EPI-44_S41_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5151783 lines in total Total number of methylation call strings processed: 10303566 Final Cytosine Methylation Report ================================= Total number of C's analysed: 111476725 Total methylated C's in CpG context: 4688440 Total methylated C's in CHG context: 693518 Total methylated C's in CHH context: 4172951 Total C to T conversions in CpG context: 10466395 Total C to T conversions in CHG context: 22907665 Total C to T conversions in CHH context: 68547756 C methylated in CpG context: 30.9% C methylated in CHG context: 2.9% C methylated in CHH context: 5.7%