CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 134322 174065 43.56 308387 2 128146 190200 40.25 318346 3 124268 176864 41.27 301132 4 129787 154353 45.68 284140 5 129031 136895 48.52 265926 6 126151 114859 52.34 241010 7 141742 115485 55.10 257227 8 65604 134793 32.74 200397 9 58487 124196 32.02 182683 10 59001 121240 32.73 180241 11 62132 124529 33.29 186661 12 61873 124130 33.26 186003 13 60095 125350 32.41 185445 14 57696 128731 30.95 186427 15 56538 129701 30.36 186239 16 52519 129915 28.79 182434 17 49518 125075 28.36 174593 18 52603 128886 28.98 181489 19 50059 127805 28.14 177864 20 49918 130701 27.64 180619 21 50605 131595 27.77 182200 22 50063 129817 27.83 179880 23 49829 128971 27.87 178800 24 49747 129419 27.77 179166 25 48617 127859 27.55 176476 26 49020 128024 27.69 177044 27 47920 130578 26.85 178498 28 50091 130967 27.67 181058 29 48387 129768 27.16 178155 30 47465 130653 26.65 178118 31 48704 129044 27.40 177748 32 47969 126840 27.44 174809 33 48166 129048 27.18 177214 34 48920 129302 27.45 178222 35 48205 129031 27.20 177236 36 47492 129982 26.76 177474 37 45808 127063 26.50 172871 38 45688 125929 26.62 171617 39 46999 127108 26.99 174107 40 46856 125802 27.14 172658 41 46102 126029 26.78 172131 42 47239 129925 26.66 177164 43 46440 127307 26.73 173747 44 45992 126033 26.74 172025 45 46770 126472 27.00 173242 46 47213 127144 27.08 174357 47 46743 124502 27.30 171245 48 45559 125054 26.70 170613 49 48465 125078 27.93 173543 50 45803 125177 26.79 170980 51 46056 125093 26.91 171149 52 46375 127699 26.64 174074 53 45651 123150 27.04 168801 54 44731 123509 26.59 168240 55 44868 121778 26.92 166646 56 44884 121061 27.05 165945 57 45927 122336 27.29 168263 58 46532 122484 27.53 169016 59 47520 121456 28.12 168976 60 45923 122527 27.26 168450 61 46644 120292 27.94 166936 62 45896 120406 27.60 166302 63 44448 120297 26.98 164745 64 43809 118879 26.93 162688 65 44377 118640 27.22 163017 66 45211 118321 27.65 163532 67 44536 116094 27.73 160630 68 43194 115459 27.23 158653 69 42409 114061 27.10 156470 70 42205 113483 27.11 155688 71 41289 109879 27.31 151168 72 40647 110682 26.86 151329 73 40623 108996 27.15 149619 74 40134 108859 26.94 148993 75 39196 109127 26.43 148323 76 38932 108356 26.43 147288 77 39443 106365 27.05 145808 78 39503 107970 26.79 147473 79 38852 105791 26.86 144643 80 37868 104899 26.52 142767 81 36872 103529 26.26 140401 82 36052 102704 25.98 138756 83 37371 103544 26.52 140915 84 36729 102650 26.35 139379 85 36311 100817 26.48 137128 86 35234 100336 25.99 135570 87 34413 98418 25.91 132831 88 34685 97762 26.19 132447 89 34016 96295 26.10 130311 90 33944 97241 25.87 131185 91 33212 95075 25.89 128287 92 32792 94457 25.77 127249 93 32874 93993 25.91 126867 94 32629 93231 25.92 125860 95 31840 92009 25.71 123849 96 32015 92521 25.71 124536 97 31188 89081 25.93 120269 98 29013 84323 25.60 113336 99 23409 67529 25.74 90938 100 29626 83252 26.25 112878 101 27644 82208 25.16 109852 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 177434 253100 41.21 430534 2 107225 244213 30.51 351438 3 46681 241235 16.21 287916 4 29095 242629 10.71 271724 5 20173 216648 8.52 236821 6 19311 206125 8.57 225436 7 11607 265523 4.19 277130 8 6518 288244 2.21 294762 9 4955 276086 1.76 281041 10 5240 265547 1.94 270787 11 6014 266699 2.21 272713 12 5699 265517 2.10 271216 13 5041 257489 1.92 262530 14 5002 260797 1.88 265799 15 4989 266910 1.83 271899 16 4556 266331 1.68 270887 17 6088 262330 2.27 268418 18 4664 261103 1.75 265767 19 4158 262845 1.56 267003 20 4619 279390 1.63 284009 21 4512 282047 1.57 286559 22 5084 275889 1.81 280973 23 5197 280236 1.82 285433 24 4745 282869 1.65 287614 25 4725 273663 1.70 278388 26 7022 276798 2.47 283820 27 4574 280687 1.60 285261 28 4374 281337 1.53 285711 29 5960 284070 2.05 290030 30 4352 283636 1.51 287988 31 4301 278196 1.52 282497 32 4235 281048 1.48 285283 33 4586 282046 1.60 286632 34 4626 276490 1.65 281116 35 5846 278897 2.05 284743 36 4481 279919 1.58 284400 37 4456 270593 1.62 275049 38 5583 276593 1.98 282176 39 4386 273747 1.58 278133 40 4326 275116 1.55 279442 41 4262 276194 1.52 280456 42 4261 275217 1.52 279478 43 4029 269300 1.47 273329 44 4172 273855 1.50 278027 45 4403 273600 1.58 278003 46 4346 270353 1.58 274699 47 5098 271302 1.84 276400 48 4051 279299 1.43 283350 49 4369 270274 1.59 274643 50 5097 268326 1.86 273423 51 4443 272957 1.60 277400 52 4389 272648 1.58 277037 53 4580 267925 1.68 272505 54 4821 273754 1.73 278575 55 4692 269605 1.71 274297 56 4778 271202 1.73 275980 57 5263 269998 1.91 275261 58 4802 267338 1.76 272140 59 5195 269026 1.89 274221 60 4671 270049 1.70 274720 61 5106 264688 1.89 269794 62 5160 265105 1.91 270265 63 5129 262805 1.91 267934 64 5215 259406 1.97 264621 65 6936 259501 2.60 266437 66 5144 254653 1.98 259797 67 5198 248802 2.05 254000 68 6026 248900 2.36 254926 69 4531 248174 1.79 252705 70 4447 243671 1.79 248118 71 4481 242873 1.81 247354 72 4630 242568 1.87 247198 73 4624 240218 1.89 244842 74 5302 239318 2.17 244620 75 4351 239079 1.79 243430 76 4325 231654 1.83 235979 77 5572 232572 2.34 238144 78 4406 228116 1.89 232522 79 4376 223119 1.92 227495 80 4274 222786 1.88 227060 81 4441 221332 1.97 225773 82 4205 216684 1.90 220889 83 4485 219756 2.00 224241 84 4245 219410 1.90 223655 85 4394 215292 2.00 219686 86 4601 214238 2.10 218839 87 4119 216631 1.87 220750 88 4552 209447 2.13 213999 89 4518 209894 2.11 214412 90 4210 209904 1.97 214114 91 4326 204776 2.07 209102 92 4405 206242 2.09 210647 93 4651 204411 2.22 209062 94 4413 200767 2.15 205180 95 4718 198532 2.32 203250 96 4668 198083 2.30 202751 97 4661 179995 2.52 184656 98 4509 164920 2.66 169429 99 2376 109255 2.13 111631 100 3409 110693 2.99 114102 101 5947 174682 3.29 180629 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 256747 341819 42.89 598566 2 177311 372425 32.25 549736 3 115208 422167 21.44 537375 4 109806 436798 20.09 546604 5 106701 513810 17.20 620511 6 91626 569852 13.85 661478 7 62061 738309 7.75 800370 8 58645 805008 6.79 863653 9 44436 740623 5.66 785059 10 45249 713672 5.96 758921 11 59703 719080 7.67 778783 12 51094 726457 6.57 777551 13 56905 744192 7.10 801097 14 64266 762537 7.77 826803 15 53718 784416 6.41 838134 16 53592 792550 6.33 846142 17 62780 798436 7.29 861216 18 52107 833748 5.88 885855 19 51741 846056 5.76 897797 20 61979 876326 6.61 938305 21 53087 877249 5.71 930336 22 59082 875952 6.32 935034 23 62819 874619 6.70 937438 24 53461 871821 5.78 925282 25 59078 875571 6.32 934649 26 63438 886287 6.68 949725 27 54387 890057 5.76 944444 28 53515 893465 5.65 946980 29 62817 892956 6.57 955773 30 53728 880718 5.75 934446 31 54860 870492 5.93 925352 32 58686 873016 6.30 931702 33 53167 874644 5.73 927811 34 61283 878437 6.52 939720 35 63210 873534 6.75 936744 36 54062 880745 5.78 934807 37 52862 873246 5.71 926108 38 63589 876661 6.76 940250 39 53526 867974 5.81 921500 40 54230 864585 5.90 918815 41 63202 871037 6.77 934239 42 56092 871863 6.04 927955 43 59628 863282 6.46 922910 44 61681 870868 6.61 932549 45 56644 861049 6.17 917693 46 54909 864160 5.97 919069 47 59923 861574 6.50 921497 48 50347 863053 5.51 913400 49 51331 851933 5.68 903264 50 59008 844641 6.53 903649 51 50696 838902 5.70 889598 52 54539 836636 6.12 891175 53 59098 828591 6.66 887689 54 51296 831649 5.81 882945 55 52281 823426 5.97 875707 56 58926 823699 6.68 882625 57 50460 823841 5.77 874301 58 50529 823472 5.78 874001 59 57918 823422 6.57 881340 60 48629 813206 5.64 861835 61 53842 804691 6.27 858533 62 55993 794776 6.58 850769 63 48763 790190 5.81 838953 64 52916 781958 6.34 834874 65 53656 778558 6.45 832214 66 47381 772597 5.78 819978 67 47005 765511 5.79 812516 68 52157 759688 6.42 811845 69 46119 756601 5.75 802720 70 46924 749407 5.89 796331 71 51647 747863 6.46 799510 72 46347 746714 5.84 793061 73 51646 732936 6.58 784582 74 52277 731242 6.67 783519 75 45691 722943 5.94 768634 76 45234 718404 5.92 763638 77 52638 712374 6.88 765012 78 42597 706764 5.68 749361 79 44673 699655 6.00 744328 80 50896 694808 6.83 745704 81 46269 683548 6.34 729817 82 47442 680392 6.52 727834 83 50495 681230 6.90 731725 84 45147 671844 6.30 716991 85 42994 660234 6.11 703228 86 47100 654354 6.71 701454 87 40693 650158 5.89 690851 88 41617 638521 6.12 680138 89 47166 638940 6.87 686106 90 40252 634889 5.96 675141 91 42927 628272 6.40 671199 92 45189 625180 6.74 670369 93 39795 618631 6.04 658426 94 40429 612658 6.19 653087 95 45459 604615 6.99 650074 96 37974 595095 6.00 633069 97 37367 578984 6.06 616351 98 40255 536656 6.98 576911 99 23575 378970 5.86 402545 100 26389 339526 7.21 365915 101 38435 532164 6.74 570599 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 114717 127057 47.45 241774 2 99270 109355 47.58 208625 3 105058 122431 46.18 227489 4 96431 136994 41.31 233425 5 42954 175606 19.65 218560 6 26440 96812 21.45 123252 7 22780 102578 18.17 125358 8 23845 96243 19.86 120088 9 20925 82087 20.31 103012 10 22921 91217 20.08 114138 11 24670 90543 21.41 115213 12 23611 87011 21.34 110622 13 24565 83685 22.69 108250 14 25091 87329 22.32 112420 15 24730 79139 23.81 103869 16 22641 75500 23.07 98141 17 28621 82962 25.65 111583 18 27156 80750 25.17 107906 19 26141 79287 24.80 105428 20 24159 76310 24.05 100469 21 25336 73798 25.56 99134 22 25090 76946 24.59 102036 23 23619 72767 24.50 96386 24 22592 70789 24.19 93381 25 24893 73133 25.39 98026 26 22832 69693 24.68 92525 27 24911 70023 26.24 94934 28 22757 66577 25.47 89334 29 23948 69928 25.51 93876 30 22693 65170 25.83 87863 31 21731 67500 24.35 89231 32 20918 63250 24.85 84168 33 23958 64278 27.15 88236 34 23083 67610 25.45 90693 35 27645 71698 27.83 99343 36 22873 62775 26.71 85648 37 23701 65488 26.57 89189 38 21286 62324 25.46 83610 39 21925 60912 26.47 82837 40 23803 61359 27.95 85162 41 21369 60530 26.09 81899 42 21058 62671 25.15 83729 43 20863 60298 25.71 81161 44 19745 58011 25.39 77756 45 23845 63353 27.35 87198 46 19540 54246 26.48 73786 47 19534 55815 25.92 75349 48 19783 55381 26.32 75164 49 19089 58134 24.72 77223 50 17961 51869 25.72 69830 51 17947 51189 25.96 69136 52 18588 52799 26.04 71387 53 18587 51858 26.39 70445 54 17891 51526 25.77 69417 55 18057 49272 26.82 67329 56 16635 48854 25.40 65489 57 17296 49475 25.90 66771 58 16628 48864 25.39 65492 59 16016 45389 26.08 61405 60 16301 45643 26.32 61944 61 14767 44881 24.76 59648 62 14938 42974 25.79 57912 63 16079 43106 27.17 59185 64 14989 43266 25.73 58255 65 14917 40589 26.87 55506 66 15740 42738 26.92 58478 67 14418 43762 24.78 58180 68 15559 44534 25.89 60093 69 14038 41356 25.34 55394 70 13924 40521 25.57 54445 71 14151 38048 27.11 52199 72 13477 36917 26.74 50394 73 13343 38144 25.92 51487 74 12321 37055 24.95 49376 75 12616 37480 25.18 50096 76 12760 36066 26.13 48826 77 12295 36329 25.29 48624 78 12310 36410 25.27 48720 79 11962 34536 25.73 46498 80 11775 34172 25.63 45947 81 11668 34453 25.30 46121 82 11953 34657 25.64 46610 83 11954 32549 26.86 44503 84 13184 36107 26.75 49291 85 11404 33675 25.30 45079 86 11100 32545 25.43 43645 87 10956 32300 25.33 43256 88 11179 31754 26.04 42933 89 11637 32601 26.31 44238 90 11491 32032 26.40 43523 91 10791 30726 25.99 41517 92 10658 30949 25.62 41607 93 10467 30606 25.48 41073 94 10843 30866 26.00 41709 95 10491 29562 26.19 40053 96 10094 30005 25.17 40099 97 11316 31634 26.35 42950 98 9948 27608 26.49 37556 99 8654 0 100.00 8654 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 34688 158517 17.95 193205 2 34171 159280 17.66 193451 3 32436 164310 16.49 196746 4 34582 179858 16.13 214440 5 5340 323352 1.62 328692 6 3815 396284 0.95 400099 7 2581 222877 1.14 225458 8 2592 239826 1.07 242418 9 2621 196173 1.32 198794 10 2551 187645 1.34 190196 11 3827 255564 1.48 259391 12 2709 202134 1.32 204843 13 2506 201722 1.23 204228 14 2585 192639 1.32 195224 15 2706 186579 1.43 189285 16 2354 173344 1.34 175698 17 2651 186377 1.40 189028 18 3876 163594 2.31 167470 19 2628 165102 1.57 167730 20 2771 163329 1.67 166100 21 4162 153465 2.64 157627 22 2901 172842 1.65 175743 23 2771 169738 1.61 172509 24 2364 150531 1.55 152895 25 2451 154043 1.57 156494 26 2784 162561 1.68 165345 27 2690 149493 1.77 152183 28 2602 144189 1.77 146791 29 2770 156571 1.74 159341 30 2760 147816 1.83 150576 31 2387 141637 1.66 144024 32 2455 144668 1.67 147123 33 2724 171343 1.56 174067 34 2531 141726 1.75 144257 35 2577 146132 1.73 148709 36 2576 144455 1.75 147031 37 2244 134028 1.65 136272 38 2733 144359 1.86 147092 39 2690 134481 1.96 137171 40 2608 132187 1.93 134795 41 2701 127323 2.08 130024 42 2707 118602 2.23 121309 43 2695 125224 2.11 127919 44 2455 122603 1.96 125058 45 2481 111997 2.17 114478 46 2392 113498 2.06 115890 47 2794 116186 2.35 118980 48 2608 110688 2.30 113296 49 2386 116375 2.01 118761 50 2667 112743 2.31 115410 51 2397 104054 2.25 106451 52 2470 103553 2.33 106023 53 2705 114409 2.31 117114 54 2410 104085 2.26 106495 55 2422 105618 2.24 108040 56 2335 101634 2.25 103969 57 3152 99083 3.08 102235 58 2191 99829 2.15 102020 59 1812 99434 1.79 101246 60 2159 96315 2.19 98474 61 1470 95650 1.51 97120 62 1550 100058 1.53 101608 63 1420 99626 1.41 101046 64 1307 89343 1.44 90650 65 1465 94967 1.52 96432 66 1285 87016 1.46 88301 67 1369 95307 1.42 96676 68 1323 92891 1.40 94214 69 1389 89105 1.53 90494 70 1209 90006 1.33 91215 71 1232 91302 1.33 92534 72 1140 84264 1.33 85404 73 1155 83678 1.36 84833 74 1140 86571 1.30 87711 75 1104 80766 1.35 81870 76 1072 79927 1.32 80999 77 1164 85042 1.35 86206 78 1193 81636 1.44 82829 79 1085 80130 1.34 81215 80 1036 77644 1.32 78680 81 1170 75029 1.54 76199 82 1112 73779 1.48 74891 83 1225 75585 1.59 76810 84 1088 72684 1.47 73772 85 1102 82441 1.32 83543 86 1083 73013 1.46 74096 87 1162 72467 1.58 73629 88 1069 69553 1.51 70622 89 1200 74430 1.59 75630 90 1165 72988 1.57 74153 91 1052 74429 1.39 75481 92 1010 70448 1.41 71458 93 1091 67784 1.58 68875 94 1018 66843 1.50 67861 95 1117 68074 1.61 69191 96 1296 65353 1.94 66649 97 1027 64625 1.56 65652 98 925 61874 1.47 62799 99 934 0 100.00 934 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 80256 210849 27.57 291105 2 73942 172940 29.95 246882 3 78360 176325 30.77 254685 4 79028 174554 31.16 253582 5 30024 351527 7.87 381551 6 33318 485138 6.43 518456 7 33497 649253 4.91 682750 8 30364 643356 4.51 673720 9 36358 604602 5.67 640960 10 32459 617192 5.00 649651 11 32645 608596 5.09 641241 12 31233 568918 5.20 600151 13 30453 589563 4.91 620016 14 30379 593920 4.87 624299 15 29166 614496 4.53 643662 16 26978 587696 4.39 614674 17 29463 588908 4.76 618371 18 28411 586903 4.62 615314 19 26049 543813 4.57 569862 20 30704 577498 5.05 608202 21 29158 537689 5.14 566847 22 30840 520820 5.59 551660 23 29134 513422 5.37 542556 24 26634 489363 5.16 515997 25 30105 488393 5.81 518498 26 27330 483725 5.35 511055 27 28897 518116 5.28 547013 28 27340 495217 5.23 522557 29 27321 488758 5.29 516079 30 29864 469416 5.98 499280 31 27581 455352 5.71 482933 32 26652 440684 5.70 467336 33 28916 435999 6.22 464915 34 26947 435452 5.83 462399 35 26888 450655 5.63 477543 36 25535 449080 5.38 474615 37 24870 439695 5.35 464565 38 27105 456370 5.61 483475 39 27593 418301 6.19 445894 40 25666 438106 5.53 463772 41 26850 412433 6.11 439283 42 26688 420761 5.96 447449 43 26228 398986 6.17 425214 44 23271 397746 5.53 421017 45 24897 396463 5.91 421360 46 23865 399065 5.64 422930 47 22117 390688 5.36 412805 48 23512 378416 5.85 401928 49 22266 383541 5.49 405807 50 22625 377201 5.66 399826 51 22967 367304 5.88 390271 52 21038 346306 5.73 367344 53 20675 347557 5.61 368232 54 19608 338722 5.47 358330 55 19350 348879 5.25 368229 56 19901 338877 5.55 358778 57 18960 346193 5.19 365153 58 17660 334813 5.01 352473 59 18763 320957 5.52 339720 60 17754 328451 5.13 346205 61 18822 314937 5.64 333759 62 17270 311761 5.25 329031 63 16627 314268 5.02 330895 64 17648 302350 5.52 319998 65 15896 308290 4.90 324186 66 16380 297278 5.22 313658 67 15755 298355 5.02 314110 68 15465 308913 4.77 324378 69 16866 300379 5.32 317245 70 15634 289361 5.13 304995 71 15209 284872 5.07 300081 72 16211 283478 5.41 299689 73 15674 279480 5.31 295154 74 14508 278878 4.95 293386 75 15019 278401 5.12 293420 76 13904 268168 4.93 282072 77 15549 267246 5.50 282795 78 15209 270293 5.33 285502 79 14532 275050 5.02 289582 80 15186 264512 5.43 279698 81 15139 265368 5.40 280507 82 14740 259788 5.37 274528 83 13484 259808 4.93 273292 84 14461 257969 5.31 272430 85 13304 252197 5.01 265501 86 13116 251793 4.95 264909 87 13503 249130 5.14 262633 88 12594 241083 4.96 253677 89 12966 238536 5.16 251502 90 13193 239711 5.22 252904 91 12579 237405 5.03 249984 92 11762 235900 4.75 247662 93 11738 232934 4.80 244672 94 11175 230966 4.62 242141 95 11645 225032 4.92 236677 96 10981 222761 4.70 233742 97 10306 221669 4.44 231975 98 10107 209192 4.61 219299 99 7167 0 100.00 7167