EPI-230_S37_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 9323642 lines in total Total number of methylation call strings processed: 18647284 Final Cytosine Methylation Report ================================= Total number of C's analysed: 194682345 Total methylated C's in CpG context: 7215577 Total methylated C's in CHG context: 1012353 Total methylated C's in CHH context: 4664377 Total C to T conversions in CpG context: 20277098 Total C to T conversions in CHG context: 40592876 Total C to T conversions in CHH context: 120920064 C methylated in CpG context: 26.2% C methylated in CHG context: 2.4% C methylated in CHH context: 3.7%