/gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-111_S29_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-111_S29_L005_R2_001_val_2.fq.gz
Data processed at 10:20 on 2019-02-20
Alignment
Sequence pairs analysed in total
27014996
Paired-end alignments with a unique best hit
15607855
Pairs without alignments under any condition
7982916
Pairs that did not map uniquely
3424225
Genomic sequence context not extractable (edges of chromosomes)
7778
Cytosine Methylation
Total C's analysed
486467414
Methylated C's in CpG context
14916289
Methylated C's in CHG context
2340181
Methylated C's in CHH context
5100565
Methylated C's in Unknown context
182231
Unmethylated C's in CpG context
53071484
Unmethylated C's in CHG context
100542815
Unmethylated C's in CHH context
310496080
Unmethylated C's in Unknown context
2666838
Percentage methylation (CpG context)
21.9%
Percentage methylation (CHG context)
2.3%
Percentage methylation (CHH context)
1.6%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
7907387
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
7692690
original bottom strand
Deduplication
Alignments analysed
15600077
Unique alignments
12876786
Duplicates removed
2723291
Duplicated alignments were found at 1171198 different positions