Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-120_S32_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-120_S32_L005_R2_001_val_2.fq.gz

Data processed at 10:20 on 2019-02-20


Sequence pairs analysed in total 24140505
Paired-end alignments with a unique best hit 14228082
Pairs without alignments under any condition 6858389
Pairs that did not map uniquely 3054034
Genomic sequence context not extractable (edges of chromosomes) 8574

Cytosine Methylation

Total C's analysed 447316441
Methylated C's in CpG context 13759508
Methylated C's in CHG context 2112376
Methylated C's in CHH context 4649713
Methylated C's in Unknown context 152004
Unmethylated C's in CpG context 48876939
Unmethylated C's in CHG context 92508908
Unmethylated C's in CHH context 285408997
Unmethylated C's in Unknown context 2459536
Percentage methylation (CpG context) 22.0%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 1.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 7210412 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7009096 original bottom strand