Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-41_S38_L005_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-41_S38_L005_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 25055317
Paired-end alignments with a unique best hit 13533998
Pairs without alignments under any condition 7395470
Pairs that did not map uniquely 4125849
Genomic sequence context not extractable (edges of chromosomes) 82651

Cytosine Methylation

Total C's analysed 410166096
Methylated C's in CpG context 15066999
Methylated C's in CHG context 2345442
Methylated C's in CHH context 13871302
Methylated C's in Unknown context 474040
Unmethylated C's in CpG context 43389569
Unmethylated C's in CHG context 86494843
Unmethylated C's in CHH context 248997941
Unmethylated C's in Unknown context 2036332
Percentage methylation (CpG context) 25.8%
Percentage methylation (CHG context) 2.6%
Percentage methylation (CHH context) 5.3%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 6694793 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 6756554 original bottom strand