CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 240425 414293 36.72 654718 2 219058 445049 32.99 664107 3 194921 385418 33.59 580339 4 193313 287610 40.20 480923 5 184804 239387 43.57 424191 6 182888 206045 47.02 388933 7 201334 200272 50.13 401606 8 95483 228861 29.44 324344 9 85294 208239 29.06 293533 10 85978 198755 30.20 284733 11 89749 204195 30.53 293944 12 87034 208669 29.43 295703 13 85030 215837 28.26 300867 14 80437 212696 27.44 293133 15 77706 216291 26.43 293997 16 70898 211072 25.14 281970 17 66903 205485 24.56 272388 18 68753 208611 24.79 277364 19 68171 212495 24.29 280666 20 68796 213308 24.39 282104 21 69604 216376 24.34 285980 22 67307 213646 23.96 280953 23 67599 212274 24.15 279873 24 65918 211273 23.78 277191 25 64098 210431 23.35 274529 26 64395 206771 23.75 271166 27 64700 213409 23.26 278109 28 66655 210167 24.08 276822 29 64823 218335 22.89 283158 30 63860 212230 23.13 276090 31 65166 208613 23.80 273779 32 63088 205096 23.52 268184 33 63860 206532 23.62 270392 34 65038 205715 24.02 270753 35 62855 205145 23.45 268000 36 62941 207280 23.29 270221 37 61260 203221 23.16 264481 38 61627 202916 23.30 264543 39 63198 205074 23.56 268272 40 63509 202731 23.85 266240 41 63446 204042 23.72 267488 42 64057 207627 23.58 271684 43 63453 207498 23.42 270951 44 63286 206069 23.50 269355 45 63754 205851 23.65 269605 46 64902 206468 23.92 271370 47 64183 202548 24.06 266731 48 63808 203762 23.85 267570 49 64755 203146 24.17 267901 50 62542 209457 22.99 271999 51 63147 206950 23.38 270097 52 63536 214889 22.82 278425 53 61832 204429 23.22 266261 54 61399 203235 23.20 264634 55 60529 197797 23.43 258326 56 60422 195691 23.59 256113 57 61253 199170 23.52 260423 58 61873 198710 23.74 260583 59 62827 198558 24.04 261385 60 61275 201366 23.33 262641 61 61854 197490 23.85 259344 62 60966 200712 23.30 261678 63 60180 197525 23.35 257705 64 59926 196880 23.34 256806 65 60600 192727 23.92 253327 66 60840 193690 23.90 254530 67 59653 189446 23.95 249099 68 58612 189458 23.63 248070 69 58375 187261 23.76 245636 70 57941 187214 23.63 245155 71 57059 185880 23.49 242939 72 56759 185257 23.45 242016 73 56270 182349 23.58 238619 74 55419 180697 23.47 236116 75 54284 180378 23.13 234662 76 53884 177815 23.26 231699 77 54384 176894 23.51 231278 78 54562 177360 23.53 231922 79 53615 174869 23.47 228484 80 52570 174832 23.12 227402 81 51921 172312 23.15 224233 82 50905 171655 22.87 222560 83 51186 171768 22.96 222954 84 51241 171785 22.98 223026 85 50691 168687 23.11 219378 86 49487 166549 22.91 216036 87 48451 165812 22.61 214263 88 48457 164568 22.75 213025 89 48010 162976 22.76 210986 90 47563 162177 22.68 209740 91 47526 159581 22.95 207107 92 46365 158839 22.59 205204 93 46245 158315 22.61 204560 94 46039 156829 22.69 202868 95 45397 155470 22.60 200867 96 45790 157930 22.48 203720 97 44024 151551 22.51 195575 98 41019 142480 22.35 183499 99 32063 111440 22.34 143503 100 41859 141269 22.86 183128 101 38662 141216 21.49 179878 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 366622 418549 46.69 785171 2 215564 377976 36.32 593540 3 85368 369122 18.78 454490 4 37654 380017 9.02 417671 5 22302 352944 5.94 375246 6 18957 349288 5.15 368245 7 14394 430920 3.23 445314 8 5998 466938 1.27 472936 9 4928 430371 1.13 435299 10 4990 411136 1.20 416126 11 5270 412895 1.26 418165 12 5222 417580 1.24 422802 13 4623 396414 1.15 401037 14 4151 395635 1.04 399786 15 4052 406318 0.99 410370 16 3587 405180 0.88 408767 17 3667 399634 0.91 403301 18 3709 400424 0.92 404133 19 3295 399773 0.82 403068 20 3319 419066 0.79 422385 21 3388 427969 0.79 431357 22 3358 422681 0.79 426039 23 3551 425605 0.83 429156 24 3260 430416 0.75 433676 25 3292 415414 0.79 418706 26 3815 420306 0.90 424121 27 3361 425248 0.78 428609 28 3155 423515 0.74 426670 29 3659 427647 0.85 431306 30 3345 432611 0.77 435956 31 3215 425355 0.75 428570 32 3200 426007 0.75 429207 33 3300 427006 0.77 430306 34 3126 419511 0.74 422637 35 3322 422882 0.78 426204 36 3295 424297 0.77 427592 37 3174 413865 0.76 417039 38 3422 419973 0.81 423395 39 3319 418412 0.79 421731 40 3253 416520 0.77 419773 41 3316 416233 0.79 419549 42 3167 420821 0.75 423988 43 3229 414416 0.77 417645 44 3203 421690 0.75 424893 45 3283 421133 0.77 424416 46 3150 414558 0.75 417708 47 3263 417865 0.77 421128 48 3276 424725 0.77 428001 49 3159 417553 0.75 420712 50 3538 417220 0.84 420758 51 3364 420840 0.79 424204 52 3353 419993 0.79 423346 53 3437 417702 0.82 421139 54 3441 423918 0.81 427359 55 3454 417474 0.82 420928 56 3666 422819 0.86 426485 57 3709 420969 0.87 424678 58 4301 416846 1.02 421147 59 3912 419700 0.92 423612 60 3970 422808 0.93 426778 61 4110 418832 0.97 422942 62 4149 420412 0.98 424561 63 4153 415412 0.99 419565 64 4197 414835 1.00 419032 65 4677 410229 1.13 414906 66 4350 404609 1.06 408959 67 4210 395138 1.05 399348 68 4484 400388 1.11 404872 69 4204 399744 1.04 403948 70 4024 393482 1.01 397506 71 4327 390548 1.10 394875 72 4217 391968 1.06 396185 73 4075 384147 1.05 388222 74 4134 381245 1.07 385379 75 4125 383020 1.07 387145 76 4090 374784 1.08 378874 77 4159 375880 1.09 380039 78 3918 370448 1.05 374366 79 4021 363924 1.09 367945 80 3965 361290 1.09 365255 81 4083 358583 1.13 362666 82 3904 352917 1.09 356821 83 3986 358362 1.10 362348 84 4107 358047 1.13 362154 85 3952 350123 1.12 354075 86 4096 354275 1.14 358371 87 4123 351933 1.16 356056 88 4078 344997 1.17 349075 89 4161 343148 1.20 347309 90 4039 343477 1.16 347516 91 4095 335914 1.20 340009 92 4210 338084 1.23 342294 93 4387 333961 1.30 338348 94 4105 327900 1.24 332005 95 4324 326141 1.31 330465 96 4396 325495 1.33 329891 97 4314 297706 1.43 302020 98 3911 272971 1.41 276882 99 2509 175480 1.41 177989 100 2973 179840 1.63 182813 101 5597 292984 1.87 298581 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 338076 482620 41.19 820696 2 157653 510654 23.59 668307 3 71489 639362 10.06 710851 4 56187 692800 7.50 748987 5 50444 826239 5.75 876683 6 40343 910965 4.24 951308 7 35239 1152472 2.97 1187711 8 22538 1241072 1.78 1263610 9 17771 1136909 1.54 1154680 10 17609 1113537 1.56 1131146 11 19929 1113568 1.76 1133497 12 18042 1137836 1.56 1155878 13 19406 1164584 1.64 1183990 14 20319 1196399 1.67 1216718 15 18084 1231582 1.45 1249666 16 17823 1263585 1.39 1281408 17 19508 1269287 1.51 1288795 18 17491 1321455 1.31 1338946 19 17988 1352530 1.31 1370518 20 19856 1394924 1.40 1414780 21 17553 1398727 1.24 1416280 22 18846 1405505 1.32 1424351 23 19959 1404358 1.40 1424317 24 17837 1408514 1.25 1426351 25 18835 1422293 1.31 1441128 26 19704 1434370 1.36 1454074 27 18282 1439670 1.25 1457952 28 17715 1439294 1.22 1457009 29 19918 1434403 1.37 1454321 30 17683 1422184 1.23 1439867 31 17721 1401999 1.25 1419720 32 19364 1412713 1.35 1432077 33 17707 1408939 1.24 1426646 34 19044 1420693 1.32 1439737 35 19644 1408333 1.38 1427977 36 18013 1420532 1.25 1438545 37 17551 1411059 1.23 1428610 38 19928 1421508 1.38 1441436 39 17723 1415970 1.24 1433693 40 17935 1419764 1.25 1437699 41 20060 1425002 1.39 1445062 42 18272 1437324 1.26 1455596 43 19285 1421638 1.34 1440923 44 19574 1433082 1.35 1452656 45 18286 1418811 1.27 1437097 46 18271 1425252 1.27 1443523 47 19273 1417950 1.34 1437223 48 17587 1421694 1.22 1439281 49 17895 1404383 1.26 1422278 50 18825 1400707 1.33 1419532 51 17430 1387635 1.24 1405065 52 18171 1386418 1.29 1404589 53 19208 1376546 1.38 1395754 54 17555 1382604 1.25 1400159 55 18100 1385454 1.29 1403554 56 19203 1379780 1.37 1398983 57 17474 1398109 1.23 1415583 58 19324 1381156 1.38 1400480 59 19649 1395490 1.39 1415139 60 17778 1376903 1.27 1394681 61 18375 1368787 1.32 1387162 62 19131 1356718 1.39 1375849 63 17790 1342127 1.31 1359917 64 18460 1333593 1.37 1352053 65 18928 1333191 1.40 1352119 66 17613 1324613 1.31 1342226 67 17545 1318392 1.31 1335937 68 18692 1310477 1.41 1329169 69 17211 1299647 1.31 1316858 70 17007 1295132 1.30 1312139 71 18622 1287567 1.43 1306189 72 17022 1285055 1.31 1302077 73 17918 1268078 1.39 1285996 74 18280 1266183 1.42 1284463 75 16903 1258168 1.33 1275071 76 16679 1250195 1.32 1266874 77 18379 1239674 1.46 1258053 78 15863 1229848 1.27 1245711 79 16401 1220365 1.33 1236766 80 17402 1213201 1.41 1230603 81 16130 1197652 1.33 1213782 82 16888 1188266 1.40 1205154 83 17446 1189521 1.45 1206967 84 16242 1175118 1.36 1191360 85 15873 1161815 1.35 1177688 86 16490 1151494 1.41 1167984 87 15306 1148144 1.32 1163450 88 15478 1140084 1.34 1155562 89 16519 1130761 1.44 1147280 90 15169 1122651 1.33 1137820 91 15308 1108544 1.36 1123852 92 16006 1108948 1.42 1124954 93 15167 1096176 1.36 1111343 94 15218 1086393 1.38 1101611 95 16305 1073557 1.50 1089862 96 14743 1051998 1.38 1066741 97 14968 1025856 1.44 1040824 98 14978 954919 1.54 969897 99 9872 661046 1.47 670918 100 10214 592664 1.69 602878 101 14701 960689 1.51 975390 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 138147 193251 41.69 331398 2 124569 176817 41.33 301386 3 135761 198636 40.60 334397 4 128894 222640 36.67 351534 5 54799 272669 16.73 327468 6 31776 148366 17.64 180142 7 28871 160450 15.25 189321 8 30870 148872 17.17 179742 9 27447 133612 17.04 161059 10 30808 146981 17.33 177789 11 33235 143629 18.79 176864 12 31983 139261 18.68 171244 13 32465 135701 19.31 168166 14 34577 137036 20.15 171613 15 33175 127680 20.62 160855 16 32111 123684 20.61 155795 17 38621 136268 22.08 174889 18 37093 128712 22.37 165805 19 35586 123293 22.40 158879 20 33638 122828 21.50 156466 21 35134 121172 22.48 156306 22 34225 123135 21.75 157360 23 32774 118120 21.72 150894 24 31108 112116 21.72 143224 25 34367 119070 22.40 153437 26 31502 113790 21.68 145292 27 34410 115471 22.96 149881 28 32619 111092 22.70 143711 29 32700 115059 22.13 147759 30 31634 106160 22.96 137794 31 30088 108235 21.75 138323 32 29375 101608 22.43 130983 33 31589 104111 23.28 135700 34 30851 106740 22.42 137591 35 36800 111136 24.88 147936 36 31712 101549 23.80 133261 37 32158 104964 23.45 137122 38 29422 101153 22.53 130575 39 30106 99284 23.27 129390 40 31607 100536 23.92 132143 41 29090 97185 23.04 126275 42 29401 99072 22.88 128473 43 29626 97336 23.33 126962 44 27574 94221 22.64 121795 45 32291 99633 24.48 131924 46 27271 90093 23.24 117364 47 27671 90964 23.32 118635 48 26832 89569 23.05 116401 49 26221 92991 22.00 119212 50 25399 85465 22.91 110864 51 25390 83565 23.30 108955 52 25811 86124 23.06 111935 53 26148 83238 23.90 109386 54 24846 83448 22.94 108294 55 24771 82605 23.07 107376 56 23188 81336 22.18 104524 57 23667 78218 23.23 101885 58 23583 78741 23.05 102324 59 23041 75327 23.42 98368 60 23165 76429 23.26 99594 61 20888 73256 22.19 94144 62 20786 72354 22.32 93140 63 22281 70101 24.12 92382 64 21654 70585 23.48 92239 65 20598 67481 23.39 88079 66 21748 70177 23.66 91925 67 20228 68708 22.74 88936 68 21186 69807 23.28 90993 69 19709 65937 23.01 85646 70 19302 65742 22.70 85044 71 19982 62729 24.16 82711 72 19062 62077 23.49 81139 73 18947 63316 23.03 82263 74 17509 61577 22.14 79086 75 17624 59723 22.79 77347 76 17806 60008 22.88 77814 77 17501 58528 23.02 76029 78 17796 58845 23.22 76641 79 16846 57938 22.53 74784 80 16454 56827 22.45 73281 81 16357 56268 22.52 72625 82 16488 55414 22.93 71902 83 16593 54094 23.47 70687 84 17221 56435 23.38 73656 85 15808 54192 22.58 70000 86 15283 52752 22.46 68035 87 15573 51207 23.32 66780 88 15082 50921 22.85 66003 89 15836 51609 23.48 67445 90 15722 50941 23.58 66663 91 15143 50179 23.18 65322 92 14454 49307 22.67 63761 93 14568 49474 22.75 64042 94 14735 48692 23.23 63427 95 14462 48214 23.07 62676 96 14367 47651 23.17 62018 97 14918 48472 23.53 63390 98 13485 45174 22.99 58659 99 11957 0 100.00 11957 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 49603 267535 15.64 317138 2 51573 271625 15.96 323198 3 49567 277772 15.14 327339 4 53190 288215 15.58 341405 5 4156 521843 0.79 525999 6 2881 617669 0.46 620550 7 1925 336439 0.57 338364 8 1916 361832 0.53 363748 9 1670 311460 0.53 313130 10 1672 297357 0.56 299029 11 2282 372428 0.61 374710 12 1805 308703 0.58 310508 13 1836 310391 0.59 312227 14 1841 305914 0.60 307755 15 1924 286728 0.67 288652 16 1700 270525 0.62 272225 17 2052 290239 0.70 292291 18 2164 257806 0.83 259970 19 1853 255530 0.72 257383 20 1849 253556 0.72 255405 21 2272 245563 0.92 247835 22 2091 264162 0.79 266253 23 2025 260385 0.77 262410 24 1942 237197 0.81 239139 25 1868 240997 0.77 242865 26 1914 251093 0.76 253007 27 1893 234852 0.80 236745 28 1653 223399 0.73 225052 29 1882 237722 0.79 239604 30 2034 233178 0.86 235212 31 1839 223835 0.81 225674 32 1784 226656 0.78 228440 33 1994 251855 0.79 253849 34 1911 222138 0.85 224049 35 2065 225471 0.91 227536 36 1887 222926 0.84 224813 37 1787 208178 0.85 209965 38 1948 215983 0.89 217931 39 1785 208896 0.85 210681 40 1890 204340 0.92 206230 41 1856 199412 0.92 201268 42 1907 187158 1.01 189065 43 2088 191509 1.08 193597 44 1775 194720 0.90 196495 45 1730 180338 0.95 182068 46 1838 181466 1.00 183304 47 1910 187333 1.01 189243 48 1909 178041 1.06 179950 49 1758 182212 0.96 183970 50 1917 178562 1.06 180479 51 1893 166266 1.13 168159 52 2114 165335 1.26 167449 53 2424 184753 1.30 187177 54 1786 169461 1.04 171247 55 1756 168678 1.03 170434 56 1717 167905 1.01 169622 57 1829 158756 1.14 160585 58 1483 154971 0.95 156454 59 1403 160686 0.87 162089 60 1244 154224 0.80 155468 61 1085 155436 0.69 156521 62 1061 154544 0.68 155605 63 1160 155830 0.74 156990 64 1074 145375 0.73 146449 65 1108 150340 0.73 151448 66 1036 139993 0.73 141029 67 1101 148653 0.74 149754 68 1006 144869 0.69 145875 69 1010 144186 0.70 145196 70 983 141663 0.69 142646 71 1022 144032 0.70 145054 72 981 134696 0.72 135677 73 915 133314 0.68 134229 74 919 139508 0.65 140427 75 963 132102 0.72 133065 76 793 126655 0.62 127448 77 966 132614 0.72 133580 78 897 125752 0.71 126649 79 913 125725 0.72 126638 80 850 123868 0.68 124718 81 856 119193 0.71 120049 82 832 118450 0.70 119282 83 884 119496 0.73 120380 84 885 113779 0.77 114664 85 866 121962 0.71 122828 86 786 114214 0.68 115000 87 828 113158 0.73 113986 88 775 107911 0.71 108686 89 927 115460 0.80 116387 90 909 109840 0.82 110749 91 748 110987 0.67 111735 92 775 109151 0.71 109926 93 823 104883 0.78 105706 94 784 104024 0.75 104808 95 845 106345 0.79 107190 96 782 102451 0.76 103233 97 782 99736 0.78 100518 98 576 95592 0.60 96168 99 479 0 100.00 479 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 76114 393171 16.22 469285 2 63317 331551 16.03 394868 3 64715 337483 16.09 402198 4 63506 327415 16.25 390921 5 9841 609413 1.59 619254 6 9447 838051 1.11 847498 7 10283 1098459 0.93 1108742 8 9991 1089539 0.91 1099530 9 10838 1027232 1.04 1038070 10 10214 1055162 0.96 1065376 11 10483 1030800 1.01 1041283 12 10238 959095 1.06 969333 13 10056 992705 1.00 1002761 14 9729 997548 0.97 1007277 15 9862 1003658 0.97 1013520 16 9081 954088 0.94 963169 17 9909 956966 1.02 966875 18 9625 950643 1.00 960268 19 8914 896050 0.99 904964 20 9775 926601 1.04 936376 21 9474 887819 1.06 897293 22 9473 869550 1.08 879023 23 9011 848464 1.05 857475 24 8698 813685 1.06 822383 25 9269 815748 1.12 825017 26 8634 809455 1.06 818089 27 9618 843905 1.13 853523 28 8708 818406 1.05 827114 29 8890 805798 1.09 814688 30 9207 783573 1.16 792780 31 8628 773706 1.10 782334 32 8222 757743 1.07 765965 33 8861 742402 1.18 751263 34 8638 737688 1.16 746326 35 9076 754481 1.19 763557 36 8450 746128 1.12 754578 37 8106 740889 1.08 748995 38 8736 758491 1.14 767227 39 8727 710759 1.21 719486 40 8253 727361 1.12 735614 41 8323 702646 1.17 710969 42 8322 701812 1.17 710134 43 8199 679648 1.19 687847 44 7757 680143 1.13 687900 45 8291 674543 1.21 682834 46 7733 681945 1.12 689678 47 7612 672730 1.12 680342 48 7710 654222 1.16 661932 49 7231 653312 1.09 660543 50 7600 646468 1.16 654068 51 7492 632538 1.17 640030 52 7046 600833 1.16 607879 53 7134 602758 1.17 609892 54 6871 587567 1.16 594438 55 6714 596696 1.11 603410 56 6723 589262 1.13 595985 57 6698 591782 1.12 598480 58 6346 580177 1.08 586523 59 6126 559455 1.08 565581 60 5994 570671 1.04 576665 61 5896 550868 1.06 556764 62 5698 551081 1.02 556779 63 5624 547252 1.02 552876 64 5650 532014 1.05 537664 65 5254 532957 0.98 538211 66 5536 516882 1.06 522418 67 5067 514226 0.98 519293 68 5384 526244 1.01 531628 69 5425 510399 1.05 515824 70 5099 499277 1.01 504376 71 5161 494955 1.03 500116 72 5287 489370 1.07 494657 73 5006 484557 1.02 489563 74 4735 483776 0.97 488511 75 4950 481789 1.02 486739 76 4800 467728 1.02 472528 77 4941 459183 1.06 464124 78 4925 463501 1.05 468426 79 4691 466589 1.00 471280 80 4749 450566 1.04 455315 81 4908 447303 1.09 452211 82 4656 444759 1.04 449415 83 4491 439465 1.01 443956 84 4704 436681 1.07 441385 85 4399 429439 1.01 433838 86 4222 427222 0.98 431444 87 4484 420625 1.05 425109 88 4223 411350 1.02 415573 89 4294 409114 1.04 413408 90 4415 408497 1.07 412912 91 4187 404880 1.02 409067 92 4066 400656 1.00 404722 93 4008 394194 1.01 398202 94 3940 386339 1.01 390279 95 3849 384394 0.99 388243 96 3684 376455 0.97 380139 97 3585 374574 0.95 378159 98 3162 352943 0.89 356105 99 2327 0 100.00 2327