EPI-42_S39_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 10928565 lines in total Total number of methylation call strings processed: 21857130 Final Cytosine Methylation Report ================================= Total number of C's analysed: 230149373 Total methylated C's in CpG context: 9797001 Total methylated C's in CHG context: 1331538 Total methylated C's in CHH context: 5440340 Total C to T conversions in CpG context: 21851850 Total C to T conversions in CHG context: 48404322 Total C to T conversions in CHH context: 143324322 C methylated in CpG context: 31.0% C methylated in CHG context: 2.7% C methylated in CHH context: 3.7%