Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/leftover/EPI-42_S39_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/leftover/EPI-42_S39_L005_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 29623269
Paired-end alignments with a unique best hit 16937620
Pairs without alignments under any condition 7361312
Pairs that did not map uniquely 5324337
Genomic sequence context not extractable (edges of chromosomes) 59543

Cytosine Methylation

Total C's analysed 498102791
Methylated C's in CpG context 19986040
Methylated C's in CHG context 2650134
Methylated C's in CHH context 9653800
Methylated C's in Unknown context 285267
Unmethylated C's in CpG context 50970977
Unmethylated C's in CHG context 106884767
Unmethylated C's in CHH context 307957073
Unmethylated C's in Unknown context 2192335
Percentage methylation (CpG context) 28.2%
Percentage methylation (CHG context) 2.4%
Percentage methylation (CHH context) 3.0%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 8423001 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 8455076 original bottom strand