/gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-113_S30_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-113_S30_L005_R2_001_val_2.fq.gz
Data processed at 10:20 on 2019-02-20
Alignment
Sequence pairs analysed in total
26302191
Paired-end alignments with a unique best hit
14915352
Pairs without alignments under any condition
7816415
Pairs that did not map uniquely
3570424
Genomic sequence context not extractable (edges of chromosomes)
7118
Cytosine Methylation
Total C's analysed
468291724
Methylated C's in CpG context
14286060
Methylated C's in CHG context
2212698
Methylated C's in CHH context
4657890
Methylated C's in Unknown context
156302
Unmethylated C's in CpG context
51420980
Unmethylated C's in CHG context
97025823
Unmethylated C's in CHH context
298688273
Unmethylated C's in Unknown context
2647727
Percentage methylation (CpG context)
21.7%
Percentage methylation (CHG context)
2.2%
Percentage methylation (CHH context)
1.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7548305
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
7359929
original bottom strand
Deduplication
Alignments analysed
14908234
Unique alignments
12281446
Duplicates removed
2626788
Duplicated alignments were found at 1117697 different positions