/gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-120_S32_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-120_S32_L005_R2_001_val_2.fq.gz
Data processed at 10:20 on 2019-02-20
Alignment
Sequence pairs analysed in total
24140505
Paired-end alignments with a unique best hit
14228082
Pairs without alignments under any condition
6858389
Pairs that did not map uniquely
3054034
Genomic sequence context not extractable (edges of chromosomes)
8574
Cytosine Methylation
Total C's analysed
447316441
Methylated C's in CpG context
13759508
Methylated C's in CHG context
2112376
Methylated C's in CHH context
4649713
Methylated C's in Unknown context
152004
Unmethylated C's in CpG context
48876939
Unmethylated C's in CHG context
92508908
Unmethylated C's in CHH context
285408997
Unmethylated C's in Unknown context
2459536
Percentage methylation (CpG context)
22.0%
Percentage methylation (CHG context)
2.2%
Percentage methylation (CHH context)
1.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7210412
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
7009096
original bottom strand
Deduplication
Alignments analysed
14219508
Unique alignments
11806794
Duplicates removed
2412714
Duplicated alignments were found at 1047169 different positions