CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 256410 411003 38.42 667413 2 233343 432369 35.05 665712 3 203612 380956 34.83 584568 4 197435 288195 40.66 485630 5 186314 238775 43.83 425089 6 184142 205948 47.21 390090 7 202583 198108 50.56 400691 8 95909 227921 29.62 323830 9 86105 207463 29.33 293568 10 86514 197445 30.47 283959 11 89420 201732 30.71 291152 12 85183 207533 29.10 292716 13 84587 213473 28.38 298060 14 78667 211346 27.13 290013 15 75689 214534 26.08 290223 16 70534 210734 25.08 281268 17 66517 203923 24.60 270440 18 68204 207447 24.74 275651 19 67678 210333 24.34 278011 20 68361 212815 24.31 281176 21 69674 215793 24.41 285467 22 67592 213012 24.09 280604 23 66801 209601 24.17 276402 24 65612 210399 23.77 276011 25 63812 208343 23.45 272155 26 64638 204939 23.98 269577 27 63983 211079 23.26 275062 28 66932 209636 24.20 276568 29 64706 215649 23.08 280355 30 63661 211459 23.14 275120 31 64483 207041 23.75 271524 32 63186 203457 23.70 266643 33 63696 205167 23.69 268863 34 64177 204781 23.86 268958 35 63258 203025 23.76 266283 36 62720 206718 23.28 269438 37 61646 203420 23.26 265066 38 60771 203766 22.97 264537 39 62911 204766 23.50 267677 40 64055 203299 23.96 267354 41 63650 203932 23.79 267582 42 63975 207054 23.60 271029 43 63443 205460 23.59 268903 44 63169 203509 23.69 266678 45 63860 203062 23.92 266922 46 64377 205658 23.84 270035 47 64258 202008 24.13 266266 48 63891 203628 23.88 267519 49 65113 202929 24.29 268042 50 62439 206063 23.25 268502 51 63355 205834 23.54 269189 52 63106 212982 22.86 276088 53 61906 203793 23.30 265699 54 60887 202270 23.14 263157 55 60381 197816 23.39 258197 56 60157 194906 23.59 255063 57 61023 198023 23.56 259046 58 61964 197934 23.84 259898 59 62512 198492 23.95 261004 60 60668 199815 23.29 260483 61 62018 197044 23.94 259062 62 60693 199967 23.28 260660 63 59702 197368 23.22 257070 64 59240 197951 23.03 257191 65 59899 193154 23.67 253053 66 60399 194609 23.69 255008 67 59567 191417 23.73 250984 68 58777 190952 23.54 249729 69 57724 189119 23.38 246843 70 57660 187771 23.49 245431 71 56848 186615 23.35 243463 72 57029 185766 23.49 242795 73 55834 184224 23.26 240058 74 55693 182810 23.35 238503 75 53793 181437 22.87 235230 76 54295 179510 23.22 233805 77 54573 179049 23.36 233622 78 54063 179425 23.15 233488 79 53436 177558 23.13 230994 80 52387 176649 22.87 229036 81 51971 175400 22.86 227371 82 50578 173430 22.58 224008 83 52038 174387 22.98 226425 84 51734 175127 22.80 226861 85 51320 172846 22.89 224166 86 50338 169891 22.86 220229 87 49492 169356 22.61 218848 88 49389 169589 22.55 218978 89 48259 165455 22.58 213714 90 48833 165872 22.74 214705 91 48159 164441 22.65 212600 92 47313 163075 22.49 210388 93 46975 163068 22.36 210043 94 47133 160374 22.71 207507 95 46759 159992 22.62 206751 96 46972 162352 22.44 209324 97 44843 155734 22.36 200577 98 42015 147081 22.22 189096 99 32974 115382 22.23 148356 100 43490 146677 22.87 190167 101 39715 144606 21.55 184321 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 359920 417441 46.30 777361 2 216312 373730 36.66 590042 3 87753 367418 19.28 455171 4 39052 379157 9.34 418209 5 22837 352696 6.08 375533 6 18441 348776 5.02 367217 7 13836 432722 3.10 446558 8 5984 467880 1.26 473864 9 4990 431818 1.14 436808 10 4940 411688 1.19 416628 11 5178 413664 1.24 418842 12 4990 419377 1.18 424367 13 4329 398062 1.08 402391 14 4010 398340 1.00 402350 15 3928 407846 0.95 411774 16 3715 408408 0.90 412123 17 3682 403335 0.90 407017 18 3837 403546 0.94 407383 19 3262 402454 0.80 405716 20 3300 422915 0.77 426215 21 3373 430803 0.78 434176 22 3503 423354 0.82 426857 23 3526 428548 0.82 432074 24 3239 433598 0.74 436837 25 3407 419505 0.81 422912 26 3712 423982 0.87 427694 27 3310 428416 0.77 431726 28 3189 427168 0.74 430357 29 3559 430874 0.82 434433 30 3311 435985 0.75 439296 31 3233 427840 0.75 431073 32 3287 429420 0.76 432707 33 3229 429690 0.75 432919 34 3194 421422 0.75 424616 35 3467 427512 0.80 430979 36 3283 429156 0.76 432439 37 3217 417515 0.76 420732 38 3349 423182 0.79 426531 39 3370 422934 0.79 426304 40 3331 419122 0.79 422453 41 3251 419125 0.77 422376 42 3160 422917 0.74 426077 43 3161 418025 0.75 421186 44 3151 424782 0.74 427933 45 3255 422812 0.76 426067 46 3258 419517 0.77 422775 47 3377 419782 0.80 423159 48 3223 428093 0.75 431316 49 3209 418529 0.76 421738 50 3429 420699 0.81 424128 51 3359 424314 0.79 427673 52 3482 422561 0.82 426043 53 3401 421041 0.80 424442 54 3507 427235 0.81 430742 55 3284 418729 0.78 422013 56 3454 424620 0.81 428074 57 3603 425023 0.84 428626 58 4305 419708 1.02 424013 59 3844 422726 0.90 426570 60 3888 427469 0.90 431357 61 3995 421193 0.94 425188 62 4131 423830 0.97 427961 63 4020 420137 0.95 424157 64 4233 419242 1.00 423475 65 4441 414384 1.06 418825 66 4120 410876 0.99 414996 67 4165 400748 1.03 404913 68 4424 404224 1.08 408648 69 4159 404651 1.02 408810 70 4101 398639 1.02 402740 71 4048 397302 1.01 401350 72 4027 397505 1.00 401532 73 4102 390211 1.04 394313 74 4167 388574 1.06 392741 75 4084 390306 1.04 394390 76 3957 381139 1.03 385096 77 4023 382969 1.04 386992 78 3865 380329 1.01 384194 79 3953 372372 1.05 376325 80 3805 371051 1.02 374856 81 3927 368448 1.05 372375 82 3841 363032 1.05 366873 83 4009 369175 1.07 373184 84 3913 368990 1.05 372903 85 4041 360356 1.11 364397 86 4048 364080 1.10 368128 87 3928 362981 1.07 366909 88 3971 354632 1.11 358603 89 4110 353174 1.15 357284 90 4017 355347 1.12 359364 91 4190 348396 1.19 352586 92 4120 349633 1.16 353753 93 4351 346074 1.24 350425 94 4344 340743 1.26 345087 95 4235 340574 1.23 344809 96 4548 338026 1.33 342574 97 4329 308575 1.38 312904 98 3918 284262 1.36 288180 99 2564 182917 1.38 185481 100 2842 186664 1.50 189506 101 5311 302924 1.72 308235 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 322955 479452 40.25 802407 2 152064 501869 23.25 653933 3 69530 636024 9.85 705554 4 54918 697924 7.29 752842 5 48373 829886 5.51 878259 6 38689 919883 4.04 958572 7 34320 1164004 2.86 1198324 8 21081 1250854 1.66 1271935 9 16670 1142178 1.44 1158848 10 16418 1121190 1.44 1137608 11 18673 1122460 1.64 1141133 12 16786 1147656 1.44 1164442 13 17920 1171569 1.51 1189489 14 18628 1205690 1.52 1224318 15 16699 1237310 1.33 1254009 16 16152 1266105 1.26 1282257 17 17910 1271758 1.39 1289668 18 16016 1323063 1.20 1339079 19 16425 1351990 1.20 1368415 20 18193 1394603 1.29 1412796 21 16275 1399717 1.15 1415992 22 16969 1401850 1.20 1418819 23 18522 1404625 1.30 1423147 24 16123 1404024 1.14 1420147 25 17179 1416830 1.20 1434009 26 18151 1430139 1.25 1448290 27 16398 1434789 1.13 1451187 28 16376 1434628 1.13 1451004 29 18505 1431008 1.28 1449513 30 16590 1418581 1.16 1435171 31 16340 1397842 1.16 1414182 32 17506 1408818 1.23 1426324 33 15889 1404709 1.12 1420598 34 17578 1414005 1.23 1431583 35 17904 1403833 1.26 1421737 36 16265 1414706 1.14 1430971 37 16238 1409306 1.14 1425544 38 18139 1414636 1.27 1432775 39 16115 1408891 1.13 1425006 40 16328 1411758 1.14 1428086 41 18377 1419418 1.28 1437795 42 16822 1430140 1.16 1446962 43 17169 1414699 1.20 1431868 44 18011 1422561 1.25 1440572 45 16789 1414298 1.17 1431087 46 16762 1416840 1.17 1433602 47 17893 1413875 1.25 1431768 48 15721 1416061 1.10 1431782 49 16249 1398529 1.15 1414778 50 17638 1393726 1.25 1411364 51 15969 1381485 1.14 1397454 52 16606 1381458 1.19 1398064 53 17615 1374573 1.27 1392188 54 16050 1377087 1.15 1393137 55 16520 1380240 1.18 1396760 56 17519 1376361 1.26 1393880 57 16142 1393270 1.15 1409412 58 17863 1379696 1.28 1397559 59 18002 1394118 1.27 1412120 60 16189 1373233 1.17 1389422 61 17029 1370281 1.23 1387310 62 17659 1359021 1.28 1376680 63 16134 1346374 1.18 1362508 64 17233 1338497 1.27 1355730 65 17259 1339953 1.27 1357212 66 16368 1331123 1.21 1347491 67 16241 1324020 1.21 1340261 68 17347 1318633 1.30 1335980 69 15920 1310711 1.20 1326631 70 15888 1308699 1.20 1324587 71 17319 1302981 1.31 1320300 72 15905 1296248 1.21 1312153 73 16968 1280785 1.31 1297753 74 17051 1280550 1.31 1297601 75 15669 1274185 1.21 1289854 76 15728 1267077 1.23 1282805 77 17055 1258747 1.34 1275802 78 14889 1249024 1.18 1263913 79 15397 1241414 1.23 1256811 80 16505 1235161 1.32 1251666 81 15015 1222401 1.21 1237416 82 15691 1210771 1.28 1226462 83 16327 1211078 1.33 1227405 84 14857 1198880 1.22 1213737 85 14866 1186778 1.24 1201644 86 15674 1180207 1.31 1195881 87 14370 1173065 1.21 1187435 88 14402 1168097 1.22 1182499 89 15758 1158568 1.34 1174326 90 14283 1153240 1.22 1167523 91 14804 1139291 1.28 1154095 92 15498 1138139 1.34 1153637 93 14287 1126308 1.25 1140595 94 14506 1118558 1.28 1133064 95 15466 1107212 1.38 1122678 96 14054 1087376 1.28 1101430 97 14181 1059922 1.32 1074103 98 14296 985522 1.43 999818 99 9161 684536 1.32 693697 100 9969 613049 1.60 623018 101 14048 990266 1.40 1004314 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 145616 202677 41.81 348293 2 128994 183860 41.23 312854 3 140137 206554 40.42 346691 4 131999 231774 36.29 363773 5 57047 287533 16.56 344580 6 32317 155314 17.22 187631 7 30181 168660 15.18 198841 8 32236 157488 16.99 189724 9 29011 140486 17.12 169497 10 32217 154132 17.29 186349 11 33750 149785 18.39 183535 12 33420 144921 18.74 178341 13 34514 142323 19.52 176837 14 34800 144346 19.43 179146 15 33720 133769 20.13 167489 16 33488 130540 20.42 164028 17 39810 142442 21.84 182252 18 38499 134951 22.20 173450 19 36040 129647 21.75 165687 20 34525 127690 21.28 162215 21 36099 126796 22.16 162895 22 35377 128580 21.58 163957 23 33966 124055 21.49 158021 24 32448 118437 21.51 150885 25 35221 125513 21.91 160734 26 33483 120718 21.71 154201 27 35771 121421 22.76 157192 28 33966 118159 22.33 152125 29 34591 121289 22.19 155880 30 32744 112844 22.49 145588 31 31524 114000 21.66 145524 32 31024 108031 22.31 139055 33 33117 109977 23.14 143094 34 32761 112855 22.50 145616 35 38869 117971 24.78 156840 36 33726 108195 23.76 141921 37 33888 110963 23.40 144851 38 31024 106734 22.52 137758 39 31843 104747 23.31 136590 40 33274 106974 23.73 140248 41 30464 103374 22.76 133838 42 30491 104776 22.54 135267 43 31206 103848 23.11 135054 44 29148 100144 22.54 129292 45 34443 104619 24.77 139062 46 28679 95066 23.18 123745 47 29090 95613 23.33 124703 48 28031 95096 22.77 123127 49 27855 96477 22.40 124332 50 26727 90920 22.72 117647 51 27325 89178 23.45 116503 52 27272 91890 22.89 119162 53 27403 87992 23.75 115395 54 26515 88156 23.12 114671 55 26418 87892 23.11 114310 56 25108 86124 22.57 111232 57 25672 83365 23.54 109037 58 25082 84122 22.97 109204 59 24296 80648 23.15 104944 60 25108 81195 23.62 106303 61 22287 78592 22.09 100879 62 22581 78079 22.43 100660 63 23681 76467 23.65 100148 64 23307 76779 23.29 100086 65 22257 72341 23.53 94598 66 23238 74839 23.69 98077 67 21672 74166 22.61 95838 68 22923 74593 23.51 97516 69 21159 70997 22.96 92156 70 21216 71829 22.80 93045 71 21574 67449 24.23 89023 72 20678 67211 23.53 87889 73 20764 68483 23.27 89247 74 18951 66195 22.26 85146 75 19154 65642 22.59 84796 76 19443 64591 23.14 84034 77 18856 64361 22.66 83217 78 19249 64393 23.01 83642 79 18412 63160 22.57 81572 80 17784 61122 22.54 78906 81 17671 60717 22.54 78388 82 17782 60915 22.60 78697 83 17921 59325 23.20 77246 84 18980 62509 23.29 81489 85 17282 58659 22.76 75941 86 16894 58091 22.53 74985 87 16579 56462 22.70 73041 88 16508 55510 22.92 72018 89 17118 56115 23.37 73233 90 16817 54935 23.44 71752 91 16749 54769 23.42 71518 92 15708 53486 22.70 69194 93 15714 54432 22.40 70146 94 15823 53075 22.97 68898 95 15922 53092 23.07 69014 96 15466 52041 22.91 67507 97 15793 53324 22.85 69117 98 14760 47945 23.54 62705 99 12933 0 100.00 12933 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 53241 275724 16.18 328965 2 55013 279538 16.44 334551 3 51777 288751 15.20 340528 4 55951 296117 15.89 352068 5 4213 542077 0.77 546290 6 3050 644156 0.47 647206 7 2074 353392 0.58 355466 8 2027 379450 0.53 381477 9 1754 324102 0.54 325856 10 1880 313366 0.60 315246 11 2357 391606 0.60 393963 12 1902 325353 0.58 327255 13 1967 324132 0.60 326099 14 2030 320065 0.63 322095 15 1945 301727 0.64 303672 16 1744 282753 0.61 284497 17 2013 305137 0.66 307150 18 2145 271148 0.78 273293 19 1895 270633 0.70 272528 20 1949 267272 0.72 269221 21 2197 257941 0.84 260138 22 2083 275019 0.75 277102 23 1950 275865 0.70 277815 24 1857 250404 0.74 252261 25 1940 257633 0.75 259573 26 2038 265205 0.76 267243 27 1984 248800 0.79 250784 28 1845 237125 0.77 238970 29 1944 250332 0.77 252276 30 2110 247316 0.85 249426 31 1933 237169 0.81 239102 32 1882 243281 0.77 245163 33 2022 267818 0.75 269840 34 1913 236419 0.80 238332 35 1999 241564 0.82 243563 36 1938 237513 0.81 239451 37 1810 223276 0.80 225086 38 1862 229980 0.80 231842 39 1797 222905 0.80 224702 40 1856 216395 0.85 218251 41 1974 213096 0.92 215070 42 2033 201069 1.00 203102 43 1996 205996 0.96 207992 44 1912 209912 0.90 211824 45 1870 194329 0.95 196199 46 1835 195444 0.93 197279 47 1878 201185 0.92 203063 48 1850 190985 0.96 192835 49 1913 194788 0.97 196701 50 1927 192609 0.99 194536 51 1910 180138 1.05 182048 52 1957 179432 1.08 181389 53 2484 199634 1.23 202118 54 1788 182465 0.97 184253 55 1794 180052 0.99 181846 56 1682 182027 0.92 183709 57 1735 172231 1.00 173966 58 1398 169812 0.82 171210 59 1483 176562 0.83 178045 60 1307 165247 0.78 166554 61 1188 166915 0.71 168103 62 1236 168744 0.73 169980 63 1227 169830 0.72 171057 64 1116 158293 0.70 159409 65 1118 164290 0.68 165408 66 1052 152695 0.68 153747 67 1097 160836 0.68 161933 68 1091 157503 0.69 158594 69 1073 156406 0.68 157479 70 1095 154684 0.70 155779 71 1126 156641 0.71 157767 72 1040 146966 0.70 148006 73 1020 145439 0.70 146459 74 1018 151600 0.67 152618 75 966 145736 0.66 146702 76 957 139299 0.68 140256 77 1052 145651 0.72 146703 78 956 137904 0.69 138860 79 941 138031 0.68 138972 80 919 134926 0.68 135845 81 902 129634 0.69 130536 82 898 129035 0.69 129933 83 944 130144 0.72 131088 84 874 124917 0.69 125791 85 929 132366 0.70 133295 86 902 124756 0.72 125658 87 856 122722 0.69 123578 88 796 118123 0.67 118919 89 893 124397 0.71 125290 90 915 119933 0.76 120848 91 881 121585 0.72 122466 92 829 118541 0.69 119370 93 888 113934 0.77 114822 94 752 112616 0.66 113368 95 854 116217 0.73 117071 96 838 110285 0.75 111123 97 819 108364 0.75 109183 98 658 104885 0.62 105543 99 547 0 100.00 547 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 77398 391851 16.49 469249 2 63415 329979 16.12 393394 3 64415 336728 16.06 401143 4 64836 329157 16.46 393993 5 9144 620979 1.45 630123 6 9026 865481 1.03 874507 7 10079 1140255 0.88 1150334 8 9750 1133666 0.85 1143416 9 10311 1064034 0.96 1074345 10 9866 1093627 0.89 1103493 11 9977 1072442 0.92 1082419 12 9754 997835 0.97 1007589 13 9465 1030691 0.91 1040156 14 9692 1038519 0.92 1048211 15 9593 1044407 0.91 1054000 16 9064 998635 0.90 1007699 17 9554 999699 0.95 1009253 18 9416 992321 0.94 1001737 19 8684 934943 0.92 943627 20 9425 968315 0.96 977740 21 8954 924494 0.96 933448 22 9023 906875 0.99 915898 23 8790 889373 0.98 898163 24 8351 855532 0.97 863883 25 8997 856870 1.04 865867 26 8506 849967 0.99 858473 27 9308 888058 1.04 897366 28 8589 856709 0.99 865298 29 8505 844646 1.00 853151 30 8677 821429 1.05 830106 31 8603 811769 1.05 820372 32 8063 795453 1.00 803516 33 8603 782199 1.09 790802 34 8180 776254 1.04 784434 35 8914 796160 1.11 805074 36 8042 787741 1.01 795783 37 8144 779841 1.03 787985 38 8564 803171 1.06 811735 39 8155 752303 1.07 760458 40 8110 770790 1.04 778900 41 7941 741504 1.06 749445 42 8027 744826 1.07 752853 43 8126 717934 1.12 726060 44 7703 717214 1.06 724917 45 7980 715880 1.10 723860 46 7606 720488 1.04 728094 47 7478 712191 1.04 719669 48 7599 697741 1.08 705340 49 7341 697391 1.04 704732 50 7236 688264 1.04 695500 51 7395 673442 1.09 680837 52 6995 644069 1.07 651064 53 6870 644493 1.05 651363 54 6812 630306 1.07 637118 55 6636 640127 1.03 646763 56 6707 629069 1.05 635776 57 6547 635483 1.02 642030 58 6369 620155 1.02 626524 59 6123 601311 1.01 607434 60 6105 613375 0.99 619480 61 5826 590707 0.98 596533 62 5787 588502 0.97 594289 63 5504 583826 0.93 589330 64 5590 570351 0.97 575941 65 5479 571088 0.95 576567 66 5508 554058 0.98 559566 67 5334 552982 0.96 558316 68 5375 568456 0.94 573831 69 5430 549804 0.98 555234 70 5177 537971 0.95 543148 71 5141 534152 0.95 539293 72 5295 526821 1.00 532116 73 5133 521201 0.98 526334 74 4896 520761 0.93 525657 75 5057 519744 0.96 524801 76 4701 505979 0.92 510680 77 5024 498253 1.00 503277 78 4940 500277 0.98 505217 79 4883 504580 0.96 509463 80 4837 489037 0.98 493874 81 5000 484270 1.02 489270 82 4874 482085 1.00 486959 83 4687 476223 0.97 480910 84 4642 473078 0.97 477720 85 4560 464393 0.97 468953 86 4409 461681 0.95 466090 87 4477 455213 0.97 459690 88 4296 446033 0.95 450329 89 4292 444225 0.96 448517 90 4546 443231 1.02 447777 91 4299 440847 0.97 445146 92 4080 435913 0.93 439993 93 4133 428927 0.95 433060 94 4006 418499 0.95 422505 95 4163 416057 0.99 420220 96 3921 408074 0.95 411995 97 3802 405816 0.93 409618 98 3254 384572 0.84 387826 99 2283 0 100.00 2283