CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 224124 380315 37.08 604439 2 203815 402806 33.60 606621 3 181889 352525 34.04 534414 4 183986 264810 41.00 448796 5 173497 220168 44.07 393665 6 171734 190292 47.44 362026 7 189208 184827 50.59 374035 8 89557 212630 29.64 302187 9 80400 194664 29.23 275064 10 81448 185942 30.46 267390 11 84589 189792 30.83 274381 12 81414 195223 29.43 276637 13 79537 200229 28.43 279766 14 74331 198434 27.25 272765 15 70855 200607 26.10 271462 16 65740 195629 25.15 261369 17 60914 191065 24.17 251979 18 63328 194055 24.60 257383 19 62473 196687 24.11 259160 20 63447 198210 24.25 261657 21 64277 201299 24.20 265576 22 62432 199100 23.87 261532 23 62161 197387 23.95 259548 24 61286 196134 23.81 257420 25 58895 195151 23.18 254046 26 59643 192422 23.66 252065 27 59935 198090 23.23 258025 28 61528 195312 23.96 256840 29 59713 201865 22.83 261578 30 58523 196718 22.93 255241 31 59947 194073 23.60 254020 32 58297 189730 23.50 248027 33 59050 191318 23.59 250368 34 60447 190228 24.11 250675 35 58600 189547 23.62 248147 36 58139 193273 23.12 251412 37 56615 189272 23.02 245887 38 56054 187547 23.01 243601 39 57648 190344 23.25 247992 40 58781 188000 23.82 246781 41 58547 189162 23.64 247709 42 58732 192697 23.36 251429 43 58384 192325 23.29 250709 44 57532 190476 23.20 248008 45 58631 190175 23.56 248806 46 59835 191671 23.79 251506 47 59286 188081 23.97 247367 48 59102 188984 23.82 248086 49 60223 189034 24.16 249257 50 58044 193056 23.12 251100 51 58597 191533 23.43 250130 52 58472 199396 22.68 257868 53 57601 189873 23.28 247474 54 56403 188582 23.02 244985 55 56458 183592 23.52 240050 56 55858 181377 23.55 237235 57 57285 184052 23.74 241337 58 57211 184586 23.66 241797 59 57804 185248 23.78 243052 60 56401 185857 23.28 242258 61 57342 184556 23.71 241898 62 56216 186795 23.13 243011 63 55111 184015 23.05 239126 64 55301 183275 23.18 238576 65 55725 179474 23.69 235199 66 55984 181090 23.61 237074 67 55728 177795 23.86 233523 68 54786 176648 23.67 231434 69 53742 175469 23.45 229211 70 53738 175094 23.48 228832 71 52782 174955 23.18 227737 72 52711 173409 23.31 226120 73 52147 171507 23.32 223654 74 51563 169737 23.30 221300 75 50883 169346 23.10 220229 76 50343 166904 23.17 217247 77 51352 166841 23.54 218193 78 50791 166800 23.34 217591 79 49507 165512 23.02 215019 80 48425 164915 22.70 213340 81 48033 163247 22.73 211280 82 46752 161635 22.44 208387 83 47742 163065 22.65 210807 84 48097 162854 22.80 210951 85 47584 161434 22.77 209018 86 46828 158100 22.85 204928 87 45434 157939 22.34 203373 88 45676 156265 22.62 201941 89 45100 155041 22.53 200141 90 45193 155157 22.56 200350 91 44840 152862 22.68 197702 92 43780 151545 22.41 195325 93 43314 152405 22.13 195719 94 43686 149644 22.60 193330 95 42851 148189 22.43 191040 96 43383 151457 22.27 194840 97 41989 145237 22.43 187226 98 39158 136924 22.24 176082 99 30371 107086 22.09 137457 100 39899 136467 22.62 176366 101 36381 135318 21.19 171699 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 331908 382450 46.46 714358 2 196096 340149 36.57 536245 3 76451 334153 18.62 410604 4 33790 346838 8.88 380628 5 19610 323294 5.72 342904 6 16022 317213 4.81 333235 7 13119 399137 3.18 412256 8 5794 429977 1.33 435771 9 4785 396956 1.19 401741 10 4719 376177 1.24 380896 11 5074 378361 1.32 383435 12 4963 381401 1.28 386364 13 4430 364773 1.20 369203 14 3884 364349 1.05 368233 15 3657 373165 0.97 376822 16 3391 373566 0.90 376957 17 3413 369033 0.92 372446 18 3478 368932 0.93 372410 19 3062 368673 0.82 371735 20 3262 386750 0.84 390012 21 3052 393885 0.77 396937 22 3258 389658 0.83 392916 23 3361 392264 0.85 395625 24 3143 397954 0.78 401097 25 3136 382236 0.81 385372 26 3706 389490 0.94 393196 27 3139 392122 0.79 395261 28 3058 390083 0.78 393141 29 3349 393812 0.84 397161 30 3155 399484 0.78 402639 31 3066 391151 0.78 394217 32 3048 392014 0.77 395062 33 3144 393783 0.79 396927 34 3119 386640 0.80 389759 35 3218 388898 0.82 392116 36 3177 391229 0.81 394406 37 3158 382198 0.82 385356 38 3389 387047 0.87 390436 39 3244 385710 0.83 388954 40 3048 382511 0.79 385559 41 3016 383705 0.78 386721 42 3101 387438 0.79 390539 43 2977 381751 0.77 384728 44 3005 387670 0.77 390675 45 3117 388831 0.80 391948 46 2977 383992 0.77 386969 47 3215 385144 0.83 388359 48 3145 391014 0.80 394159 49 3032 383950 0.78 386982 50 3216 384967 0.83 388183 51 3115 388049 0.80 391164 52 3103 386378 0.80 389481 53 3216 384965 0.83 388181 54 3470 391081 0.88 394551 55 3342 384601 0.86 387943 56 3289 388796 0.84 392085 57 3311 387954 0.85 391265 58 3893 384112 1.00 388005 59 3579 388282 0.91 391861 60 3649 391427 0.92 395076 61 3716 386034 0.95 389750 62 3790 388116 0.97 391906 63 3689 383809 0.95 387498 64 3927 382812 1.02 386739 65 4251 380310 1.11 384561 66 3959 376271 1.04 380230 67 3951 365935 1.07 369886 68 4009 370553 1.07 374562 69 3788 370160 1.01 373948 70 3783 366139 1.02 369922 71 3857 364412 1.05 368269 72 3708 364349 1.01 368057 73 3793 357833 1.05 361626 74 3776 357054 1.05 360830 75 3709 358240 1.02 361949 76 3745 349528 1.06 353273 77 3939 351581 1.11 355520 78 3694 347154 1.05 350848 79 3572 340029 1.04 343601 80 3629 338893 1.06 342522 81 3644 335691 1.07 339335 82 3605 332201 1.07 335806 83 3802 337392 1.11 341194 84 3728 337763 1.09 341491 85 3833 330106 1.15 333939 86 3796 333789 1.12 337585 87 3778 332977 1.12 336755 88 3775 326176 1.14 329951 89 3761 324137 1.15 327898 90 3737 324954 1.14 328691 91 3871 318727 1.20 322598 92 4062 319649 1.25 323711 93 4114 317826 1.28 321940 94 3983 312043 1.26 316026 95 4029 311195 1.28 315224 96 4042 309440 1.29 313482 97 3904 283787 1.36 287691 98 3725 260968 1.41 264693 99 2392 168226 1.40 170618 100 2702 172859 1.54 175561 101 5029 277886 1.78 282915 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 302360 434017 41.06 736377 2 141717 457826 23.64 599543 3 65023 580342 10.08 645365 4 51992 629550 7.63 681542 5 46089 748037 5.80 794126 6 37373 824371 4.34 861744 7 33798 1049067 3.12 1082865 8 20958 1126183 1.83 1147141 9 16404 1031802 1.56 1048206 10 16308 1009872 1.59 1026180 11 18438 1013157 1.79 1031595 12 16315 1038487 1.55 1054802 13 18119 1064953 1.67 1083072 14 18378 1095698 1.65 1114076 15 16532 1128522 1.44 1145054 16 16049 1157745 1.37 1173794 17 17871 1165727 1.51 1183598 18 16149 1211964 1.31 1228113 19 16054 1241899 1.28 1257953 20 17987 1278959 1.39 1296946 21 16205 1285350 1.25 1301555 22 17001 1289085 1.30 1306086 23 18279 1289953 1.40 1308232 24 16360 1291801 1.25 1308161 25 17159 1301837 1.30 1318996 26 18302 1312140 1.38 1330442 27 16518 1316871 1.24 1333389 28 16532 1319288 1.24 1335820 29 18112 1315868 1.36 1333980 30 16258 1303571 1.23 1319829 31 16314 1285409 1.25 1301723 32 17378 1296208 1.32 1313586 33 15885 1292288 1.21 1308173 34 17565 1301302 1.33 1318867 35 17954 1290087 1.37 1308041 36 16502 1302395 1.25 1318897 37 16085 1297585 1.22 1313670 38 18076 1304399 1.37 1322475 39 16324 1296127 1.24 1312451 40 16524 1300788 1.25 1317312 41 18563 1304244 1.40 1322807 42 16964 1314507 1.27 1331471 43 17459 1299558 1.33 1317017 44 17860 1308642 1.35 1326502 45 17055 1298695 1.30 1315750 46 16543 1302867 1.25 1319410 47 17773 1299660 1.35 1317433 48 16070 1301915 1.22 1317985 49 16204 1286667 1.24 1302871 50 17387 1284937 1.34 1302324 51 15742 1273423 1.22 1289165 52 16573 1271355 1.29 1287928 53 17460 1264989 1.36 1282449 54 16006 1269502 1.25 1285508 55 16669 1271037 1.29 1287706 56 17656 1267728 1.37 1285384 57 16108 1282239 1.24 1298347 58 17782 1269283 1.38 1287065 59 18189 1285238 1.40 1303427 60 15923 1264743 1.24 1280666 61 16915 1259729 1.32 1276644 62 17459 1251042 1.38 1268501 63 16269 1240868 1.29 1257137 64 17114 1232869 1.37 1249983 65 17101 1232392 1.37 1249493 66 15992 1225202 1.29 1241194 67 16142 1220294 1.31 1236436 68 16989 1214726 1.38 1231715 69 15836 1208740 1.29 1224576 70 16093 1205647 1.32 1221740 71 16988 1199271 1.40 1216259 72 15918 1195731 1.31 1211649 73 16740 1185083 1.39 1201823 74 17188 1181136 1.43 1198324 75 15538 1174796 1.31 1190334 76 15814 1170221 1.33 1186035 77 16729 1159844 1.42 1176573 78 14898 1149468 1.28 1164366 79 15325 1144179 1.32 1159504 80 16089 1136628 1.40 1152717 81 15286 1125959 1.34 1141245 82 15586 1118567 1.37 1134153 83 16163 1122192 1.42 1138355 84 14911 1109098 1.33 1124009 85 14713 1096491 1.32 1111204 86 15380 1087961 1.39 1103341 87 14232 1082628 1.30 1096860 88 14359 1079083 1.31 1093442 89 15308 1067968 1.41 1083276 90 14149 1064752 1.31 1078901 91 14714 1053228 1.38 1067942 92 15337 1053510 1.43 1068847 93 14075 1041654 1.33 1055729 94 14450 1033824 1.38 1048274 95 15402 1023550 1.48 1038952 96 14145 1004102 1.39 1018247 97 13876 979431 1.40 993307 98 14274 912166 1.54 926440 99 9181 633693 1.43 642874 100 9717 569441 1.68 579158 101 13745 916881 1.48 930626 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 134669 188493 41.67 323162 2 120010 171045 41.23 291055 3 130391 191366 40.52 321757 4 124354 215081 36.64 339435 5 52730 266906 16.50 319636 6 30504 144932 17.39 175436 7 28141 155388 15.33 183529 8 29968 145848 17.05 175816 9 26709 129718 17.07 156427 10 29585 142654 17.18 172239 11 31853 139801 18.56 171654 12 31056 135448 18.65 166504 13 31696 131955 19.37 163651 14 33431 133357 20.04 166788 15 32237 123990 20.63 156227 16 31263 120758 20.56 152021 17 37298 132692 21.94 169990 18 36436 125685 22.47 162121 19 34664 120899 22.28 155563 20 33040 119446 21.67 152486 21 34667 118176 22.68 152843 22 33641 120531 21.82 154172 23 31986 115952 21.62 147938 24 30569 109360 21.85 139929 25 33604 117659 22.22 151263 26 30951 112020 21.65 142971 27 33468 113114 22.83 146582 28 31526 109041 22.43 140567 29 32182 113055 22.16 145237 30 30791 104890 22.69 135681 31 30013 106775 21.94 136788 32 29013 101349 22.26 130362 33 31137 102412 23.32 133549 34 30846 105737 22.58 136583 35 36435 110831 24.74 147266 36 31665 100550 23.95 132215 37 31602 103935 23.32 135537 38 28759 101187 22.13 129946 39 29970 99331 23.18 129301 40 31324 100169 23.82 131493 41 29147 96222 23.25 125369 42 29183 99484 22.68 128667 43 29518 96881 23.35 126399 44 27609 93880 22.73 121489 45 32345 100430 24.36 132775 46 27513 89909 23.43 117422 47 27786 91670 23.26 119456 48 26857 90516 22.88 117373 49 26395 93825 21.96 120220 50 25258 86095 22.68 111353 51 25451 84772 23.09 110223 52 25871 86889 22.94 112760 53 25878 85049 23.33 110927 54 25336 84334 23.10 109670 55 24918 82698 23.15 107616 56 24065 82670 22.55 106735 57 24470 78854 23.68 103324 58 24098 79944 23.16 104042 59 23504 76367 23.53 99871 60 24273 78740 23.56 103013 61 21317 74802 22.18 96119 62 21477 73222 22.68 94699 63 22849 72143 24.05 94992 64 22083 72185 23.43 94268 65 21280 68536 23.69 89816 66 22334 71424 23.82 93758 67 20571 70334 22.63 90905 68 21720 71753 23.24 93473 69 20187 67746 22.96 87933 70 19906 67882 22.68 87788 71 20157 64824 23.72 84981 72 19407 63421 23.43 82828 73 19658 65409 23.11 85067 74 18094 63178 22.26 81272 75 18025 61819 22.58 79844 76 18442 61689 23.01 80131 77 18056 60044 23.12 78100 78 18522 60485 23.44 79007 79 17236 59834 22.36 77070 80 17191 58455 22.73 75646 81 16748 57772 22.47 74520 82 16944 57505 22.76 74449 83 16964 55642 23.36 72606 84 18295 58431 23.84 76726 85 16371 55703 22.71 72074 86 15885 54616 22.53 70501 87 15919 53132 23.05 69051 88 15933 53278 23.02 69211 89 16921 53484 24.03 70405 90 16524 53030 23.76 69554 91 15775 51756 23.36 67531 92 15213 51115 22.94 66328 93 15439 51467 23.08 66906 94 15249 50897 23.05 66146 95 15393 50111 23.50 65504 96 15138 49867 23.29 65005 97 15878 51155 23.69 67033 98 14295 46763 23.41 61058 99 12663 0 100.00 12663 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 48421 254850 15.97 303271 2 50219 258514 16.27 308733 3 47639 263366 15.32 311005 4 51523 276843 15.69 328366 5 3973 499753 0.79 503726 6 2996 594414 0.50 597410 7 1990 324411 0.61 326401 8 1918 350748 0.54 352666 9 1674 299062 0.56 300736 10 1669 287371 0.58 289040 11 2329 361043 0.64 363372 12 1926 299980 0.64 301906 13 1829 300263 0.61 302092 14 1901 295851 0.64 297752 15 1814 277677 0.65 279491 16 1678 262656 0.63 264334 17 1951 280177 0.69 282128 18 1999 251633 0.79 253632 19 1877 247974 0.75 249851 20 1886 244507 0.77 246393 21 2152 238302 0.89 240454 22 1928 256414 0.75 258342 23 1877 252650 0.74 254527 24 1808 231284 0.78 233092 25 1797 235694 0.76 237491 26 1924 245313 0.78 247237 27 1801 228729 0.78 230530 28 1716 219007 0.78 220723 29 1845 231552 0.79 233397 30 1872 227867 0.81 229739 31 1851 218582 0.84 220433 32 1732 221945 0.77 223677 33 1927 249090 0.77 251017 34 1885 218607 0.85 220492 35 1875 221824 0.84 223699 36 1858 220397 0.84 222255 37 1661 205951 0.80 207612 38 1769 212746 0.82 214515 39 1862 206271 0.89 208133 40 1816 201753 0.89 203569 41 1873 197860 0.94 199733 42 1915 185868 1.02 187783 43 1935 190122 1.01 192057 44 1711 194017 0.87 195728 45 1689 179786 0.93 181475 46 1707 180663 0.94 182370 47 1750 186892 0.93 188642 48 1736 178602 0.96 180338 49 1634 180801 0.90 182435 50 1794 178886 0.99 180680 51 1703 166331 1.01 168034 52 1941 165355 1.16 167296 53 2361 184588 1.26 186949 54 1773 170335 1.03 172108 55 1633 168217 0.96 169850 56 1689 168409 0.99 170098 57 1642 159652 1.02 161294 58 1512 157054 0.95 158566 59 1399 161950 0.86 163349 60 1289 155320 0.82 156609 61 1190 156164 0.76 157354 62 1211 157430 0.76 158641 63 1228 157821 0.77 159049 64 1105 147359 0.74 148464 65 1094 151331 0.72 152425 66 1086 142681 0.76 143767 67 1080 150406 0.71 151486 68 986 147484 0.66 148470 69 1054 146819 0.71 147873 70 1052 144842 0.72 145894 71 1014 145718 0.69 146732 72 1069 137523 0.77 138592 73 974 135662 0.71 136636 74 994 141369 0.70 142363 75 1019 135902 0.74 136921 76 895 129625 0.69 130520 77 991 135880 0.72 136871 78 926 129819 0.71 130745 79 939 128822 0.72 129761 80 956 126746 0.75 127702 81 866 121603 0.71 122469 82 849 121583 0.69 122432 83 904 122631 0.73 123535 84 865 116983 0.73 117848 85 891 126192 0.70 127083 86 854 116846 0.73 117700 87 830 116807 0.71 117637 88 797 111912 0.71 112709 89 863 119289 0.72 120152 90 935 113302 0.82 114237 91 828 115261 0.71 116089 92 837 112759 0.74 113596 93 827 108754 0.75 109581 94 798 107009 0.74 107807 95 836 110032 0.75 110868 96 833 106174 0.78 107007 97 839 103179 0.81 104018 98 644 99330 0.64 99974 99 501 0 100.00 501 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 72481 366547 16.51 439028 2 59967 307356 16.33 367323 3 60810 315747 16.15 376557 4 60769 306032 16.57 366801 5 9048 575879 1.55 584927 6 8959 798199 1.11 807158 7 9751 1050739 0.92 1060490 8 9581 1040072 0.91 1049653 9 10203 979598 1.03 989801 10 9831 1006354 0.97 1016185 11 9814 987019 0.98 996833 12 9563 916541 1.03 926104 13 9532 950112 0.99 959644 14 9465 955512 0.98 964977 15 9266 963618 0.95 972884 16 8921 919161 0.96 928082 17 9370 922089 1.01 931459 18 9359 916355 1.01 925714 19 8497 864521 0.97 873018 20 9334 898949 1.03 908283 21 8868 859342 1.02 868210 22 9081 839474 1.07 848555 23 8668 822550 1.04 831218 24 8356 791042 1.05 799398 25 9013 792852 1.12 801865 26 8417 787506 1.06 795923 27 9040 824088 1.09 833128 28 8536 796406 1.06 804942 29 8480 783589 1.07 792069 30 8751 764472 1.13 773223 31 8310 756588 1.09 764898 32 8016 740152 1.07 748168 33 8588 728031 1.17 736619 34 8241 721542 1.13 729783 35 8871 741018 1.18 749889 36 8096 733872 1.09 741968 37 8115 726922 1.10 735037 38 8347 749291 1.10 757638 39 8192 700195 1.16 708387 40 8131 719984 1.12 728115 41 7916 693802 1.13 701718 42 8040 697169 1.14 705209 43 7951 672773 1.17 680724 44 7626 672946 1.12 680572 45 7951 668909 1.17 676860 46 7587 677101 1.11 684688 47 7304 667167 1.08 674471 48 7542 650720 1.15 658262 49 7166 651728 1.09 658894 50 7148 644220 1.10 651368 51 7278 631110 1.14 638388 52 6880 602461 1.13 609341 53 6682 604329 1.09 611011 54 6682 589450 1.12 596132 55 6747 600116 1.11 606863 56 6510 590455 1.09 596965 57 6392 596320 1.06 602712 58 6187 582892 1.05 589079 59 6126 563957 1.07 570083 60 6032 576611 1.04 582643 61 5822 555810 1.04 561632 62 5638 555219 1.01 560857 63 5666 552331 1.02 557997 64 5585 537863 1.03 543448 65 5313 538015 0.98 543328 66 5559 523139 1.05 528698 67 5311 522898 1.01 528209 68 5435 534548 1.01 539983 69 5494 519001 1.05 524495 70 5190 507422 1.01 512612 71 5290 504188 1.04 509478 72 5241 498635 1.04 503876 73 5102 493553 1.02 498655 74 4850 493649 0.97 498499 75 4960 492126 1.00 497086 76 4873 476689 1.01 481562 77 4851 471093 1.02 475944 78 4945 473318 1.03 478263 79 4854 477290 1.01 482144 80 4846 460443 1.04 465289 81 4861 458862 1.05 463723 82 4879 454798 1.06 459677 83 4590 451258 1.01 455848 84 4757 449640 1.05 454397 85 4492 440929 1.01 445421 86 4334 440239 0.97 444573 87 4570 433934 1.04 438504 88 4394 423240 1.03 427634 89 4455 421291 1.05 425746 90 4339 420550 1.02 424889 91 4145 417018 0.98 421163 92 4182 413078 1.00 417260 93 4050 407931 0.98 411981 94 3968 398898 0.98 402866 95 4137 396101 1.03 400238 96 3952 388671 1.01 392623 97 3834 388592 0.98 392426 98 3300 366723 0.89 370023 99 2416 0 100.00 2416