CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 182879 261033 41.20 443912 2 175355 278971 38.60 454326 3 167429 246631 40.44 414060 4 179642 201817 47.09 381459 5 176051 174021 50.29 350072 6 177127 148599 54.38 325726 7 198997 145616 57.75 344613 8 94718 168300 36.01 263018 9 84332 157021 34.94 241353 10 84401 151407 35.79 235808 11 89993 155105 36.72 245098 12 87003 158156 35.49 245159 13 85291 161816 34.52 247107 14 79930 162555 32.96 242485 15 77983 164127 32.21 242110 16 71468 163626 30.40 235094 17 67666 157067 30.11 224733 18 69421 161400 30.08 230821 19 67823 162173 29.49 229996 20 68966 165154 29.46 234120 21 69090 166372 29.34 235462 22 67719 163813 29.25 231532 23 67749 162520 29.42 230269 24 67335 163532 29.17 230867 25 65138 160647 28.85 225785 26 65843 159880 29.17 225723 27 66053 164452 28.66 230505 28 68021 163981 29.32 232002 29 65682 165181 28.45 230863 30 63938 164237 28.02 228175 31 65604 161502 28.89 227106 32 64515 158174 28.97 222689 33 64904 159944 28.87 224848 34 66562 160017 29.38 226579 35 65209 159456 29.02 224665 36 64207 161705 28.42 225912 37 62221 156767 28.41 218988 38 61303 156552 28.14 217855 39 63817 159889 28.53 223706 40 63418 157688 28.68 221106 41 62923 157590 28.53 220513 42 64361 161167 28.54 225528 43 62820 157508 28.51 220328 44 62834 156454 28.65 219288 45 63654 156540 28.91 220194 46 63982 157935 28.83 221917 47 63602 153789 29.26 217391 48 62766 155845 28.71 218611 49 64958 156642 29.31 221600 50 62342 156238 28.52 218580 51 63157 156407 28.76 219564 52 62925 161882 27.99 224807 53 61994 155261 28.54 217255 54 60766 154837 28.18 215603 55 60900 150749 28.77 211649 56 60821 150622 28.76 211443 57 62515 151114 29.26 213629 58 63524 152158 29.45 215682 59 64087 151261 29.76 215348 60 62681 151802 29.22 214483 61 63163 149808 29.66 212971 62 61355 150834 28.92 212189 63 61023 149879 28.93 210902 64 60001 148727 28.75 208728 65 60849 146011 29.42 206860 66 61894 146640 29.68 208534 67 59572 142346 29.50 201918 68 58896 142428 29.25 201324 69 58572 140689 29.39 199261 70 57714 140183 29.16 197897 71 56505 137266 29.16 193771 72 56132 136879 29.08 193011 73 55318 133944 29.23 189262 74 54959 133425 29.17 188384 75 53095 133443 28.46 186538 76 53414 131739 28.85 185153 77 54372 130341 29.44 184713 78 53577 130689 29.08 184266 79 52416 129319 28.84 181735 80 51690 127851 28.79 179541 81 50744 126327 28.66 177071 82 49623 124974 28.42 174597 83 50441 125515 28.67 175956 84 49927 125871 28.40 175798 85 49418 123657 28.55 173075 86 48114 121109 28.43 169223 87 46754 120707 27.92 167461 88 47331 119318 28.40 166649 89 46363 118050 28.20 164413 90 45742 117983 27.94 163725 91 45545 115174 28.34 160719 92 44635 114509 28.05 159144 93 44332 115180 27.79 159512 94 44585 113120 28.27 157705 95 43901 111509 28.25 155410 96 43927 113345 27.93 157272 97 42623 109138 28.09 151761 98 39518 101396 28.04 140914 99 31842 80538 28.33 112380 100 40932 100960 28.85 141892 101 38215 99065 27.84 137280 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 244810 343313 41.63 588123 2 143367 322308 30.79 465675 3 57872 313837 15.57 371709 4 30452 318608 8.72 349060 5 19508 296038 6.18 315546 6 17383 284648 5.76 302031 7 13711 351008 3.76 364719 8 6705 381701 1.73 388406 9 5622 360645 1.53 366267 10 5622 344184 1.61 349806 11 6003 348360 1.69 354363 12 5766 352658 1.61 358424 13 5260 338960 1.53 344220 14 4827 338923 1.40 343750 15 4914 349148 1.39 354062 16 4375 348958 1.24 353333 17 4920 346120 1.40 351040 18 4412 345666 1.26 350078 19 3995 345329 1.14 349324 20 4605 365338 1.24 369943 21 4426 371421 1.18 375847 22 4599 363986 1.25 368585 23 4650 370255 1.24 374905 24 4407 372884 1.17 377291 25 4356 359927 1.20 364283 26 5997 365099 1.62 371096 27 4481 371455 1.19 375936 28 4230 368896 1.13 373126 29 5328 372244 1.41 377572 30 4287 374941 1.13 379228 31 4420 364276 1.20 368696 32 4307 367734 1.16 372041 33 4474 370430 1.19 374904 34 4629 362907 1.26 367536 35 5333 365754 1.44 371087 36 4511 367869 1.21 372380 37 4533 356640 1.26 361173 38 5199 361312 1.42 366511 39 4448 359892 1.22 364340 40 4413 360659 1.21 365072 41 4302 360668 1.18 364970 42 4147 361481 1.13 365628 43 4218 354227 1.18 358445 44 4231 359422 1.16 363653 45 4301 357894 1.19 362195 46 4244 355716 1.18 359960 47 4866 355044 1.35 359910 48 4174 363565 1.14 367739 49 4310 353527 1.20 357837 50 4984 350729 1.40 355713 51 4507 357745 1.24 362252 52 4333 356005 1.20 360338 53 4490 351550 1.26 356040 54 4692 358787 1.29 363479 55 4499 353098 1.26 357597 56 4634 356069 1.28 360703 57 5541 353971 1.54 359512 58 4870 350250 1.37 355120 59 4982 352408 1.39 357390 60 4824 353018 1.35 357842 61 5041 347033 1.43 352074 62 5335 347394 1.51 352729 63 5288 345529 1.51 350817 64 5215 342248 1.50 347463 65 6406 340939 1.84 347345 66 5124 335172 1.51 340296 67 5077 325725 1.53 330802 68 5884 327702 1.76 333586 69 4755 326405 1.44 331160 70 4795 317462 1.49 322257 71 4838 317862 1.50 322700 72 4907 316881 1.52 321788 73 4800 311107 1.52 315907 74 5133 309374 1.63 314507 75 4502 310798 1.43 315300 76 4531 300597 1.48 305128 77 5354 301373 1.75 306727 78 4663 297135 1.55 301798 79 4616 289529 1.57 294145 80 4620 288743 1.57 293363 81 4913 285428 1.69 290341 82 4562 279302 1.61 283864 83 4853 285608 1.67 290461 84 4581 283963 1.59 288544 85 4529 279782 1.59 284311 86 4630 279479 1.63 284109 87 4596 280424 1.61 285020 88 5072 272151 1.83 277223 89 4697 271286 1.70 275983 90 4350 270551 1.58 274901 91 4606 264367 1.71 268973 92 4685 266166 1.73 270851 93 4828 263405 1.80 268233 94 4775 258231 1.82 263006 95 5019 256029 1.92 261048 96 4696 253704 1.82 258400 97 4712 232041 1.99 236753 98 4431 211807 2.05 216238 99 2864 137522 2.04 140386 100 3450 139161 2.42 142611 101 6422 226479 2.76 232901 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 290365 451126 39.16 741491 2 160487 478044 25.13 638531 3 87470 550006 13.72 637476 4 78139 578481 11.90 656620 5 72144 676295 9.64 748439 6 61587 737822 7.70 799409 7 49494 930999 5.05 980493 8 38648 1010034 3.69 1048682 9 29307 934752 3.04 964059 10 29960 911951 3.18 941911 11 38315 918386 4.00 956701 12 31458 932423 3.26 963881 13 36451 952639 3.69 989090 14 39757 978273 3.91 1018030 15 33275 1009017 3.19 1042292 16 33112 1027667 3.12 1060779 17 38515 1033560 3.59 1072075 18 31613 1078360 2.85 1109973 19 32442 1099439 2.87 1131881 20 38159 1141316 3.24 1179475 21 32970 1140798 2.81 1173768 22 36630 1141647 3.11 1178277 23 39118 1139789 3.32 1178907 24 33424 1138660 2.85 1172084 25 36411 1143432 3.09 1179843 26 39043 1157701 3.26 1196744 27 33708 1162135 2.82 1195843 28 33403 1165616 2.79 1199019 29 38692 1159801 3.23 1198493 30 33008 1148154 2.79 1181162 31 34555 1132532 2.96 1167087 32 36263 1136901 3.09 1173164 33 32421 1137058 2.77 1169479 34 38590 1142773 3.27 1181363 35 39390 1133451 3.36 1172841 36 33683 1140349 2.87 1174032 37 33131 1134255 2.84 1167386 38 40151 1138435 3.41 1178586 39 33868 1126724 2.92 1160592 40 34250 1125576 2.95 1159826 41 39691 1131825 3.39 1171516 42 35304 1138956 3.01 1174260 43 37546 1124662 3.23 1162208 44 38457 1134055 3.28 1172512 45 35697 1120111 3.09 1155808 46 34381 1122458 2.97 1156839 47 37848 1116219 3.28 1154067 48 31191 1117411 2.72 1148602 49 32578 1103289 2.87 1135867 50 38511 1093596 3.40 1132107 51 32170 1088208 2.87 1120378 52 34779 1080817 3.12 1115596 53 37241 1075104 3.35 1112345 54 32160 1078971 2.89 1111131 55 32910 1074754 2.97 1107664 56 36853 1067777 3.34 1104630 57 33154 1071086 3.00 1104240 58 32404 1069893 2.94 1102297 59 36851 1070969 3.33 1107820 60 31272 1056661 2.87 1087933 61 34462 1046212 3.19 1080674 62 35291 1032327 3.31 1067618 63 31036 1024919 2.94 1055955 64 34080 1016352 3.24 1050432 65 34067 1010000 3.26 1044067 66 30364 999186 2.95 1029550 67 30269 989021 2.97 1019290 68 33301 983533 3.27 1016834 69 29791 977392 2.96 1007183 70 30138 969190 3.02 999328 71 33156 963777 3.33 996933 72 29676 959071 3.00 988747 73 33065 943720 3.39 976785 74 33999 942076 3.48 976075 75 29376 933352 3.05 962728 76 30271 925043 3.17 955314 77 33984 915527 3.58 949511 78 27995 908036 2.99 936031 79 29279 900223 3.15 929502 80 33083 893848 3.57 926931 81 30754 877855 3.38 908609 82 31391 873981 3.47 905372 83 32764 872408 3.62 905172 84 29266 859958 3.29 889224 85 28207 847541 3.22 875748 86 30600 838510 3.52 869110 87 26525 832794 3.09 859319 88 28149 821764 3.31 849913 89 30288 817895 3.57 848183 90 26512 810773 3.17 837285 91 28289 799986 3.42 828275 92 29592 799116 3.57 828708 93 26704 790382 3.27 817086 94 26774 780020 3.32 806794 95 29529 771506 3.69 801035 96 25159 755720 3.22 780879 97 25316 735792 3.33 761108 98 27013 681440 3.81 708453 99 16170 476108 3.28 492278 100 18119 426207 4.08 444326 101 26353 677361 3.74 703714 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 159018 164544 49.15 323562 2 135754 137401 49.70 273155 3 141791 152458 48.19 294249 4 128035 167446 43.33 295481 5 57572 211464 21.40 269036 6 36297 119341 23.32 155638 7 31019 126650 19.67 157669 8 32556 116761 21.80 149317 9 28116 98923 22.13 127039 10 30664 110252 21.76 140916 11 33224 109886 23.22 143110 12 31268 105639 22.84 136907 13 32579 101159 24.36 133738 14 33874 104612 24.46 138486 15 32877 94662 25.78 127539 16 30461 90275 25.23 120736 17 37583 100317 27.25 137900 18 35962 95179 27.42 131141 19 34858 94312 26.99 129170 20 31957 90096 26.18 122053 21 33542 87515 27.71 121057 22 33339 90559 26.91 123898 23 31566 87428 26.53 118994 24 29542 82703 26.32 112245 25 33425 87206 27.71 120631 26 30615 83291 26.88 113906 27 32633 83810 28.02 116443 28 29873 78754 27.50 108627 29 31652 83259 27.54 114911 30 29444 76120 27.89 105564 31 28573 79497 26.44 108070 32 27701 74413 27.13 102114 33 31745 74970 29.75 106715 34 29928 78717 27.55 108645 35 37403 86187 30.26 123590 36 30265 74144 28.99 104409 37 31135 78004 28.53 109139 38 27964 72536 27.82 100500 39 28906 71919 28.67 100825 40 31745 71853 30.64 103598 41 27643 69449 28.47 97092 42 27840 72703 27.69 100543 43 27508 70336 28.11 97844 44 25565 67474 27.48 93039 45 31971 75128 29.85 107099 46 25550 64037 28.52 89587 47 25687 64247 28.56 89934 48 26007 63679 29.00 89686 49 24548 65772 27.18 90320 50 23555 60935 27.88 84490 51 23447 58908 28.47 82355 52 24028 61066 28.24 85094 53 24461 58897 29.34 83358 54 23492 58611 28.61 82103 55 23780 56746 29.53 80526 56 21837 56124 28.01 77961 57 22554 56320 28.59 78874 58 21786 55934 28.03 77720 59 20350 51902 28.17 72252 60 21292 53244 28.57 74536 61 18837 51097 26.94 69934 62 19477 49314 28.31 68791 63 20837 49723 29.53 70560 64 19330 49787 27.97 69117 65 19353 47414 28.99 66767 66 20385 48921 29.41 69306 67 18454 49402 27.20 67856 68 20510 51468 28.49 71978 69 18649 46635 28.57 65284 70 17773 46822 27.51 64595 71 18640 43751 29.88 62391 72 17365 42921 28.80 60286 73 17579 43596 28.74 61175 74 15696 42367 27.03 58063 75 16170 42084 27.76 58254 76 16416 41350 28.42 57766 77 15972 41735 27.68 57707 78 16008 41285 27.94 57293 79 15289 39912 27.70 55201 80 15202 39164 27.96 54366 81 15019 39204 27.70 54223 82 15080 39420 27.67 54500 83 15184 37854 28.63 53038 84 16965 40793 29.37 57758 85 14322 37956 27.40 52278 86 14295 37401 27.65 51696 87 14097 36656 27.78 50753 88 14266 36735 27.97 51001 89 14871 36370 29.02 51241 90 15080 36133 29.45 51213 91 13692 35434 27.87 49126 92 13228 34520 27.70 47748 93 13255 34337 27.85 47592 94 13989 34449 28.88 48438 95 13634 33685 28.81 47319 96 12861 33244 27.90 46105 97 14540 35333 29.15 49873 98 12852 31213 29.17 44065 99 11023 0 100.00 11023 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 42158 205826 17.00 247984 2 39453 202099 16.33 241552 3 37162 207822 15.17 244984 4 40248 227271 15.04 267519 5 5388 406684 1.31 412072 6 4069 497034 0.81 501103 7 2594 289093 0.89 291687 8 2596 308911 0.83 311507 9 2347 248064 0.94 250411 10 2494 239296 1.03 241790 11 3720 338447 1.09 342167 12 2614 257877 1.00 260491 13 2510 255824 0.97 258334 14 2521 244421 1.02 246942 15 2577 238587 1.07 241164 16 2294 219939 1.03 222233 17 2511 239203 1.04 241714 18 3279 207537 1.56 210816 19 2601 209180 1.23 211781 20 2774 206145 1.33 208919 21 3600 191663 1.84 195263 22 2802 216246 1.28 219048 23 2857 215359 1.31 218216 24 2480 190193 1.29 192673 25 2566 195065 1.30 197631 26 3024 204133 1.46 207157 27 2708 189233 1.41 191941 28 2644 181182 1.44 183826 29 2752 197215 1.38 199967 30 2848 186507 1.50 189355 31 2633 178977 1.45 181610 32 2593 182786 1.40 185379 33 2975 217847 1.35 220822 34 2602 175230 1.46 177832 35 2851 185918 1.51 188769 36 2670 182611 1.44 185281 37 2438 166957 1.44 169395 38 2804 181404 1.52 184208 39 2633 166034 1.56 168667 40 2549 162241 1.55 164790 41 2746 159413 1.69 162159 42 2882 148896 1.90 151778 43 2943 155626 1.86 158569 44 2459 152901 1.58 155360 45 2544 139226 1.79 141770 46 2666 141317 1.85 143983 47 2859 146738 1.91 149597 48 2615 138225 1.86 140840 49 2606 145608 1.76 148214 50 2650 139250 1.87 141900 51 2438 129072 1.85 131510 52 2631 127878 2.02 130509 53 2925 143588 2.00 146513 54 2398 128727 1.83 131125 55 2402 129612 1.82 132014 56 2452 127237 1.89 129689 57 2626 123113 2.09 125739 58 2024 122206 1.63 124230 59 1826 124294 1.45 126120 60 1785 117272 1.50 119057 61 1445 117478 1.22 118923 62 1428 121713 1.16 123141 63 1300 123116 1.04 124416 64 1203 110187 1.08 111390 65 1361 118827 1.13 120188 66 1229 106635 1.14 107864 67 1291 117533 1.09 118824 68 1141 114001 0.99 115142 69 1248 109359 1.13 110607 70 1205 110095 1.08 111300 71 1184 113058 1.04 114242 72 1190 102454 1.15 103644 73 1105 102729 1.06 103834 74 1142 105271 1.07 106413 75 1073 100578 1.06 101651 76 1044 98297 1.05 99341 77 1154 104850 1.09 106004 78 1077 98388 1.08 99465 79 1087 98335 1.09 99422 80 1061 94627 1.11 95688 81 1162 92033 1.25 93195 82 1047 89770 1.15 90817 83 1174 92233 1.26 93407 84 953 87802 1.07 88755 85 1107 98533 1.11 99640 86 1080 89415 1.19 90495 87 1068 87526 1.21 88594 88 1005 83547 1.19 84552 89 1134 89406 1.25 90540 90 1089 87034 1.24 88123 91 1055 89544 1.16 90599 92 987 84399 1.16 85386 93 981 81698 1.19 82679 94 1015 80332 1.25 81347 95 1083 82579 1.29 83662 96 1085 77418 1.38 78503 97 1034 76450 1.33 77484 98 897 75413 1.18 76310 99 737 0 100.00 737 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 68221 258257 20.90 326478 2 57317 201601 22.14 258918 3 59134 211860 21.82 270994 4 59831 211730 22.03 271561 5 18241 434611 4.03 452852 6 20560 602312 3.30 622872 7 21597 811147 2.59 832744 8 19541 800298 2.38 819839 9 21422 745854 2.79 767276 10 20799 770536 2.63 791335 11 20767 762855 2.65 783622 12 19302 713098 2.64 732400 13 19264 743078 2.53 762342 14 20007 753234 2.59 773241 15 18391 779172 2.31 797563 16 17496 745313 2.29 762809 17 19232 747451 2.51 766683 18 18672 736411 2.47 755083 19 16655 680273 2.39 696928 20 19893 725679 2.67 745572 21 18155 677733 2.61 695888 22 19742 654062 2.93 673804 23 18625 641667 2.82 660292 24 16439 614818 2.60 631257 25 19757 610277 3.14 630034 26 17908 610290 2.85 628198 27 18542 650569 2.77 669111 28 17676 615691 2.79 633367 29 17615 609554 2.81 627169 30 18962 583738 3.15 602700 31 17946 567470 3.07 585416 32 16365 551840 2.88 568205 33 18575 547281 3.28 565856 34 17362 545695 3.08 563057 35 18025 560571 3.12 578596 36 16444 555303 2.88 571747 37 16454 545265 2.93 561719 38 17825 573189 3.02 591014 39 17679 520210 3.29 537889 40 17001 546031 3.02 563032 41 17172 511037 3.25 528209 42 17214 524911 3.18 542125 43 17442 493354 3.41 510796 44 15259 489300 3.02 504559 45 16300 485647 3.25 501947 46 15983 492035 3.15 508018 47 14981 480288 3.02 495269 48 15414 466860 3.20 482274 49 14916 478325 3.02 493241 50 14895 467964 3.08 482859 51 14932 454743 3.18 469675 52 14056 426907 3.19 440963 53 13980 428398 3.16 442378 54 13143 416079 3.06 429222 55 12994 432079 2.92 445073 56 13679 413307 3.20 426986 57 12694 429675 2.87 442369 58 11721 412055 2.77 423776 59 12459 394021 3.07 406480 60 11534 406077 2.76 417611 61 12205 387039 3.06 399244 62 11267 380775 2.87 392042 63 10697 384572 2.71 395269 64 11710 370658 3.06 382368 65 10526 378558 2.71 389084 66 10493 362055 2.82 372548 67 10404 364050 2.78 374454 68 10374 379178 2.66 389552 69 10753 366650 2.85 377403 70 10621 352262 2.93 362883 71 9912 345724 2.79 355636 72 10695 345226 3.00 355921 73 10041 340871 2.86 350912 74 9430 342797 2.68 352227 75 9775 340564 2.79 350339 76 9092 326252 2.71 335344 77 10319 326034 3.07 336353 78 9796 327685 2.90 337481 79 9678 333989 2.82 343667 80 9765 320982 2.95 330747 81 9957 320818 3.01 330775 82 9688 315815 2.98 325503 83 8824 314928 2.73 323752 84 9549 311523 2.97 321072 85 8834 305517 2.81 314351 86 8616 304732 2.75 313348 87 8671 301889 2.79 310560 88 8379 290704 2.80 299083 89 8437 289086 2.84 297523 90 8592 290702 2.87 299294 91 8061 289254 2.71 297315 92 7784 284750 2.66 292534 93 7706 280030 2.68 287736 94 7376 277848 2.59 285224 95 7743 273701 2.75 281444 96 7352 267492 2.67 274844 97 6937 266652 2.54 273589 98 6738 250753 2.62 257491 99 4774 0 100.00 4774