__length_15359 LN:15359 skipping SAM header line: @SQ SN:PGA_scaffold13370__1_contigs__length_13193 LN:13193 skipping SAM header line: @SQ SN:PGA_scaffold13378__1_contigs__length_16417 LN:16417 skipping SAM header line: @SQ SN:PGA_scaffold13412__1_contigs__length_11325 LN:11325 skipping SAM header line: @SQ SN:PGA_scaffold13425__1_contigs__length_10248 LN:10248 skipping SAM header line: @SQ SN:PGA_scaffold13431__1_contigs__length_19035 LN:19035 skipping SAM header line: @SQ SN:PGA_scaffold13469__1_contigs__length_10308 LN:10308 skipping SAM header line: @SQ SN:PGA_scaffold13532__1_contigs__length_10730 LN:10730 skipping SAM header line: @SQ SN:PGA_scaffold13558__1_contigs__length_11671 LN:11671 skipping SAM header line: @SQ SN:PGA_scaffold13645__1_contigs__length_10244 LN:10244 skipping SAM header line: @SQ SN:PGA_scaffold13688__1_contigs__length_11119 LN:11119 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold20671__1_contigs__length_11416 LN:11416 skipping SAM header line: @SQ SN:PGA_scaffold20679__1_contigs__length_10637 LN:10637 skipping SAM header line: @SQ SN:PGA_scaffold20693__1_contigs__length_14136 LN:14136 skipping SAM header line: @SQ SN:PGA_scaffold20697__1_contigs__length_19407 LN:19407 skipping SAM header line: @SQ SN:PGA_scaffold20699__1_contigs__length_17598 LN:17598 skipping SAM header line: @SQ SN:PGA_scaffold20711__1_contigs__length_17336 LN:17336 skipping SAM header line: @SQ SN:PGA_scaffold20736__1_contigs__length_12741 LN:12741 skipping SAM header line: @SQ SN:PGA_scaffold20757__1_contigs__length_11844 LN:11844 skipping SAM header line: @SQ SN:PGA_scaffold20779__1_contigs__length_20010 LN:20010 skipping SAM header line: @SQ SN:PGA_scaffold20791__1_contigs__length_12581 LN:12581 skipping SAM header line: @SQ SN:PGA_scaffold20816__1_contigs__length_13800 LN:13800 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold21098__1_contigs__length_14229 LN:14229 skipping SAM header line: @SQ SN:PGA_scaffold21145__1_contigs__length_11689 LN:11689 skipping SAM header line: @SQ SN:PGA_scaffold21155__1_contigs__length_28037 LN:28037 skipping SAM header line: @SQ SN:PGA_scaffold21161__1_contigs__length_10074 LN:10074 skipping SAM header line: @SQ SN:PGA_scaffold21180__1_contigs__length_12108 LN:12108 skipping SAM header line: @SQ SN:PGA_scaffold21190__1_contigs__length_11535 LN:11535 skipping SAM header line: @SQ SN:PGA_scaffold21191__1_contigs__length_15836 LN:15836 skipping SAM header line: @SQ SN:PGA_scaffold21210__1_contigs__length_13970 LN:13970 skipping SAM header line: @SQ SN:PGA_scaffold21221__1_contigs__length_13550 LN:13550 skipping SAM header line: @SQ SN:PGA_scaffold21270__1_contigs__length_14329 LN:14329 skipping SAM header line: @SQ SN:PGA_scaffold21275__1_contigs__length_12895 LN:12895 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold31796__1_contigs__length_14086 LN:14086 skipping SAM header line: @SQ SN:PGA_scaffold31803__1_contigs__length_11656 LN:11656 skipping SAM header line: @SQ SN:PGA_scaffold31804__1_contigs__length_13872 LN:13872 skipping SAM header line: @SQ SN:PGA_scaffold31807__1_contigs__length_20368 LN:20368 skipping SAM header line: @SQ SN:PGA_scaffold31809__1_contigs__length_12997 LN:12997 skipping SAM header line: @SQ SN:PGA_scaffold31810__1_contigs__length_25011 LN:25011 skipping SAM header line: @SQ SN:PGA_scaffold31811__1_contigs__length_13567 LN:13567 skipping SAM header line: @SQ SN:PGA_scaffold31812__1_contigs__length_23207 LN:23207 skipping SAM header line: @SQ SN:PGA_scaffold31815__1_contigs__length_17241 LN:17241 skipping SAM header line: @SQ SN:PGA_scaffold31816__1_contigs__length_11090 LN:11090 skipping SAM header line: @SQ SN:PGA_scaffold31817__1_contigs__length_19400 LN:19400 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold32027__1_contigs__length_11657 LN:11657 skipping SAM header line: @SQ SN:PGA_scaffold32033__1_contigs__length_10177 LN:10177 skipping SAM header line: @SQ SN:PGA_scaffold32037__1_contigs__length_12059 LN:12059 skipping SAM header line: @SQ SN:PGA_scaffold32038__1_contigs__length_10627 LN:10627 skipping SAM header line: @SQ SN:PGA_scaffold32039__1_contigs__length_11937 LN:11937 skipping SAM header line: @SQ SN:PGA_scaffold32040__1_contigs__length_25532 LN:25532 skipping SAM header line: @SQ SN:PGA_scaffold32042__1_contigs__length_24927 LN:24927 skipping SAM header line: @SQ SN:PGA_scaffold32043__1_contigs__length_17381 LN:17381 skipping SAM header line: @SQ SN:PGA_scaffold32044__1_contigs__length_14848 LN:14848 skipping SAM header line: @SQ SN:PGA_scaffold32046__1_contigs__length_31565 LN:31565 skipping SAM header line: @SQ SN:PGA_scaffold32048__1_contigs__length_23410 LN:23410 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold32095__1_contigs__length_16120 LN:16120 skipping SAM header line: @SQ SN:PGA_scaffold32097__1_contigs__length_20765 LN:20765 skipping SAM header line: @SQ SN:PGA_scaffold32098__1_contigs__length_10590 LN:10590 skipping SAM header line: @SQ SN:PGA_scaffold32104__1_contigs__length_16631 LN:16631 skipping SAM header line: @SQ SN:PGA_scaffold32105__1_contigs__length_12104 LN:12104 skipping SAM header line: @SQ SN:PGA_scaffold32151__1_contigs__length_16264 LN:16264 skipping SAM header line: @SQ SN:PGA_scaffold32174__1_contigs__length_11533 LN:11533 skipping SAM header line: @SQ SN:PGA_scaffold32179__1_contigs__length_12831 LN:12831 skipping SAM header line: @SQ SN:PGA_scaffold32180__1_contigs__length_11854 LN:11854 skipping SAM header line: @SQ SN:PGA_scaffold32184__1_contigs__length_11206 LN:11206 skipping SAM header line: @SQ SN:PGA_scaffold32200__1_contigs__length_20934 LN:20934 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold37015__1_contigs__length_12689 LN:12689 skipping SAM header line: @SQ SN:PGA_scaffold37016__1_contigs__length_16255 LN:16255 skipping SAM header line: @SQ SN:PGA_scaffold37025__1_contigs__length_20206 LN:20206 skipping SAM header line: @SQ SN:PGA_scaffold37035__1_contigs__length_28627 LN:28627 skipping SAM header line: @SQ SN:PGA_scaffold37208__1_contigs__length_10075 LN:10075 skipping SAM header line: @SQ SN:PGA_scaffold37310__1_contigs__length_23447 LN:23447 skipping SAM header line: @SQ SN:PGA_scaffold37328__1_contigs__length_10685 LN:10685 skipping SAM header line: @SQ SN:PGA_scaffold37557__1_contigs__length_10518 LN:10518 skipping SAM header line: @SQ SN:PGA_scaffold37565__1_contigs__length_11017 LN:11017 skipping SAM header line: @SQ SN:PGA_scaffold37572__1_contigs__length_13878 LN:13878 skipping SAM header line: @SQ SN:PGA_scaffold37574__1_contigs__length_18623 LN:18623 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold37759__1_contigs__length_13518 LN:13518 skipping SAM header line: @SQ SN:PGA_scaffold37762__1_contigs__length_12783 LN:12783 skipping SAM header line: @SQ SN:PGA_scaffold37763__1_contigs__length_19924 LN:19924 skipping SAM header line: @SQ SN:PGA_scaffold37800__1_contigs__length_26499 LN:26499 skipping SAM header line: @SQ SN:PGA_scaffold37819__1_contigs__length_12095 LN:12095 skipping SAM header line: @SQ SN:PGA_scaffold37829__1_contigs__length_16587 LN:16587 skipping SAM header line: @SQ SN:PGA_scaffold37955__1_contigs__length_10895 LN:10895 skipping SAM header line: @SQ SN:PGA_scaffold37958__1_contigs__length_14680 LN:14680 skipping SAM header line: @SQ SN:PGA_scaffold37961__1_contigs__length_10994 LN:10994 skipping SAM header line: @SQ SN:PGA_scaffold37965__1_contigs__length_13881 LN:13881 skipping SAM header line: @SQ SN:PGA_scaffold37969__1_contigs__length_16955 LN:16955 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold38021__1_contigs__length_12916 LN:12916 skipping SAM header line: @SQ SN:PGA_scaffold38022__1_contigs__length_17982 LN:17982 skipping SAM header line: @SQ SN:PGA_scaffold38042__1_contigs__length_11303 LN:11303 skipping SAM header line: @SQ SN:PGA_scaffold38072__1_contigs__length_12702 LN:12702 skipping SAM header line: @SQ SN:PGA_scaffold38085__1_contigs__length_16826 LN:16826 skipping SAM header line: @SQ SN:PGA_scaffold38114__1_contigs__length_18567 LN:18567 skipping SAM header line: @SQ SN:PGA_scaffold38121__1_contigs__length_22090 LN:22090 skipping SAM header line: @SQ SN:PGA_scaffold38122__1_contigs__length_13308 LN:13308 skipping SAM header line: @SQ SN:PGA_scaffold38128__1_contigs__length_16021 LN:16021 skipping SAM header line: @SQ SN:PGA_scaffold38134__1_contigs__length_17916 LN:17916 skipping SAM header line: @SQ SN:PGA_scaffold38138__1_contigs__length_12478 LN:12478 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold39339__1_contigs__length_12423 LN:12423 skipping SAM header line: @SQ SN:PGA_scaffold39341__1_contigs__length_10578 LN:10578 skipping SAM header line: @SQ SN:PGA_scaffold39342__1_contigs__length_14500 LN:14500 skipping SAM header line: @SQ SN:PGA_scaffold39343__1_contigs__length_12541 LN:12541 skipping SAM header line: @SQ SN:PGA_scaffold39344__1_contigs__length_23639 LN:23639 skipping SAM header line: @SQ SN:PGA_scaffold39347__1_contigs__length_20746 LN:20746 skipping SAM header line: @SQ SN:PGA_scaffold39348__1_contigs__length_10355 LN:10355 skipping SAM header line: @SQ SN:PGA_scaffold39349__1_contigs__length_30049 LN:30049 skipping SAM header line: @SQ SN:PGA_scaffold39350__1_contigs__length_17650 LN:17650 skipping SAM header line: @SQ SN:PGA_scaffold39351__1_contigs__length_10146 LN:10146 skipping SAM header line: @SQ SN:PGA_scaffold39352__1_contigs__length_11293 LN:11293 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold43229__1_contigs__length_10636 LN:10636 skipping SAM header line: @SQ SN:PGA_scaffold43235__1_contigs__length_17163 LN:17163 skipping SAM header line: @SQ SN:PGA_scaffold43270__1_contigs__length_13334 LN:13334 skipping SAM header line: @SQ SN:PGA_scaffold43305__1_contigs__length_28701 LN:28701 skipping SAM header line: @SQ SN:PGA_scaffold43313__1_contigs__length_21118 LN:21118 skipping SAM header line: @SQ SN:PGA_scaffold43317__1_contigs__length_11462 LN:11462 skipping SAM header line: @SQ SN:PGA_scaffold43322__1_contigs__length_16910 LN:16910 skipping SAM header line: @SQ SN:PGA_scaffold43349__1_contigs__length_21587 LN:21587 skipping SAM header line: @SQ SN:PGA_scaffold43350__1_contigs__length_11858 LN:11858 skipping SAM header line: @SQ SN:PGA_scaffold43351__1_contigs__length_14334 LN:14334 skipping SAM header line: @SQ SN:PGA_scaffold43362__1_contigs__length_13786 LN:13786 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold43520__1_contigs__length_19065 LN:19065 skipping SAM header line: @SQ SN:PGA_scaffold43528__1_contigs__length_13364 LN:13364 skipping SAM header line: @SQ SN:PGA_scaffold43537__1_contigs__length_16854 LN:16854 skipping SAM header line: @SQ SN:PGA_scaffold43546__1_contigs__length_12268 LN:12268 skipping SAM header line: @SQ SN:PGA_scaffold43557__1_contigs__length_11245 LN:11245 skipping SAM header line: @SQ SN:PGA_scaffold43605__1_contigs__length_16531 LN:16531 skipping SAM header line: @SQ SN:PGA_scaffold43611__1_contigs__length_18859 LN:18859 skipping SAM header line: @SQ SN:PGA_scaffold43613__1_contigs__length_11497 LN:11497 skipping SAM header line: @SQ SN:PGA_scaffold43626__1_contigs__length_17505 LN:17505 skipping SAM header line: @SQ SN:PGA_scaffold43638__1_contigs__length_11681 LN:11681 skipping SAM header line: @SQ SN:PGA_scaffold43645__1_contigs__length_10534 LN:10534 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold43702__1_contigs__length_13254 LN:13254 skipping SAM header line: @SQ SN:PGA_scaffold43704__1_contigs__length_26494 LN:26494 skipping SAM header line: @SQ SN:PGA_scaffold43705__1_contigs__length_16584 LN:16584 skipping SAM header line: @SQ SN:PGA_scaffold43717__1_contigs__length_14953 LN:14953 skipping SAM header line: @SQ SN:PGA_scaffold43718__1_contigs__length_27730 LN:27730 skipping SAM header line: @SQ SN:PGA_scaffold43719__1_contigs__length_12622 LN:12622 skipping SAM header line: @SQ SN:PGA_scaffold43721__1_contigs__length_10937 LN:10937 skipping SAM header line: @SQ SN:PGA_scaffold43723__1_contigs__length_13877 LN:13877 skipping SAM header line: @SQ SN:PGA_scaffold43730__1_contigs__length_14721 LN:14721 skipping SAM header line: @SQ SN:PGA_scaffold43731__1_contigs__length_16151 LN:16151 skipping SAM header line: @SQ SN:PGA_scaffold43732__1_contigs__length_10573 LN:10573 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold46139__1_contigs__length_39029 LN:39029 skipping SAM header line: @SQ SN:PGA_scaffold46140__1_contigs__length_14947 LN:14947 skipping SAM header line: @SQ SN:PGA_scaffold46144__1_contigs__length_30043 LN:30043 skipping SAM header line: @SQ SN:PGA_scaffold46146__1_contigs__length_16709 LN:16709 skipping SAM header line: @SQ SN:PGA_scaffold46149__1_contigs__length_17955 LN:17955 skipping SAM header line: @SQ SN:PGA_scaffold46150__1_contigs__length_17440 LN:17440 skipping SAM header line: @SQ SN:PGA_scaffold46151__1_contigs__length_14283 LN:14283 skipping SAM header line: @SQ SN:PGA_scaffold46154__1_contigs__length_14242 LN:14242 skipping SAM header line: @SQ SN:PGA_scaffold46157__1_contigs__length_21667 LN:21667 skipping SAM header line: @SQ SN:PGA_scaffold46169__1_contigs__length_22331 LN:22331 skipping SAM header line: @SQ SN:PGA_scaffold46171__1_contigs__length_21827 LN:21827 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold49165__1_contigs__length_22310 LN:22310 skipping SAM header line: @SQ SN:PGA_scaffold49167__1_contigs__length_20560 LN:20560 skipping SAM header line: @SQ SN:PGA_scaffold49174__1_contigs__length_12969 LN:12969 skipping SAM header line: @SQ SN:PGA_scaffold49175__1_contigs__length_28691 LN:28691 skipping SAM header line: @SQ SN:PGA_scaffold49186__1_contigs__length_11971 LN:11971 skipping SAM header line: @SQ SN:PGA_scaffold49191__1_contigs__length_10824 LN:10824 skipping SAM header line: @SQ SN:PGA_scaffold49194__1_contigs__length_29168 LN:29168 skipping SAM header line: @SQ SN:PGA_scaffold49200__1_contigs__length_15006 LN:15006 skipping SAM header line: @SQ SN:PGA_scaffold49209__1_contigs__length_10515 LN:10515 skipping SAM header line: @SQ SN:PGA_scaffold49210__1_contigs__length_13683 LN:13683 skipping SAM header line: @SQ SN:PGA_scaffold49211__1_contigs__length_11356 LN:11356 skipping SAM header line: @SQ SN:PGA_scaffold49221__1_contigs__length_14192 LN:14192 skipping SAM header line: @SQ SN:PGA_scaffold49224__1_contigs__length_19858 LN:19858 skipping SAM header line: @SQ SN:PGA_scaffold49226__1_contigs__length_27352 LN:27352 skipping SAM header line: @SQ SN:PGA_scaffold49229__1_contigs__length_10015 LN:10015 skipping SAM header line: @SQ SN:PGA_scaffold49232__1_contigs__length_11940 LN:11940 skipping SAM header line: @SQ SN:PGA_scaffold49234__1_contigs__length_12806 LN:12806 skipping SAM header line: @SQ SN:PGA_scaffold49236__1_contigs__length_17279 LN:17279 skipping SAM header line: @SQ SN:PGA_scaffold49239__1_contigs__length_15724 LN:15724 skipping SAM header line: @SQ SN:PGA_scaffold49240__1_contigs__length_15576 LN:15576 skipping SAM header line: @SQ SN:PGA_scaffold49253__1_contigs__length_11797 LN:11797 skipping SAM header line: @SQ SN:PGA_scaffold49255__1_contigs__length_12863 LN:12863 skipping SAM header line: @SQ SN:PGA_scaffold49256__1_contigs__length_10395 LN:10395 skipping SAM header line: @SQ SN:PGA_scaffold49257__1_contigs__length_26558 LN:26558 skipping SAM header line: @SQ SN:PGA_scaffold49259__1_contigs__length_12333 LN:12333 skipping SAM header line: @SQ SN:PGA_scaffold49266__1_contigs__length_11576 LN:11576 skipping SAM header line: @SQ SN:PGA_scaffold49268__1_contigs__length_12961 LN:12961 skipping SAM header line: @SQ SN:PGA_scaffold49269__1_contigs__length_58629 LN:58629 skipping SAM header line: @SQ SN:PGA_scaffold49272__1_contigs__length_48462 LN:48462 skipping SAM header line: @SQ SN:PGA_scaffold49286__1_contigs__length_32480 LN:32480 skipping SAM header line: @SQ SN:PGA_scaffold49289__1_contigs__length_10153 LN:10153 skipping SAM header line: @SQ SN:PGA_scaffold49291__1_contigs__length_14827 LN:14827 skipping SAM header line: @SQ SN:PGA_scaffold49292__1_contigs__length_14774 LN:14774 skipping SAM header line: @SQ SN:PGA_scaffold49294__1_contigs__length_18010 LN:18010 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold49326__1_contigs__length_14299 LN:14299 skipping SAM header line: @SQ SN:PGA_scaffold49327__1_contigs__length_31386 LN:31386 skipping SAM header line: @SQ SN:PGA_scaffold49330__1_contigs__length_23437 LN:23437 skipping SAM header line: @SQ SN:PGA_scaffold49332__1_contigs__length_16295 LN:16295 skipping SAM header line: @SQ SN:PGA_scaffold49336__1_contigs__length_27472 LN:27472 skipping SAM header line: @SQ SN:PGA_scaffold49337__1_contigs__length_44952 LN:44952 skipping SAM header line: @SQ SN:PGA_scaffold49340__1_contigs__length_11653 LN:11653 skipping SAM header line: @SQ SN:PGA_scaffold49343__1_contigs__length_14077 LN:14077 skipping SAM header line: @SQ SN:PGA_scaffold49344__1_contigs__length_12943 LN:12943 skipping SAM header line: @SQ SN:PGA_scaffold49345__1_contigs__length_12605 LN:12605 skipping SAM header line: @SQ SN:PGA_scaffold49352__1_contigs__length_23523 LN:23523 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold50839__1_contigs__length_13550 LN:13550 skipping SAM header line: @SQ SN:PGA_scaffold50855__1_contigs__length_17396 LN:17396 skipping SAM header line: @SQ SN:PGA_scaffold50857__1_contigs__length_15440 LN:15440 skipping SAM header line: @SQ SN:PGA_scaffold50862__1_contigs__length_10894 LN:10894 skipping SAM header line: @SQ SN:PGA_scaffold50881__1_contigs__length_11214 LN:11214 skipping SAM header line: @SQ SN:PGA_scaffold50884__1_contigs__length_14439 LN:14439 skipping SAM header line: @SQ SN:PGA_scaffold50887__1_contigs__length_20418 LN:20418 skipping SAM header line: @SQ SN:PGA_scaffold50893__1_contigs__length_17684 LN:17684 skipping SAM header line: @SQ SN:PGA_scaffold50899__1_contigs__length_10258 LN:10258 skipping SAM header line: @SQ SN:PGA_scaffold50903__1_contigs__length_12444 LN:12444 skipping SAM header line: @SQ SN:PGA_scaffold50910__1_contigs__length_10139 LN:10139 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold51207__1_contigs__length_11585 LN:11585 skipping SAM header line: @SQ SN:PGA_scaffold51214__1_contigs__length_11930 LN:11930 skipping SAM header line: @SQ SN:PGA_scaffold51239__1_contigs__length_28000 LN:28000 skipping SAM header line: @SQ SN:PGA_scaffold51251__1_contigs__length_17902 LN:17902 skipping SAM header line: @SQ SN:PGA_scaffold51297__1_contigs__length_15202 LN:15202 skipping SAM header line: @SQ SN:PGA_scaffold51302__1_contigs__length_11436 LN:11436 skipping SAM header line: @SQ SN:PGA_scaffold51330__1_contigs__length_11389 LN:11389 skipping SAM header line: @SQ SN:PGA_scaffold51344__1_contigs__length_17940 LN:17940 skipping SAM header line: @SQ SN:PGA_scaffold51353__1_contigs__length_12153 LN:12153 skipping SAM header line: @SQ SN:PGA_scaffold51355__1_contigs__length_10824 LN:10824 skipping SAM header line: @SQ SN:PGA_scaffold51375__1_contigs__length_10725 LN:10725 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold51527__1_contigs__length_12947 LN:12947 skipping SAM header line: @SQ SN:PGA_scaffold51529__1_contigs__length_14797 LN:14797 skipping SAM header line: @SQ SN:PGA_scaffold51536__1_contigs__length_21274 LN:21274 skipping SAM header line: @SQ SN:PGA_scaffold51544__1_contigs__length_32260 LN:32260 skipping SAM header line: @SQ SN:PGA_scaffold51545__1_contigs__length_14880 LN:14880 skipping SAM header line: @SQ SN:PGA_scaffold51551__1_contigs__length_17471 LN:17471 skipping SAM header line: @SQ SN:PGA_scaffold51553__1_contigs__length_15277 LN:15277 skipping SAM header line: @SQ SN:PGA_scaffold51555__1_contigs__length_12794 LN:12794 skipping SAM header line: @SQ SN:PGA_scaffold51557__1_contigs__length_12064 LN:12064 skipping SAM header line: @SQ SN:PGA_scaffold51573__1_contigs__length_14484 LN:14484 skipping SAM header line: @SQ SN:PGA_scaffold51609__1_contigs__length_11770 LN:11770 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold51682__1_contigs__length_11315 LN:11315 skipping SAM header line: @SQ SN:PGA_scaffold51684__1_contigs__length_32586 LN:32586 skipping SAM header line: @SQ SN:PGA_scaffold51686__1_contigs__length_16642 LN:16642 skipping SAM header line: @SQ SN:PGA_scaffold51693__1_contigs__length_14051 LN:14051 skipping SAM header line: @SQ SN:PGA_scaffold51694__1_contigs__length_13071 LN:13071 skipping SAM header line: @SQ SN:PGA_scaffold51695__1_contigs__length_11099 LN:11099 skipping SAM header line: @SQ SN:PGA_scaffold51704__1_contigs__length_13569 LN:13569 skipping SAM header line: @SQ SN:PGA_scaffold51712__1_contigs__length_22480 LN:22480 skipping SAM header line: @SQ SN:PGA_scaffold51713__1_contigs__length_14688 LN:14688 skipping SAM header line: @SQ SN:PGA_scaffold51724__1_contigs__length_13355 LN:13355 skipping SAM header line: @SQ SN:PGA_scaffold51730__1_contigs__length_17419 LN:17419 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold52478__1_contigs__length_11789 LN:11789 skipping SAM header line: @SQ SN:PGA_scaffold52541__1_contigs__length_11870 LN:11870 skipping SAM header line: @SQ SN:PGA_scaffold52549__1_contigs__length_10359 LN:10359 skipping SAM header line: @SQ SN:PGA_scaffold52575__1_contigs__length_11511 LN:11511 skipping SAM header line: @SQ SN:PGA_scaffold52641__1_contigs__length_10537 LN:10537 skipping SAM header line: @SQ SN:PGA_scaffold52688__1_contigs__length_10626 LN:10626 skipping SAM header line: @SQ SN:PGA_scaffold52695__1_contigs__length_11369 LN:11369 skipping SAM header line: @SQ SN:PGA_scaffold52716__1_contigs__length_10153 LN:10153 skipping SAM header line: @SQ SN:PGA_scaffold52724__1_contigs__length_10927 LN:10927 skipping SAM header line: @SQ SN:PGA_scaffold52749__1_contigs__length_11021 LN:11021 skipping SAM header line: @SQ SN:PGA_scaffold52752__1_contigs__length_10196 LN:10196 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold52863__1_contigs__length_10934 LN:10934 skipping SAM header line: @SQ SN:PGA_scaffold52864__1_contigs__length_13662 LN:13662 skipping SAM header line: @SQ SN:PGA_scaffold52869__1_contigs__length_35263 LN:35263 skipping SAM header line: @SQ SN:PGA_scaffold52870__1_contigs__length_19057 LN:19057 skipping SAM header line: @SQ SN:PGA_scaffold52871__1_contigs__length_11017 LN:11017 skipping SAM header line: @SQ SN:PGA_scaffold52872__1_contigs__length_34839 LN:34839 skipping SAM header line: @SQ SN:PGA_scaffold52873__1_contigs__length_19623 LN:19623 skipping SAM header line: @SQ SN:PGA_scaffold52877__1_contigs__length_10665 LN:10665 skipping SAM header line: @SQ SN:PGA_scaffold52880__1_contigs__length_17400 LN:17400 skipping SAM header line: @SQ SN:PGA_scaffold52881__1_contigs__length_25209 LN:25209 skipping SAM header line: @SQ SN:PGA_scaffold52888__1_contigs__length_16347 LN:16347 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold53770__1_contigs__length_45803 LN:45803 skipping SAM header line: @SQ SN:PGA_scaffold53771__1_contigs__length_16212 LN:16212 skipping SAM header line: @SQ SN:PGA_scaffold53772__1_contigs__length_21931 LN:21931 skipping SAM header line: @SQ SN:PGA_scaffold53773__1_contigs__length_15327 LN:15327 skipping SAM header line: @SQ SN:PGA_scaffold53774__1_contigs__length_13385 LN:13385 skipping SAM header line: @SQ SN:PGA_scaffold53777__1_contigs__length_11005 LN:11005 skipping SAM header line: @SQ SN:PGA_scaffold53792__1_contigs__length_11556 LN:11556 skipping SAM header line: @SQ SN:PGA_scaffold53810__1_contigs__length_10098 LN:10098 skipping SAM header line: @SQ SN:PGA_scaffold53840__1_contigs__length_10403 LN:10403 skipping SAM header line: @SQ SN:PGA_scaffold53848__1_contigs__length_10363 LN:10363 skipping SAM header line: @SQ SN:PGA_scaffold53856__1_contigs__length_10086 LN:10086 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold53980__1_contigs__length_11386 LN:11386 skipping SAM header line: @SQ SN:PGA_scaffold53982__1_contigs__length_10193 LN:10193 skipping SAM header line: @SQ SN:PGA_scaffold53987__1_contigs__length_11322 LN:11322 skipping SAM header line: @SQ SN:PGA_scaffold53989__1_contigs__length_55742 LN:55742 skipping SAM header line: @SQ SN:PGA_scaffold53990__1_contigs__length_50335 LN:50335 skipping SAM header line: @SQ SN:PGA_scaffold53991__1_contigs__length_51016 LN:51016 skipping SAM header line: @SQ SN:PGA_scaffold53992__1_contigs__length_30819 LN:30819 skipping SAM header line: @SQ SN:PGA_scaffold53993__1_contigs__length_26828 LN:26828 skipping SAM header line: @SQ SN:PGA_scaffold53994__1_contigs__length_45288 LN:45288 skipping SAM header line: @SQ SN:PGA_scaffold53995__1_contigs__length_36326 LN:36326 skipping SAM header line: @SQ SN:PGA_scaffold53996__1_contigs__length_14183 LN:14183 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold54021__1_contigs__length_10987 LN:10987 skipping SAM header line: @SQ SN:PGA_scaffold54022__1_contigs__length_25747 LN:25747 skipping SAM header line: @SQ SN:PGA_scaffold54023__1_contigs__length_15969 LN:15969 skipping SAM header line: @SQ SN:PGA_scaffold54025__1_contigs__length_16983 LN:16983 skipping SAM header line: @SQ SN:PGA_scaffold54026__1_contigs__length_10627 LN:10627 skipping SAM header line: @SQ SN:PGA_scaffold54055__1_contigs__length_15965 LN:15965 skipping SAM header line: @SQ SN:PGA_scaffold54069__1_contigs__length_15941 LN:15941 skipping SAM header line: @SQ SN:PGA_scaffold54070__1_contigs__length_11360 LN:11360 skipping SAM header line: @SQ SN:PGA_scaffold54074__1_contigs__length_16247 LN:16247 skipping SAM header line: @SQ SN:PGA_scaffold54085__1_contigs__length_10431 LN:10431 skipping SAM header line: @SQ SN:PGA_scaffold54104__1_contigs__length_10618 LN:10618 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold55681__1_contigs__length_11504 LN:11504 skipping SAM header line: @SQ SN:PGA_scaffold55687__1_contigs__length_19196 LN:19196 skipping SAM header line: @SQ SN:PGA_scaffold55689__1_contigs__length_28897 LN:28897 skipping SAM header line: @SQ SN:PGA_scaffold55697__1_contigs__length_10718 LN:10718 skipping SAM header line: @SQ SN:PGA_scaffold55700__1_contigs__length_17384 LN:17384 skipping SAM header line: @SQ SN:PGA_scaffold55710__1_contigs__length_17064 LN:17064 skipping SAM header line: @SQ SN:PGA_scaffold55711__1_contigs__length_39787 LN:39787 skipping SAM header line: @SQ SN:PGA_scaffold55712__1_contigs__length_14233 LN:14233 skipping SAM header line: @SQ SN:PGA_scaffold55713__1_contigs__length_11171 LN:11171 skipping SAM header line: @SQ SN:PGA_scaffold55714__1_contigs__length_36372 LN:36372 skipping SAM header line: @SQ SN:PGA_scaffold55715__1_contigs__length_14986 LN:14986 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold55778__1_contigs__length_10434 LN:10434 skipping SAM header line: @SQ SN:PGA_scaffold55779__1_contigs__length_10071 LN:10071 skipping SAM header line: @SQ SN:PGA_scaffold55792__1_contigs__length_11898 LN:11898 skipping SAM header line: @SQ SN:PGA_scaffold55798__1_contigs__length_11307 LN:11307 skipping SAM header line: @SQ SN:PGA_scaffold55809__1_contigs__length_14044 LN:14044 skipping SAM header line: @SQ SN:PGA_scaffold55811__1_contigs__length_14545 LN:14545 skipping SAM header line: @SQ SN:PGA_scaffold55813__1_contigs__length_16725 LN:16725 skipping SAM header line: @SQ SN:PGA_scaffold55814__1_contigs__length_15750 LN:15750 skipping SAM header line: @SQ SN:PGA_scaffold55815__1_contigs__length_10780 LN:10780 skipping SAM header line: @SQ SN:PGA_scaffold55817__1_contigs__length_14050 LN:14050 skipping SAM header line: @SQ SN:PGA_scaffold55827__1_contigs__length_17274 LN:17274 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold55939__1_contigs__length_15504 LN:15504 skipping SAM header line: @SQ SN:PGA_scaffold55973__1_contigs__length_17533 LN:17533 skipping SAM header line: @SQ SN:PGA_scaffold55979__1_contigs__length_33616 LN:33616 skipping SAM header line: @SQ SN:PGA_scaffold55985__1_contigs__length_17195 LN:17195 skipping SAM header line: @SQ SN:PGA_scaffold55988__1_contigs__length_26602 LN:26602 skipping SAM header line: @SQ SN:PGA_scaffold56009__1_contigs__length_11223 LN:11223 skipping SAM header line: @SQ SN:PGA_scaffold56014__1_contigs__length_12441 LN:12441 skipping SAM header line: @SQ SN:PGA_scaffold56016__1_contigs__length_10736 LN:10736 skipping SAM header line: @SQ SN:PGA_scaffold56019__1_contigs__length_15008 LN:15008 skipping SAM header line: @SQ SN:PGA_scaffold56024__1_contigs__length_10541 LN:10541 skipping SAM header line: @SQ SN:PGA_scaffold56026__1_contigs__length_29839 LN:29839 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold56245__1_contigs__length_21244 LN:21244 skipping SAM header line: @SQ SN:PGA_scaffold56261__1_contigs__length_13085 LN:13085 skipping SAM header line: @SQ SN:PGA_scaffold56268__1_contigs__length_16080 LN:16080 skipping SAM header line: @SQ SN:PGA_scaffold56275__1_contigs__length_11474 LN:11474 skipping SAM header line: @SQ SN:PGA_scaffold56308__1_contigs__length_11602 LN:11602 skipping SAM header line: @SQ SN:PGA_scaffold56311__1_contigs__length_10546 LN:10546 skipping SAM header line: @SQ SN:PGA_scaffold56313__1_contigs__length_11286 LN:11286 skipping SAM header line: @SQ SN:PGA_scaffold56319__1_contigs__length_13227 LN:13227 skipping SAM header line: @SQ SN:PGA_scaffold56338__1_contigs__length_12796 LN:12796 skipping SAM header line: @SQ SN:PGA_scaffold56341__1_contigs__length_12059 LN:12059 skipping SAM header line: @SQ SN:PGA_scaffold56347__1_contigs__length_13124 LN:13124 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57086__1_contigs__length_15416 LN:15416 skipping SAM header line: @SQ SN:PGA_scaffold57091__1_contigs__length_11141 LN:11141 skipping SAM header line: @SQ SN:PGA_scaffold57097__1_contigs__length_26486 LN:26486 skipping SAM header line: @SQ SN:PGA_scaffold57101__1_contigs__length_12587 LN:12587 skipping SAM header line: @SQ SN:PGA_scaffold57103__1_contigs__length_10399 LN:10399 skipping SAM header line: @SQ SN:PGA_scaffold57106__1_contigs__length_11353 LN:11353 skipping SAM header line: @SQ SN:PGA_scaffold57108__1_contigs__length_20164 LN:20164 skipping SAM header line: @SQ SN:PGA_scaffold57125__1_contigs__length_17547 LN:17547 skipping SAM header line: @SQ SN:PGA_scaffold57133__1_contigs__length_26233 LN:26233 skipping SAM header line: @SQ SN:PGA_scaffold57139__1_contigs__length_21298 LN:21298 skipping SAM header line: @SQ SN:PGA_scaffold57144__1_contigs__length_24604 LN:24604 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold57216__1_contigs__length_15945 LN:15945 skipping SAM header line: @SQ SN:PGA_scaffold57220__1_contigs__length_13709 LN:13709 skipping SAM header line: @SQ SN:PGA_scaffold57223__1_contigs__length_11171 LN:11171 skipping SAM header line: @SQ SN:PGA_scaffold57230__1_contigs__length_11444 LN:11444 skipping SAM header line: @SQ SN:PGA_scaffold57233__1_contigs__length_23586 LN:23586 skipping SAM header line: @SQ SN:PGA_scaffold57244__1_contigs__length_12199 LN:12199 skipping SAM header line: @SQ SN:PGA_scaffold57245__1_contigs__length_14215 LN:14215 skipping SAM header line: @SQ SN:PGA_scaffold57246__1_contigs__length_10239 LN:10239 skipping SAM header line: @SQ SN:PGA_scaffold57261__1_contigs__length_16257 LN:16257 skipping SAM header line: @SQ SN:PGA_scaffold57268__1_contigs__length_12891 LN:12891 skipping SAM header line: @SQ SN:PGA_scaffold57284__1_contigs__length_13129 LN:13129 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold58260__1_contigs__length_12467 LN:12467 skipping SAM header line: @SQ SN:PGA_scaffold58261__1_contigs__length_10609 LN:10609 skipping SAM header line: @SQ SN:PGA_scaffold58264__1_contigs__length_33661 LN:33661 skipping SAM header line: @SQ SN:PGA_scaffold58265__1_contigs__length_14960 LN:14960 skipping SAM header line: @SQ SN:PGA_scaffold58266__1_contigs__length_10850 LN:10850 skipping SAM header line: @SQ SN:PGA_scaffold58270__1_contigs__length_29722 LN:29722 skipping SAM header line: @SQ SN:PGA_scaffold58275__1_contigs__length_20529 LN:20529 skipping SAM header line: @SQ SN:PGA_scaffold58283__1_contigs__length_21704 LN:21704 skipping SAM header line: @SQ SN:PGA_scaffold58284__1_contigs__length_33826 LN:33826 skipping SAM header line: @SQ SN:PGA_scaffold58290__1_contigs__length_11324 LN:11324 skipping SAM header line: @SQ SN:PGA_scaffold58294__1_contigs__length_16400 LN:16400 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold58333__1_contigs__length_13330 LN:13330 skipping SAM header line: @SQ SN:PGA_scaffold58343__1_contigs__length_19353 LN:19353 skipping SAM header line: @SQ SN:PGA_scaffold58345__1_contigs__length_21782 LN:21782 skipping SAM header line: @SQ SN:PGA_scaffold58348__1_contigs__length_12345 LN:12345 skipping SAM header line: @SQ SN:PGA_scaffold58352__1_contigs__length_14446 LN:14446 skipping SAM header line: @SQ SN:PGA_scaffold58353__1_contigs__length_13485 LN:13485 skipping SAM header line: @SQ SN:PGA_scaffold58361__1_contigs__length_52751 LN:52751 skipping SAM header line: @SQ SN:PGA_scaffold58366__1_contigs__length_37326 LN:37326 skipping SAM header line: @SQ SN:PGA_scaffold58370__1_contigs__length_11988 LN:11988 skipping SAM header line: @SQ SN:PGA_scaffold58371__1_contigs__length_12863 LN:12863 skipping SAM header line: @SQ SN:PGA_scaffold58374__1_contigs__length_15700 LN:15700 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold58405__1_contigs__length_25074 LN:25074 skipping SAM header line: @SQ SN:PGA_scaffold58406__1_contigs__length_39981 LN:39981 skipping SAM header line: @SQ SN:PGA_scaffold58408__1_contigs__length_51130 LN:51130 skipping SAM header line: @SQ SN:PGA_scaffold58409__1_contigs__length_29998 LN:29998 skipping SAM header line: @SQ SN:PGA_scaffold58411__1_contigs__length_11196 LN:11196 skipping SAM header line: @SQ SN:PGA_scaffold58413__1_contigs__length_24633 LN:24633 skipping SAM header line: @SQ SN:PGA_scaffold58414__1_contigs__length_31140 LN:31140 skipping SAM header line: @SQ SN:PGA_scaffold58420__1_contigs__length_10267 LN:10267 skipping SAM header line: @SQ SN:PGA_scaffold58423__1_contigs__length_47054 LN:47054 skipping SAM header line: @SQ SN:PGA_scaffold58431__1_contigs__length_30555 LN:30555 skipping SAM header line: @SQ SN:PGA_scaffold58437__1_contigs__length_27914 LN:27914 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold61512__1_contigs__length_19257 LN:19257 skipping SAM header line: @SQ SN:PGA_scaffold61516__1_contigs__length_14448 LN:14448 skipping SAM header line: @SQ SN:PGA_scaffold61517__1_contigs__length_18258 LN:18258 skipping SAM header line: @SQ SN:PGA_scaffold61518__1_contigs__length_14582 LN:14582 skipping SAM header line: @SQ SN:PGA_scaffold61530__1_contigs__length_13411 LN:13411 skipping SAM header line: @SQ SN:PGA_scaffold61545__1_contigs__length_11393 LN:11393 skipping SAM header line: @SQ SN:PGA_scaffold61547__1_contigs__length_13960 LN:13960 skipping SAM header line: @SQ SN:PGA_scaffold61555__1_contigs__length_16857 LN:16857 skipping SAM header line: @SQ SN:PGA_scaffold61559__1_contigs__length_13176 LN:13176 skipping SAM header line: @SQ SN:PGA_scaffold61563__1_contigs__length_12364 LN:12364 skipping SAM header line: @SQ SN:PGA_scaffold61565__1_contigs__length_12663 LN:12663 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold61593__1_contigs__length_12227 LN:12227 skipping SAM header line: @SQ SN:PGA_scaffold61597__1_contigs__length_16686 LN:16686 skipping SAM header line: @SQ SN:PGA_scaffold61599__1_contigs__length_15594 LN:15594 skipping SAM header line: @SQ SN:PGA_scaffold61600__1_contigs__length_13886 LN:13886 skipping SAM header line: @SQ SN:PGA_scaffold61601__1_contigs__length_22025 LN:22025 skipping SAM header line: @SQ SN:PGA_scaffold61603__1_contigs__length_11385 LN:11385 skipping SAM header line: @SQ SN:PGA_scaffold61613__1_contigs__length_25314 LN:25314 skipping SAM header line: @SQ SN:PGA_scaffold61614__1_contigs__length_28466 LN:28466 skipping SAM header line: @SQ SN:PGA_scaffold61615__1_contigs__length_40934 LN:40934 skipping SAM header line: @SQ SN:PGA_scaffold61616__1_contigs__length_20028 LN:20028 skipping SAM header line: @SQ SN:PGA_scaffold61618__1_contigs__length_16679 LN:16679 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64407__1_contigs__length_10817 LN:10817 skipping SAM header line: @SQ SN:PGA_scaffold64413__1_contigs__length_24489 LN:24489 skipping SAM header line: @SQ SN:PGA_scaffold64418__1_contigs__length_13923 LN:13923 skipping SAM header line: @SQ SN:PGA_scaffold64420__1_contigs__length_10191 LN:10191 skipping SAM header line: @SQ SN:PGA_scaffold64424__1_contigs__length_18909 LN:18909 skipping SAM header line: @SQ SN:PGA_scaffold64425__1_contigs__length_10870 LN:10870 skipping SAM header line: @SQ SN:PGA_scaffold64426__1_contigs__length_49077 LN:49077 skipping SAM header line: @SQ SN:PGA_scaffold64437__1_contigs__length_13251 LN:13251 skipping SAM header line: @SQ SN:PGA_scaffold64445__1_contigs__length_19583 LN:19583 skipping SAM header line: @SQ SN:PGA_scaffold64446__1_contigs__length_12816 LN:12816 skipping SAM header line: @SQ SN:PGA_scaffold64451__1_contigs__length_18104 LN:18104 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64471__1_contigs__length_34271 LN:34271 skipping SAM header line: @SQ SN:PGA_scaffold64472__1_contigs__length_17024 LN:17024 skipping SAM header line: @SQ SN:PGA_scaffold64473__1_contigs__length_33437 LN:33437 skipping SAM header line: @SQ SN:PGA_scaffold64474__1_contigs__length_10658 LN:10658 skipping SAM header line: @SQ SN:PGA_scaffold64475__1_contigs__length_12937 LN:12937 skipping SAM header line: @SQ SN:PGA_scaffold64482__1_contigs__length_24406 LN:24406 skipping SAM header line: @SQ SN:PGA_scaffold64491__1_contigs__length_10063 LN:10063 skipping SAM header line: @SQ SN:PGA_scaffold64496__1_contigs__length_12925 LN:12925 skipping SAM header line: @SQ SN:PGA_scaffold64511__1_contigs__length_10348 LN:10348 skipping SAM header line: @SQ SN:PGA_scaffold64518__1_contigs__length_11803 LN:11803 skipping SAM header line: @SQ SN:PGA_scaffold64529__1_contigs__length_33564 LN:33564 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold64601__1_contigs__length_25922 LN:25922 skipping SAM header line: @SQ SN:PGA_scaffold64602__1_contigs__length_28737 LN:28737 skipping SAM header line: @SQ SN:PGA_scaffold64604__1_contigs__length_30801 LN:30801 skipping SAM header line: @SQ SN:PGA_scaffold64605__1_contigs__length_26360 LN:26360 skipping SAM header line: @SQ SN:PGA_scaffold64606__1_contigs__length_35651 LN:35651 skipping SAM header line: @SQ SN:PGA_scaffold64607__1_contigs__length_70013 LN:70013 skipping SAM header line: @SQ SN:PGA_scaffold64608__1_contigs__length_49602 LN:49602 skipping SAM header line: @SQ SN:PGA_scaffold64609__1_contigs__length_21660 LN:21660 skipping SAM header line: @SQ SN:PGA_scaffold64613__1_contigs__length_42419 LN:42419 skipping SAM header line: @SQ SN:PGA_scaffold64614__1_contigs__length_26585 LN:26585 skipping SAM header line: @SQ SN:PGA_scaffold64615__1_contigs__length_27488 LN:27488 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold65322__1_contigs__length_27853 LN:27853 skipping SAM header line: @SQ SN:PGA_scaffold65325__1_contigs__length_12743 LN:12743 skipping SAM header line: @SQ SN:PGA_scaffold65326__1_contigs__length_16568 LN:16568 skipping SAM header line: @SQ SN:PGA_scaffold65328__1_contigs__length_13003 LN:13003 skipping SAM header line: @SQ SN:PGA_scaffold65329__1_contigs__length_30096 LN:30096 skipping SAM header line: @SQ SN:PGA_scaffold65331__1_contigs__length_16109 LN:16109 skipping SAM header line: @SQ SN:PGA_scaffold65332__1_contigs__length_26100 LN:26100 skipping SAM header line: @SQ SN:PGA_scaffold65334__1_contigs__length_27707 LN:27707 skipping SAM header line: @SQ SN:PGA_scaffold65342__1_contigs__length_11072 LN:11072 skipping SAM header line: @SQ SN:PGA_scaffold65343__1_contigs__length_19992 LN:19992 skipping SAM header line: @SQ SN:PGA_scaffold65345__1_contigs__length_22960 LN:22960 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold65404__1_contigs__length_19808 LN:19808 skipping SAM header line: @SQ SN:PGA_scaffold65406__1_contigs__length_15764 LN:15764 skipping SAM header line: @SQ SN:PGA_scaffold65410__1_contigs__length_18666 LN:18666 skipping SAM header line: @SQ SN:PGA_scaffold65427__1_contigs__length_16157 LN:16157 skipping SAM header line: @SQ SN:PGA_scaffold65428__1_contigs__length_13601 LN:13601 skipping SAM header line: @SQ SN:PGA_scaffold65433__1_contigs__length_18232 LN:18232 skipping SAM header line: @SQ SN:PGA_scaffold65456__1_contigs__length_14439 LN:14439 skipping SAM header line: @SQ SN:PGA_scaffold65460__1_contigs__length_18068 LN:18068 skipping SAM header line: @SQ SN:PGA_scaffold65461__1_contigs__length_37665 LN:37665 skipping SAM header line: @SQ SN:PGA_scaffold65463__1_contigs__length_10091 LN:10091 skipping SAM header line: @SQ SN:PGA_scaffold65465__1_contigs__length_31799 LN:31799 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold65508__1_contigs__length_27459 LN:27459 skipping SAM header line: @SQ SN:PGA_scaffold65509__1_contigs__length_28239 LN:28239 skipping SAM header line: @SQ SN:PGA_scaffold65510__1_contigs__length_14919 LN:14919 skipping SAM header line: @SQ SN:PGA_scaffold65513__1_contigs__length_10904 LN:10904 skipping SAM header line: @SQ SN:PGA_scaffold65517__1_contigs__length_15888 LN:15888 skipping SAM header line: @SQ SN:PGA_scaffold65518__1_contigs__length_17344 LN:17344 skipping SAM header line: @SQ SN:PGA_scaffold65519__1_contigs__length_25989 LN:25989 skipping SAM header line: @SQ SN:PGA_scaffold65524__1_contigs__length_29654 LN:29654 skipping SAM header line: @SQ SN:PGA_scaffold65529__1_contigs__length_14937 LN:14937 skipping SAM header line: @SQ SN:PGA_scaffold65532__1_contigs__length_13710 LN:13710 skipping SAM header line: @SQ SN:PGA_scaffold65536__1_contigs__length_21189 LN:21189 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold66227__1_contigs__length_18370 LN:18370 skipping SAM header line: @SQ SN:PGA_scaffold66228__1_contigs__length_11413 LN:11413 skipping SAM header line: @SQ SN:PGA_scaffold66231__1_contigs__length_17155 LN:17155 skipping SAM header line: @SQ SN:PGA_scaffold66249__1_contigs__length_10879 LN:10879 skipping SAM header line: @SQ SN:PGA_scaffold66255__1_contigs__length_16411 LN:16411 skipping SAM header line: @SQ SN:PGA_scaffold66275__1_contigs__length_11711 LN:11711 skipping SAM header line: @SQ SN:PGA_scaffold66276__1_contigs__length_39820 LN:39820 skipping SAM header line: @SQ SN:PGA_scaffold66279__1_contigs__length_13482 LN:13482 skipping SAM header line: @SQ SN:PGA_scaffold66293__1_contigs__length_33304 LN:33304 skipping SAM header line: @SQ SN:PGA_scaffold66299__1_contigs__length_14420 LN:14420 skipping SAM header line: @SQ SN:PGA_scaffold66312__1_contigs__length_23465 LN:23465 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold66348__1_contigs__length_24727 LN:24727 skipping SAM header line: @SQ SN:PGA_scaffold66351__1_contigs__length_16809 LN:16809 skipping SAM header line: @SQ SN:PGA_scaffold66354__1_contigs__length_13066 LN:13066 skipping SAM header line: @SQ SN:PGA_scaffold66370__1_contigs__length_14947 LN:14947 skipping SAM header line: @SQ SN:PGA_scaffold66372__1_contigs__length_10922 LN:10922 skipping SAM header line: @SQ SN:PGA_scaffold66373__1_contigs__length_11820 LN:11820 skipping SAM header line: @SQ SN:PGA_scaffold66379__1_contigs__length_24336 LN:24336 skipping SAM header line: @SQ SN:PGA_scaffold66380__1_contigs__length_16348 LN:16348 skipping SAM header line: @SQ SN:PGA_scaffold66384__1_contigs__length_11444 LN:11444 skipping SAM header line: @SQ SN:PGA_scaffold66389__1_contigs__length_12655 LN:12655 skipping SAM header line: @SQ SN:PGA_scaffold66391__1_contigs__length_17056 LN:17056 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold67258__1_contigs__length_14724 LN:14724 skipping SAM header line: @SQ SN:PGA_scaffold67259__1_contigs__length_15511 LN:15511 skipping SAM header line: @SQ SN:PGA_scaffold67260__1_contigs__length_10570 LN:10570 skipping SAM header line: @SQ SN:PGA_scaffold67261__1_contigs__length_29079 LN:29079 skipping SAM header line: @SQ SN:PGA_scaffold67269__1_contigs__length_23124 LN:23124 skipping SAM header line: @SQ SN:PGA_scaffold67272__1_contigs__length_13313 LN:13313 skipping SAM header line: @SQ SN:PGA_scaffold67279__1_contigs__length_19060 LN:19060 skipping SAM header line: @SQ SN:PGA_scaffold67280__1_contigs__length_31885 LN:31885 skipping SAM header line: @SQ SN:PGA_scaffold67288__1_contigs__length_10930 LN:10930 skipping SAM header line: @SQ SN:PGA_scaffold67294__1_contigs__length_50832 LN:50832 skipping SAM header line: @SQ SN:PGA_scaffold67297__1_contigs__length_13163 LN:13163 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold67338__1_contigs__length_10772 LN:10772 skipping SAM header line: @SQ SN:PGA_scaffold67342__1_contigs__length_17186 LN:17186 skipping SAM header line: @SQ SN:PGA_scaffold67345__1_contigs__length_11700 LN:11700 skipping SAM header line: @SQ SN:PGA_scaffold67346__1_contigs__length_32090 LN:32090 skipping SAM header line: @SQ SN:PGA_scaffold67352__1_contigs__length_20103 LN:20103 skipping SAM header line: @SQ SN:PGA_scaffold67354__1_contigs__length_12581 LN:12581 skipping SAM header line: @SQ SN:PGA_scaffold67358__1_contigs__length_24187 LN:24187 skipping SAM header line: @SQ SN:PGA_scaffold67362__1_contigs__length_18900 LN:18900 skipping SAM header line: @SQ SN:PGA_scaffold67365__1_contigs__length_13635 LN:13635 skipping SAM header line: @SQ SN:PGA_scaffold67367__1_contigs__length_29955 LN:29955 skipping SAM header line: @SQ SN:PGA_scaffold67370__1_contigs__length_14467 LN:14467 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold67401__1_contigs__length_21931 LN:21931 skipping SAM header line: @SQ SN:PGA_scaffold67407__1_contigs__length_73205 LN:73205 skipping SAM header line: @SQ SN:PGA_scaffold67409__1_contigs__length_30272 LN:30272 skipping SAM header line: @SQ SN:PGA_scaffold67413__1_contigs__length_20291 LN:20291 skipping SAM header line: @SQ SN:PGA_scaffold67415__1_contigs__length_21745 LN:21745 skipping SAM header line: @SQ SN:PGA_scaffold67421__1_contigs__length_10999 LN:10999 skipping SAM header line: @SQ SN:PGA_scaffold67432__1_contigs__length_10154 LN:10154 skipping SAM header line: @SQ SN:PGA_scaffold67437__1_contigs__length_10097 LN:10097 skipping SAM header line: @SQ SN:PGA_scaffold67438__1_contigs__length_17579 LN:17579 skipping SAM header line: @SQ SN:PGA_scaffold67439__1_contigs__length_14696 LN:14696 skipping SAM header line: @SQ SN:PGA_scaffold67446__1_contigs__length_12030 LN:12030 skipping SAM header line: @SQ 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SN:PGA_scaffold68049__1_contigs__length_34344 LN:34344 skipping SAM header line: @SQ SN:PGA_scaffold68053__1_contigs__length_31000 LN:31000 skipping SAM header line: @SQ SN:PGA_scaffold68054__1_contigs__length_26015 LN:26015 skipping SAM header line: @SQ SN:PGA_scaffold68058__1_contigs__length_13335 LN:13335 skipping SAM header line: @SQ SN:PGA_scaffold68059__1_contigs__length_11745 LN:11745 skipping SAM header line: @SQ SN:PGA_scaffold68067__1_contigs__length_12148 LN:12148 skipping SAM header line: @SQ SN:PGA_scaffold68069__1_contigs__length_10546 LN:10546 skipping SAM header line: @SQ SN:PGA_scaffold68071__1_contigs__length_10712 LN:10712 skipping SAM header line: @SQ SN:PGA_scaffold68075__1_contigs__length_25456 LN:25456 skipping SAM header line: @SQ SN:PGA_scaffold68077__1_contigs__length_14893 LN:14893 skipping SAM header line: @SQ SN:PGA_scaffold68092__1_contigs__length_33414 LN:33414 skipping SAM header line: @SQ SN:PGA_scaffold68094__1_contigs__length_26524 LN:26524 skipping SAM header line: @SQ SN:PGA_scaffold68099__1_contigs__length_15938 LN:15938 skipping SAM header line: @SQ SN:PGA_scaffold68100__1_contigs__length_14992 LN:14992 skipping SAM header line: @SQ SN:PGA_scaffold68102__1_contigs__length_15080 LN:15080 skipping SAM header line: @SQ SN:PGA_scaffold68106__1_contigs__length_11446 LN:11446 skipping SAM header line: @SQ SN:PGA_scaffold68108__1_contigs__length_11156 LN:11156 skipping SAM header line: @SQ SN:PGA_scaffold68116__1_contigs__length_17061 LN:17061 skipping SAM header line: @SQ SN:PGA_scaffold68118__1_contigs__length_11257 LN:11257 skipping SAM header line: @SQ SN:PGA_scaffold68130__1_contigs__length_14165 LN:14165 skipping SAM header line: @SQ SN:PGA_scaffold68142__1_contigs__length_10694 LN:10694 skipping SAM header line: @SQ SN:PGA_scaffold68150__1_contigs__length_50783 LN:50783 skipping SAM header line: @SQ SN:PGA_scaffold68157__1_contigs__length_34106 LN:34106 skipping SAM header line: @SQ SN:PGA_scaffold68161__1_contigs__length_17929 LN:17929 skipping SAM header line: @SQ SN:PGA_scaffold68164__1_contigs__length_14483 LN:14483 skipping SAM header line: @SQ SN:PGA_scaffold68170__1_contigs__length_15919 LN:15919 skipping SAM header line: @SQ SN:PGA_scaffold68173__1_contigs__length_11823 LN:11823 skipping SAM header line: @SQ SN:PGA_scaffold68183__1_contigs__length_13945 LN:13945 skipping SAM header line: @SQ SN:PGA_scaffold68184__1_contigs__length_41355 LN:41355 skipping SAM header line: @SQ SN:PGA_scaffold68192__1_contigs__length_14261 LN:14261 skipping SAM header line: @SQ SN:PGA_scaffold68193__1_contigs__length_46031 LN:46031 skipping SAM header line: @SQ SN:PGA_scaffold68195__1_contigs__length_13592 LN:13592 skipping SAM header line: @SQ SN:PGA_scaffold68203__1_contigs__length_16469 LN:16469 skipping SAM header line: @SQ SN:PGA_scaffold68204__1_contigs__length_21746 LN:21746 skipping SAM header line: @SQ SN:PGA_scaffold68205__1_contigs__length_30954 LN:30954 skipping SAM header line: @SQ SN:PGA_scaffold68209__1_contigs__length_24164 LN:24164 skipping SAM header line: @SQ SN:PGA_scaffold68216__1_contigs__length_14378 LN:14378 skipping SAM header line: @SQ SN:PGA_scaffold68218__1_contigs__length_13758 LN:13758 skipping SAM header line: @SQ SN:PGA_scaffold68222__1_contigs__length_15256 LN:15256 skipping SAM header line: @SQ SN:PGA_scaffold68225__1_contigs__length_13708 LN:13708 skipping SAM header line: @SQ SN:PGA_scaffold68226__1_contigs__length_11508 LN:11508 skipping SAM header line: @SQ SN:PGA_scaffold68228__1_contigs__length_14315 LN:14315 skipping SAM header line: @SQ SN:PGA_scaffold68230__1_contigs__length_15785 LN:15785 skipping SAM header line: @SQ SN:PGA_scaffold68236__1_contigs__length_13511 LN:13511 skipping SAM header line: @SQ SN:PGA_scaffold68241__1_contigs__length_16089 LN:16089 skipping SAM header line: @SQ SN:PGA_scaffold68242__1_contigs__length_10917 LN:10917 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68272__1_contigs__length_21275 LN:21275 skipping SAM header line: @SQ SN:PGA_scaffold68273__1_contigs__length_46075 LN:46075 skipping SAM header line: @SQ SN:PGA_scaffold68274__1_contigs__length_63866 LN:63866 skipping SAM header line: @SQ SN:PGA_scaffold68275__1_contigs__length_20919 LN:20919 skipping SAM header line: @SQ SN:PGA_scaffold68283__1_contigs__length_24754 LN:24754 skipping SAM header line: @SQ SN:PGA_scaffold68284__1_contigs__length_23423 LN:23423 skipping SAM header line: @SQ SN:PGA_scaffold68295__1_contigs__length_23211 LN:23211 skipping SAM header line: @SQ SN:PGA_scaffold68298__1_contigs__length_11817 LN:11817 skipping SAM header line: @SQ SN:PGA_scaffold68304__1_contigs__length_19247 LN:19247 skipping SAM header line: @SQ SN:PGA_scaffold68307__1_contigs__length_14020 LN:14020 skipping SAM header line: @SQ SN:PGA_scaffold68308__1_contigs__length_10949 LN:10949 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68344__1_contigs__length_21157 LN:21157 skipping SAM header line: @SQ SN:PGA_scaffold68347__1_contigs__length_10227 LN:10227 skipping SAM header line: @SQ SN:PGA_scaffold68349__1_contigs__length_27523 LN:27523 skipping SAM header line: @SQ SN:PGA_scaffold68355__1_contigs__length_44244 LN:44244 skipping SAM header line: @SQ SN:PGA_scaffold68357__1_contigs__length_26793 LN:26793 skipping SAM header line: @SQ SN:PGA_scaffold68358__1_contigs__length_25963 LN:25963 skipping SAM header line: @SQ SN:PGA_scaffold68363__1_contigs__length_11934 LN:11934 skipping SAM header line: @SQ SN:PGA_scaffold68364__1_contigs__length_27979 LN:27979 skipping SAM header line: @SQ SN:PGA_scaffold68372__1_contigs__length_24098 LN:24098 skipping SAM header line: @SQ SN:PGA_scaffold68373__1_contigs__length_13660 LN:13660 skipping SAM header line: @SQ SN:PGA_scaffold68378__1_contigs__length_16676 LN:16676 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68413__1_contigs__length_11384 LN:11384 skipping SAM header line: @SQ SN:PGA_scaffold68419__1_contigs__length_27677 LN:27677 skipping SAM header line: @SQ SN:PGA_scaffold68425__1_contigs__length_32148 LN:32148 skipping SAM header line: @SQ SN:PGA_scaffold68426__1_contigs__length_11324 LN:11324 skipping SAM header line: @SQ SN:PGA_scaffold68430__1_contigs__length_21994 LN:21994 skipping SAM header line: @SQ SN:PGA_scaffold68431__1_contigs__length_13242 LN:13242 skipping SAM header line: @SQ SN:PGA_scaffold68437__1_contigs__length_19513 LN:19513 skipping SAM header line: @SQ SN:PGA_scaffold68438__1_contigs__length_17421 LN:17421 skipping SAM header line: @SQ SN:PGA_scaffold68439__1_contigs__length_18726 LN:18726 skipping SAM header line: @SQ SN:PGA_scaffold68446__1_contigs__length_20675 LN:20675 skipping SAM header line: @SQ SN:PGA_scaffold68448__1_contigs__length_13184 LN:13184 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68844__1_contigs__length_19621 LN:19621 skipping SAM header line: @SQ SN:PGA_scaffold68845__1_contigs__length_27874 LN:27874 skipping SAM header line: @SQ SN:PGA_scaffold68849__1_contigs__length_42390 LN:42390 skipping SAM header line: @SQ SN:PGA_scaffold68855__1_contigs__length_38462 LN:38462 skipping SAM header line: @SQ SN:PGA_scaffold68858__1_contigs__length_37103 LN:37103 skipping SAM header line: @SQ SN:PGA_scaffold68862__1_contigs__length_25180 LN:25180 skipping SAM header line: @SQ SN:PGA_scaffold68866__1_contigs__length_15500 LN:15500 skipping SAM header line: @SQ SN:PGA_scaffold68867__1_contigs__length_29477 LN:29477 skipping SAM header line: @SQ SN:PGA_scaffold68876__1_contigs__length_15966 LN:15966 skipping SAM header line: @SQ SN:PGA_scaffold68878__1_contigs__length_23378 LN:23378 skipping SAM header line: @SQ SN:PGA_scaffold68883__1_contigs__length_12697 LN:12697 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold68932__1_contigs__length_23589 LN:23589 skipping SAM header line: @SQ SN:PGA_scaffold68933__1_contigs__length_15943 LN:15943 skipping SAM header line: @SQ SN:PGA_scaffold68938__1_contigs__length_15636 LN:15636 skipping SAM header line: @SQ SN:PGA_scaffold68939__1_contigs__length_20900 LN:20900 skipping SAM header line: @SQ SN:PGA_scaffold68942__1_contigs__length_12458 LN:12458 skipping SAM header line: @SQ SN:PGA_scaffold68943__1_contigs__length_27006 LN:27006 skipping SAM header line: @SQ SN:PGA_scaffold68944__1_contigs__length_26741 LN:26741 skipping SAM header line: @SQ SN:PGA_scaffold68947__1_contigs__length_10936 LN:10936 skipping SAM header line: @SQ SN:PGA_scaffold68948__1_contigs__length_15370 LN:15370 skipping SAM header line: @SQ SN:PGA_scaffold68952__1_contigs__length_14184 LN:14184 skipping SAM header line: @SQ SN:PGA_scaffold68953__1_contigs__length_10104 LN:10104 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69025__1_contigs__length_21443 LN:21443 skipping SAM header line: @SQ SN:PGA_scaffold69031__1_contigs__length_49096 LN:49096 skipping SAM header line: @SQ SN:PGA_scaffold69036__1_contigs__length_10931 LN:10931 skipping SAM header line: @SQ SN:PGA_scaffold69039__1_contigs__length_29725 LN:29725 skipping SAM header line: @SQ SN:PGA_scaffold69046__1_contigs__length_29699 LN:29699 skipping SAM header line: @SQ SN:PGA_scaffold69048__1_contigs__length_14639 LN:14639 skipping SAM header line: @SQ SN:PGA_scaffold69053__1_contigs__length_10018 LN:10018 skipping SAM header line: @SQ SN:PGA_scaffold69056__1_contigs__length_16920 LN:16920 skipping SAM header line: @SQ SN:PGA_scaffold69057__1_contigs__length_12123 LN:12123 skipping SAM header line: @SQ SN:PGA_scaffold69064__1_contigs__length_30263 LN:30263 skipping SAM header line: @SQ SN:PGA_scaffold69066__1_contigs__length_41967 LN:41967 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69099__1_contigs__length_56136 LN:56136 skipping SAM header line: @SQ SN:PGA_scaffold69103__1_contigs__length_23145 LN:23145 skipping SAM header line: @SQ SN:PGA_scaffold69107__1_contigs__length_36690 LN:36690 skipping SAM header line: @SQ SN:PGA_scaffold69108__1_contigs__length_12404 LN:12404 skipping SAM header line: @SQ SN:PGA_scaffold69113__1_contigs__length_18132 LN:18132 skipping SAM header line: @SQ SN:PGA_scaffold69115__1_contigs__length_15937 LN:15937 skipping SAM header line: @SQ SN:PGA_scaffold69123__1_contigs__length_14399 LN:14399 skipping SAM header line: @SQ SN:PGA_scaffold69124__1_contigs__length_17133 LN:17133 skipping SAM header line: @SQ SN:PGA_scaffold69130__1_contigs__length_52115 LN:52115 skipping SAM header line: @SQ SN:PGA_scaffold69131__1_contigs__length_10220 LN:10220 skipping SAM header line: @SQ SN:PGA_scaffold69135__1_contigs__length_13963 LN:13963 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69193__1_contigs__length_11714 LN:11714 skipping SAM header line: @SQ SN:PGA_scaffold69199__1_contigs__length_27933 LN:27933 skipping SAM header line: @SQ SN:PGA_scaffold69200__1_contigs__length_19344 LN:19344 skipping SAM header line: @SQ SN:PGA_scaffold69202__1_contigs__length_19028 LN:19028 skipping SAM header line: @SQ SN:PGA_scaffold69217__1_contigs__length_20211 LN:20211 skipping SAM header line: @SQ SN:PGA_scaffold69225__1_contigs__length_14733 LN:14733 skipping SAM header line: @SQ SN:PGA_scaffold69232__1_contigs__length_20771 LN:20771 skipping SAM header line: @SQ SN:PGA_scaffold69243__1_contigs__length_23878 LN:23878 skipping SAM header line: @SQ SN:PGA_scaffold69247__1_contigs__length_16374 LN:16374 skipping SAM header line: @SQ SN:PGA_scaffold69248__1_contigs__length_21363 LN:21363 skipping SAM header line: @SQ SN:PGA_scaffold69250__1_contigs__length_10644 LN:10644 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69292__1_contigs__length_13647 LN:13647 skipping SAM header line: @SQ SN:PGA_scaffold69294__1_contigs__length_33022 LN:33022 skipping SAM header line: @SQ SN:PGA_scaffold69296__1_contigs__length_14922 LN:14922 skipping SAM header line: @SQ SN:PGA_scaffold69299__1_contigs__length_11048 LN:11048 skipping SAM header line: @SQ SN:PGA_scaffold69301__1_contigs__length_12152 LN:12152 skipping SAM header line: @SQ SN:PGA_scaffold69306__1_contigs__length_12978 LN:12978 skipping SAM header line: @SQ SN:PGA_scaffold69310__1_contigs__length_18259 LN:18259 skipping SAM header line: @SQ SN:PGA_scaffold69311__1_contigs__length_34239 LN:34239 skipping SAM header line: @SQ SN:PGA_scaffold69315__1_contigs__length_15505 LN:15505 skipping SAM header line: @SQ SN:PGA_scaffold69316__1_contigs__length_24525 LN:24525 skipping SAM header line: @SQ SN:PGA_scaffold69318__1_contigs__length_21365 LN:21365 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69749__1_contigs__length_15526 LN:15526 skipping SAM header line: @SQ SN:PGA_scaffold69750__1_contigs__length_20950 LN:20950 skipping SAM header line: @SQ SN:PGA_scaffold69752__1_contigs__length_25204 LN:25204 skipping SAM header line: @SQ SN:PGA_scaffold69754__1_contigs__length_11668 LN:11668 skipping SAM header line: @SQ SN:PGA_scaffold69757__1_contigs__length_13015 LN:13015 skipping SAM header line: @SQ SN:PGA_scaffold69766__1_contigs__length_10093 LN:10093 skipping SAM header line: @SQ SN:PGA_scaffold69767__1_contigs__length_14271 LN:14271 skipping SAM header line: @SQ SN:PGA_scaffold69769__1_contigs__length_67326 LN:67326 skipping SAM header line: @SQ SN:PGA_scaffold69772__1_contigs__length_28251 LN:28251 skipping SAM header line: @SQ SN:PGA_scaffold69777__1_contigs__length_11173 LN:11173 skipping SAM header line: @SQ SN:PGA_scaffold69780__1_contigs__length_36085 LN:36085 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69810__1_contigs__length_17927 LN:17927 skipping SAM header line: @SQ SN:PGA_scaffold69817__1_contigs__length_16482 LN:16482 skipping SAM header line: @SQ SN:PGA_scaffold69818__1_contigs__length_17331 LN:17331 skipping SAM header line: @SQ SN:PGA_scaffold69820__1_contigs__length_11208 LN:11208 skipping SAM header line: @SQ SN:PGA_scaffold69826__1_contigs__length_27192 LN:27192 skipping SAM header line: @SQ SN:PGA_scaffold69827__1_contigs__length_14106 LN:14106 skipping SAM header line: @SQ SN:PGA_scaffold69829__1_contigs__length_34810 LN:34810 skipping SAM header line: @SQ SN:PGA_scaffold69830__1_contigs__length_24232 LN:24232 skipping SAM header line: @SQ SN:PGA_scaffold69831__1_contigs__length_18481 LN:18481 skipping SAM header line: @SQ SN:PGA_scaffold69835__1_contigs__length_10896 LN:10896 skipping SAM header line: @SQ SN:PGA_scaffold69838__1_contigs__length_17950 LN:17950 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold69910__1_contigs__length_13059 LN:13059 skipping SAM header line: @SQ SN:PGA_scaffold69912__1_contigs__length_19133 LN:19133 skipping SAM header line: @SQ SN:PGA_scaffold69919__1_contigs__length_20023 LN:20023 skipping SAM header line: @SQ SN:PGA_scaffold69922__1_contigs__length_19061 LN:19061 skipping SAM header line: @SQ SN:PGA_scaffold69924__1_contigs__length_44446 LN:44446 skipping SAM header line: @SQ SN:PGA_scaffold69928__1_contigs__length_10623 LN:10623 skipping SAM header line: @SQ SN:PGA_scaffold69929__1_contigs__length_17877 LN:17877 skipping SAM header line: @SQ SN:PGA_scaffold69930__1_contigs__length_16010 LN:16010 skipping SAM header line: @SQ SN:PGA_scaffold69932__1_contigs__length_11910 LN:11910 skipping SAM header line: @SQ SN:PGA_scaffold69935__1_contigs__length_32162 LN:32162 skipping SAM header line: @SQ SN:PGA_scaffold69937__1_contigs__length_17078 LN:17078 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70532__1_contigs__length_10801 LN:10801 skipping SAM header line: @SQ SN:PGA_scaffold70533__1_contigs__length_26547 LN:26547 skipping SAM header line: @SQ SN:PGA_scaffold70534__1_contigs__length_18255 LN:18255 skipping SAM header line: @SQ SN:PGA_scaffold70535__1_contigs__length_26427 LN:26427 skipping SAM header line: @SQ SN:PGA_scaffold70541__1_contigs__length_14321 LN:14321 skipping SAM header line: @SQ SN:PGA_scaffold70543__1_contigs__length_23174 LN:23174 skipping SAM header line: @SQ SN:PGA_scaffold70546__1_contigs__length_14031 LN:14031 skipping SAM header line: @SQ SN:PGA_scaffold70549__1_contigs__length_17268 LN:17268 skipping SAM header line: @SQ SN:PGA_scaffold70550__1_contigs__length_11747 LN:11747 skipping SAM header line: @SQ SN:PGA_scaffold70553__1_contigs__length_17810 LN:17810 skipping SAM header line: @SQ SN:PGA_scaffold70554__1_contigs__length_16333 LN:16333 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold70597__1_contigs__length_32895 LN:32895 skipping SAM header line: @SQ SN:PGA_scaffold70601__1_contigs__length_11910 LN:11910 skipping SAM header line: @SQ SN:PGA_scaffold70603__1_contigs__length_11417 LN:11417 skipping SAM header line: @SQ SN:PGA_scaffold70605__1_contigs__length_25355 LN:25355 skipping SAM header line: @SQ SN:PGA_scaffold70612__1_contigs__length_11139 LN:11139 skipping SAM header line: @SQ SN:PGA_scaffold70614__1_contigs__length_13905 LN:13905 skipping SAM header line: @SQ SN:PGA_scaffold70621__1_contigs__length_11716 LN:11716 skipping SAM header line: @SQ SN:PGA_scaffold70628__1_contigs__length_97563 LN:97563 skipping SAM header line: @SQ SN:PGA_scaffold70629__1_contigs__length_23304 LN:23304 skipping SAM header line: @SQ SN:PGA_scaffold70631__1_contigs__length_11559 LN:11559 skipping SAM header line: @SQ SN:PGA_scaffold70637__1_contigs__length_38808 LN:38808 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71224__1_contigs__length_17631 LN:17631 skipping SAM header line: @SQ SN:PGA_scaffold71232__1_contigs__length_34336 LN:34336 skipping SAM header line: @SQ SN:PGA_scaffold71233__1_contigs__length_13104 LN:13104 skipping SAM header line: @SQ SN:PGA_scaffold71242__1_contigs__length_41800 LN:41800 skipping SAM header line: @SQ SN:PGA_scaffold71250__1_contigs__length_10262 LN:10262 skipping SAM header line: @SQ SN:PGA_scaffold71254__1_contigs__length_14505 LN:14505 skipping SAM header line: @SQ SN:PGA_scaffold71259__1_contigs__length_21342 LN:21342 skipping SAM header line: @SQ SN:PGA_scaffold71267__1_contigs__length_28487 LN:28487 skipping SAM header line: @SQ SN:PGA_scaffold71269__1_contigs__length_10506 LN:10506 skipping SAM header line: @SQ SN:PGA_scaffold71274__1_contigs__length_40536 LN:40536 skipping SAM header line: @SQ SN:PGA_scaffold71277__1_contigs__length_12658 LN:12658 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71319__1_contigs__length_16956 LN:16956 skipping SAM header line: @SQ SN:PGA_scaffold71321__1_contigs__length_24320 LN:24320 skipping SAM header line: @SQ SN:PGA_scaffold71329__1_contigs__length_10043 LN:10043 skipping SAM header line: @SQ SN:PGA_scaffold71330__1_contigs__length_14114 LN:14114 skipping SAM header line: @SQ SN:PGA_scaffold71339__1_contigs__length_31076 LN:31076 skipping SAM header line: @SQ SN:PGA_scaffold71341__1_contigs__length_20560 LN:20560 skipping SAM header line: @SQ SN:PGA_scaffold71346__1_contigs__length_42813 LN:42813 skipping SAM header line: @SQ SN:PGA_scaffold71347__1_contigs__length_19551 LN:19551 skipping SAM header line: @SQ SN:PGA_scaffold71351__1_contigs__length_13906 LN:13906 skipping SAM header line: @SQ SN:PGA_scaffold71352__1_contigs__length_24380 LN:24380 skipping SAM header line: @SQ SN:PGA_scaffold71357__1_contigs__length_16993 LN:16993 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71422__1_contigs__length_21375 LN:21375 skipping SAM header line: @SQ SN:PGA_scaffold71424__1_contigs__length_10310 LN:10310 skipping SAM header line: @SQ SN:PGA_scaffold71428__1_contigs__length_15675 LN:15675 skipping SAM header line: @SQ SN:PGA_scaffold71429__1_contigs__length_10100 LN:10100 skipping SAM header line: @SQ SN:PGA_scaffold71439__1_contigs__length_17437 LN:17437 skipping SAM header line: @SQ SN:PGA_scaffold71443__1_contigs__length_10497 LN:10497 skipping SAM header line: @SQ SN:PGA_scaffold71444__1_contigs__length_12169 LN:12169 skipping SAM header line: @SQ SN:PGA_scaffold71453__1_contigs__length_16930 LN:16930 skipping SAM header line: @SQ SN:PGA_scaffold71455__1_contigs__length_57134 LN:57134 skipping SAM header line: @SQ SN:PGA_scaffold71456__1_contigs__length_21591 LN:21591 skipping SAM header line: @SQ SN:PGA_scaffold71463__1_contigs__length_12793 LN:12793 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71515__1_contigs__length_12184 LN:12184 skipping SAM header line: @SQ SN:PGA_scaffold71519__1_contigs__length_17257 LN:17257 skipping SAM header line: @SQ SN:PGA_scaffold71520__1_contigs__length_33829 LN:33829 skipping SAM header line: @SQ SN:PGA_scaffold71526__1_contigs__length_11944 LN:11944 skipping SAM header line: @SQ SN:PGA_scaffold71527__1_contigs__length_11619 LN:11619 skipping SAM header line: @SQ SN:PGA_scaffold71528__1_contigs__length_39316 LN:39316 skipping SAM header line: @SQ SN:PGA_scaffold71531__1_contigs__length_14810 LN:14810 skipping SAM header line: @SQ SN:PGA_scaffold71532__1_contigs__length_14594 LN:14594 skipping SAM header line: @SQ SN:PGA_scaffold71536__1_contigs__length_20871 LN:20871 skipping SAM header line: @SQ SN:PGA_scaffold71542__1_contigs__length_26523 LN:26523 skipping SAM header line: @SQ SN:PGA_scaffold71545__1_contigs__length_25677 LN:25677 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold71591__1_contigs__length_21903 LN:21903 skipping SAM header line: @SQ SN:PGA_scaffold71592__1_contigs__length_23259 LN:23259 skipping SAM header line: @SQ SN:PGA_scaffold71600__1_contigs__length_29560 LN:29560 skipping SAM header line: @SQ SN:PGA_scaffold71601__1_contigs__length_14244 LN:14244 skipping SAM header line: @SQ SN:PGA_scaffold71603__1_contigs__length_20365 LN:20365 skipping SAM header line: @SQ SN:PGA_scaffold71605__1_contigs__length_16431 LN:16431 skipping SAM header line: @SQ SN:PGA_scaffold71607__1_contigs__length_11218 LN:11218 skipping SAM header line: @SQ SN:PGA_scaffold71609__1_contigs__length_13975 LN:13975 skipping SAM header line: @SQ SN:PGA_scaffold71615__1_contigs__length_27719 LN:27719 skipping SAM header line: @SQ SN:PGA_scaffold71617__1_contigs__length_12858 LN:12858 skipping SAM header line: @SQ SN:PGA_scaffold71619__1_contigs__length_10126 LN:10126 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72066__1_contigs__length_26791 LN:26791 skipping SAM header line: @SQ SN:PGA_scaffold72068__1_contigs__length_34189 LN:34189 skipping SAM header line: @SQ SN:PGA_scaffold72069__1_contigs__length_33571 LN:33571 skipping SAM header line: @SQ SN:PGA_scaffold72071__1_contigs__length_21947 LN:21947 skipping SAM header line: @SQ SN:PGA_scaffold72073__1_contigs__length_17665 LN:17665 skipping SAM header line: @SQ SN:PGA_scaffold72080__1_contigs__length_14524 LN:14524 skipping SAM header line: @SQ SN:PGA_scaffold72089__1_contigs__length_18781 LN:18781 skipping SAM header line: @SQ SN:PGA_scaffold72098__1_contigs__length_32300 LN:32300 skipping SAM header line: @SQ SN:PGA_scaffold72102__1_contigs__length_48320 LN:48320 skipping SAM header line: @SQ SN:PGA_scaffold72105__1_contigs__length_15735 LN:15735 skipping SAM header line: @SQ SN:PGA_scaffold72110__1_contigs__length_29824 LN:29824 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72159__1_contigs__length_13324 LN:13324 skipping SAM header line: @SQ SN:PGA_scaffold72160__1_contigs__length_14793 LN:14793 skipping SAM header line: @SQ SN:PGA_scaffold72163__1_contigs__length_14690 LN:14690 skipping SAM header line: @SQ SN:PGA_scaffold72179__1_contigs__length_28764 LN:28764 skipping SAM header line: @SQ SN:PGA_scaffold72182__1_contigs__length_22282 LN:22282 skipping SAM header line: @SQ SN:PGA_scaffold72184__1_contigs__length_12911 LN:12911 skipping SAM header line: @SQ SN:PGA_scaffold72185__1_contigs__length_19085 LN:19085 skipping SAM header line: @SQ SN:PGA_scaffold72190__1_contigs__length_16709 LN:16709 skipping SAM header line: @SQ SN:PGA_scaffold72191__1_contigs__length_12395 LN:12395 skipping SAM header line: @SQ SN:PGA_scaffold72192__1_contigs__length_36706 LN:36706 skipping SAM header line: @SQ SN:PGA_scaffold72203__1_contigs__length_32495 LN:32495 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72252__1_contigs__length_37979 LN:37979 skipping SAM header line: @SQ SN:PGA_scaffold72262__1_contigs__length_18008 LN:18008 skipping SAM header line: @SQ SN:PGA_scaffold72264__1_contigs__length_14375 LN:14375 skipping SAM header line: @SQ SN:PGA_scaffold72281__1_contigs__length_10963 LN:10963 skipping SAM header line: @SQ SN:PGA_scaffold72282__1_contigs__length_53999 LN:53999 skipping SAM header line: @SQ SN:PGA_scaffold72288__1_contigs__length_10035 LN:10035 skipping SAM header line: @SQ SN:PGA_scaffold72292__1_contigs__length_23034 LN:23034 skipping SAM header line: @SQ SN:PGA_scaffold72295__1_contigs__length_11368 LN:11368 skipping SAM header line: @SQ SN:PGA_scaffold72300__1_contigs__length_18906 LN:18906 skipping SAM header line: @SQ SN:PGA_scaffold72301__1_contigs__length_15846 LN:15846 skipping SAM header line: @SQ SN:PGA_scaffold72305__1_contigs__length_11996 LN:11996 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold72935__1_contigs__length_13122 LN:13122 skipping SAM header line: @SQ SN:PGA_scaffold72939__1_contigs__length_18626 LN:18626 skipping SAM header line: @SQ SN:PGA_scaffold72941__1_contigs__length_29716 LN:29716 skipping SAM header line: @SQ SN:PGA_scaffold72950__1_contigs__length_12540 LN:12540 skipping SAM header line: @SQ SN:PGA_scaffold72951__1_contigs__length_12704 LN:12704 skipping SAM header line: @SQ SN:PGA_scaffold72955__1_contigs__length_22998 LN:22998 skipping SAM header line: @SQ SN:PGA_scaffold72956__1_contigs__length_10117 LN:10117 skipping SAM header line: @SQ SN:PGA_scaffold72957__1_contigs__length_19615 LN:19615 skipping SAM header line: @SQ SN:PGA_scaffold72961__1_contigs__length_10449 LN:10449 skipping SAM header line: @SQ SN:PGA_scaffold72971__1_contigs__length_35934 LN:35934 skipping SAM header line: @SQ SN:PGA_scaffold72983__1_contigs__length_11856 LN:11856 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold77837__1_contigs__length_10601 LN:10601 skipping SAM header line: @SQ SN:PGA_scaffold77910__1_contigs__length_24661 LN:24661 skipping SAM header line: @SQ SN:PGA_scaffold77911__1_contigs__length_24672 LN:24672 skipping SAM header line: @SQ SN:PGA_scaffold77912__1_contigs__length_24672 LN:24672 skipping SAM header line: @SQ SN:PGA_scaffold77913__1_contigs__length_24661 LN:24661 skipping SAM header line: @SQ SN:PGA_scaffold78100__1_contigs__length_10380 LN:10380 skipping SAM header line: @SQ SN:PGA_scaffold78101__1_contigs__length_10380 LN:10380 skipping SAM header line: @SQ SN:PGA_scaffold78102__1_contigs__length_13875 LN:13875 skipping SAM header line: @SQ SN:PGA_scaffold78105__1_contigs__length_13875 LN:13875 skipping SAM header line: @SQ SN:PGA_scaffold78182__1_contigs__length_23159 LN:23159 skipping SAM header line: @SQ SN:PGA_scaffold78183__1_contigs__length_23159 LN:23159 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold78672__1_contigs__length_16523 LN:16523 skipping SAM header line: @SQ SN:PGA_scaffold78673__1_contigs__length_16523 LN:16523 skipping SAM header line: @SQ SN:PGA_scaffold78674__1_contigs__length_17410 LN:17410 skipping SAM header line: @SQ SN:PGA_scaffold78675__1_contigs__length_17410 LN:17410 skipping SAM header line: @SQ SN:PGA_scaffold78676__1_contigs__length_14646 LN:14646 skipping SAM header line: @SQ SN:PGA_scaffold78677__1_contigs__length_14646 LN:14646 skipping SAM header line: @SQ SN:PGA_scaffold78678__1_contigs__length_16417 LN:16417 skipping SAM header line: @SQ SN:PGA_scaffold78679__1_contigs__length_16408 LN:16408 skipping SAM header line: @SQ SN:PGA_scaffold78680__1_contigs__length_16417 LN:16417 skipping SAM header line: @SQ SN:PGA_scaffold78681__1_contigs__length_16408 LN:16408 skipping SAM header line: @SQ SN:PGA_scaffold78682__1_contigs__length_12627 LN:12627 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold84135__1_contigs__length_23648 LN:23648 skipping SAM header line: @SQ SN:PGA_scaffold84458__1_contigs__length_10934 LN:10934 skipping SAM header line: @SQ SN:PGA_scaffold84459__1_contigs__length_10934 LN:10934 skipping SAM header line: @SQ SN:PGA_scaffold84538__1_contigs__length_11062 LN:11062 skipping SAM header line: @SQ SN:PGA_scaffold84539__1_contigs__length_16065 LN:16065 skipping SAM header line: @SQ SN:PGA_scaffold84540__1_contigs__length_11062 LN:11062 skipping SAM header line: @SQ SN:PGA_scaffold84541__1_contigs__length_16065 LN:16065 skipping SAM header line: @SQ SN:PGA_scaffold84566__1_contigs__length_12424 LN:12424 skipping SAM header line: @SQ SN:PGA_scaffold84567__1_contigs__length_12424 LN:12424 skipping SAM header line: @SQ SN:PGA_scaffold84570__1_contigs__length_34138 LN:34138 skipping SAM header line: @SQ SN:PGA_scaffold84571__1_contigs__length_34138 LN:34138 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold84919__1_contigs__length_19781 LN:19781 skipping SAM header line: @SQ SN:PGA_scaffold84920__1_contigs__length_19781 LN:19781 skipping SAM header line: @SQ SN:PGA_scaffold85023__1_contigs__length_11062 LN:11062 skipping SAM header line: @SQ SN:PGA_scaffold85024__1_contigs__length_16065 LN:16065 skipping SAM header line: @SQ SN:PGA_scaffold85025__1_contigs__length_11062 LN:11062 skipping SAM header line: @SQ SN:PGA_scaffold85026__1_contigs__length_16065 LN:16065 skipping SAM header line: @SQ SN:PGA_scaffold85097__1_contigs__length_14113 LN:14113 skipping SAM header line: @SQ SN:PGA_scaffold85098__1_contigs__length_14113 LN:14113 skipping SAM header line: @SQ SN:PGA_scaffold85258__1_contigs__length_10703 LN:10703 skipping SAM header line: @SQ SN:PGA_scaffold85259__1_contigs__length_10863 LN:10863 skipping SAM header line: @SQ SN:PGA_scaffold85265__1_contigs__length_10703 LN:10703 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold85340__1_contigs__length_13570 LN:13570 skipping SAM header line: @SQ SN:PGA_scaffold85453__1_contigs__length_10649 LN:10649 skipping SAM header line: @SQ SN:PGA_scaffold85456__1_contigs__length_10649 LN:10649 skipping SAM header line: @SQ SN:PGA_scaffold85477__1_contigs__length_10649 LN:10649 skipping SAM header line: @SQ SN:PGA_scaffold85480__1_contigs__length_10649 LN:10649 skipping SAM header line: @SQ SN:PGA_scaffold85593__1_contigs__length_15462 LN:15462 skipping SAM header line: @SQ SN:PGA_scaffold85594__1_contigs__length_15462 LN:15462 skipping SAM header line: @SQ SN:PGA_scaffold85595__1_contigs__length_10408 LN:10408 skipping SAM header line: @SQ SN:PGA_scaffold85598__1_contigs__length_10408 LN:10408 skipping SAM header line: @SQ SN:PGA_scaffold85703__1_contigs__length_10408 LN:10408 skipping SAM header line: @SQ SN:PGA_scaffold85704__1_contigs__length_10408 LN:10408 skipping SAM header line: @SQ 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SAM header line: @SQ SN:PGA_scaffold91241__1_contigs__length_13761 LN:13761 skipping SAM header line: @SQ SN:PGA_scaffold91245__1_contigs__length_11617 LN:11617 skipping SAM header line: @SQ SN:PGA_scaffold91246__1_contigs__length_13761 LN:13761 skipping SAM header line: @SQ SN:PGA_scaffold91250__1_contigs__length_11617 LN:11617 skipping SAM header line: @SQ SN:PGA_scaffold91286__1_contigs__length_14604 LN:14604 skipping SAM header line: @SQ SN:PGA_scaffold91287__1_contigs__length_14758 LN:14758 skipping SAM header line: @SQ SN:PGA_scaffold91290__1_contigs__length_14604 LN:14604 skipping SAM header line: @SQ SN:PGA_scaffold91291__1_contigs__length_14758 LN:14758 skipping SAM header line: @SQ SN:PGA_scaffold91313__1_contigs__length_10311 LN:10311 skipping SAM header line: @SQ SN:PGA_scaffold91315__1_contigs__length_10311 LN:10311 skipping SAM header line: @SQ SN:PGA_scaffold91347__1_contigs__length_12515 LN:12515 skipping SAM header line: @SQ 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SN:PGA_scaffold313647__2_contigs__length_5689983 LN:5689983 skipping SAM header line: @SQ SN:PGA_scaffold313648__2_contigs__length_3786466 LN:3786466 skipping SAM header line: @SQ SN:PGA_scaffold313649__2_contigs__length_2716785 LN:2716785 skipping SAM header line: @PG ID:Bismark VN:v0.19.0 CL:"bismark --path_to_bowtie /gscratch/srlab/programs/bowtie2-2.3.4.1-linux-x86_64 --samtools_path /gscratch/srlab/programs/samtools-1.9 --score_min L,0,-1.2 -I 60 -p 28 --genome /gscratch/srlab/strigg/data/Pgenr/Pgenr_070_10K/ -1 /gscratch/srlab/strigg/data/Pgenr/FASTQS/2019_broodstock_amb_v_lowpH/Tank3-15-16_trim_R1_001.fastq.gz -2 /gscratch/srlab/strigg/data/Pgenr/FASTQS/2019_broodstock_amb_v_lowpH/Tank3-15-16_trim_R2_001.fastq.gz -o /gscratch/srlab/strigg/analyses/20190415_10K" Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 Processed lines: 500000 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lines: 28000000 Processed lines: 27000000 Processed lines: 27500000 Processed lines: 27500000 Processed lines: 27500000 Processed lines: 27500000 Finished processing child process. Exiting.. 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Exiting.. Processed lines: 29000000 Processed lines: 28500000 Processed lines: 28500000 Processed lines: 28500000 Processed lines: 29000000 Processed lines: 28500000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 28500000 Processed lines: 28500000 Finished processing child process. Exiting.. Processed lines: 29000000 Processed lines: 29000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 28500000 Processed lines: 29000000 Processed lines: 28500000 Processed lines: 29000000 Processed lines: 29000000 Processed lines: 29000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 29000000 Processed lines: 29000000 Processed lines: 29000000 Processed lines: 29000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 29000000 Processed lines: 29000000 Finished processing child process. Exiting.. Processed lines: 29000000 Processed lines: 29000000 Processed lines: 29000000 Processed lines: 29000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 29000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Processed lines: 29000000 Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Finished processing child process. Exiting.. Now waiting for all child processes to complete Finished processing child process. Exiting.. Merging individual splitting reports into overall report: '/gscratch/srlab/strigg/analyses/20190415_10K/Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated_splitting_report.txt' Merging from these individual files: Processed 29241795 lines in total Total number of methylation call strings processed: 58483590 Final Cytosine Methylation Report ================================= Total number of C's analysed: 806340824 Total methylated C's in CpG context: 17588774 Total methylated C's in CHG context: 2609542 Total methylated C's in CHH context: 10514491 Total C to T conversions in CpG context: 78701763 Total C to T conversions in CHG context: 141620087 Total C to T conversions in CHH context: 555306167 C methylated in CpG context: 18.3% C methylated in CHG context: 1.8% C methylated in CHH context: 1.9% Merging individual M-bias reports into overall M-bias statistics from these 28 individual files: Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 93 Maximum read length of Read 2: 93 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Determining maximum read lengths for M-Bias plots Maximum read length of Read 1: 93 Maximum read length of Read 2: 93 Perl module GD::Graph::lines is not installed, skipping drawing M-bias plots (only writing out M-bias plot table) Deleting unused files ... /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OT_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CpG_CTOT_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CpG_CTOB_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OB_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OT_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CHG_CTOT_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CHG_CTOB_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OB_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OT_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept /gscratch/srlab/strigg/analyses/20190415_10K/CHH_CTOT_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CHH_CTOB_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt was empty -> deleted /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OB_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt contains data -> kept Using these input files: /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OT_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CpG_OB_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OT_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CHG_OB_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OT_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt /gscratch/srlab/strigg/analyses/20190415_10K/CHH_OB_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt Summary of parameters for bismark2bedGraph conversion: ====================================================== bedGraph output: Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz output directory: >/gscratch/srlab/strigg/analyses/20190415_10K/< remove whitespaces: no CX context: no (CpG context only, default) No-header selected: no Sorting method: Unix sort-based (smaller memory footprint, but slower) Sort buffer size: 2G Coverage threshold: 1 ============================================================================= Methylation information will now be written into a bedGraph and coverage file ============================================================================= Using the following files as Input: Writing bedGraph to file: Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz Also writing out a coverage file including counts methylated and unmethylated residues to file: Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bismark.cov.gz Changed directory to /gscratch/srlab/strigg/analyses/20190415_10K/ The genome of interest was specified to contain gazillions of chromosomes or scaffolds. Merging all input files and sorting everything in memory instead of writing out individual chromosome files... Writing all merged methylation calls to temp file Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz.methylation_calls.merged Finished writing methylation calls from CpG_OT_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt to merged temp file Finished writing methylation calls from CpG_OB_Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.txt to merged temp file Sorting input file Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz.methylation_calls.merged by positions (using -S of 2G) Successfully deleted the temporary input file Tank3-15-16_trim_R1_001_bismark_bt2_pe.deduplicated.bedGraph.gz.methylation_calls.merged Finished BedGraph conversion ...