CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 82514 119772 40.79 202286 2 83260 128772 39.27 212032 3 78993 114959 40.73 193952 4 82828 93696 46.92 176524 5 80591 80555 50.01 161146 6 82571 68928 54.50 151499 7 93999 70587 57.11 164586 8 43716 77898 35.95 121614 9 38280 70677 35.13 108957 10 38162 69465 35.46 107627 11 40660 72352 35.98 113012 12 39213 73353 34.84 112566 13 38454 76371 33.49 114825 14 37135 75790 32.88 112925 15 36752 76811 32.36 113563 16 34285 76462 30.96 110747 17 32490 74554 30.35 107044 18 33921 75826 30.91 109747 19 32430 76676 29.72 109106 20 32312 77124 29.53 109436 21 32708 77768 29.61 110476 22 32076 76643 29.50 108719 23 32068 76262 29.60 108330 24 31492 75839 29.34 107331 25 30864 75385 29.05 106249 26 31681 75188 29.64 106869 27 31129 77168 28.74 108297 28 32291 76342 29.72 108633 29 31257 77524 28.73 108781 30 30980 76611 28.79 107591 31 31366 75360 29.39 106726 32 30620 74202 29.21 104822 33 30915 74857 29.23 105772 34 31886 75088 29.81 106974 35 30997 74680 29.33 105677 36 30691 76506 28.63 107197 37 29639 74057 28.58 103696 38 29475 73850 28.53 103325 39 30417 74995 28.86 105412 40 30203 74119 28.95 104322 41 29930 73886 28.83 103816 42 30777 75425 28.98 106202 43 29635 74169 28.55 103804 44 29578 73780 28.62 103358 45 30012 73438 29.01 103450 46 30157 74714 28.76 104871 47 29910 72825 29.11 102735 48 29858 73166 28.98 103024 49 30651 73222 29.51 103873 50 29583 73829 28.61 103412 51 29770 73604 28.80 103374 52 29843 76766 27.99 106609 53 28974 72586 28.53 101560 54 28873 73133 28.31 102006 55 28368 71133 28.51 99501 56 28648 70642 28.85 99290 57 29400 71016 29.28 100416 58 30002 72449 29.28 102451 59 30149 71007 29.80 101156 60 29625 72123 29.12 101748 61 30391 70547 30.11 100938 62 28890 70999 28.92 99889 63 28644 70447 28.91 99091 64 28596 69821 29.06 98417 65 28759 68950 29.43 97709 66 29198 69782 29.50 98980 67 28513 67856 29.59 96369 68 27805 67976 29.03 95781 69 27510 67073 29.09 94583 70 27130 66474 28.98 93604 71 26634 65172 29.01 91806 72 26445 65069 28.90 91514 73 26366 64036 29.17 90402 74 26295 63054 29.43 89349 75 25417 63301 28.65 88718 76 25363 62794 28.77 88157 77 25970 62014 29.52 87984 78 25504 62297 29.05 87801 79 25001 61720 28.83 86721 80 24352 61010 28.53 85362 81 24006 60114 28.54 84120 82 23461 59737 28.20 83198 83 24148 60594 28.50 84742 84 23888 60592 28.28 84480 85 23618 59031 28.58 82649 86 23331 58333 28.57 81664 87 22511 57699 28.07 80210 88 22513 57518 28.13 80031 89 22264 56691 28.20 78955 90 22057 56656 28.02 78713 91 21671 55605 28.04 77276 92 21422 55362 27.90 76784 93 21235 55174 27.79 76409 94 21278 54779 27.98 76057 95 20812 53922 27.85 74734 96 21179 54712 27.91 75891 97 20466 52485 28.05 72951 98 18984 48980 27.93 67964 99 15167 39501 27.74 54668 100 19341 49037 28.29 68378 101 18147 47883 27.48 66030 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 118700 159437 42.68 278137 2 70273 151025 31.75 221298 3 28056 147898 15.95 175954 4 14309 147817 8.83 162126 5 10099 133816 7.02 143915 6 11455 131491 8.01 142946 7 6813 162731 4.02 169544 8 3491 175309 1.95 178800 9 2781 167268 1.64 170049 10 2765 162142 1.68 164907 11 3201 164200 1.91 167401 12 2937 165610 1.74 168547 13 2909 159780 1.79 162689 14 2696 159052 1.67 161748 15 2827 163233 1.70 166060 16 2492 165002 1.49 167494 17 3201 162908 1.93 166109 18 2750 160541 1.68 163291 19 2291 160684 1.41 162975 20 2626 170687 1.52 173313 21 2484 173907 1.41 176391 22 2604 168822 1.52 171426 23 2628 171946 1.51 174574 24 2484 173102 1.41 175586 25 2644 166828 1.56 169472 26 3775 169119 2.18 172894 27 2520 170678 1.45 173198 28 2370 171224 1.37 173594 29 3426 173152 1.94 176578 30 2355 173436 1.34 175791 31 2404 169168 1.40 171572 32 2382 170944 1.37 173326 33 2588 172174 1.48 174762 34 2486 168966 1.45 171452 35 3322 170296 1.91 173618 36 2590 170737 1.49 173327 37 2400 165270 1.43 167670 38 3045 168505 1.77 171550 39 2489 166815 1.47 169304 40 2383 167268 1.40 169651 41 2345 168136 1.38 170481 42 2192 167678 1.29 169870 43 2310 164070 1.39 166380 44 2258 168187 1.32 170445 45 2315 166512 1.37 168827 46 2198 165542 1.31 167740 47 2536 163904 1.52 166440 48 2174 168885 1.27 171059 49 2280 164434 1.37 166714 50 2648 162714 1.60 165362 51 2452 166294 1.45 168746 52 2297 165853 1.37 168150 53 2477 163880 1.49 166357 54 2596 166161 1.54 168757 55 2483 163460 1.50 165943 56 2595 164904 1.55 167499 57 2868 164207 1.72 167075 58 2522 162203 1.53 164725 59 2660 163228 1.60 165888 60 2527 163574 1.52 166101 61 2492 160906 1.53 163398 62 2768 161491 1.69 164259 63 2847 160155 1.75 163002 64 2758 158677 1.71 161435 65 3592 159422 2.20 163014 66 2694 155805 1.70 158499 67 2729 151734 1.77 154463 68 3233 152854 2.07 156087 69 2476 152288 1.60 154764 70 2432 147920 1.62 150352 71 2470 148483 1.64 150953 72 2501 146969 1.67 149470 73 2538 146046 1.71 148584 74 3011 145408 2.03 148419 75 2411 145601 1.63 148012 76 2406 142070 1.67 144476 77 3058 143157 2.09 146215 78 2426 138801 1.72 141227 79 2439 136695 1.75 139134 80 2468 135529 1.79 137997 81 2470 134678 1.80 137148 82 2274 131685 1.70 133959 83 2370 135109 1.72 137479 84 2274 134483 1.66 136757 85 2215 132184 1.65 134399 86 2448 131859 1.82 134307 87 2283 132645 1.69 134928 88 2672 128563 2.04 131235 89 2462 128541 1.88 131003 90 2290 127615 1.76 129905 91 2424 125904 1.89 128328 92 2338 126124 1.82 128462 93 2573 124213 2.03 126786 94 2351 122232 1.89 124583 95 2571 121803 2.07 124374 96 2559 120687 2.08 123246 97 2528 109713 2.25 112241 98 2330 100212 2.27 102542 99 1370 65598 2.05 66968 100 1943 66391 2.84 68334 101 3400 106572 3.09 109972 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 155209 220925 41.26 376134 2 95926 234411 29.04 330337 3 58136 271595 17.63 329731 4 55394 283799 16.33 339193 5 51174 331297 13.38 382471 6 45734 362185 11.21 407919 7 33094 457871 6.74 490965 8 28621 495308 5.46 523929 9 22304 458760 4.64 481064 10 22532 446400 4.80 468932 11 30279 447864 6.33 478143 12 25638 449598 5.39 475236 13 29699 459419 6.07 489118 14 32113 469994 6.40 502107 15 27567 483124 5.40 510691 16 26876 488594 5.21 515470 17 30118 491123 5.78 521241 18 25309 508411 4.74 533720 19 25862 516245 4.77 542107 20 29801 535693 5.27 565494 21 26180 534768 4.67 560948 22 30015 536305 5.30 566320 23 30844 532951 5.47 563795 24 27040 531629 4.84 558669 25 29283 532475 5.21 561758 26 30961 538598 5.44 569559 27 27498 542512 4.82 570010 28 26093 544661 4.57 570754 29 31045 542194 5.42 573239 30 26718 535423 4.75 562141 31 27088 529393 4.87 556481 32 28251 531338 5.05 559589 33 26156 531221 4.69 557377 34 31426 534192 5.56 565618 35 30665 530053 5.47 560718 36 26241 534602 4.68 560843 37 26174 529590 4.71 555764 38 31688 533391 5.61 565079 39 26635 528623 4.80 555258 40 26739 527405 4.83 554144 41 31145 529357 5.56 560502 42 28178 533847 5.01 562025 43 30036 527413 5.39 557449 44 29678 531618 5.29 561296 45 28338 525291 5.12 553629 46 26966 525790 4.88 552756 47 29008 522275 5.26 551283 48 25078 523277 4.57 548355 49 25695 517912 4.73 543607 50 29765 514624 5.47 544389 51 25425 509394 4.75 534819 52 27635 507265 5.17 534900 53 29220 505658 5.46 534878 54 25310 506713 4.76 532023 55 25294 504101 4.78 529395 56 28474 500562 5.38 529036 57 25209 503301 4.77 528510 58 25275 501227 4.80 526502 59 28646 503421 5.38 532067 60 24691 495657 4.75 520348 61 27333 491480 5.27 518813 62 28094 486852 5.46 514946 63 24249 480786 4.80 505035 64 26039 478813 5.16 504852 65 26288 475062 5.24 501350 66 23917 470961 4.83 494878 67 23726 466297 4.84 490023 68 25603 462139 5.25 487742 69 23823 460170 4.92 483993 70 24056 456427 5.01 480483 71 25833 453857 5.39 479690 72 23319 452123 4.90 475442 73 26798 444976 5.68 471774 74 26324 444316 5.59 470640 75 23413 439507 5.06 462920 76 23748 437612 5.15 461360 77 27451 432976 5.96 460427 78 22214 427916 4.94 450130 79 23675 424824 5.28 448499 80 26100 422513 5.82 448613 81 24533 416010 5.57 440543 82 25519 413572 5.81 439091 83 26075 415286 5.91 441361 84 23757 407004 5.52 430761 85 22501 402161 5.30 424662 86 23686 396788 5.63 420474 87 21031 395760 5.05 416791 88 21749 389830 5.28 411579 89 24433 388335 5.92 412768 90 21248 386169 5.22 407417 91 22397 380742 5.56 403139 92 23896 380131 5.91 404027 93 21979 375640 5.53 397619 94 21355 372471 5.42 393826 95 23334 368799 5.95 392133 96 19757 360256 5.20 380013 97 20417 350980 5.50 371397 98 21313 325695 6.14 347008 99 12916 228207 5.36 241123 100 14462 204667 6.60 219129 101 20447 323762 5.94 344209 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 78013 82078 48.73 160091 2 66632 66679 49.98 133311 3 70597 75070 48.46 145667 4 63369 81367 43.78 144736 5 28090 102450 21.52 130540 6 18084 57542 23.91 75626 7 15092 61407 19.73 76499 8 16121 56789 22.11 72910 9 13725 48103 22.20 61828 10 15414 53516 22.36 68930 11 16343 53558 23.38 69901 12 15274 51004 23.05 66278 13 16052 48951 24.69 65003 14 16572 51216 24.45 67788 15 15953 45758 25.85 61711 16 14809 43334 25.47 58143 17 18364 49026 27.25 67390 18 17963 46696 27.78 64659 19 17160 46043 27.15 63203 20 15660 43952 26.27 59612 21 16188 42904 27.39 59092 22 16621 44254 27.30 60875 23 15347 42389 26.58 57736 24 14549 40806 26.28 55355 25 16556 42588 27.99 59144 26 15106 40621 27.11 55727 27 15990 40700 28.21 56690 28 14763 38571 27.68 53334 29 15544 40747 27.61 56291 30 14704 37349 28.25 52053 31 14097 38436 26.83 52533 32 13607 36337 27.24 49944 33 15672 36817 29.86 52489 34 14854 38855 27.66 53709 35 18366 42926 29.96 61292 36 14526 37148 28.11 51674 37 15222 38644 28.26 53866 38 13662 34999 28.08 48661 39 14131 35503 28.47 49634 40 15729 35462 30.73 51191 41 13537 34020 28.46 47557 42 13520 36588 26.98 50108 43 13352 35165 27.52 48517 44 12775 33854 27.40 46629 45 15967 37529 29.85 53496 46 12457 31504 28.34 43961 47 12591 31903 28.30 44494 48 12732 31344 28.89 44076 49 12185 32987 26.97 45172 50 11527 29869 27.85 41396 51 11554 29341 28.25 40895 52 12118 30451 28.47 42569 53 11889 29402 28.79 41291 54 11647 29366 28.40 41013 55 11763 28931 28.91 40694 56 10813 28228 27.70 39041 57 11318 28512 28.42 39830 58 10975 27978 28.17 38953 59 10137 26330 27.80 36467 60 10738 27082 28.39 37820 61 9618 25570 27.33 35188 62 9687 24631 28.23 34318 63 10502 25238 29.38 35740 64 9780 25096 28.04 34876 65 9582 23803 28.70 33385 66 10262 24789 29.28 35051 67 9399 25111 27.24 34510 68 10597 26314 28.71 36911 69 9419 23895 28.27 33314 70 9102 23635 27.80 32737 71 9463 22112 29.97 31575 72 8687 21603 28.68 30290 73 8720 22196 28.21 30916 74 8028 21421 27.26 29449 75 8068 21849 26.97 29917 76 8241 21132 28.06 29373 77 8132 20994 27.92 29126 78 8036 21013 27.66 29049 79 7728 20185 27.69 27913 80 7589 20080 27.43 27669 81 7610 19892 27.67 27502 82 7720 20123 27.73 27843 83 7796 19022 29.07 26818 84 8671 21335 28.90 30006 85 7327 19549 27.26 26876 86 7150 18959 27.39 26109 87 7173 18978 27.43 26151 88 7136 18653 27.67 25789 89 7680 18878 28.92 26558 90 7528 18531 28.89 26059 91 6820 18252 27.20 25072 92 6736 17648 27.62 24384 93 6751 17444 27.90 24195 94 7189 17668 28.92 24857 95 6811 17302 28.25 24113 96 6644 17108 27.97 23752 97 7555 18534 28.96 26089 98 6390 16091 28.42 22481 99 5651 0 100.00 5651 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 20754 97185 17.60 117939 2 19280 93168 17.15 112448 3 18074 98221 15.54 116295 4 19179 109236 14.94 128415 5 2853 194229 1.45 197082 6 2342 237176 0.98 239518 7 1590 137648 1.14 139238 8 1570 146643 1.06 148213 9 1541 118050 1.29 119591 10 1456 113952 1.26 115408 11 2630 161882 1.60 164512 12 1529 124337 1.21 125866 13 1398 122792 1.13 124190 14 1407 116312 1.20 117719 15 1546 113666 1.34 115212 16 1405 104902 1.32 106307 17 1587 113350 1.38 114937 18 2260 99866 2.21 102126 19 1515 101250 1.47 102765 20 1678 98732 1.67 100410 21 2508 92221 2.65 94729 22 1712 105299 1.60 107011 23 1753 103705 1.66 105458 24 1351 91013 1.46 92364 25 1504 93724 1.58 95228 26 1756 98225 1.76 99981 27 1508 91339 1.62 92847 28 1556 86955 1.76 88511 29 1532 95027 1.59 96559 30 1581 90672 1.71 92253 31 1390 85958 1.59 87348 32 1394 87695 1.56 89089 33 1653 107675 1.51 109328 34 1471 85148 1.70 86619 35 1484 90045 1.62 91529 36 1480 89542 1.63 91022 37 1333 82009 1.60 83342 38 1569 88357 1.74 89926 39 1527 80695 1.86 82222 40 1346 80176 1.65 81522 41 1462 77081 1.86 78543 42 1515 72093 2.06 73608 43 1661 76642 2.12 78303 44 1424 74581 1.87 76005 45 1320 67732 1.91 69052 46 1392 69126 1.97 70518 47 1572 71746 2.14 73318 48 1375 67706 1.99 69081 49 1381 71242 1.90 72623 50 1573 68105 2.26 69678 51 1358 63270 2.10 64628 52 1456 63302 2.25 64758 53 1629 70548 2.26 72177 54 1338 63718 2.06 65056 55 1279 64173 1.95 65452 56 1317 61943 2.08 63260 57 1797 60729 2.87 62526 58 1281 60249 2.08 61530 59 990 61452 1.59 62442 60 1236 58149 2.08 59385 61 799 58494 1.35 59293 62 857 60855 1.39 61712 63 730 60756 1.19 61486 64 679 54604 1.23 55283 65 787 58599 1.33 59386 66 724 52451 1.36 53175 67 689 58868 1.16 59557 68 741 56646 1.29 57387 69 713 54743 1.29 55456 70 618 55001 1.11 55619 71 705 56536 1.23 57241 72 671 51291 1.29 51962 73 591 51420 1.14 52011 74 632 52689 1.19 53321 75 665 50446 1.30 51111 76 580 48845 1.17 49425 77 712 52086 1.35 52798 78 682 49225 1.37 49907 79 612 49227 1.23 49839 80 578 47253 1.21 47831 81 659 45914 1.41 46573 82 571 45251 1.25 45822 83 626 46093 1.34 46719 84 563 44298 1.25 44861 85 630 50410 1.23 51040 86 662 44637 1.46 45299 87 642 44013 1.44 44655 88 539 42350 1.26 42889 89 725 45258 1.58 45983 90 667 44608 1.47 45275 91 564 45945 1.21 46509 92 560 42755 1.29 43315 93 597 41667 1.41 42264 94 630 40437 1.53 41067 95 568 41391 1.35 41959 96 801 39328 2.00 40129 97 598 39384 1.50 39982 98 563 38591 1.44 39154 99 552 0 100.00 552 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 43505 121503 26.37 165008 2 39681 94722 29.52 134403 3 41414 99491 29.39 140905 4 41022 101120 28.86 142142 5 14603 209884 6.51 224487 6 17774 287602 5.82 305376 7 18005 388550 4.43 406555 8 15427 383900 3.86 399327 9 17928 359628 4.75 377556 10 16394 370113 4.24 386507 11 16878 366476 4.40 383354 12 16285 344855 4.51 361140 13 15448 357699 4.14 373147 14 16429 362562 4.33 378991 15 14905 378380 3.79 393285 16 13557 360550 3.62 374107 17 15988 362392 4.23 378380 18 15809 358044 4.23 373853 19 13309 329154 3.89 342463 20 16880 355247 4.54 372127 21 15333 329008 4.45 344341 22 16428 317821 4.91 334249 23 15891 312662 4.84 328553 24 13525 299200 4.32 312725 25 16238 297072 5.18 313310 26 14478 295540 4.67 310018 27 14864 317765 4.47 332629 28 14566 300742 4.62 315308 29 14258 297214 4.58 311472 30 16003 284603 5.32 300606 31 14672 276469 5.04 291141 32 13578 267040 4.84 280618 33 15403 266060 5.47 281463 34 13658 267326 4.86 280984 35 14101 274594 4.88 288695 36 12975 272199 4.55 285174 37 13063 267183 4.66 280246 38 14764 280749 5.00 295513 39 14882 254758 5.52 269640 40 13508 268829 4.78 282337 41 14381 250877 5.42 265258 42 14133 257830 5.20 271963 43 13724 241306 5.38 255030 44 12039 239959 4.78 251998 45 13010 238498 5.17 251508 46 12890 240776 5.08 253666 47 11655 236361 4.70 248016 48 12612 229612 5.21 242224 49 11805 235822 4.77 247627 50 12197 229587 5.04 241784 51 12186 224308 5.15 236494 52 10703 209426 4.86 220129 53 11251 209271 5.10 220522 54 10602 205566 4.90 216168 55 9692 213681 4.34 223373 56 10857 205757 5.01 216614 57 9924 212970 4.45 222894 58 9267 203393 4.36 212660 59 10159 194839 4.96 204998 60 9496 200641 4.52 210137 61 10213 191445 5.06 201658 62 9386 187953 4.76 197339 63 8688 190531 4.36 199219 64 9502 183508 4.92 193010 65 8681 188067 4.41 196748 66 8696 180139 4.61 188835 67 8728 180011 4.62 188739 68 8337 188090 4.24 196427 69 9031 183464 4.69 192495 70 8703 175495 4.72 184198 71 8116 172403 4.50 180519 72 9072 172316 5.00 181388 73 8366 170332 4.68 178698 74 7798 170145 4.38 177943 75 8332 170139 4.67 178471 76 7265 163104 4.26 170369 77 8722 162285 5.10 171007 78 8347 164412 4.83 172759 79 7847 167965 4.46 175812 80 8368 161307 4.93 169675 81 8476 162185 4.97 170661 82 8051 158079 4.85 166130 83 7123 157203 4.33 164326 84 8071 156488 4.90 164559 85 7157 152730 4.48 159887 86 7435 153353 4.62 160788 87 7366 151607 4.63 158973 88 7049 146167 4.60 153216 89 7009 145280 4.60 152289 90 7118 145678 4.66 152796 91 6685 145376 4.40 152061 92 6450 142908 4.32 149358 93 6708 141445 4.53 148153 94 5924 140339 4.05 146263 95 6601 136281 4.62 142882 96 6157 134487 4.38 140644 97 5657 134104 4.05 139761 98 5798 127234 4.36 133032 99 3906 0 100.00 3906