/gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-113_S30_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/data_for_genome_comparison/EPI-113_S30_L005_R2_001_val_2.fq.gz
Data processed at 21:46 on 2019-02-16
Alignment
Sequence pairs analysed in total
26302191
Paired-end alignments with a unique best hit
15895934
Pairs without alignments under any condition
6555252
Pairs that did not map uniquely
3851005
Genomic sequence context not extractable (edges of chromosomes)
60520
Cytosine Methylation
Total C's analysed
501379330
Methylated C's in CpG context
15070486
Methylated C's in CHG context
2358333
Methylated C's in CHH context
4838697
Methylated C's in Unknown context
157317
Unmethylated C's in CpG context
54855438
Unmethylated C's in CHG context
104623927
Unmethylated C's in CHH context
319632449
Unmethylated C's in Unknown context
2710203
Percentage methylation (CpG context)
21.6%
Percentage methylation (CHG context)
2.2%
Percentage methylation (CHH context)
1.5%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
8086116
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
7749298
original bottom strand
Deduplication
Alignments analysed
15835414
Unique alignments
12870041
Duplicates removed
2965373
Duplicated alignments were found at 1159592 different positions