CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 189116 333609 36.18 522725 2 170925 357633 32.34 528558 3 153069 313226 32.83 466295 4 151168 238564 38.79 389732 5 144322 197778 42.19 342100 6 142163 171063 45.39 313226 7 157887 166555 48.66 324442 8 74894 190747 28.19 265641 9 66695 174176 27.69 240871 10 67160 165233 28.90 232393 11 70559 170092 29.32 240651 12 68550 173428 28.33 241978 13 67130 181522 27.00 248652 14 63723 178951 26.26 242674 15 61438 181622 25.28 243060 16 56463 177853 24.10 234316 17 53195 171619 23.66 224814 18 54360 176016 23.60 230376 19 54392 178896 23.32 233288 20 55079 179695 23.46 234774 21 55837 183123 23.37 238960 22 53805 180856 22.93 234661 23 54183 178225 23.31 232408 24 53097 178500 22.93 231597 25 51280 177423 22.42 228703 26 51750 173708 22.95 225458 27 51688 180174 22.29 231862 28 53675 177438 23.22 231113 29 51935 184633 21.95 236568 30 50978 179720 22.10 230698 31 51816 176824 22.66 228640 32 50168 173035 22.48 223203 33 51067 174770 22.61 225837 34 52048 173549 23.07 225597 35 50497 172347 22.66 222844 36 49979 175011 22.21 224990 37 48789 170174 22.28 218963 38 49154 171353 22.29 220507 39 50547 173548 22.56 224095 40 50643 171833 22.76 222476 41 50929 172823 22.76 223752 42 51523 175716 22.67 227239 43 50644 174886 22.46 225530 44 50719 173489 22.62 224208 45 51173 173315 22.80 224488 46 52067 174520 22.98 226587 47 51391 170845 23.12 222236 48 51120 172034 22.91 223154 49 52636 172033 23.43 224669 50 50068 178253 21.93 228321 51 50732 174894 22.48 225626 52 50933 182752 21.80 233685 53 49926 172298 22.47 222224 54 49589 171360 22.44 220949 55 48926 165639 22.80 214565 56 48851 163944 22.96 212795 57 49946 167573 22.96 217519 58 49919 167612 22.95 217531 59 51176 167065 23.45 218241 60 49135 169197 22.50 218332 61 50100 165965 23.19 216065 62 49064 169510 22.45 218574 63 48329 166173 22.53 214502 64 47902 165196 22.48 213098 65 48771 162718 23.06 211489 66 49087 163673 23.07 212760 67 48053 160174 23.08 208227 68 46934 159417 22.74 206351 69 46401 157977 22.70 204378 70 46480 157924 22.74 204404 71 45663 155875 22.66 201538 72 45525 156013 22.59 201538 73 44857 153289 22.64 198146 74 44363 151785 22.62 196148 75 43773 151345 22.43 195118 76 42889 148917 22.36 191806 77 43767 149073 22.70 192840 78 43684 149231 22.64 192915 79 42556 146571 22.50 189127 80 41745 145704 22.27 187449 81 41180 144702 22.15 185882 82 40100 142996 21.90 183096 83 40846 144281 22.06 185127 84 41113 143475 22.27 184588 85 40776 141582 22.36 182358 86 39219 139131 21.99 178350 87 38255 138594 21.63 176849 88 38336 137768 21.77 176104 89 37877 136312 21.74 174189 90 37958 135565 21.87 173523 91 37697 133032 22.08 170729 92 36496 132902 21.54 169398 93 36641 131486 21.79 168127 94 36494 130127 21.90 166621 95 36217 129732 21.82 165949 96 36406 132362 21.57 168768 97 34751 126275 21.58 161026 98 32726 118744 21.61 151470 99 25467 92680 21.56 118147 100 33341 116625 22.23 149966 101 30511 118814 20.43 149325 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 294095 340976 46.31 635071 2 174432 311055 35.93 485487 3 69773 302358 18.75 372131 4 30429 309866 8.94 340295 5 18103 287403 5.93 305506 6 15078 286167 5.01 301245 7 12087 352297 3.32 364384 8 5180 378796 1.35 383976 9 4240 350509 1.20 354749 10 4303 334059 1.27 338362 11 4619 336450 1.35 341069 12 4718 342370 1.36 347088 13 3982 323912 1.21 327894 14 3539 322196 1.09 325735 15 3431 332784 1.02 336215 16 3035 329412 0.91 332447 17 3077 325254 0.94 328331 18 3165 327035 0.96 330200 19 2760 324977 0.84 327737 20 2969 342768 0.86 345737 21 2860 351288 0.81 354148 22 2961 345303 0.85 348264 23 3006 347078 0.86 350084 24 2802 350863 0.79 353665 25 2757 337652 0.81 340409 26 3189 341677 0.92 344866 27 2965 346591 0.85 349556 28 2695 345653 0.77 348348 29 3062 348773 0.87 351835 30 2804 353581 0.79 356385 31 2784 347227 0.80 350011 32 2767 348244 0.79 351011 33 2790 349011 0.79 351801 34 2687 342546 0.78 345233 35 2909 344989 0.84 347898 36 2825 345821 0.81 348646 37 2697 336437 0.80 339134 38 2832 341026 0.82 343858 39 2724 339551 0.80 342275 40 2710 338621 0.79 341331 41 2761 339055 0.81 341816 42 2713 342211 0.79 344924 43 2702 337722 0.79 340424 44 2731 345925 0.78 348656 45 2687 344334 0.77 347021 46 2652 337844 0.78 340496 47 2754 339812 0.80 342566 48 2807 348485 0.80 351292 49 2707 340241 0.79 342948 50 2980 339805 0.87 342785 51 2800 343830 0.81 346630 52 2779 343884 0.80 346663 53 2923 341130 0.85 344053 54 2933 347279 0.84 350212 55 2953 340658 0.86 343611 56 3214 346455 0.92 349669 57 3111 344515 0.89 347626 58 3559 341362 1.03 344921 59 3361 343920 0.97 347281 60 3314 347717 0.94 351031 61 3423 343014 0.99 346437 62 3529 343712 1.02 347241 63 3635 340196 1.06 343831 64 3570 341647 1.03 345217 65 4185 336827 1.23 341012 66 3776 331136 1.13 334912 67 3634 322378 1.11 326012 68 3883 326297 1.18 330180 69 3595 326246 1.09 329841 70 3522 319891 1.09 323413 71 3595 317716 1.12 321311 72 3525 318829 1.09 322354 73 3526 311872 1.12 315398 74 3510 310344 1.12 313854 75 3510 312108 1.11 315618 76 3474 305268 1.13 308742 77 3569 305335 1.16 308904 78 3420 301322 1.12 304742 79 3442 294967 1.15 298409 80 3380 292179 1.14 295559 81 3415 289623 1.17 293038 82 3370 285565 1.17 288935 83 3406 290081 1.16 293487 84 3522 291100 1.20 294622 85 3286 283839 1.14 287125 86 3512 287783 1.21 291295 87 3497 287308 1.20 290805 88 3520 281182 1.24 284702 89 3542 278946 1.25 282488 90 3383 279276 1.20 282659 91 3583 273261 1.29 276844 92 3570 275057 1.28 278627 93 3812 272134 1.38 275946 94 3596 267555 1.33 271151 95 3751 265423 1.39 269174 96 3787 265036 1.41 268823 97 3741 242753 1.52 246494 98 3331 222792 1.47 226123 99 2196 142974 1.51 145170 100 2593 146874 1.73 149467 101 4781 238016 1.97 242797 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 282780 400993 41.36 683773 2 132833 424939 23.81 557772 3 60931 527775 10.35 588706 4 47315 567754 7.69 615069 5 42519 672563 5.95 715082 6 34008 739753 4.40 773761 7 30225 932682 3.14 962907 8 19144 1005275 1.87 1024419 9 14883 924500 1.58 939383 10 14821 909392 1.60 924213 11 16961 907597 1.83 924558 12 15012 926937 1.59 941949 13 16266 946872 1.69 963138 14 17243 974693 1.74 991936 15 15177 1002567 1.49 1017744 16 14694 1028459 1.41 1043153 17 16603 1029237 1.59 1045840 18 14470 1073193 1.33 1087663 19 14761 1096534 1.33 1111295 20 16766 1132648 1.46 1149414 21 14681 1136966 1.27 1151647 22 15723 1138487 1.36 1154210 23 16942 1138107 1.47 1155049 24 14765 1140665 1.28 1155430 25 15691 1151876 1.34 1167567 26 16497 1164979 1.40 1181476 27 15072 1172458 1.27 1187530 28 14666 1171392 1.24 1186058 29 16619 1166800 1.40 1183419 30 14475 1155864 1.24 1170339 31 14558 1138302 1.26 1152860 32 16179 1148575 1.39 1164754 33 14576 1142883 1.26 1157459 34 15793 1154606 1.35 1170399 35 16368 1143079 1.41 1159447 36 14921 1154214 1.28 1169135 37 14272 1148181 1.23 1162453 38 16678 1156512 1.42 1173190 39 14568 1151871 1.25 1166439 40 14856 1155838 1.27 1170694 41 16677 1160217 1.42 1176894 42 15003 1177252 1.26 1192255 43 15669 1162176 1.33 1177845 44 16284 1170368 1.37 1186652 45 15064 1159233 1.28 1174297 46 15088 1166290 1.28 1181378 47 16105 1156615 1.37 1172720 48 14539 1163815 1.23 1178354 49 14703 1145579 1.27 1160282 50 15685 1143471 1.35 1159156 51 14232 1130032 1.24 1144264 52 14981 1127664 1.31 1142645 53 15974 1121144 1.40 1137118 54 14434 1126118 1.27 1140552 55 14983 1128589 1.31 1143572 56 16010 1124096 1.40 1140106 57 14275 1143380 1.23 1157655 58 16206 1128973 1.42 1145179 59 16430 1141751 1.42 1158181 60 14589 1123886 1.28 1138475 61 15192 1120089 1.34 1135281 62 15974 1109675 1.42 1125649 63 14569 1095922 1.31 1110491 64 15447 1089030 1.40 1104477 65 15879 1086531 1.44 1102410 66 14436 1078537 1.32 1092973 67 14736 1073354 1.35 1088090 68 15641 1065295 1.45 1080936 69 14012 1057311 1.31 1071323 70 14016 1053647 1.31 1067663 71 15437 1048026 1.45 1063463 72 13959 1046230 1.32 1060189 73 14604 1031708 1.40 1046312 74 15090 1028576 1.45 1043666 75 13669 1023243 1.32 1036912 76 13842 1015112 1.35 1028954 77 15398 1004932 1.51 1020330 78 13087 996894 1.30 1009981 79 13453 989518 1.34 1002971 80 14612 983824 1.46 998436 81 13211 972179 1.34 985390 82 13929 962464 1.43 976393 83 14566 964927 1.49 979493 84 13271 951646 1.38 964917 85 12788 940903 1.34 953691 86 13885 930353 1.47 944238 87 12625 927256 1.34 939881 88 12621 918909 1.35 931530 89 13599 911306 1.47 924905 90 12431 905375 1.35 917806 91 12688 893402 1.40 906090 92 13223 893054 1.46 906277 93 12319 883207 1.38 895526 94 12408 875294 1.40 887702 95 13497 864138 1.54 877635 96 12080 847566 1.41 859646 97 12273 825826 1.46 838099 98 12385 770074 1.58 782459 99 8167 534611 1.50 542778 100 8684 481556 1.77 490240 101 12628 775382 1.60 788010 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 109065 158391 40.78 267456 2 99026 143196 40.88 242222 3 106601 161564 39.75 268165 4 100376 179158 35.91 279534 5 42836 221783 16.19 264619 6 24505 121164 16.82 145669 7 22185 131730 14.41 153915 8 23444 121963 16.12 145407 9 21019 108648 16.21 129667 10 23817 120481 16.51 144298 11 25812 119456 17.77 145268 12 24596 114648 17.66 139244 13 25136 111383 18.41 136519 14 26808 113513 19.10 140321 15 25886 105262 19.74 131148 16 24873 101550 19.67 126423 17 30794 112365 21.51 143159 18 29432 107307 21.52 136739 19 28445 100908 21.99 129353 20 26273 100960 20.65 127233 21 27804 99923 21.77 127727 22 26631 101184 20.84 127815 23 25627 97013 20.90 122640 24 24266 90951 21.06 115217 25 26625 96728 21.58 123353 26 24788 93265 21.00 118053 27 26896 95120 22.04 122016 28 25566 91053 21.92 116619 29 25528 93485 21.45 119013 30 24850 87907 22.04 112757 31 23591 89651 20.83 113242 32 23007 83059 21.69 106066 33 24657 85274 22.43 109931 34 24105 88508 21.41 112613 35 28788 91402 23.95 120190 36 24810 82424 23.14 107234 37 24945 85943 22.50 110888 38 22607 83072 21.39 105679 39 23724 81345 22.58 105069 40 25147 82906 23.27 108053 41 23361 79907 22.62 103268 42 23060 82802 21.78 105862 43 23519 79259 22.88 102778 44 21689 76610 22.06 98299 45 25708 83650 23.51 109358 46 21264 73345 22.48 94609 47 21923 75151 22.58 97074 48 20939 72581 22.39 93520 49 20429 76072 21.17 96501 50 19717 69080 22.20 88797 51 19902 68255 22.58 88157 52 20418 70706 22.41 91124 53 20950 69017 23.29 89967 54 19488 69208 21.97 88696 55 19532 67104 22.54 86636 56 18107 66427 21.42 84534 57 18753 62915 22.96 81668 58 18516 62927 22.73 81443 59 18253 61070 23.01 79323 60 18496 63316 22.61 81812 61 16397 59954 21.48 76351 62 16573 59079 21.91 75652 63 17780 58159 23.41 75939 64 17145 57077 23.10 74222 65 16243 54592 22.93 70835 66 17286 57091 23.24 74377 67 15945 56156 22.11 72101 68 16667 56534 22.77 73201 69 15632 53089 22.75 68721 70 15130 53994 21.89 69124 71 15631 50420 23.67 66051 72 15013 50144 23.04 65157 73 14915 51512 22.45 66427 74 13770 49161 21.88 62931 75 13731 48332 22.12 62063 76 13847 47608 22.53 61455 77 13647 47372 22.37 61019 78 13882 47393 22.66 61275 79 13099 46571 21.95 59670 80 12817 45426 22.01 58243 81 12710 44511 22.21 57221 82 12897 44624 22.42 57521 83 12815 42671 23.10 55486 84 13174 45233 22.56 58407 85 12036 43343 21.73 55379 86 11913 42882 21.74 54795 87 12123 41696 22.53 53819 88 11724 40962 22.25 52686 89 12311 41655 22.81 53966 90 12254 40975 23.02 53229 91 11815 40062 22.78 51877 92 11291 39727 22.13 51018 93 11211 40014 21.89 51225 94 11646 39415 22.81 51061 95 11534 39238 22.72 50772 96 11232 38717 22.49 49949 97 11596 39109 22.87 50705 98 10460 36428 22.31 46888 99 9263 0 100.00 9263 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 41431 214831 16.17 256262 2 42210 218292 16.20 260502 3 40683 221955 15.49 262638 4 43401 231510 15.79 274911 5 3748 412912 0.90 416660 6 2473 492647 0.50 495120 7 1685 268574 0.62 270259 8 1638 292446 0.56 294084 9 1385 249122 0.55 250507 10 1438 239385 0.60 240823 11 2002 303576 0.66 305578 12 1634 246802 0.66 248436 13 1598 250307 0.63 251905 14 1620 248474 0.65 250094 15 1588 230837 0.68 232425 16 1430 217497 0.65 218927 17 1743 234624 0.74 236367 18 1886 206339 0.91 208225 19 1622 203622 0.79 205244 20 1623 202228 0.80 203851 21 2004 195387 1.02 197391 22 1754 211565 0.82 213319 23 1692 207967 0.81 209659 24 1626 190039 0.85 191665 25 1586 193164 0.81 194750 26 1677 200932 0.83 202609 27 1652 187093 0.88 188745 28 1414 176608 0.79 178022 29 1592 188840 0.84 190432 30 1754 183594 0.95 185348 31 1543 177590 0.86 179133 32 1452 182123 0.79 183575 33 1543 202081 0.76 203624 34 1582 177612 0.88 179194 35 1660 182049 0.90 183709 36 1533 178722 0.85 180255 37 1421 167001 0.84 168422 38 1546 175307 0.87 176853 39 1544 168139 0.91 169683 40 1556 162809 0.95 164365 41 1593 158356 1.00 159949 42 1656 147985 1.11 149641 43 1836 154769 1.17 156605 44 1486 156468 0.94 157954 45 1458 142333 1.01 143791 46 1495 144634 1.02 146129 47 1623 150423 1.07 152046 48 1554 142557 1.08 144111 49 1517 146932 1.02 148449 50 1596 144544 1.09 146140 51 1493 132003 1.12 133496 52 1705 130904 1.29 132609 53 2021 147130 1.36 149151 54 1550 135929 1.13 137479 55 1537 135804 1.12 137341 56 1526 135561 1.11 137087 57 1639 127400 1.27 129039 58 1290 123974 1.03 125264 59 1186 128586 0.91 129772 60 1108 123173 0.89 124281 61 935 123207 0.75 124142 62 919 124519 0.73 125438 63 948 125575 0.75 126523 64 913 114935 0.79 115848 65 985 120299 0.81 121284 66 868 111401 0.77 112269 67 933 119054 0.78 119987 68 855 115890 0.73 116745 69 850 114695 0.74 115545 70 781 113193 0.69 113974 71 864 114267 0.75 115131 72 853 106227 0.80 107080 73 798 107125 0.74 107923 74 778 112296 0.69 113074 75 820 105569 0.77 106389 76 725 101427 0.71 102152 77 838 107659 0.77 108497 78 768 101335 0.75 102103 79 732 99890 0.73 100622 80 773 98447 0.78 99220 81 703 94478 0.74 95181 82 695 94895 0.73 95590 83 713 95248 0.74 95961 84 735 90531 0.81 91266 85 740 98254 0.75 98994 86 662 91248 0.72 91910 87 690 89179 0.77 89869 88 661 86108 0.76 86769 89 789 92975 0.84 93764 90 832 88579 0.93 89411 91 665 88471 0.75 89136 92 631 87227 0.72 87858 93 686 83569 0.81 84255 94 619 82120 0.75 82739 95 747 84842 0.87 85589 96 739 83031 0.88 83770 97 636 79512 0.79 80148 98 545 76091 0.71 76636 99 425 0 100.00 425 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 63911 322294 16.55 386205 2 52575 270956 16.25 323531 3 53638 275834 16.28 329472 4 52314 264021 16.54 316335 5 8266 498198 1.63 506464 6 8014 675487 1.17 683501 7 8426 879090 0.95 887516 8 8358 871177 0.95 879535 9 9206 817930 1.11 827136 10 8355 846288 0.98 854643 11 8800 820979 1.06 829779 12 8532 761543 1.11 770075 13 8246 790261 1.03 798507 14 8467 799996 1.05 808463 15 8395 803447 1.03 811842 16 7563 765556 0.98 773119 17 8357 767917 1.08 776274 18 8188 759736 1.07 767924 19 7469 716603 1.03 724072 20 8341 747801 1.10 756142 21 8226 715800 1.14 724026 22 8095 692877 1.15 700972 23 7674 675369 1.12 683043 24 7298 647999 1.11 655297 25 7855 652705 1.19 660560 26 7508 648181 1.15 655689 27 8273 682755 1.20 691028 28 7668 657215 1.15 664883 29 7533 645379 1.15 652912 30 7815 629008 1.23 636823 31 7470 622327 1.19 629797 32 6903 607877 1.12 614780 33 7574 591724 1.26 599298 34 7330 587837 1.23 595167 35 7876 604676 1.29 612552 36 7153 598058 1.18 605211 37 6850 592770 1.14 599620 38 7476 608656 1.21 616132 39 7508 568231 1.30 575739 40 7032 581506 1.19 588538 41 7178 563611 1.26 570789 42 7385 564955 1.29 572340 43 7124 544803 1.29 551927 44 6573 541764 1.20 548337 45 7152 534979 1.32 542131 46 6445 545660 1.17 552105 47 6467 536071 1.19 542538 48 6596 522761 1.25 529357 49 6218 523752 1.17 529970 50 6430 518259 1.23 524689 51 6501 504522 1.27 511023 52 6165 479174 1.27 485339 53 6120 480044 1.26 486164 54 5858 465543 1.24 471401 55 5841 475463 1.21 481304 56 5666 471050 1.19 476716 57 5825 474093 1.21 479918 58 5499 465033 1.17 470532 59 5244 444426 1.17 449670 60 5367 456040 1.16 461407 61 5230 438492 1.18 443722 62 4879 436739 1.10 441618 63 4894 433510 1.12 438404 64 4838 422985 1.13 427823 65 4520 424201 1.05 428721 66 4815 410476 1.16 415291 67 4380 409272 1.06 413652 68 4706 421470 1.10 426176 69 4718 406777 1.15 411495 70 4455 396340 1.11 400795 71 4404 392521 1.11 396925 72 4464 387922 1.14 392386 73 4282 384753 1.10 389035 74 4068 381799 1.05 385867 75 4104 380807 1.07 384911 76 4093 368538 1.10 372631 77 4304 362179 1.17 366483 78 4342 367647 1.17 371989 79 4123 369717 1.10 373840 80 4059 356073 1.13 360132 81 4183 355675 1.16 359858 82 3985 352333 1.12 356318 83 3848 349064 1.09 352912 84 4082 345299 1.17 349381 85 3787 338760 1.11 342547 86 3633 335409 1.07 339042 87 3761 329756 1.13 333517 88 3588 323251 1.10 326839 89 3780 321317 1.16 325097 90 3768 323221 1.15 326989 91 3595 320647 1.11 324242 92 3317 317803 1.03 321120 93 3529 311872 1.12 315401 94 3310 303606 1.08 306916 95 3275 303165 1.07 306440 96 3209 297985 1.07 301194 97 3130 296944 1.04 300074 98 2754 280560 0.97 283314 99 2016 0 100.00 2016