/gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-119_S31_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-119_S31_L005_R2_001_val_2.fq.gz
Data processed at 10:20 on 2019-02-20
Alignment
Sequence pairs analysed in total
28905983
Paired-end alignments with a unique best hit
15861749
Pairs without alignments under any condition
9063761
Pairs that did not map uniquely
3980473
Genomic sequence context not extractable (edges of chromosomes)
6428
Cytosine Methylation
Total C's analysed
504938376
Methylated C's in CpG context
14420712
Methylated C's in CHG context
2282537
Methylated C's in CHH context
5098952
Methylated C's in Unknown context
163420
Unmethylated C's in CpG context
60076572
Unmethylated C's in CHG context
104483007
Unmethylated C's in CHH context
318576596
Unmethylated C's in Unknown context
2841606
Percentage methylation (CpG context)
19.4%
Percentage methylation (CHG context)
2.1%
Percentage methylation (CHH context)
1.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7949757
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
7905564
original bottom strand
Deduplication
Alignments analysed
15855321
Unique alignments
13039685
Duplicates removed
2815636
Duplicated alignments were found at 1216468 different positions