Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/leftover/EPI-43_S40_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/leftover/EPI-43_S40_L005_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 22573555
Paired-end alignments with a unique best hit 13109139
Pairs without alignments under any condition 5488169
Pairs that did not map uniquely 3976247
Genomic sequence context not extractable (edges of chromosomes) 54093

Cytosine Methylation

Total C's analysed 397115186
Methylated C's in CpG context 14583461
Methylated C's in CHG context 2174502
Methylated C's in CHH context 15208068
Methylated C's in Unknown context 439463
Unmethylated C's in CpG context 40745033
Unmethylated C's in CHG context 82270408
Unmethylated C's in CHH context 242133714
Unmethylated C's in Unknown context 1737906
Percentage methylation (CpG context) 26.4%
Percentage methylation (CHG context) 2.6%
Percentage methylation (CHH context) 5.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 6514997 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 6540049 original bottom strand