EPI-43_S40_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8223444 lines in total Total number of methylation call strings processed: 16446888 Final Cytosine Methylation Report ================================= Total number of C's analysed: 179948249 Total methylated C's in CpG context: 6937231 Total methylated C's in CHG context: 1118919 Total methylated C's in CHH context: 8434136 Total C to T conversions in CpG context: 17229670 Total C to T conversions in CHG context: 36308078 Total C to T conversions in CHH context: 109920215 C methylated in CpG context: 28.7% C methylated in CHG context: 3.0% C methylated in CHH context: 7.1%