EPI-41_S38_L005_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8419632 lines in total Total number of methylation call strings processed: 16839264 Final Cytosine Methylation Report ================================= Total number of C's analysed: 184279574 Total methylated C's in CpG context: 7231139 Total methylated C's in CHG context: 1192911 Total methylated C's in CHH context: 8090852 Total C to T conversions in CpG context: 17777822 Total C to T conversions in CHG context: 37522164 Total C to T conversions in CHH context: 112464686 C methylated in CpG context: 28.9% C methylated in CHG context: 3.1% C methylated in CHH context: 6.7%