File Total Reads Aligned Reads Unaligned Reads Ambiguously Aligned Reads No Genomic Sequence Duplicate Reads (removed) Unique Reads (remaining) Total Cs Methylated CpGs Unmethylated CpGs Methylated CpHs Unmethylated CpHs Methylated CHHs Unmethylated CHHs EPI-111_S29_L005_R1_001_val_1_bismark_bt2_pe.bam 27014996 13025293 11583837 2334656 71210 2492731 10532562 236315921 7947047 24524456 1212866 47714057 2796994 152120501 EPI-113_S30_L005_R1_001_val_1_bismark_bt2_pe.bam 26302191 15835414 6555252 3851005 60520 2965373 12870041 298195943 10238561 30083438 1480239 60638006 3180972 192574727 EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.bam 28905983 16928820 7651911 4291254 33998 3232662 13696158 326722000 10484577 35522646 1549852 66087062 3512575 209565288 EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.bam 24140505 15041361 5711157 3333613 54374 2670153 12371208 289701880 9977586 29570438 1429571 58764036 3184038 186776211