CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 210523 404380 34.24 614903 2 195985 435941 31.01 631926 3 180634 387136 31.81 567770 4 186606 300956 38.27 487562 5 178123 257894 40.85 436017 6 174689 218055 44.48 392744 7 189765 213176 47.09 402941 8 90593 249826 26.61 340419 9 81952 228395 26.41 310347 10 83454 217839 27.70 301293 11 87743 224271 28.12 312014 12 84710 228099 27.08 312809 13 82537 231497 26.28 314034 14 77306 231314 25.05 308620 15 74622 232792 24.27 307414 16 68723 229124 23.07 297847 17 64198 223428 22.32 287626 18 65894 228239 22.40 294133 19 65494 229994 22.16 295488 20 66003 232785 22.09 298788 21 66721 235732 22.06 302453 22 64808 233702 21.71 298510 23 64223 230535 21.79 294758 24 63657 230682 21.63 294339 25 61887 229320 21.25 291207 26 61800 226010 21.47 287810 27 61884 233447 20.95 295331 28 63503 231890 21.50 295393 29 61898 232984 20.99 294882 30 60835 230599 20.87 291434 31 62347 227438 21.51 289785 32 60699 223522 21.36 284221 33 61738 226237 21.44 287975 34 62962 225668 21.81 288630 35 61552 224886 21.49 286438 36 60426 227424 20.99 287850 37 58886 221420 21.01 280306 38 58936 221039 21.05 279975 39 60409 224463 21.21 284872 40 60134 221382 21.36 281516 41 60010 224089 21.12 284099 42 61480 228359 21.21 289839 43 61018 227904 21.12 288922 44 60500 224361 21.24 284861 45 60912 226525 21.19 287437 46 61824 227649 21.36 289473 47 60749 222715 21.43 283464 48 60231 222764 21.28 282995 49 62111 223486 21.75 285597 50 60067 227806 20.87 287873 51 60615 225321 21.20 285936 52 61171 232165 20.85 293336 53 59777 223612 21.09 283389 54 59130 221258 21.09 280388 55 58570 217170 21.24 275740 56 58775 215330 21.44 274105 57 59276 218648 21.33 277924 58 59941 219039 21.49 278980 59 60787 217881 21.81 278668 60 58810 220624 21.05 279434 61 60280 217291 21.72 277571 62 58723 220142 21.06 278865 63 57899 215828 21.15 273727 64 57547 215781 21.05 273328 65 58447 212790 21.55 271237 66 59227 214408 21.64 273635 67 58227 210859 21.64 269086 68 57497 210414 21.46 267911 69 56465 208876 21.28 265341 70 56325 207928 21.31 264253 71 55245 206461 21.11 261706 72 54857 205447 21.07 260304 73 54800 202787 21.27 257587 74 55065 201460 21.47 256525 75 52806 201545 20.76 254351 76 52889 198830 21.01 251719 77 53323 199462 21.09 252785 78 53356 199584 21.09 252940 79 52215 196985 20.95 249200 80 51695 196431 20.83 248126 81 50974 194797 20.74 245771 82 49869 192949 20.54 242818 83 50690 194388 20.68 245078 84 50323 194504 20.55 244827 85 49806 191393 20.65 241199 86 49255 189052 20.67 238307 87 48051 188536 20.31 236587 88 48407 187715 20.50 236122 89 47399 185242 20.37 232641 90 47447 185860 20.34 233307 91 47114 183100 20.47 230214 92 46181 182356 20.21 228537 93 46274 181827 20.29 228101 94 46184 181172 20.31 227356 95 45319 178109 20.28 223428 96 45442 180768 20.09 226210 97 44654 172970 20.52 217624 98 41535 163405 20.27 204940 99 32702 129220 20.20 161922 100 42212 163432 20.53 205644 101 38356 163602 18.99 201958 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 350232 418895 45.54 769127 2 206981 379011 35.32 585992 3 77415 375780 17.08 453195 4 34182 387648 8.10 421830 5 20570 357387 5.44 377957 6 16707 343121 4.64 359828 7 14211 438743 3.14 452954 8 6105 474515 1.27 480620 9 5267 441472 1.18 446739 10 5342 417470 1.26 422812 11 5766 420445 1.35 426211 12 5337 420264 1.25 425601 13 4736 404002 1.16 408738 14 4429 402386 1.09 406815 15 4294 413225 1.03 417519 16 3815 412725 0.92 416540 17 3855 407628 0.94 411483 18 4020 407606 0.98 411626 19 3418 407362 0.83 410780 20 3493 427809 0.81 431302 21 3507 434334 0.80 437841 22 3588 429613 0.83 433201 23 3738 433714 0.85 437452 24 3553 437802 0.81 441355 25 3421 424763 0.80 428184 26 4056 428086 0.94 432142 27 3546 434193 0.81 437739 28 3465 431159 0.80 434624 29 3835 435585 0.87 439420 30 3555 442417 0.80 445972 31 3392 431482 0.78 434874 32 3366 434210 0.77 437576 33 3438 437594 0.78 441032 34 3377 430209 0.78 433586 35 3652 431163 0.84 434815 36 3507 432289 0.80 435796 37 3420 423256 0.80 426676 38 3462 428684 0.80 432146 39 3440 427030 0.80 430470 40 3376 426040 0.79 429416 41 3302 425103 0.77 428405 42 3386 428321 0.78 431707 43 3320 422453 0.78 425773 44 3362 429352 0.78 432714 45 3440 429355 0.79 432795 46 3353 424441 0.78 427794 47 3483 425921 0.81 429404 48 3336 433399 0.76 436735 49 3345 424132 0.78 427477 50 3560 424432 0.83 427992 51 3462 429131 0.80 432593 52 3494 428115 0.81 431609 53 3535 427120 0.82 430655 54 3678 432593 0.84 436271 55 3584 425986 0.83 429570 56 3600 430962 0.83 434562 57 3668 430105 0.85 433773 58 4278 425195 1.00 429473 59 3960 429374 0.91 433334 60 3984 430703 0.92 434687 61 4123 426022 0.96 430145 62 4236 427863 0.98 432099 63 4200 424583 0.98 428783 64 4210 420938 0.99 425148 65 4559 420702 1.07 425261 66 4318 415379 1.03 419697 67 4233 406421 1.03 410654 68 4478 410839 1.08 415317 69 4278 412241 1.03 416519 70 4069 406307 0.99 410376 71 4142 404437 1.01 408579 72 4037 404430 0.99 408467 73 4181 399528 1.04 403709 74 4157 395498 1.04 399655 75 4161 398215 1.03 402376 76 4035 389758 1.02 393793 77 4266 392730 1.07 396996 78 3985 384694 1.03 388679 79 4099 378833 1.07 382932 80 4008 378399 1.05 382407 81 4008 375460 1.06 379468 82 3997 369765 1.07 373762 83 3985 375952 1.05 379937 84 4075 374884 1.08 378959 85 4032 368683 1.08 372715 86 4094 370389 1.09 374483 87 4014 369801 1.07 373815 88 4058 363605 1.10 367663 89 4145 361626 1.13 365771 90 4020 361662 1.10 365682 91 4124 356249 1.14 360373 92 4381 358776 1.21 363157 93 4399 355502 1.22 359901 94 4365 348290 1.24 352655 95 4300 348822 1.22 353122 96 4418 346065 1.26 350483 97 4249 317132 1.32 321381 98 3897 293807 1.31 297704 99 2573 191512 1.33 194085 100 2892 195100 1.46 197992 101 5441 313936 1.70 319377 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 349058 484015 41.90 833073 2 163406 525281 23.73 688687 3 73158 648138 10.14 721296 4 58810 701063 7.74 759873 5 51281 837854 5.77 889135 6 41755 919305 4.34 961060 7 36571 1178920 3.01 1215491 8 22120 1272190 1.71 1294310 9 17806 1153906 1.52 1171712 10 17526 1119872 1.54 1137398 11 19520 1125930 1.70 1145450 12 17673 1145520 1.52 1163193 13 19538 1171630 1.64 1191168 14 19866 1203786 1.62 1223652 15 18298 1238485 1.46 1256783 16 17387 1270320 1.35 1287707 17 18987 1283603 1.46 1302590 18 17294 1332214 1.28 1349508 19 17452 1364156 1.26 1381608 20 19354 1410072 1.35 1429426 21 17420 1412425 1.22 1429845 22 18365 1418883 1.28 1437248 23 19617 1421059 1.36 1440676 24 17495 1425081 1.21 1442576 25 18042 1431289 1.24 1449331 26 19482 1445269 1.33 1464751 27 17667 1452177 1.20 1469844 28 17721 1455337 1.20 1473058 29 19685 1450349 1.34 1470034 30 17499 1437637 1.20 1455136 31 17436 1418795 1.21 1436231 32 18473 1426299 1.28 1444772 33 17333 1425016 1.20 1442349 34 18720 1436027 1.29 1454747 35 19077 1422397 1.32 1441474 36 17456 1437858 1.20 1455314 37 17369 1430351 1.20 1447720 38 19526 1434438 1.34 1453964 39 17282 1424942 1.20 1442224 40 17724 1428492 1.23 1446216 41 19443 1436697 1.34 1456140 42 17950 1444913 1.23 1462863 43 18821 1429748 1.30 1448569 44 19064 1440002 1.31 1459066 45 18083 1431427 1.25 1449510 46 17751 1437930 1.22 1455681 47 18837 1433144 1.30 1451981 48 17060 1435735 1.17 1452795 49 17315 1419772 1.20 1437087 50 18463 1419154 1.28 1437617 51 17059 1410040 1.20 1427099 52 17998 1404256 1.27 1422254 53 18744 1396968 1.32 1415712 54 17262 1401732 1.22 1418994 55 18105 1396609 1.28 1414714 56 18947 1396814 1.34 1415761 57 17107 1415841 1.19 1432948 58 19291 1403011 1.36 1422302 59 19290 1414007 1.35 1433297 60 17305 1397849 1.22 1415154 61 18087 1389111 1.29 1407198 62 18658 1380989 1.33 1399647 63 17038 1371989 1.23 1389027 64 18392 1366419 1.33 1384811 65 18485 1365073 1.34 1383558 66 17070 1359010 1.24 1376080 67 17371 1351709 1.27 1369080 68 18118 1347841 1.33 1365959 69 16818 1342520 1.24 1359338 70 17076 1332560 1.27 1349636 71 18028 1330246 1.34 1348274 72 16818 1329020 1.25 1345838 73 17830 1313330 1.34 1331160 74 18146 1312306 1.36 1330452 75 16622 1304687 1.26 1321309 76 16756 1301935 1.27 1318691 77 17872 1290976 1.37 1308848 78 15720 1283228 1.21 1298948 79 16261 1276090 1.26 1292351 80 17393 1269380 1.35 1286773 81 15971 1255303 1.26 1271274 82 16712 1246703 1.32 1263415 83 17275 1249813 1.36 1267088 84 16249 1235262 1.30 1251511 85 15693 1224199 1.27 1239892 86 16777 1213599 1.36 1230376 87 15333 1208487 1.25 1223820 88 15263 1201941 1.25 1217204 89 16512 1192210 1.37 1208722 90 15257 1190015 1.27 1205272 91 15600 1177645 1.31 1193245 92 16103 1177554 1.35 1193657 93 15222 1165064 1.29 1180286 94 15295 1158293 1.30 1173588 95 16459 1146533 1.42 1162992 96 14908 1125606 1.31 1140514 97 14836 1098659 1.33 1113495 98 15083 1024724 1.45 1039807 99 9533 713142 1.32 722675 100 10417 639459 1.60 649876 101 14658 1033759 1.40 1048417 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 148276 228924 39.31 377200 2 131623 206887 38.88 338510 3 143008 232108 38.12 375116 4 139044 264066 34.49 403110 5 57386 330309 14.80 387695 6 33134 178293 15.67 211427 7 30025 187005 13.83 217030 8 32002 176409 15.36 208411 9 28154 156953 15.21 185107 10 31646 172893 15.47 204539 11 33663 168203 16.68 201866 12 33549 162747 17.09 196296 13 33597 159813 17.37 193410 14 36173 163308 18.13 199481 15 34882 151609 18.70 186491 16 33704 146589 18.69 180293 17 39514 159582 19.85 199096 18 38979 154485 20.15 193464 19 37329 148533 20.08 185862 20 35457 145919 19.55 181376 21 36965 144996 20.31 181961 22 35976 146651 19.70 182627 23 34026 140906 19.45 174932 24 33224 134198 19.84 167422 25 36298 141859 20.37 178157 26 33460 135444 19.81 168904 27 35520 136805 20.61 172325 28 33587 132184 20.26 165771 29 34531 136728 20.16 171259 30 33955 128455 20.91 162410 31 32251 129445 19.95 161696 32 31244 123633 20.17 154877 33 34175 126452 21.28 160627 34 33060 130115 20.26 163175 35 38748 137717 21.96 176465 36 33809 124154 21.40 157963 37 33920 126747 21.11 160667 38 31293 123406 20.23 154699 39 32301 121008 21.07 153309 40 33730 122593 21.58 156323 41 31176 119273 20.72 150449 42 31550 122239 20.52 153789 43 31563 119430 20.90 150993 44 29796 115998 20.44 145794 45 34561 124118 21.78 158679 46 29471 110810 21.01 140281 47 29957 112545 21.02 142502 48 29490 110588 21.05 140078 49 28684 114098 20.09 142782 50 27544 105766 20.66 133310 51 27598 103414 21.07 131012 52 27848 106484 20.73 134332 53 28101 104276 21.23 132377 54 27296 103933 20.80 131229 55 27691 102270 21.31 129961 56 25676 101805 20.14 127481 57 26477 99838 20.96 126315 58 26148 99171 20.87 125319 59 25390 94442 21.19 119832 60 26026 97028 21.15 123054 61 23520 92922 20.20 116442 62 23634 91075 20.60 114709 63 24952 90427 21.63 115379 64 23869 88812 21.18 112681 65 22999 84442 21.41 107441 66 24048 88447 21.38 112495 67 22790 89064 20.37 111854 68 23643 91355 20.56 114998 69 22076 84013 20.81 106089 70 21701 84007 20.53 105708 71 22245 80358 21.68 102603 72 21136 78890 21.13 100026 73 21289 80987 20.82 102276 74 19829 78576 20.15 98405 75 19965 77370 20.51 97335 76 20139 76080 20.93 96219 77 19912 74930 20.99 94842 78 19954 75607 20.88 95561 79 19209 74375 20.53 93584 80 18793 72262 20.64 91055 81 18524 71553 20.56 90077 82 18653 71551 20.68 90204 83 18654 69293 21.21 87947 84 19812 74060 21.11 93872 85 18129 69467 20.70 87596 86 17538 68312 20.43 85850 87 17527 66609 20.83 84136 88 17639 66702 20.91 84341 89 18226 66957 21.40 85183 90 17789 66754 21.04 84543 91 17272 65200 20.94 82472 92 16589 64235 20.52 80824 93 16908 64104 20.87 81012 94 16870 63094 21.10 79964 95 16908 62964 21.17 79872 96 16914 63118 21.13 80032 97 17431 64766 21.21 82197 98 15752 58393 21.24 74145 99 13660 0 100.00 13660 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 53908 284168 15.95 338076 2 56046 292550 16.08 348596 3 53375 298240 15.18 351615 4 59350 314285 15.88 373635 5 4618 571890 0.80 576508 6 3453 676212 0.51 679665 7 2229 369700 0.60 371929 8 2270 394926 0.57 397196 9 1902 338310 0.56 340212 10 1997 323429 0.61 325426 11 2616 408895 0.64 411511 12 2111 338828 0.62 340939 13 2103 338791 0.62 340894 14 2197 333771 0.65 335968 15 2184 314986 0.69 317170 16 1858 296819 0.62 298677 17 2283 317220 0.71 319503 18 2297 284946 0.80 287243 19 2006 279080 0.71 281086 20 2050 278952 0.73 281002 21 2410 270617 0.88 273027 22 2224 289230 0.76 291454 23 2181 284343 0.76 286524 24 2075 262227 0.79 264302 25 2072 266490 0.77 268562 26 2162 278031 0.77 280193 27 2019 258069 0.78 260088 28 1889 249277 0.75 251166 29 2106 264577 0.79 266683 30 2128 259340 0.81 261468 31 2034 248277 0.81 250311 32 1930 253259 0.76 255189 33 2268 286179 0.79 288447 34 2016 249520 0.80 251536 35 2071 253478 0.81 255549 36 2083 252576 0.82 254659 37 1876 234991 0.79 236867 38 1994 243793 0.81 245787 39 2004 234955 0.85 236959 40 2010 230950 0.86 232960 41 2035 226121 0.89 228156 42 2023 213211 0.94 215234 43 2024 219187 0.91 221211 44 1914 221220 0.86 223134 45 1883 205530 0.91 207413 46 1776 207669 0.85 209445 47 1953 213209 0.91 215162 48 1862 205774 0.90 207636 49 1898 209829 0.90 211727 50 2007 206758 0.96 208765 51 1813 192190 0.93 194003 52 2031 189628 1.06 191659 53 2322 211666 1.09 213988 54 1908 195519 0.97 197427 55 1843 192895 0.95 194738 56 1813 193350 0.93 195163 57 1937 183769 1.04 185706 58 1701 182404 0.92 184105 59 1615 186192 0.86 187807 60 1572 180656 0.86 182228 61 1298 179696 0.72 180994 62 1364 182681 0.74 184045 63 1416 183581 0.77 184997 64 1160 169939 0.68 171099 65 1311 174760 0.74 176071 66 1153 163857 0.70 165010 67 1300 172793 0.75 174093 68 1231 170991 0.71 172222 69 1201 169395 0.70 170596 70 1168 167955 0.69 169123 71 1183 170295 0.69 171478 72 1154 159153 0.72 160307 73 1090 157194 0.69 158284 74 1175 163894 0.71 165069 75 1124 157249 0.71 158373 76 988 149791 0.66 150779 77 1117 156470 0.71 157587 78 1039 150140 0.69 151179 79 1082 149241 0.72 150323 80 1050 146446 0.71 147496 81 1014 141068 0.71 142082 82 985 141447 0.69 142432 83 1048 142523 0.73 143571 84 967 136983 0.70 137950 85 1065 148139 0.71 149204 86 1043 136929 0.76 137972 87 999 136373 0.73 137372 88 962 130592 0.73 131554 89 1082 139103 0.77 140185 90 1067 133515 0.79 134582 91 968 135230 0.71 136198 92 998 132198 0.75 133196 93 946 126888 0.74 127834 94 933 125114 0.74 126047 95 968 128342 0.75 129310 96 980 123662 0.79 124642 97 911 120652 0.75 121563 98 730 116823 0.62 117553 99 621 0 100.00 621 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 80823 404989 16.64 485812 2 66919 340394 16.43 407313 3 67132 349272 16.12 416404 4 67704 340901 16.57 408605 5 9670 644706 1.48 654376 6 9786 888561 1.09 898347 7 10586 1177875 0.89 1188461 8 10621 1166592 0.90 1177213 9 11149 1095667 1.01 1106816 10 10727 1128419 0.94 1139146 11 10862 1107518 0.97 1118380 12 10723 1029562 1.03 1040285 13 10217 1066387 0.95 1076604 14 10506 1075533 0.97 1086039 15 10386 1084675 0.95 1095061 16 9576 1034556 0.92 1044132 17 10313 1041109 0.98 1051422 18 10365 1037729 0.99 1048094 19 9363 977378 0.95 986741 20 10296 1017065 1.00 1027361 21 9774 973881 0.99 983655 22 9958 949316 1.04 959274 23 9515 932106 1.01 941621 24 9222 896833 1.02 906055 25 9823 898701 1.08 908524 26 9272 893187 1.03 902459 27 10026 938694 1.06 948720 28 9223 904944 1.01 914167 29 9315 891094 1.03 900409 30 9659 870351 1.10 880010 31 8976 859358 1.03 868334 32 8870 840030 1.04 848900 33 9404 825691 1.13 835095 34 8947 822263 1.08 831210 35 9491 845195 1.11 854686 36 8933 835826 1.06 844759 37 8718 827186 1.04 835904 38 9117 852694 1.06 861811 39 9150 796545 1.14 805695 40 8746 824204 1.05 832950 41 8784 790520 1.10 799304 42 8955 799012 1.11 807967 43 8884 767753 1.14 776637 44 8172 766920 1.05 775092 45 8702 765055 1.12 773757 46 8273 773252 1.06 781525 47 7873 760031 1.03 767904 48 8404 742362 1.12 750766 49 7946 745691 1.05 753637 50 7963 737305 1.07 745268 51 8196 724240 1.12 732436 52 7504 690325 1.08 697829 53 7381 692075 1.06 699456 54 7367 676704 1.08 684071 55 7344 690275 1.05 697619 56 7185 676123 1.05 683308 57 7119 685699 1.03 692818 58 6761 669068 1.00 675829 59 6848 649402 1.04 656250 60 6835 661234 1.02 668069 61 6426 636974 1.00 643400 62 6400 635221 1.00 641621 63 6272 632301 0.98 638573 64 6152 619509 0.98 625661 65 5829 621243 0.93 627072 66 6126 602888 1.01 609014 67 5808 602406 0.95 608214 68 6087 617251 0.98 623338 69 6180 599922 1.02 606102 70 5623 586754 0.95 592377 71 5850 582673 0.99 588523 72 5944 575178 1.02 581122 73 5763 569773 1.00 575536 74 5581 568232 0.97 573813 75 5486 566004 0.96 571490 76 5230 548903 0.94 554133 77 5516 543839 1.00 549355 78 5592 546658 1.01 552250 79 5486 550676 0.99 556162 80 5402 533811 1.00 539213 81 5526 530950 1.03 536476 82 5331 525426 1.00 530757 83 4940 522753 0.94 527693 84 5402 520838 1.03 526240 85 4965 512022 0.96 516987 86 4890 509050 0.95 513940 87 5070 501125 1.00 506195 88 4762 490915 0.96 495677 89 4775 487040 0.97 491815 90 4905 486059 1.00 490964 91 4735 482872 0.97 487607 92 4566 475795 0.95 480361 93 4576 472909 0.96 477485 94 4428 464119 0.95 468547 95 4507 458484 0.97 462991 96 4403 452114 0.96 456517 97 4104 448141 0.91 452245 98 3636 426574 0.85 430210 99 2628 0 100.00 2628