Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-111_S29_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-111_S29_L005_R2_001_val_2.fq.gz

Data processed at 10:20 on 2019-02-20


Sequence pairs analysed in total 27014996
Paired-end alignments with a unique best hit 15607855
Pairs without alignments under any condition 7982916
Pairs that did not map uniquely 3424225
Genomic sequence context not extractable (edges of chromosomes) 7778

Cytosine Methylation

Total C's analysed 486467414
Methylated C's in CpG context 14916289
Methylated C's in CHG context 2340181
Methylated C's in CHH context 5100565
Methylated C's in Unknown context 182231
Unmethylated C's in CpG context 53071484
Unmethylated C's in CHG context 100542815
Unmethylated C's in CHH context 310496080
Unmethylated C's in Unknown context 2666838
Percentage methylation (CpG context) 21.9%
Percentage methylation (CHG context) 2.3%
Percentage methylation (CHH context) 1.6%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 7907387 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7692690 original bottom strand