Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-113_S30_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-113_S30_L005_R2_001_val_2.fq.gz

Data processed at 10:20 on 2019-02-20


Sequence pairs analysed in total 26302191
Paired-end alignments with a unique best hit 14915352
Pairs without alignments under any condition 7816415
Pairs that did not map uniquely 3570424
Genomic sequence context not extractable (edges of chromosomes) 7118

Cytosine Methylation

Total C's analysed 468291724
Methylated C's in CpG context 14286060
Methylated C's in CHG context 2212698
Methylated C's in CHH context 4657890
Methylated C's in Unknown context 156302
Unmethylated C's in CpG context 51420980
Unmethylated C's in CHG context 97025823
Unmethylated C's in CHH context 298688273
Unmethylated C's in Unknown context 2647727
Percentage methylation (CpG context) 21.7%
Percentage methylation (CHG context) 2.2%
Percentage methylation (CHH context) 1.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 7548305 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7359929 original bottom strand