EPI-120_S32_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 12371208 lines in total Total number of methylation call strings processed: 24742416 Final Cytosine Methylation Report ================================= Total number of C's analysed: 289701880 Total methylated C's in CpG context: 9977586 Total methylated C's in CHG context: 1429571 Total methylated C's in CHH context: 3184038 Total C to T conversions in CpG context: 29570438 Total C to T conversions in CHG context: 58764036 Total C to T conversions in CHH context: 186776211 C methylated in CpG context: 25.2% C methylated in CHG context: 2.4% C methylated in CHH context: 1.7%