Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/leftover/EPI-44_S41_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/leftover/EPI-44_S41_L005_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 13762658
Paired-end alignments with a unique best hit 7733705
Pairs without alignments under any condition 3651938
Pairs that did not map uniquely 2377015
Genomic sequence context not extractable (edges of chromosomes) 31800

Cytosine Methylation

Total C's analysed 228132333
Methylated C's in CpG context 9273623
Methylated C's in CHG context 1279711
Methylated C's in CHH context 7254809
Methylated C's in Unknown context 225878
Unmethylated C's in CpG context 22503284
Unmethylated C's in CHG context 47720775
Unmethylated C's in CHH context 140100131
Unmethylated C's in Unknown context 965417
Percentage methylation (CpG context) 29.2%
Percentage methylation (CHG context) 2.6%
Percentage methylation (CHH context) 4.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3832028 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 3869877 original bottom strand