CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 124078 193777 39.04 317855 2 121261 207071 36.93 328332 3 115038 186825 38.11 301863 4 119305 157025 43.17 276330 5 117666 137130 46.18 254796 6 118394 116464 50.41 234858 7 133645 116193 53.49 249838 8 63502 130386 32.75 193888 9 56597 118522 32.32 175119 10 56122 116624 32.49 172746 11 60118 120468 33.29 180586 12 58854 122272 32.49 181126 13 57929 124686 31.72 182615 14 55681 125416 30.75 181097 15 55104 127007 30.26 182111 16 51562 125207 29.17 176769 17 49393 121731 28.86 171124 18 50935 124654 29.01 175589 19 49142 125837 28.08 174979 20 49587 126996 28.08 176583 21 48888 127696 27.69 176584 22 48840 125645 27.99 174485 23 48446 126030 27.77 174476 24 47869 125786 27.57 173655 25 47338 124164 27.60 171502 26 47761 123494 27.89 171255 27 47129 126853 27.09 173982 28 48608 126714 27.72 175322 29 46569 126164 26.96 172733 30 46554 126674 26.87 173228 31 47401 124130 27.63 171531 32 46140 122762 27.32 168902 33 47243 124246 27.55 171489 34 48073 124173 27.91 172246 35 47212 124109 27.56 171321 36 46401 126176 26.89 172577 37 45044 122827 26.83 167871 38 44337 122367 26.60 166704 39 45875 124127 26.98 170002 40 45773 122594 27.19 168367 41 44879 121972 26.90 166851 42 46084 124769 26.97 170853 43 45738 122470 27.19 168208 44 44274 121777 26.66 166051 45 45092 122257 26.94 167349 46 45515 123058 27.00 168573 47 44630 119998 27.11 164628 48 44440 121215 26.83 165655 49 46678 121312 27.79 167990 50 44435 121992 26.70 166427 51 44932 121058 27.07 165990 52 45288 124860 26.62 170148 53 44245 119638 27.00 163883 54 43328 119720 26.57 163048 55 43310 117548 26.92 160858 56 43776 117349 27.17 161125 57 44676 118215 27.43 162891 58 45452 119571 27.54 165023 59 46196 118065 28.12 164261 60 44721 118087 27.47 162808 61 45774 116331 28.24 162105 62 43679 117121 27.16 160800 63 43686 115776 27.40 159462 64 43096 115348 27.20 158444 65 43405 113915 27.59 157320 66 44278 114702 27.85 158980 67 43217 111408 27.95 154625 68 42081 111335 27.43 153416 69 41675 110065 27.46 151740 70 41028 109778 27.21 150806 71 40178 107300 27.24 147478 72 39541 107900 26.82 147441 73 39386 105245 27.23 144631 74 39338 104900 27.27 144238 75 38015 105045 26.57 143060 76 37801 104306 26.60 142107 77 38526 102387 27.34 140913 78 38355 103398 27.06 141753 79 37680 101473 27.08 139153 80 36820 100848 26.75 137668 81 36723 99275 27.00 135998 82 35327 98046 26.49 133373 83 36107 98970 26.73 135077 84 36029 98711 26.74 134740 85 35110 97574 26.46 132684 86 34530 95695 26.52 130225 87 33608 95306 26.07 128914 88 33622 94305 26.28 127927 89 33153 92912 26.30 126065 90 32505 93900 25.71 126405 91 32670 91552 26.30 124222 92 31937 90784 26.02 122721 93 31353 90632 25.70 121985 94 31555 89828 26.00 121383 95 30852 88913 25.76 119765 96 30875 89528 25.64 120403 97 29741 85656 25.77 115397 98 27832 80718 25.64 108550 99 22635 64844 25.87 87479 100 28395 79798 26.24 108193 101 26619 78688 25.28 105307 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 180268 263399 40.63 443667 2 104574 252118 29.32 356692 3 40591 244073 14.26 284664 4 20321 244850 7.66 265171 5 14114 218918 6.06 233032 6 15590 213907 6.79 229497 7 9579 264032 3.50 273611 8 5697 284134 1.97 289831 9 4466 270565 1.62 275031 10 4454 261638 1.67 266092 11 5206 264123 1.93 269329 12 4889 263660 1.82 268549 13 4782 253512 1.85 258294 14 4471 251654 1.75 256125 15 4695 260161 1.77 264856 16 4166 261114 1.57 265280 17 5328 258043 2.02 263371 18 4305 255225 1.66 259530 19 3736 255746 1.44 259482 20 4502 270500 1.64 275002 21 4249 273154 1.53 277403 22 4535 268121 1.66 272656 23 4556 271347 1.65 275903 24 4341 273522 1.56 277863 25 4286 264398 1.60 268684 26 6637 267547 2.42 274184 27 4050 270372 1.48 274422 28 3991 270845 1.45 274836 29 5664 275669 2.01 281333 30 3830 276927 1.36 280757 31 3892 268914 1.43 272806 32 3870 271797 1.40 275667 33 4157 272460 1.50 276617 34 4499 268084 1.65 272583 35 5971 270358 2.16 276329 36 4230 270123 1.54 274353 37 4088 263146 1.53 267234 38 5575 268254 2.04 273829 39 4110 265794 1.52 269904 40 4062 267281 1.50 271343 41 4016 266579 1.48 270595 42 3966 265931 1.47 269897 43 4017 262893 1.51 266910 44 4081 264926 1.52 269007 45 3911 264255 1.46 268166 46 3876 262163 1.46 266039 47 4591 261726 1.72 266317 48 3784 267203 1.40 270987 49 3987 261058 1.50 265045 50 4646 260280 1.75 264926 51 4007 264326 1.49 268333 52 4005 264624 1.49 268629 53 4079 260077 1.54 264156 54 4734 265419 1.75 270153 55 4496 261218 1.69 265714 56 4667 263155 1.74 267822 57 4907 261284 1.84 266191 58 4610 259556 1.75 264166 59 4810 260280 1.81 265090 60 4461 261007 1.68 265468 61 4599 257179 1.76 261778 62 4911 256968 1.88 261879 63 4994 254412 1.93 259406 64 4821 252473 1.87 257294 65 6792 252148 2.62 258940 66 4764 247542 1.89 252306 67 5012 240956 2.04 245968 68 5916 242306 2.38 248222 69 4368 242543 1.77 246911 70 4284 236188 1.78 240472 71 4461 235980 1.86 240441 72 4570 234540 1.91 239110 73 4546 233476 1.91 238022 74 5443 231355 2.30 236798 75 4206 231577 1.78 235783 76 4217 225297 1.84 229514 77 5463 226394 2.36 231857 78 4133 220841 1.84 224974 79 4244 217151 1.92 221395 80 4173 216262 1.89 220435 81 4211 213434 1.93 217645 82 4038 209254 1.89 213292 83 4304 213023 1.98 217327 84 4123 212083 1.91 216206 85 4194 208170 1.97 212364 86 4523 207857 2.13 212380 87 4108 207951 1.94 212059 88 4531 202432 2.19 206963 89 4430 202140 2.14 206570 90 3921 201401 1.91 205322 91 4206 198237 2.08 202443 92 4498 198094 2.22 202592 93 4535 196391 2.26 200926 94 4266 192532 2.17 196798 95 4620 190880 2.36 195500 96 4583 189265 2.36 193848 97 4556 173707 2.56 178263 98 4277 159058 2.62 163335 99 2430 104511 2.27 106941 100 3556 105404 3.26 108960 101 5961 168134 3.42 174095 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 257810 356413 41.97 614223 2 165839 382632 30.24 548471 3 102885 431734 19.24 534619 4 99353 458846 17.80 558199 5 93324 538068 14.78 631392 6 84536 593009 12.48 677545 7 60509 744517 7.52 805026 8 57854 807945 6.68 865799 9 44753 740988 5.70 785741 10 45620 719805 5.96 765425 11 60262 719733 7.73 779995 12 51041 720787 6.61 771828 13 59448 732900 7.50 792348 14 64146 749481 7.88 813627 15 55256 767787 6.71 823043 16 55102 777806 6.62 832908 17 62414 783675 7.38 846089 18 51511 811918 5.97 863429 19 52832 825908 6.01 878740 20 61971 856826 6.74 918797 21 53528 856728 5.88 910256 22 60175 857818 6.56 917993 23 62827 856231 6.84 919058 24 55001 854206 6.05 909207 25 60664 857413 6.61 918077 26 64430 867271 6.92 931701 27 55862 872111 6.02 927973 28 54592 877401 5.86 931993 29 64268 872726 6.86 936994 30 55356 864460 6.02 919816 31 57135 854491 6.27 911626 32 59332 856919 6.48 916251 33 54531 857369 5.98 911900 34 64391 865453 6.92 929844 35 64085 857716 6.95 921801 36 54520 866356 5.92 920876 37 54057 856771 5.93 910828 38 65767 863255 7.08 929022 39 54885 851460 6.06 906345 40 56064 852592 6.17 908656 41 64483 856820 7.00 921303 42 58292 860038 6.35 918330 43 63195 851259 6.91 914454 44 62727 859284 6.80 922011 45 59806 849112 6.58 908918 46 56987 853048 6.26 910035 47 61551 847855 6.77 909406 48 52346 850119 5.80 902465 49 53962 840502 6.03 894464 50 61669 832278 6.90 893947 51 53314 827428 6.05 880742 52 58203 823520 6.60 881723 53 61132 819681 6.94 880813 54 54302 819611 6.21 873913 55 54807 814478 6.30 869285 56 60665 812012 6.95 872677 57 52938 812997 6.11 865935 58 53420 811983 6.17 865403 59 60790 812453 6.96 873243 60 52290 801772 6.12 854062 61 57885 793033 6.80 850918 62 59471 784521 7.05 843992 63 52234 778311 6.29 830545 64 55935 771437 6.76 827372 65 56741 766226 6.89 822967 66 50563 759365 6.24 809928 67 50780 750840 6.33 801620 68 55223 746231 6.89 801454 69 50684 741206 6.40 791890 70 50767 735096 6.46 785863 71 55426 731463 7.04 786889 72 50430 729702 6.46 780132 73 56271 716730 7.28 773001 74 56071 716217 7.26 772288 75 49731 707820 6.56 757551 76 50184 702089 6.67 752273 77 57660 694613 7.66 752273 78 47051 689689 6.39 736740 79 49625 683408 6.77 733033 80 54993 679200 7.49 734193 81 52155 666381 7.26 718536 82 53553 663661 7.47 717214 83 55372 665544 7.68 720916 84 49963 656345 7.07 706308 85 47982 645829 6.92 693811 86 51371 639508 7.44 690879 87 44742 635515 6.58 680257 88 45902 623815 6.85 669717 89 51346 622214 7.62 673560 90 45614 618478 6.87 664092 91 47251 611949 7.17 659200 92 49875 608332 7.58 658207 93 45248 601799 6.99 647047 94 45041 596334 7.02 641375 95 49401 588528 7.74 637929 96 42234 577871 6.81 620105 97 42248 561390 7.00 603638 98 45098 521266 7.96 566364 99 26738 366143 6.81 392881 100 30018 329815 8.34 359833 101 42922 514932 7.69 557854 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 109489 126389 46.42 235878 2 95862 108077 47.01 203939 3 101726 120988 45.68 222714 4 93020 133553 41.06 226573 5 40976 170512 19.38 211488 6 25218 94245 21.11 119463 7 21645 98371 18.04 120016 8 22839 92538 19.80 115377 9 19975 78781 20.23 98756 10 22271 87124 20.36 109395 11 23449 86783 21.27 110232 12 22278 82441 21.27 104719 13 23088 80103 22.37 103191 14 24011 84071 22.22 108082 15 23284 75258 23.63 98542 16 21638 71883 23.14 93521 17 26682 79434 25.14 106116 18 25824 76850 25.15 102674 19 24782 75632 24.68 100414 20 22928 71510 24.28 94438 21 24014 70237 25.48 94251 22 23691 72629 24.60 96320 23 22402 70210 24.19 92612 24 21434 66487 24.38 87921 25 24088 69676 25.69 93764 26 21987 66993 24.71 88980 27 23605 67241 25.98 90846 28 21504 62915 25.47 84419 29 22271 66400 25.12 88671 30 20981 61932 25.30 82913 31 20553 64064 24.29 84617 32 20038 59777 25.11 79815 33 22648 61032 27.07 83680 34 21081 64216 24.71 85297 35 26084 69524 27.28 95608 36 21155 60841 25.80 81996 37 22030 62839 25.96 84869 38 19693 59427 24.89 79120 39 20685 58411 26.15 79096 40 22439 57978 27.90 80417 41 19863 56786 25.91 76649 42 19915 59603 25.04 79518 43 19699 57628 25.47 77327 44 18435 55485 24.94 73920 45 22663 61580 26.90 84243 46 18155 52042 25.86 70197 47 18388 53579 25.55 71967 48 18636 52175 26.32 70811 49 18083 54892 24.78 72975 50 16955 49845 25.38 66800 51 17004 48663 25.89 65667 52 17579 50382 25.87 67961 53 17286 48775 26.17 66061 54 16991 49582 25.52 66573 55 17427 47423 26.87 64850 56 15663 46433 25.22 62096 57 16059 46991 25.47 63050 58 15814 45909 25.62 61723 59 14965 43301 25.68 58266 60 15468 44343 25.86 59811 61 13625 42937 24.09 56562 62 13951 41041 25.37 54992 63 15091 41607 26.62 56698 64 14020 41359 25.32 55379 65 13861 38960 26.24 52821 66 14700 40350 26.70 55050 67 13670 41520 24.77 55190 68 14749 42902 25.58 57651 69 13373 39522 25.28 52895 70 13052 39039 25.06 52091 71 13441 36200 27.08 49641 72 12812 35709 26.41 48521 73 12424 36587 25.35 49011 74 11405 35381 24.38 46786 75 11758 35922 24.66 47680 76 12117 34455 26.02 46572 77 11557 34602 25.04 46159 78 11619 35020 24.91 46639 79 11117 32809 25.31 43926 80 11128 32514 25.50 43642 81 10928 32432 25.20 43360 82 11166 33205 25.17 44371 83 11326 31438 26.48 42764 84 12189 34582 26.06 46771 85 10693 31676 25.24 42369 86 10703 31316 25.47 42019 87 10207 30504 25.07 40711 88 10482 30980 25.28 41462 89 10748 31389 25.51 42137 90 10872 30674 26.17 41546 91 10229 29739 25.59 39968 92 9810 28813 25.40 38623 93 9854 29247 25.20 39101 94 10193 29257 25.84 39450 95 9753 28367 25.58 38120 96 9786 28064 25.85 37850 97 10651 30339 25.98 40990 98 9391 26254 26.35 35645 99 8524 0 100.00 8524 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 32529 155111 17.34 187640 2 31048 152573 16.91 183621 3 29159 157405 15.63 186564 4 31139 173349 15.23 204488 5 4468 309767 1.42 314235 6 3631 378904 0.95 382535 7 2473 215358 1.14 217831 8 2507 229111 1.08 231618 9 2527 187855 1.33 190382 10 2324 180328 1.27 182652 11 3933 244437 1.58 248370 12 2671 193159 1.36 195830 13 2297 191704 1.18 194001 14 2330 183098 1.26 185428 15 2569 178642 1.42 181211 16 2325 165845 1.38 168170 17 2445 179826 1.34 182271 18 4104 156928 2.55 161032 19 2495 157814 1.56 160309 20 2458 154618 1.56 157076 21 4432 146368 2.94 150800 22 2657 163486 1.60 166143 23 2491 160734 1.53 163225 24 2182 144273 1.49 146455 25 2399 147212 1.60 149611 26 2675 154062 1.71 156737 27 2486 143039 1.71 145525 28 2305 137730 1.65 140035 29 2515 148362 1.67 150877 30 2654 141608 1.84 144262 31 2088 135344 1.52 137432 32 2192 139552 1.55 141744 33 2531 164421 1.52 166952 34 2222 134387 1.63 136609 35 2402 140033 1.69 142435 36 2244 139584 1.58 141828 37 2103 128452 1.61 130555 38 2366 137268 1.69 139634 39 2419 128430 1.85 130849 40 2150 125588 1.68 127738 41 2489 120730 2.02 123219 42 2439 113774 2.10 116213 43 2652 119458 2.17 122110 44 2202 117752 1.84 119954 45 2121 108032 1.93 110153 46 2197 110056 1.96 112253 47 2530 111649 2.22 114179 48 2460 106249 2.26 108709 49 2345 111751 2.06 114096 50 2568 107686 2.33 110254 51 2380 100458 2.31 102838 52 2200 99259 2.17 101459 53 2524 110570 2.23 113094 54 2304 98758 2.28 101062 55 2183 100130 2.13 102313 56 2265 97516 2.27 99781 57 3095 94968 3.16 98063 58 2263 95066 2.33 97329 59 1824 95489 1.87 97313 60 2253 91853 2.39 94106 61 1428 91073 1.54 92501 62 1472 95141 1.52 96613 63 1282 95255 1.33 96537 64 1272 85344 1.47 86616 65 1374 91600 1.48 92974 66 1216 82619 1.45 83835 67 1337 91497 1.44 92834 68 1293 88771 1.44 90064 69 1310 86429 1.49 87739 70 1094 85439 1.26 86533 71 1154 87846 1.30 89000 72 1165 80425 1.43 81590 73 1020 80256 1.25 81276 74 1061 83431 1.26 84492 75 1031 78843 1.29 79874 76 1067 75811 1.39 76878 77 1161 81431 1.41 82592 78 1178 78118 1.49 79296 79 1111 76764 1.43 77875 80 1020 73672 1.37 74692 81 1137 72128 1.55 73265 82 1079 70940 1.50 72019 83 1074 71856 1.47 72930 84 1031 69249 1.47 70280 85 1093 77971 1.38 79064 86 1085 69955 1.53 71040 87 1204 68798 1.72 70002 88 1064 66265 1.58 67329 89 1211 71548 1.66 72759 90 1145 70078 1.61 71223 91 997 70972 1.39 71969 92 993 67691 1.45 68684 93 1008 64616 1.54 65624 94 993 63790 1.53 64783 95 1151 65448 1.73 66599 96 1419 62195 2.23 63614 97 1047 60952 1.69 61999 98 1051 59901 1.72 60952 99 1086 0 100.00 1086 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 81231 200426 28.84 281657 2 75558 159221 32.18 234779 3 79161 164954 32.43 244115 4 78813 164795 32.35 243608 5 28693 332896 7.94 361589 6 34858 459184 7.06 494042 7 35013 621181 5.34 656194 8 31340 617582 4.83 648922 9 36454 578193 5.93 614647 10 32271 591782 5.17 624053 11 34032 586780 5.48 620812 12 33204 547452 5.72 580656 13 31162 567662 5.20 598824 14 31748 574888 5.23 606636 15 29656 595688 4.74 625344 16 27102 565740 4.57 592842 17 30799 568019 5.14 598818 18 31147 566570 5.21 597717 19 26598 523659 4.83 550257 20 32202 555253 5.48 587455 21 30122 517957 5.50 548079 22 31901 504992 5.94 536893 23 30236 496535 5.74 526771 24 27385 474842 5.45 502227 25 32131 472425 6.37 504556 26 28218 469068 5.67 497286 27 29599 500281 5.59 529880 28 28349 478923 5.59 507272 29 28220 470254 5.66 498474 30 32337 454167 6.65 486504 31 28918 441083 6.15 470001 32 26772 427260 5.90 454032 33 31125 423003 6.85 454128 34 27460 423222 6.09 450682 35 27392 435150 5.92 462542 36 26160 432325 5.71 458485 37 25788 423728 5.74 449516 38 28551 441537 6.07 470088 39 29644 404266 6.83 433910 40 26535 424788 5.88 451323 41 28536 400413 6.65 428949 42 27866 408488 6.39 436354 43 27387 384357 6.65 411744 44 23983 383446 5.89 407429 45 26533 379797 6.53 406330 46 24938 383837 6.10 408775 47 23393 376576 5.85 399969 48 25694 364974 6.58 390668 49 23904 370911 6.05 394815 50 24207 364930 6.22 389137 51 25317 355695 6.64 381012 52 22135 336336 6.17 358471 53 22424 336129 6.25 358553 54 21190 327399 6.08 348589 55 20365 337470 5.69 357835 56 21235 326160 6.11 347395 57 20827 335161 5.85 355988 58 18944 322109 5.55 341053 59 20692 311002 6.24 331694 60 19730 318477 5.83 338207 61 21172 304905 6.49 326077 62 19092 299685 5.99 318777 63 18463 301586 5.77 320049 64 19905 292596 6.37 312501 65 17876 297338 5.67 315214 66 18081 286418 5.94 304499 67 17701 286491 5.82 304192 68 17367 294955 5.56 312322 69 18731 288940 6.09 307671 70 17597 279226 5.93 296823 71 16954 273363 5.84 290317 72 18910 273943 6.46 292853 73 17249 269781 6.01 287030 74 16186 268732 5.68 284918 75 16546 268211 5.81 284757 76 15564 258176 5.69 273740 77 17834 257808 6.47 275642 78 17436 259243 6.30 276679 79 16340 265346 5.80 281686 80 16909 254857 6.22 271766 81 17560 254816 6.45 272376 82 16682 250197 6.25 266879 83 14806 249508 5.60 264314 84 16338 247584 6.19 263922 85 14888 242428 5.79 257316 86 15054 242075 5.85 257129 87 15083 238962 5.94 254045 88 14356 232148 5.82 246504 89 14325 230262 5.86 244587 90 14747 230818 6.01 245565 91 14032 229656 5.76 243688 92 13205 227628 5.48 240833 93 13376 224655 5.62 238031 94 12373 220632 5.31 233005 95 13220 217583 5.73 230803 96 12782 214399 5.63 227181 97 11602 214272 5.14 225874 98 11472 200973 5.40 212445 99 8523 0 100.00 8523