File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated CpHs Unmethylated CpHs Methylated CHHs Unmethylated CHHs EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.bam 27014996 15600077 7982916 3424225 7778 2723291 12876786 291449034 10034961 29496188 1469857 58867342 3341240 188239446 EPI-113_S30_L005_R1_001_val_1_bismark_bt2_pe.bam 26302191 14908234 7816415 3570424 7118 2626788 12281446 283891949 9770479 28571961 1412552 57535825 3093013 183508119 EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.bam 28905983 15855321 9063761 3980473 6428 2815636 13039685 310042817 9991454 33514721 1473467 62516201 3407120 199139854 EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.bam 24140505 14219508 6858389 3054034 8574 2412714 11806794 275846395 9522649 28107159 1364555 55763455 3110238 177978339