CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 234278 404031 36.70 638309 2 213668 427508 33.32 641176 3 190538 373770 33.76 564308 4 192703 279790 40.78 472493 5 182402 232315 43.98 414717 6 180099 200889 47.27 380988 7 198164 194783 50.43 392947 8 93771 223552 29.55 317323 9 84165 204649 29.14 288814 10 85447 194970 30.47 280417 11 88888 199353 30.84 288241 12 85702 204837 29.50 290539 13 83397 210529 28.37 293926 14 77805 208912 27.14 286717 15 74207 210816 26.04 285023 16 68652 205134 25.08 273786 17 63890 200019 24.21 263909 18 66404 203532 24.60 269936 19 65340 206485 24.04 271825 20 66125 208276 24.10 274401 21 67116 211318 24.10 278434 22 65168 208771 23.79 273939 23 64876 206573 23.90 271449 24 63950 205699 23.72 269649 25 61648 204028 23.20 265676 26 62318 201312 23.64 263630 27 62610 207648 23.17 270258 28 64195 204080 23.93 268275 29 62476 210846 22.86 273322 30 61052 205956 22.87 267008 31 62513 202894 23.55 265407 32 61044 198623 23.51 259667 33 61757 200365 23.56 262122 34 63073 199306 24.04 262379 35 61151 197887 23.61 259038 36 60964 201819 23.20 262783 37 59385 198297 23.05 257682 38 58900 197135 23.00 256035 39 60297 199890 23.17 260187 40 61264 197648 23.66 258912 41 61310 198914 23.56 260224 42 61423 202099 23.31 263522 43 61062 200941 23.31 262003 44 60245 198950 23.24 259195 45 61272 198852 23.55 260124 46 62315 200644 23.70 262959 47 61988 197144 23.92 259132 48 61684 198482 23.71 260166 49 62931 197848 24.13 260779 50 60516 201228 23.12 261744 51 61318 200484 23.42 261802 52 61169 208780 22.66 269949 53 60272 198537 23.29 258809 54 59003 197022 23.05 256025 55 59077 192265 23.50 251342 56 58391 189912 23.52 248303 57 59777 192163 23.73 251940 58 59710 192783 23.65 252493 59 60532 193785 23.80 254317 60 58965 194328 23.28 253293 61 60173 192495 23.82 252668 62 58570 195533 23.05 254103 63 57423 192845 22.94 250268 64 57910 192350 23.14 250260 65 58282 188254 23.64 246536 66 58579 190133 23.55 248712 67 58432 186433 23.86 244865 68 57264 185919 23.55 243183 69 56062 184347 23.32 240409 70 56271 183899 23.43 240170 71 55183 183266 23.14 238449 72 55163 181802 23.28 236965 73 54668 179974 23.30 234642 74 53841 177885 23.23 231726 75 53440 177029 23.19 230469 76 52676 174845 23.15 227521 77 53669 174756 23.50 228425 78 53129 175229 23.27 228358 79 51826 173356 23.02 225182 80 50847 172383 22.78 223230 81 50319 171164 22.72 221483 82 49016 169553 22.43 218569 83 50060 170994 22.65 221054 84 50490 171189 22.78 221679 85 49859 169991 22.68 219850 86 49053 166441 22.76 215494 87 47613 165731 22.32 213344 88 47857 164431 22.54 212288 89 47208 162477 22.51 209685 90 47312 162923 22.50 210235 91 46945 160876 22.59 207821 92 45874 159397 22.35 205271 93 45464 160202 22.11 205666 94 45904 157248 22.60 203152 95 44930 155685 22.40 200615 96 45535 159191 22.24 204726 97 43975 152131 22.42 196106 98 41058 144070 22.18 185128 99 31858 112483 22.07 144341 100 41897 143996 22.54 185893 101 38146 141764 21.20 179910 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 350719 401854 46.60 752573 2 207412 357136 36.74 564548 3 80607 350464 18.70 431071 4 35513 364791 8.87 400304 5 20457 340573 5.67 361030 6 16662 333058 4.76 349720 7 13571 419884 3.13 433455 8 6011 452729 1.31 458740 9 4986 417314 1.18 422300 10 4880 395906 1.22 400786 11 5100 398178 1.26 403278 12 5038 401074 1.24 406112 13 4548 384422 1.17 388970 14 3982 384079 1.03 388061 15 3777 393296 0.95 397073 16 3510 393280 0.88 396790 17 3526 388863 0.90 392389 18 3628 388284 0.93 391912 19 3103 387963 0.79 391066 20 3355 407252 0.82 410607 21 3126 414036 0.75 417162 22 3415 409934 0.83 413349 23 3493 413458 0.84 416951 24 3343 417796 0.79 421139 25 3253 402189 0.80 405442 26 3831 410082 0.93 413913 27 3219 412726 0.77 415945 28 3146 410974 0.76 414120 29 3478 415163 0.83 418641 30 3278 420077 0.77 423355 31 3175 411857 0.77 415032 32 3149 412923 0.76 416072 33 3230 413981 0.77 417211 34 3184 407401 0.78 410585 35 3356 410115 0.81 413471 36 3203 411628 0.77 414831 37 3234 402297 0.80 405531 38 3487 407112 0.85 410599 39 3329 405666 0.81 408995 40 3149 402512 0.78 405661 41 3111 404361 0.76 407472 42 3219 408046 0.78 411265 43 3074 401830 0.76 404904 44 3110 407596 0.76 410706 45 3185 408404 0.77 411589 46 3050 404133 0.75 407183 47 3244 405202 0.79 408446 48 3252 410670 0.79 413922 49 3127 403994 0.77 407121 50 3347 405189 0.82 408536 51 3272 407753 0.80 411025 52 3247 406308 0.79 409555 53 3329 405294 0.81 408623 54 3533 410554 0.85 414087 55 3433 404587 0.84 408020 56 3436 408465 0.83 411901 57 3461 407902 0.84 411363 58 4056 403139 1.00 407195 59 3701 406883 0.90 410584 60 3761 411448 0.91 415209 61 3822 404854 0.94 408676 62 3878 407873 0.94 411751 63 3854 402908 0.95 406762 64 4025 402123 0.99 406148 65 4304 399926 1.06 404230 66 4132 395481 1.03 399613 67 4071 385891 1.04 389962 68 4111 388748 1.05 392859 69 3910 388678 1.00 392588 70 3927 384394 1.01 388321 71 3983 382703 1.03 386686 72 3851 382055 1.00 385906 73 3912 375606 1.03 379518 74 3961 374984 1.05 378945 75 3885 376894 1.02 380779 76 3906 367723 1.05 371629 77 3992 369673 1.07 373665 78 3829 364851 1.04 368680 79 3742 358373 1.03 362115 80 3796 357193 1.05 360989 81 3836 354144 1.07 357980 82 3813 350138 1.08 353951 83 3914 355412 1.09 359326 84 3920 356190 1.09 360110 85 4000 348069 1.14 352069 86 3956 351057 1.11 355013 87 3939 350582 1.11 354521 88 3835 343688 1.10 347523 89 3926 341533 1.14 345459 90 3886 342683 1.12 346569 91 4026 336393 1.18 340419 92 4209 337327 1.23 341536 93 4287 335718 1.26 340005 94 4135 329896 1.24 334031 95 4217 328958 1.27 333175 96 4245 326508 1.28 330753 97 4084 299327 1.35 303411 98 3879 274633 1.39 278512 99 2431 177793 1.35 180224 100 2773 181739 1.50 184512 101 5304 292549 1.78 297853 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 313964 450874 41.05 764838 2 146780 476650 23.54 623430 3 67181 607046 9.96 674227 4 53596 658967 7.52 712563 5 47384 784366 5.70 831750 6 38178 864178 4.23 902356 7 34413 1099787 3.03 1134200 8 21361 1180466 1.78 1201827 9 16759 1081570 1.53 1098329 10 16434 1057752 1.53 1074186 11 18635 1061351 1.73 1079986 12 16644 1089218 1.51 1105862 13 18386 1115654 1.62 1134040 14 18772 1147534 1.61 1166306 15 17125 1182785 1.43 1199910 16 16551 1212644 1.35 1229195 17 18092 1222420 1.46 1240512 18 16432 1270463 1.28 1286895 19 16390 1302393 1.24 1318783 20 18202 1341645 1.34 1359847 21 16533 1347744 1.21 1364277 22 17124 1350404 1.25 1367528 23 18364 1352678 1.34 1371042 24 16704 1354711 1.22 1371415 25 17357 1365763 1.25 1383120 26 18719 1375991 1.34 1394710 27 16746 1382321 1.20 1399067 28 16703 1383458 1.19 1400161 29 18387 1379113 1.32 1397500 30 16630 1366922 1.20 1383552 31 16727 1347639 1.23 1364366 32 17810 1357933 1.29 1375743 33 16236 1353911 1.18 1370147 34 17894 1362980 1.30 1380874 35 18323 1352113 1.34 1370436 36 16792 1362740 1.22 1379532 37 16504 1359112 1.20 1375616 38 18302 1364803 1.32 1383105 39 16532 1356812 1.20 1373344 40 16937 1361167 1.23 1378104 41 18811 1364966 1.36 1383777 42 17259 1375631 1.24 1392890 43 17872 1360069 1.30 1377941 44 18097 1368712 1.30 1386809 45 17211 1359701 1.25 1376912 46 16909 1362919 1.23 1379828 47 18121 1360329 1.31 1378450 48 16348 1362122 1.19 1378470 49 16547 1347263 1.21 1363810 50 17686 1344780 1.30 1362466 51 16040 1332199 1.19 1348239 52 17016 1330310 1.26 1347326 53 17846 1324992 1.33 1342838 54 16377 1328152 1.22 1344529 55 16826 1330629 1.25 1347455 56 17738 1326390 1.32 1344128 57 16357 1341123 1.20 1357480 58 18146 1327638 1.35 1345784 59 18418 1344751 1.35 1363169 60 16186 1323878 1.21 1340064 61 17242 1319411 1.29 1336653 62 17695 1309225 1.33 1326920 63 16479 1298444 1.25 1314923 64 17350 1290160 1.33 1307510 65 17446 1289848 1.33 1307294 66 16349 1283163 1.26 1299512 67 16395 1278008 1.27 1294403 68 17326 1272133 1.34 1289459 69 16260 1266663 1.27 1282923 70 16469 1263411 1.29 1279880 71 17316 1255608 1.36 1272924 72 16231 1252011 1.28 1268242 73 17179 1242200 1.36 1259379 74 17435 1238393 1.39 1255828 75 15879 1232032 1.27 1247911 76 16023 1226693 1.29 1242716 77 17159 1216362 1.39 1233521 78 15223 1206739 1.25 1221962 79 15614 1200898 1.28 1216512 80 16314 1193956 1.35 1210270 81 15529 1182948 1.30 1198477 82 15985 1173872 1.34 1189857 83 16442 1176975 1.38 1193417 84 15355 1163556 1.30 1178911 85 14961 1150760 1.28 1165721 86 15760 1140911 1.36 1156671 87 14503 1137010 1.26 1151513 88 14568 1132020 1.27 1146588 89 15628 1121270 1.37 1136898 90 14444 1118601 1.27 1133045 91 15031 1105152 1.34 1120183 92 15768 1104660 1.41 1120428 93 14433 1093119 1.30 1107552 94 14754 1084534 1.34 1099288 95 15797 1073606 1.45 1089403 96 14389 1054149 1.35 1068538 97 14204 1028520 1.36 1042724 98 14513 957035 1.49 971548 99 9472 664523 1.41 673995 100 9796 596677 1.62 606473 101 14152 962761 1.45 976913 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 141593 199238 41.54 340831 2 126003 181447 40.98 307450 3 136915 202375 40.35 339290 4 130513 227823 36.42 358336 5 55467 283556 16.36 339023 6 31985 153255 17.27 185240 7 29709 165221 15.24 194930 8 31758 155922 16.92 187680 9 28185 138291 16.93 166476 10 31066 151596 17.01 182662 11 33290 148303 18.33 181593 12 32628 143107 18.57 175735 13 33270 140537 19.14 173807 14 34862 141674 19.75 176536 15 33722 131596 20.40 165318 16 32720 128430 20.30 161150 17 38836 140592 21.64 179428 18 37945 133258 22.16 171203 19 36109 128100 21.99 164209 20 34461 126125 21.46 160586 21 36142 125325 22.38 161467 22 35119 127621 21.58 162740 23 33554 123236 21.40 156790 24 32343 116274 21.76 148617 25 35200 124023 22.11 159223 26 32353 118969 21.38 151322 27 35197 119285 22.78 154482 28 33019 115637 22.21 148656 29 33854 119524 22.07 153378 30 32269 111177 22.50 143446 31 31287 113306 21.64 144593 32 30503 107248 22.14 137751 33 32832 108162 23.29 140994 34 32637 111747 22.60 144384 35 38267 116880 24.66 155147 36 33168 106747 23.71 139915 37 33190 110232 23.14 143422 38 30260 106589 22.11 136849 39 31499 104345 23.19 135844 40 32935 105901 23.72 138836 41 30560 101359 23.17 131919 42 30619 104292 22.70 134911 43 30928 102767 23.13 133695 44 28961 98766 22.67 127727 45 33861 104899 24.40 138760 46 28879 94416 23.42 123295 47 29307 95263 23.53 124570 48 28294 94676 23.01 122970 49 27623 96004 22.34 123627 50 26504 90517 22.65 117021 51 26800 89630 23.02 116430 52 27266 91862 22.89 119128 53 27193 88629 23.48 115822 54 26636 88041 23.23 114677 55 26238 87264 23.12 113502 56 25193 86376 22.58 111569 57 25649 83349 23.53 108998 58 25397 84016 23.21 109413 59 24431 80633 23.25 105064 60 25396 81996 23.65 107392 61 22349 78398 22.18 100747 62 22482 77452 22.50 99934 63 23943 76386 23.86 100329 64 23137 76399 23.24 99536 65 22488 72727 23.62 95215 66 23349 74811 23.79 98160 67 21719 74106 22.67 95825 68 22830 75094 23.31 97924 69 21240 71370 22.93 92610 70 21032 72315 22.53 93347 71 21264 68548 23.68 89812 72 20491 67234 23.36 87725 73 20678 69087 23.04 89765 74 18973 66128 22.29 85101 75 19084 65424 22.58 84508 76 19458 64951 23.05 84409 77 19017 64053 22.89 83070 78 19496 64491 23.21 83987 79 18242 63564 22.30 81806 80 18099 61694 22.68 79793 81 17681 61187 22.42 78868 82 17842 61380 22.52 79222 83 17957 59368 23.22 77325 84 19239 62083 23.66 81322 85 17279 59370 22.54 76649 86 16719 58292 22.29 75011 87 16811 56892 22.81 73703 88 16845 56690 22.91 73535 89 17859 56480 24.02 74339 90 17308 55985 23.61 73293 91 16665 54740 23.34 71405 92 16005 53947 22.88 69952 93 16263 54777 22.89 71040 94 16134 54214 22.93 70348 95 16205 53248 23.33 69453 96 15811 52838 23.03 68649 97 16745 53983 23.68 70728 98 15044 49227 23.41 64271 99 13260 0 100.00 13260 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 50459 267844 15.85 318303 2 52712 273478 16.16 326190 3 50269 278744 15.28 329013 4 53939 291118 15.63 345057 5 4106 527136 0.77 531242 6 3073 626992 0.49 630065 7 2043 343452 0.59 345495 8 2022 369782 0.54 371804 9 1739 315004 0.55 316743 10 1744 303667 0.57 305411 11 2443 379463 0.64 381906 12 2020 317640 0.63 319660 13 1950 316229 0.61 318179 14 1961 310967 0.63 312928 15 1932 293296 0.65 295228 16 1737 277423 0.62 279160 17 2023 295478 0.68 297501 18 2075 265491 0.78 267566 19 1983 262811 0.75 264794 20 1995 258700 0.77 260695 21 2234 251263 0.88 253497 22 2042 269468 0.75 271510 23 1941 267295 0.72 269236 24 1823 245056 0.74 246879 25 1916 249468 0.76 251384 26 1966 257958 0.76 259924 27 1907 242482 0.78 244389 28 1773 231972 0.76 233745 29 1923 244748 0.78 246671 30 1952 241219 0.80 243171 31 1907 232094 0.81 234001 32 1831 235382 0.77 237213 33 1994 261518 0.76 263512 34 1956 231261 0.84 233217 35 1970 234957 0.83 236927 36 1920 232323 0.82 234243 37 1761 218521 0.80 220282 38 1846 225317 0.81 227163 39 1893 217456 0.86 219349 40 1893 211393 0.89 213286 41 2008 208573 0.95 210581 42 1980 196794 1.00 198774 43 2006 201065 0.99 203071 44 1791 206022 0.86 207813 45 1752 191139 0.91 192891 46 1791 192294 0.92 194085 47 1862 197806 0.93 199668 48 1758 188006 0.93 189764 49 1684 191996 0.87 193680 50 1921 188602 1.01 190523 51 1788 176632 1.00 178420 52 2033 176392 1.14 178425 53 2470 195832 1.25 198302 54 1802 179800 0.99 181602 55 1750 177295 0.98 179045 56 1797 178668 1.00 180465 57 1717 169268 1.00 170985 58 1495 166789 0.89 168284 59 1494 172370 0.86 173864 60 1307 164122 0.79 165429 61 1247 165645 0.75 166892 62 1267 167171 0.75 168438 63 1286 167354 0.76 168640 64 1176 156897 0.74 158073 65 1176 160903 0.73 162079 66 1089 151787 0.71 152876 67 1127 159173 0.70 160300 68 1038 155741 0.66 156779 69 1098 154630 0.71 155728 70 1077 153174 0.70 154251 71 1049 154254 0.68 155303 72 1070 145311 0.73 146381 73 1013 144263 0.70 145276 74 1008 149240 0.67 150248 75 1065 144091 0.73 145156 76 940 138383 0.67 139323 77 1010 143852 0.70 144862 78 953 136904 0.69 137857 79 1013 136818 0.73 137831 80 972 133587 0.72 134559 81 901 128559 0.70 129460 82 871 127668 0.68 128539 83 951 129252 0.73 130203 84 882 124011 0.71 124893 85 967 132584 0.72 133551 86 898 123372 0.72 124270 87 862 122633 0.70 123495 88 836 118704 0.70 119540 89 887 125021 0.70 125908 90 938 119743 0.78 120681 91 875 122193 0.71 123068 92 835 118292 0.70 119127 93 841 114364 0.73 115205 94 830 112861 0.73 113691 95 838 116101 0.72 116939 96 842 110819 0.75 111661 97 865 109182 0.79 110047 98 668 104815 0.63 105483 99 514 0 100.00 514 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 75211 384072 16.38 459283 2 62251 320057 16.28 382308 3 63015 329659 16.05 392674 4 63250 320140 16.50 383390 5 9192 601629 1.50 610821 6 9143 838640 1.08 847783 7 10017 1106308 0.90 1116325 8 9683 1098206 0.87 1107889 9 10481 1031836 1.01 1042317 10 10082 1058715 0.94 1068797 11 9990 1038442 0.95 1048432 12 9698 966812 0.99 976510 13 9699 1000809 0.96 1010508 14 9773 1008426 0.96 1018199 15 9522 1014159 0.93 1023681 16 9078 969694 0.93 978772 17 9530 970000 0.97 979530 18 9591 965084 0.98 974675 19 8617 911272 0.94 919889 20 9632 945456 1.01 955088 21 8940 902382 0.98 911322 22 9217 882709 1.03 891926 23 8776 865342 1.00 874118 24 8553 833396 1.02 841949 25 9121 835844 1.08 844965 26 8589 828516 1.03 837105 27 9132 865444 1.04 874576 28 8785 837607 1.04 846392 29 8665 824186 1.04 832851 30 8857 805063 1.09 813920 31 8520 793877 1.06 802397 32 8143 778414 1.04 786557 33 8655 765828 1.12 774483 34 8342 758158 1.09 766500 35 9017 779421 1.14 788438 36 8281 771366 1.06 779647 37 8337 762296 1.08 770633 38 8500 787116 1.07 795616 39 8266 737124 1.11 745390 40 8259 757276 1.08 765535 41 8109 728277 1.10 736386 42 8277 732513 1.12 740790 43 8151 707046 1.14 715197 44 7651 704867 1.07 712518 45 8097 701516 1.14 709613 46 7702 710611 1.07 718313 47 7410 700486 1.05 707896 48 7601 685662 1.10 693263 49 7280 686406 1.05 693686 50 7247 678248 1.06 685495 51 7402 663420 1.10 670822 52 7012 635893 1.09 642905 53 6930 637168 1.08 644098 54 6778 621302 1.08 628080 55 6903 632025 1.08 638928 56 6631 620239 1.06 626870 57 6509 628301 1.03 634810 58 6194 613209 1.00 619403 59 6319 594725 1.05 601044 60 6214 607212 1.01 613426 61 5938 585219 1.00 591157 62 5714 582996 0.97 588710 63 5671 579444 0.97 585115 64 5647 565015 0.99 570662 65 5432 565942 0.95 571374 66 5711 551963 1.02 557674 67 5370 550430 0.97 555800 68 5546 563532 0.97 569078 69 5588 546626 1.01 552214 70 5293 533887 0.98 539180 71 5358 530506 1.00 535864 72 5331 524532 1.01 529863 73 5254 520225 1.00 525479 74 5060 520351 0.96 525411 75 5073 518912 0.97 523985 76 4999 502282 0.99 507281 77 4999 496718 1.00 501717 78 5103 498472 1.01 503575 79 4943 503166 0.97 508109 80 4967 486882 1.01 491849 81 5038 484569 1.03 489607 82 4985 480380 1.03 485365 83 4653 476575 0.97 481228 84 4871 473113 1.02 477984 85 4537 464890 0.97 469427 86 4414 464317 0.94 468731 87 4692 456984 1.02 461676 88 4433 446446 0.98 450879 89 4540 445109 1.01 449649 90 4382 443599 0.98 447981 91 4295 441287 0.96 445582 92 4252 436097 0.97 440349 93 4080 429558 0.94 433638 94 4062 421499 0.95 425561 95 4163 417539 0.99 421702 96 3943 410586 0.95 414529 97 3884 409514 0.94 413398 98 3260 386493 0.84 389753 99 2448 0 100.00 2448