EPI-119_S31_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 13696158 lines in total Total number of methylation call strings processed: 27392316 Final Cytosine Methylation Report ================================= Total number of C's analysed: 326722000 Total methylated C's in CpG context: 10484577 Total methylated C's in CHG context: 1549852 Total methylated C's in CHH context: 3512575 Total C to T conversions in CpG context: 35522646 Total C to T conversions in CHG context: 66087062 Total C to T conversions in CHH context: 209565288 C methylated in CpG context: 22.8% C methylated in CHG context: 2.3% C methylated in CHH context: 1.6%