Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-119_S31_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-119_S31_L005_R2_001_val_2.fq.gz

Data processed at 10:20 on 2019-02-20


Sequence pairs analysed in total 28905983
Paired-end alignments with a unique best hit 15861749
Pairs without alignments under any condition 9063761
Pairs that did not map uniquely 3980473
Genomic sequence context not extractable (edges of chromosomes) 6428

Cytosine Methylation

Total C's analysed 504938376
Methylated C's in CpG context 14420712
Methylated C's in CHG context 2282537
Methylated C's in CHH context 5098952
Methylated C's in Unknown context 163420
Unmethylated C's in CpG context 60076572
Unmethylated C's in CHG context 104483007
Unmethylated C's in CHH context 318576596
Unmethylated C's in Unknown context 2841606
Percentage methylation (CpG context) 19.4%
Percentage methylation (CHG context) 2.1%
Percentage methylation (CHH context) 1.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 7949757 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7905564 original bottom strand