CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 244863 387021 38.75 631884 2 222360 407187 35.32 629547 3 194106 359112 35.09 553218 4 188217 272149 40.88 460366 5 177510 225538 44.04 403048 6 175313 194887 47.36 370200 7 193321 188066 50.69 381387 8 91647 216700 29.72 308347 9 82152 196635 29.47 278787 10 82590 187583 30.57 270173 11 85308 191948 30.77 277256 12 81418 196880 29.26 278298 13 80552 203067 28.40 283619 14 75149 200586 27.25 275735 15 72378 203707 26.22 276085 16 67206 200147 25.14 267353 17 63302 194284 24.58 257586 18 65181 197336 24.83 262517 19 64699 200239 24.42 264938 20 65537 202577 24.44 268114 21 66688 205357 24.51 272045 22 64649 202692 24.18 267341 23 63960 200010 24.23 263970 24 62886 200051 23.92 262937 25 61168 199152 23.50 260320 26 61719 195778 23.97 257497 27 61066 200966 23.30 262032 28 64225 200267 24.28 264492 29 61968 206270 23.10 268238 30 60990 202352 23.16 263342 31 61682 197916 23.76 259598 32 60521 193999 23.78 254520 33 60787 195928 23.68 256715 34 61233 195175 23.88 256408 35 60356 193982 23.73 254338 36 59762 197615 23.22 257377 37 58748 193609 23.28 252357 38 57999 193869 23.03 251868 39 60210 194642 23.63 254852 40 61090 193104 24.03 254194 41 60730 193995 23.84 254725 42 61229 196802 23.73 258031 43 60636 196001 23.63 256637 44 60497 194788 23.70 255285 45 61003 194281 23.90 255284 46 61890 195811 24.02 257701 47 61662 192862 24.23 254524 48 61282 193722 24.03 255004 49 62204 193523 24.32 255727 50 59893 197360 23.28 257253 51 60754 196629 23.60 257383 52 60320 203713 22.85 264033 53 59192 194469 23.34 253661 54 58155 193241 23.13 251396 55 57617 189176 23.35 246793 56 57437 185895 23.60 243332 57 58247 189589 23.50 247836 58 59264 189394 23.83 248658 59 59709 189271 23.98 248980 60 58127 191317 23.30 249444 61 59208 188532 23.90 247740 62 58237 190898 23.38 249135 63 57091 188302 23.27 245393 64 56865 188246 23.20 245111 65 57257 183931 23.74 241188 66 57703 184995 23.78 242698 67 57013 182056 23.85 239069 68 56070 181733 23.58 237803 69 55003 179620 23.44 234623 70 55024 179221 23.49 234245 71 54321 177835 23.40 232156 72 54615 176959 23.58 231574 73 53269 175283 23.31 228552 74 53311 174005 23.45 227316 75 51371 173620 22.83 224991 76 52014 171123 23.31 223137 77 52191 170853 23.40 223044 78 51566 171152 23.15 222718 79 51074 169494 23.16 220568 80 50087 168991 22.86 219078 81 49695 167376 22.89 217071 82 48317 165207 22.63 213524 83 49768 166126 23.05 215894 84 49308 166531 22.84 215839 85 49093 163851 23.05 212944 86 47946 161187 22.93 209133 87 47004 161149 22.58 208153 88 47088 160853 22.64 207941 89 45991 157537 22.60 203528 90 46595 157883 22.79 204478 91 45752 156173 22.66 201925 92 45086 155076 22.52 200162 93 44761 155148 22.39 199909 94 45000 152524 22.78 197524 95 44435 152460 22.57 196895 96 44846 154297 22.52 199143 97 42684 148451 22.33 191135 98 39996 139900 22.23 179896 99 31454 110036 22.23 141490 100 41357 139326 22.89 180683 101 37865 138285 21.50 176150 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 340591 397137 46.17 737728 2 204617 355685 36.52 560302 3 83413 350317 19.23 433730 4 37094 360300 9.33 397394 5 21863 335025 6.13 356888 6 17720 332307 5.06 350027 7 13415 411848 3.15 425263 8 5810 444129 1.29 449939 9 4827 410349 1.16 415176 10 4838 391292 1.22 396130 11 5106 392684 1.28 397790 12 4872 398495 1.21 403367 13 4267 378223 1.12 382490 14 3848 377908 1.01 381756 15 3786 386528 0.97 390314 16 3614 387232 0.92 390846 17 3512 382704 0.91 386216 18 3687 384061 0.95 387748 19 3175 382158 0.82 385333 20 3228 401782 0.80 405010 21 3254 409344 0.79 412598 22 3368 402895 0.83 406263 23 3420 406519 0.83 409939 24 3177 412931 0.76 416108 25 3298 398158 0.82 401456 26 3610 401579 0.89 405189 27 3204 407066 0.78 410270 28 3058 405676 0.75 408734 29 3406 409220 0.83 412626 30 3192 414993 0.76 418185 31 3119 405719 0.76 408838 32 3161 408323 0.77 411484 33 3167 408113 0.77 411280 34 3066 399931 0.76 402997 35 3315 404946 0.81 408261 36 3258 407916 0.79 411174 37 3143 396711 0.79 399854 38 3223 401893 0.80 405116 39 3182 401659 0.79 404841 40 3191 397596 0.80 400787 41 3128 397987 0.78 401115 42 3042 401442 0.75 404484 43 3060 397116 0.76 400176 44 3063 403777 0.75 406840 45 3133 402557 0.77 405690 46 3151 398268 0.78 401419 47 3195 398774 0.79 401969 48 3055 406687 0.75 409742 49 3073 398158 0.77 401231 50 3310 399665 0.82 402975 51 3226 403635 0.79 406861 52 3365 401916 0.83 405281 53 3231 400231 0.80 403462 54 3421 406810 0.83 410231 55 3225 398024 0.80 401249 56 3321 404181 0.81 407502 57 3425 403967 0.84 407392 58 4127 399442 1.02 403569 59 3677 403266 0.90 406943 60 3755 406958 0.91 410713 61 3854 401554 0.95 405408 62 3989 403589 0.98 407578 63 3887 400083 0.96 403970 64 4100 398931 1.02 403031 65 4316 394270 1.08 398586 66 4013 391183 1.02 395196 67 3995 380271 1.04 384266 68 4236 385143 1.09 389379 69 3946 385187 1.01 389133 70 3909 379413 1.02 383322 71 3930 377751 1.03 381681 72 3856 378454 1.01 382310 73 3905 371616 1.04 375521 74 3961 369724 1.06 373685 75 3948 371402 1.05 375350 76 3807 362413 1.04 366220 77 3923 363819 1.07 367742 78 3756 361683 1.03 365439 79 3825 353300 1.07 357125 80 3701 352082 1.04 355783 81 3767 349141 1.07 352908 82 3675 344414 1.06 348089 83 3819 349582 1.08 353401 84 3709 350134 1.05 353843 85 3913 341667 1.13 345580 86 3900 346210 1.11 350110 87 3814 345064 1.09 348878 88 3923 336813 1.15 340736 89 3953 334855 1.17 338808 90 3894 337367 1.14 341261 91 3986 329902 1.19 333888 92 3945 331223 1.18 335168 93 4153 327770 1.25 331923 94 4181 322338 1.28 326519 95 3994 322038 1.23 326032 96 4346 320065 1.34 324411 97 4145 292246 1.40 296391 98 3760 270003 1.37 273763 99 2488 172848 1.42 175336 100 2732 177918 1.51 180650 101 5106 287510 1.74 292616 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 310857 461410 40.25 772267 2 146440 481852 23.31 628292 3 67543 608878 9.99 676421 4 52850 667394 7.34 720244 5 46786 791504 5.58 838290 6 37699 876378 4.12 914077 7 33484 1109828 2.93 1143312 8 20519 1192701 1.69 1213220 9 16386 1090225 1.48 1106611 10 16216 1070318 1.49 1086534 11 18329 1069510 1.68 1087839 12 16345 1094046 1.47 1110391 13 17613 1117814 1.55 1135427 14 18257 1150265 1.56 1168522 15 16488 1180120 1.38 1196608 16 15834 1208296 1.29 1224130 17 17317 1213673 1.41 1230990 18 15575 1261207 1.22 1276782 19 16152 1288500 1.24 1304652 20 17768 1328471 1.32 1346239 21 15894 1334613 1.18 1350507 22 16813 1337017 1.24 1353830 23 18265 1339611 1.35 1357876 24 15794 1339575 1.17 1355369 25 16827 1350901 1.23 1367728 26 17707 1363575 1.28 1381282 27 15988 1368486 1.15 1384474 28 16042 1368787 1.16 1384829 29 18063 1364265 1.31 1382328 30 16222 1352404 1.19 1368626 31 15993 1332326 1.19 1348319 32 16943 1342809 1.25 1359752 33 15580 1340383 1.15 1355963 34 17232 1349670 1.26 1366902 35 17667 1340335 1.30 1358002 36 16104 1352779 1.18 1368883 37 15965 1345422 1.17 1361387 38 17741 1351564 1.30 1369305 39 15840 1345488 1.16 1361328 40 16075 1349366 1.18 1365441 41 17916 1356341 1.30 1374257 42 16494 1367241 1.19 1383735 43 16874 1351426 1.23 1368300 44 17661 1360226 1.28 1377887 45 16483 1350592 1.21 1367075 46 16362 1355404 1.19 1371766 47 17429 1350690 1.27 1368119 48 15562 1354130 1.14 1369692 49 16050 1335267 1.19 1351317 50 17121 1332033 1.27 1349154 51 15647 1320886 1.17 1336533 52 16326 1320216 1.22 1336542 53 17254 1312976 1.30 1330230 54 15870 1316003 1.19 1331873 55 16140 1318289 1.21 1334429 56 17237 1314662 1.29 1331899 57 16049 1333452 1.19 1349501 58 17461 1319563 1.31 1337024 59 17488 1332240 1.30 1349728 60 15843 1312551 1.19 1328394 61 16771 1309412 1.26 1326183 62 17186 1298039 1.31 1315225 63 15903 1285834 1.22 1301737 64 16838 1278831 1.30 1295669 65 17031 1280442 1.31 1297473 66 15847 1271848 1.23 1287695 67 15927 1264584 1.24 1280511 68 16929 1258966 1.33 1275895 69 15569 1251142 1.23 1266711 70 15604 1248844 1.23 1264448 71 16859 1243624 1.34 1260483 72 15607 1236987 1.25 1252594 73 16558 1221313 1.34 1237871 74 16579 1221175 1.34 1237754 75 15353 1214723 1.25 1230076 76 15328 1207938 1.25 1223266 77 16437 1200325 1.35 1216762 78 14581 1190279 1.21 1204860 79 14939 1182232 1.25 1197171 80 16201 1176824 1.36 1193025 81 14624 1164127 1.24 1178751 82 15262 1153406 1.31 1168668 83 16033 1155214 1.37 1171247 84 14638 1142163 1.27 1156801 85 14448 1131150 1.26 1145598 86 15263 1124664 1.34 1139927 87 14064 1117300 1.24 1131364 88 14087 1113747 1.25 1127834 89 15398 1102959 1.38 1118357 90 13808 1098539 1.24 1112347 91 14492 1085488 1.32 1099980 92 15158 1085519 1.38 1100677 93 13986 1073565 1.29 1087551 94 14249 1066559 1.32 1080808 95 15223 1054438 1.42 1069661 96 13648 1035542 1.30 1049190 97 13858 1008995 1.35 1022853 98 13954 939087 1.46 953041 99 8987 652488 1.36 661475 100 9688 584855 1.63 594543 101 13557 943390 1.42 956947 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 138272 191573 41.92 329845 2 122550 173185 41.44 295735 3 133418 194840 40.64 328258 4 125590 218638 36.48 344228 5 53986 270327 16.65 324313 6 30806 146757 17.35 177563 7 28703 158750 15.31 187453 8 30648 147159 17.24 177807 9 27594 131680 17.32 159274 10 30745 144425 17.55 175170 11 32276 141267 18.60 173543 12 31894 136988 18.89 168882 13 32728 133945 19.64 166673 14 33255 135647 19.69 168902 15 31958 125801 20.26 157759 16 31972 122515 20.70 154487 17 38185 134443 22.12 172628 18 36918 127008 22.52 163926 19 34523 122169 22.03 156692 20 32927 120999 21.39 153926 21 34544 119493 22.43 154037 22 33939 121437 21.84 155376 23 32389 116620 21.74 149009 24 30797 111393 21.66 142190 25 33567 118804 22.03 152371 26 31991 113738 21.95 145729 27 33952 114580 22.86 148532 28 32434 111498 22.53 143932 29 32929 114367 22.36 147296 30 31213 106629 22.64 137842 31 30212 107599 21.92 137811 32 29532 102175 22.42 131707 33 31481 104399 23.17 135880 34 30920 106708 22.47 137628 35 37197 111622 24.99 148819 36 32129 101781 23.99 133910 37 32314 104688 23.59 137002 38 29409 101455 22.47 130864 39 30305 99661 23.32 129966 40 31739 101562 23.81 133301 41 29059 98355 22.81 127414 42 29151 99798 22.61 128949 43 29742 97845 23.31 127587 44 27860 95343 22.61 123203 45 32880 100342 24.68 133222 46 27376 90635 23.20 118011 47 27741 92155 23.14 119896 48 26796 90597 22.83 117393 49 26529 94220 21.97 120749 50 25486 86265 22.81 111751 51 26110 84404 23.63 110514 52 26060 87165 23.02 113225 53 26085 84525 23.58 110610 54 25181 84600 22.94 109781 55 25371 83273 23.35 108644 56 24076 82754 22.54 106830 57 24462 78936 23.66 103398 58 23863 80023 22.97 103886 59 23234 76464 23.30 99698 60 23968 77689 23.58 101657 61 21250 74924 22.10 96174 62 21694 73609 22.76 95303 63 22614 72651 23.74 95265 64 22170 72499 23.42 94669 65 21153 67990 23.73 89143 66 22120 71599 23.60 93719 67 20541 70369 22.59 90910 68 21908 71369 23.49 93277 69 20134 67497 22.98 87631 70 20143 67182 23.07 87325 71 20562 63734 24.39 84296 72 19625 63282 23.67 82907 73 19756 64830 23.36 84586 74 18059 62947 22.29 81006 75 18162 61871 22.69 80033 76 18517 61198 23.23 79715 77 17934 60205 22.95 78139 78 18359 60485 23.29 78844 79 17545 59468 22.78 77013 80 16910 57873 22.61 74783 81 16737 57171 22.65 73908 82 16848 57170 22.76 74018 83 16960 55680 23.35 72640 84 18046 58600 23.54 76646 85 16256 55317 22.71 71573 86 16001 54690 22.64 70691 87 15738 52571 23.04 68309 88 15692 52061 23.16 67753 89 16311 52882 23.57 69193 90 16033 51751 23.65 67784 91 15953 51588 23.62 67541 92 14972 50672 22.81 65644 93 14902 51008 22.61 65910 94 14994 49887 23.11 64881 95 15053 49857 23.19 64910 96 14863 49135 23.22 63998 97 15026 50400 22.97 65426 98 14018 45779 23.44 59797 99 12254 0 100.00 12254 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 51218 262783 16.31 314001 2 52296 264585 16.50 316881 3 49167 272387 15.29 321554 4 53368 281625 15.93 334993 5 4067 513448 0.79 517515 6 2919 610250 0.48 613169 7 1971 333740 0.59 335711 8 1949 359997 0.54 361946 9 1675 307817 0.54 309492 10 1806 296401 0.61 298207 11 2254 372928 0.60 375182 12 1802 307189 0.58 308991 13 1870 307794 0.60 309664 14 1951 303882 0.64 305833 15 1851 285475 0.64 287326 16 1711 267651 0.64 269362 17 1947 289347 0.67 291294 18 2082 257143 0.80 259225 19 1812 255385 0.70 257197 20 1838 252389 0.72 254227 21 2158 245214 0.87 247372 22 1990 261187 0.76 263177 23 1864 260707 0.71 262571 24 1836 236399 0.77 238235 25 1873 243135 0.76 245008 26 1986 252249 0.78 254235 27 1879 234368 0.80 236247 28 1786 223847 0.79 225633 29 1921 236940 0.80 238861 30 2016 233801 0.85 235817 31 1824 223929 0.81 225753 32 1833 229617 0.79 231450 33 1947 255158 0.76 257105 34 1868 223485 0.83 225353 35 1911 227769 0.83 229680 36 1875 225092 0.83 226967 37 1736 210884 0.82 212620 38 1770 217547 0.81 219317 39 1761 211593 0.83 213354 40 1816 206706 0.87 208522 41 1877 201900 0.92 203777 42 1922 189678 1.00 191600 43 1907 193970 0.97 195877 44 1823 197721 0.91 199544 45 1779 182574 0.96 184353 46 1763 183793 0.95 185556 47 1870 189980 0.97 191850 48 1743 181021 0.95 182764 49 1855 183813 1.00 185668 50 1859 182381 1.01 184240 51 1827 169803 1.06 171630 52 1834 168213 1.08 170047 53 2304 188452 1.21 190756 54 1727 172900 0.99 174627 55 1718 170348 1.00 172066 56 1600 171544 0.92 173144 57 1639 162727 1.00 164366 58 1363 159645 0.85 161008 59 1401 166082 0.84 167483 60 1309 156637 0.83 157946 61 1178 157733 0.74 158911 62 1186 159264 0.74 160450 63 1171 160177 0.73 161348 64 1065 148994 0.71 150059 65 1079 154396 0.69 155475 66 1012 143822 0.70 144834 67 1113 152108 0.73 153221 68 1025 148722 0.68 149747 69 1041 148313 0.70 149354 70 1048 146229 0.71 147277 71 1065 147603 0.72 148668 72 1011 138781 0.72 139792 73 975 137143 0.71 138118 74 969 143801 0.67 144770 75 895 137400 0.65 138295 76 921 130609 0.70 131530 77 1019 137520 0.74 138539 78 943 131008 0.71 131951 79 888 129802 0.68 130690 80 896 127784 0.70 128680 81 873 122607 0.71 123480 82 867 123120 0.70 123987 83 937 123715 0.75 124652 84 813 118353 0.68 119166 85 903 126247 0.71 127150 86 887 118179 0.74 119066 87 816 116663 0.69 117479 88 742 111581 0.66 112323 89 903 119314 0.75 120217 90 907 113761 0.79 114668 91 846 114631 0.73 115477 92 835 112946 0.73 113781 93 889 108494 0.81 109383 94 760 106923 0.71 107683 95 847 110156 0.76 111003 96 808 105594 0.76 106402 97 780 102711 0.75 103491 98 646 99407 0.65 100053 99 531 0 100.00 531 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 74280 373975 16.57 448255 2 61128 316644 16.18 377772 3 61975 322681 16.11 384656 4 62753 314456 16.64 377209 5 8922 594228 1.48 603150 6 8780 823757 1.05 832537 7 9627 1082147 0.88 1091774 8 9499 1073936 0.88 1083435 9 10125 1008449 0.99 1018574 10 9568 1039267 0.91 1048835 11 9591 1019367 0.93 1028958 12 9416 945218 0.99 954634 13 9353 979191 0.95 988544 14 9358 985183 0.94 994541 15 9404 992003 0.94 1001407 16 8783 946306 0.92 955089 17 9175 950358 0.96 959533 18 9271 942551 0.97 951822 19 8385 887205 0.94 895590 20 9032 920154 0.97 929186 21 8801 880923 0.99 889724 22 8750 862334 1.00 871084 23 8565 846377 1.00 854942 24 8048 812283 0.98 820331 25 8638 813294 1.05 821932 26 8228 807557 1.01 815785 27 9019 846899 1.05 855918 28 8347 814582 1.01 822929 29 8126 803314 1.00 811440 30 8535 780126 1.08 788661 31 8366 773228 1.07 781594 32 7843 756574 1.03 764417 33 8394 743525 1.12 751919 34 8060 738614 1.08 746674 35 8680 756856 1.13 765536 36 7917 749256 1.05 757173 37 7960 743574 1.06 751534 38 8265 764414 1.07 772679 39 7967 714289 1.10 722256 40 7934 732768 1.07 740702 41 7737 706716 1.08 714453 42 7771 709130 1.08 716901 43 7847 683275 1.14 691122 44 7458 684576 1.08 692034 45 7785 681547 1.13 689332 46 7333 686150 1.06 693483 47 7104 678318 1.04 685422 48 7348 661939 1.10 669287 49 6993 662118 1.05 669111 50 7023 653858 1.06 660881 51 7155 640431 1.10 647586 52 6753 610367 1.09 617120 53 6661 610936 1.08 617597 54 6567 597022 1.09 603589 55 6422 606966 1.05 613388 56 6416 599557 1.06 605973 57 6313 602674 1.04 608987 58 6110 590179 1.02 596289 59 5858 570058 1.02 575916 60 5823 582557 0.99 588380 61 5768 561103 1.02 566871 62 5616 560627 0.99 566243 63 5444 556817 0.97 562261 64 5443 542903 0.99 548346 65 5262 541980 0.96 547242 66 5386 525221 1.02 530607 67 5114 525118 0.96 530232 68 5212 539527 0.96 544739 69 5263 522241 1.00 527504 70 5048 511777 0.98 516825 71 5007 508593 0.97 513600 72 5104 501136 1.01 506240 73 4965 494586 0.99 499551 74 4767 494296 0.96 499063 75 4898 493584 0.98 498482 76 4648 480525 0.96 485173 77 4815 472312 1.01 477127 78 4713 475602 0.98 480315 79 4699 478711 0.97 483410 80 4651 462145 1.00 466796 81 4765 458269 1.03 463034 82 4678 456214 1.01 460892 83 4477 451550 0.98 456027 84 4519 449623 1.00 454142 85 4447 440428 1.00 444875 86 4248 439195 0.96 443443 87 4384 432479 1.00 436863 88 4091 423427 0.96 427518 89 4151 421429 0.98 425580 90 4378 420116 1.03 424494 91 4050 417450 0.96 421500 92 3952 413433 0.95 417385 93 4028 407023 0.98 411051 94 3915 396614 0.98 400529 95 3980 394482 1.00 398462 96 3793 387713 0.97 391506 97 3665 385615 0.94 389280 98 3139 365507 0.85 368646 99 2233 0 100.00 2233