CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 130571 199898 39.51 330469 2 124433 229098 35.20 353531 3 122911 214711 36.40 337622 4 128288 188962 40.44 317250 5 127626 166115 43.45 293741 6 129267 136909 48.56 266176 7 144446 133625 51.95 278071 8 68650 155234 30.66 223884 9 61286 145883 29.58 207169 10 60826 143741 29.73 204567 11 63195 146341 30.16 209536 12 61819 147356 29.55 209175 13 60550 148780 28.93 209330 14 58180 151435 27.76 209615 15 57736 152010 27.53 209746 16 53932 152032 26.19 205964 17 51186 148165 25.68 199351 18 53370 152513 25.92 205883 19 51627 151904 25.37 203531 20 51922 153883 25.23 205805 21 52527 154928 25.32 207455 22 51613 153316 25.19 204929 23 50934 152518 25.03 203452 24 50281 153110 24.72 203391 25 49935 151925 24.74 201860 26 50328 150893 25.01 201221 27 49528 154959 24.22 204487 28 50955 153774 24.89 204729 29 49653 152912 24.51 202565 30 49076 154281 24.13 203357 31 49781 151339 24.75 201120 32 48853 149822 24.59 198675 33 49549 152102 24.57 201651 34 49720 150454 24.84 200174 35 49779 151212 24.77 200991 36 48887 153953 24.10 202840 37 47785 150581 24.09 198366 38 47409 148847 24.16 196256 39 48701 150925 24.40 199626 40 48112 149037 24.40 197149 41 48208 148744 24.48 196952 42 49027 152248 24.36 201275 43 48612 149495 24.54 198107 44 47451 148770 24.18 196221 45 48466 149005 24.54 197471 46 48319 150903 24.25 199222 47 47514 147319 24.39 194833 48 47134 148750 24.06 195884 49 49495 147707 25.10 197202 50 47584 148501 24.27 196085 51 48025 147420 24.57 195445 52 48431 150478 24.35 198909 53 47100 145010 24.52 192110 54 46189 145319 24.12 191508 55 46518 143218 24.52 189736 56 46217 142425 24.50 188642 57 47418 144382 24.72 191800 58 48249 144571 25.02 192820 59 48872 142929 25.48 191801 60 47759 143732 24.94 191491 61 48452 141448 25.51 189900 62 46988 142549 24.79 189537 63 46507 140992 24.80 187499 64 46226 138881 24.97 185107 65 46350 137462 25.22 183812 66 46342 138115 25.12 184457 67 46151 135204 25.45 181355 68 44722 134728 24.92 179450 69 44837 132759 25.25 177596 70 43887 132596 24.87 176483 71 42995 128554 25.06 171549 72 42047 128922 24.59 170969 73 41773 126984 24.75 168757 74 41261 125850 24.69 167111 75 40240 125726 24.25 165966 76 40185 124770 24.36 164955 77 40509 122900 24.79 163409 78 40339 123313 24.65 163652 79 39713 121338 24.66 161051 80 38505 120300 24.25 158805 81 37813 118977 24.12 156790 82 36781 117531 23.84 154312 83 37751 118048 24.23 155799 84 37260 117425 24.09 154685 85 37037 114525 24.44 151562 86 35855 113077 24.07 148932 87 34982 112282 23.75 147264 88 35052 112740 23.72 147792 89 34390 109666 23.87 144056 90 34230 109515 23.81 143745 91 33578 107223 23.85 140801 92 33186 107211 23.64 140397 93 33056 106672 23.66 139728 94 32783 105813 23.65 138596 95 32192 103776 23.68 135968 96 32163 103411 23.72 135574 97 31171 100373 23.70 131544 98 29566 94795 23.77 124361 99 23278 74188 23.88 97466 100 30453 94334 24.40 124787 101 29038 94814 23.45 123852 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 171249 296049 36.65 467298 2 96820 294702 24.73 391522 3 42754 285434 13.03 328188 4 24542 279276 8.08 303818 5 16471 253343 6.10 269814 6 14926 235339 5.96 250265 7 10148 294074 3.34 304222 8 5046 319630 1.55 324676 9 4232 305857 1.36 310089 10 4217 296218 1.40 300435 11 4508 296990 1.50 301498 12 4446 297144 1.47 301590 13 4198 287218 1.44 291416 14 3969 288808 1.36 292777 15 4128 296601 1.37 300729 16 3517 297721 1.17 301238 17 4424 293875 1.48 298299 18 3682 293189 1.24 296871 19 3171 294421 1.07 297592 20 3347 310018 1.07 313365 21 3320 312699 1.05 316019 22 3574 306739 1.15 310313 23 3738 311537 1.19 315275 24 3354 316538 1.05 319892 25 3471 306787 1.12 310258 26 4502 308791 1.44 313293 27 3403 315106 1.07 318509 28 3376 312916 1.07 316292 29 4030 316924 1.26 320954 30 3289 317387 1.03 320676 31 3313 308858 1.06 312171 32 3360 315609 1.05 318969 33 3500 313426 1.10 316926 34 3587 309343 1.15 312930 35 3982 310835 1.26 314817 36 3381 314535 1.06 317916 37 3375 302916 1.10 306291 38 3947 308503 1.26 312450 39 3478 307205 1.12 310683 40 3395 308384 1.09 311779 41 3469 307367 1.12 310836 42 3172 308471 1.02 311643 43 3243 300273 1.07 303516 44 3336 306807 1.08 310143 45 3363 305325 1.09 308688 46 3336 302861 1.09 306197 47 3706 304570 1.20 308276 48 3309 312386 1.05 315695 49 3518 303016 1.15 306534 50 3654 302359 1.19 306013 51 3480 305274 1.13 308754 52 3559 304757 1.15 308316 53 3585 299530 1.18 303115 54 3734 306226 1.20 309960 55 3592 300013 1.18 303605 56 3795 302304 1.24 306099 57 3929 302030 1.28 305959 58 4087 297869 1.35 301956 59 4156 299178 1.37 303334 60 4042 300576 1.33 304618 61 4178 294542 1.40 298720 62 4318 292907 1.45 297225 63 4471 291368 1.51 295839 64 4030 288756 1.38 292786 65 4810 287623 1.64 292433 66 4213 283260 1.47 287473 67 4155 274873 1.49 279028 68 4523 276432 1.61 280955 69 3893 274769 1.40 278662 70 3947 268100 1.45 272047 71 3898 267768 1.43 271666 72 3856 267278 1.42 271134 73 3957 263317 1.48 267274 74 4322 262408 1.62 266730 75 3732 261049 1.41 264781 76 3831 252531 1.49 256362 77 4197 253228 1.63 257425 78 3801 249097 1.50 252898 79 3695 244589 1.49 248284 80 3774 243513 1.53 247287 81 3612 242758 1.47 246370 82 3715 236312 1.55 240027 83 3800 238703 1.57 242503 84 3587 238340 1.48 241927 85 3628 232440 1.54 236068 86 3798 232085 1.61 235883 87 3688 233830 1.55 237518 88 3539 228397 1.53 231936 89 3637 226579 1.58 230216 90 3589 225191 1.57 228780 91 3579 220804 1.60 224383 92 3688 221488 1.64 225176 93 3839 219080 1.72 222919 94 3713 214913 1.70 218626 95 3644 212732 1.68 216376 96 3759 210916 1.75 214675 97 3706 192014 1.89 195720 98 3480 177404 1.92 180884 99 2092 114979 1.79 117071 100 2638 115984 2.22 118622 101 5221 193104 2.63 198325 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 237848 406914 36.89 644762 2 134184 440938 23.33 575122 3 77871 484874 13.84 562745 4 68591 510130 11.85 578721 5 66889 601310 10.01 668199 6 55851 656212 7.84 712063 7 40869 828925 4.70 869794 8 34486 903339 3.68 937825 9 26179 831331 3.05 857510 10 26471 800259 3.20 826730 11 34252 802264 4.09 836516 12 29368 808804 3.50 838172 13 32069 822984 3.75 855053 14 36220 844600 4.11 880820 15 30250 866139 3.37 896389 16 29530 876811 3.26 906341 17 35190 884314 3.83 919504 18 29013 916533 3.07 945546 19 28969 936449 3.00 965418 20 34394 963204 3.45 997598 21 29705 965456 2.98 995161 22 32030 968399 3.20 1000429 23 35162 965139 3.52 1000301 24 29756 964291 2.99 994047 25 31411 969152 3.14 1000563 26 35000 976400 3.46 1011400 27 30150 981390 2.98 1011540 28 29954 987992 2.94 1017946 29 34673 984102 3.40 1018775 30 29659 976873 2.95 1006532 31 29878 968465 2.99 998343 32 32749 966117 3.28 998866 33 29053 971021 2.91 1000074 34 32696 974124 3.25 1006820 35 34708 967706 3.46 1002414 36 29443 975248 2.93 1004691 37 29083 966802 2.92 995885 38 34689 973020 3.44 1007709 39 28957 963340 2.92 992297 40 29694 960223 3.00 989917 41 34404 965285 3.44 999689 42 30286 968533 3.03 998819 43 31738 959975 3.20 991713 44 33328 965793 3.34 999121 45 30632 955104 3.11 985736 46 29567 959394 2.99 988961 47 32618 957617 3.29 990235 48 27900 956732 2.83 984632 49 28677 947660 2.94 976337 50 32260 945920 3.30 978180 51 27682 935003 2.88 962685 52 29236 930966 3.04 960202 53 32133 925161 3.36 957294 54 28070 923344 2.95 951414 55 29015 918299 3.06 947314 56 32039 914208 3.39 946247 57 27643 917436 2.92 945079 58 27991 912332 2.98 940323 59 32423 914081 3.43 946504 60 27311 902279 2.94 929590 61 29225 891494 3.17 920719 62 31429 881321 3.44 912750 63 27270 871808 3.03 899078 64 28686 864317 3.21 893003 65 30183 857126 3.40 887309 66 26616 852059 3.03 878675 67 26513 840965 3.06 867478 68 29142 835016 3.37 864158 69 25953 828953 3.04 854906 70 25784 821425 3.04 847209 71 29204 817037 3.45 846241 72 25608 813833 3.05 839441 73 27667 798957 3.35 826624 74 28771 795662 3.49 824433 75 25049 786995 3.08 812044 76 25182 782522 3.12 807704 77 28879 772572 3.60 801451 78 23473 768436 2.96 791909 79 24527 761162 3.12 785689 80 27576 755340 3.52 782916 81 24606 741952 3.21 766558 82 25487 734276 3.35 759763 83 27568 732116 3.63 759684 84 24267 722255 3.25 746522 85 23796 712874 3.23 736670 86 25743 705704 3.52 731447 87 22431 698368 3.11 720799 88 22349 692325 3.13 714674 89 26110 682034 3.69 708144 90 22557 679475 3.21 702032 91 23089 670318 3.33 693407 92 24795 666805 3.59 691600 93 22332 660311 3.27 682643 94 22337 652421 3.31 674758 95 24908 643962 3.72 668870 96 21264 633089 3.25 654353 97 21173 615924 3.32 637097 98 22919 574898 3.83 597817 99 13127 398594 3.19 411721 100 14508 352013 3.96 366521 101 22701 581755 3.76 604456 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 112295 139322 44.63 251617 2 98336 122261 44.58 220597 3 105388 135927 43.67 241315 4 97485 152600 38.98 250085 5 41337 195441 17.46 236778 6 25273 106090 19.24 131363 7 21997 112843 16.31 134840 8 23372 106620 17.98 129992 9 20127 92159 17.92 112286 10 21765 101944 17.59 123709 11 23387 100694 18.85 124081 12 22286 96644 18.74 118930 13 23500 93435 20.10 116935 14 24179 95570 20.19 119749 15 23914 87937 21.38 111851 16 22190 84037 20.89 106227 17 27399 91396 23.06 118795 18 25745 87278 22.78 113023 19 24601 86280 22.19 110881 20 23252 83852 21.71 107104 21 23845 80820 22.78 104665 22 23747 83803 22.08 107550 23 22491 80541 21.83 103032 24 21376 76989 21.73 98365 25 23649 80688 22.67 104337 26 21808 76569 22.17 98377 27 23262 77736 23.03 100998 28 21469 73060 22.71 94529 29 22370 77295 22.45 99665 30 21632 71898 23.13 93530 31 20550 73670 21.81 94220 32 19962 69458 22.32 89420 33 22314 70066 24.15 92380 34 21655 72940 22.89 94595 35 25776 77988 24.84 103764 36 21309 69092 23.57 90401 37 22308 70957 23.92 93265 38 20107 68611 22.66 88718 39 20691 66586 23.71 87277 40 22249 66748 25.00 88997 41 19613 64778 23.24 84391 42 19951 67329 22.86 87280 43 19840 65043 23.37 84883 44 18319 62237 22.74 80556 45 22338 67110 24.97 89448 46 17944 58663 23.42 76607 47 18753 61004 23.51 79757 48 18391 59100 23.73 77491 49 17588 62247 22.03 79835 50 16729 56369 22.89 73098 51 16686 55271 23.19 71957 52 17283 56036 23.57 73319 53 16990 54875 23.64 71865 54 16601 54786 23.25 71387 55 16548 52476 23.97 69024 56 15425 52258 22.79 67683 57 16081 52248 23.53 68329 58 15107 51754 22.59 66861 59 14698 47477 23.64 62175 60 14913 48122 23.66 63035 61 13387 46973 22.18 60360 62 13696 45093 23.30 58789 63 14524 45174 24.33 59698 64 13424 45536 22.77 58960 65 13122 42697 23.51 55819 66 13898 44434 23.83 58332 67 13009 45371 22.28 58380 68 14010 46264 23.24 60274 69 12927 43481 22.92 56408 70 12545 42683 22.71 55228 71 12542 39041 24.31 51583 72 11864 38113 23.74 49977 73 11951 39709 23.13 51660 74 11069 38436 22.36 49505 75 11561 38803 22.95 50364 76 11513 36733 23.86 48246 77 11265 37609 23.05 48874 78 11309 37038 23.39 48347 79 10410 36048 22.41 46458 80 10308 35247 22.63 45555 81 10390 35446 22.67 45836 82 10548 35156 23.08 45704 83 10425 33716 23.62 44141 84 11497 36285 24.06 47782 85 10055 34151 22.75 44206 86 9829 33669 22.60 43498 87 9889 32795 23.17 42684 88 9885 32453 23.35 42338 89 10301 33193 23.68 43494 90 10088 32401 23.74 42489 91 9519 31771 23.05 41290 92 9068 31404 22.41 40472 93 9175 31210 22.72 40385 94 9573 30977 23.61 40550 95 9475 30040 23.98 39515 96 9109 29898 23.35 39007 97 9837 31971 23.53 41808 98 8839 28855 23.45 37694 99 8086 0 100.00 8086 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 35042 169048 17.17 204090 2 34810 173254 16.73 208064 3 33388 178301 15.77 211689 4 35978 188929 16.00 224907 5 4359 346787 1.24 351146 6 2986 413848 0.72 416834 7 1903 233275 0.81 235178 8 1870 248848 0.75 250718 9 1764 207391 0.84 209155 10 1782 198523 0.89 200305 11 2489 266819 0.92 269308 12 1856 210542 0.87 212398 13 1766 208308 0.84 210074 14 1893 203299 0.92 205192 15 1835 196962 0.92 198797 16 1677 182284 0.91 183961 17 2063 196383 1.04 198446 18 2242 171319 1.29 173561 19 1917 172970 1.10 174887 20 1875 171223 1.08 173098 21 2393 161356 1.46 163749 22 2142 177899 1.19 180041 23 1990 175730 1.12 177720 24 1794 157960 1.12 159754 25 1890 160287 1.17 162177 26 1983 170305 1.15 172288 27 1902 157599 1.19 159501 28 1847 151225 1.21 153072 29 1874 161828 1.14 163702 30 1902 153086 1.23 154988 31 1838 148900 1.22 150738 32 1895 150494 1.24 152389 33 2040 174383 1.16 176423 34 1844 147875 1.23 149719 35 1970 150289 1.29 152259 36 1816 149005 1.20 150821 37 1897 138806 1.35 140703 38 2130 147972 1.42 150102 39 2071 140104 1.46 142175 40 1918 134551 1.41 136469 41 2139 130849 1.61 132988 42 2041 122134 1.64 124175 43 2266 128248 1.74 130514 44 1906 126928 1.48 128834 45 1744 115173 1.49 116917 46 1846 115874 1.57 117720 47 2052 118803 1.70 120855 48 1962 113545 1.70 115507 49 1872 117667 1.57 119539 50 2075 114065 1.79 116140 51 1864 106319 1.72 108183 52 1826 104895 1.71 106721 53 2149 115361 1.83 117510 54 1809 104987 1.69 106796 55 1805 106227 1.67 108032 56 1710 104046 1.62 105756 57 1914 99138 1.89 101052 58 1635 100344 1.60 101979 59 1329 98924 1.33 100253 60 1287 94670 1.34 95957 61 1078 93894 1.14 94972 62 1013 98168 1.02 99181 63 1048 99013 1.05 100061 64 926 88731 1.03 89657 65 969 93742 1.02 94711 66 886 85962 1.02 86848 67 986 93289 1.05 94275 68 922 91773 0.99 92695 69 935 87380 1.06 88315 70 851 87238 0.97 88089 71 885 89909 0.97 90794 72 861 81216 1.05 82077 73 746 82500 0.90 83246 74 769 84066 0.91 84835 75 821 79447 1.02 80268 76 790 78439 1.00 79229 77 821 82635 0.98 83456 78 854 78926 1.07 79780 79 766 78135 0.97 78901 80 751 75582 0.98 76333 81 778 72669 1.06 73447 82 800 71904 1.10 72704 83 774 73758 1.04 74532 84 745 70048 1.05 70793 85 831 77899 1.06 78730 86 755 70968 1.05 71723 87 791 70842 1.10 71633 88 696 67318 1.02 68014 89 787 71810 1.08 72597 90 788 69532 1.12 70320 91 792 71569 1.09 72361 92 709 68618 1.02 69327 93 703 65304 1.07 66007 94 653 64429 1.00 65082 95 740 66004 1.11 66744 96 843 62619 1.33 63462 97 671 62350 1.06 63021 98 630 61428 1.02 62058 99 539 0 100.00 539 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 62067 232775 21.05 294842 2 52640 191990 21.52 244630 3 54444 194430 21.88 248874 4 54611 188768 22.44 243379 5 18556 373373 4.73 391929 6 17683 514068 3.33 531751 7 18858 684747 2.68 703605 8 16787 680430 2.41 697217 9 19948 637438 3.03 657386 10 17717 653255 2.64 670972 11 17293 642213 2.62 659506 12 16323 596825 2.66 613148 13 15741 618387 2.48 634128 14 16528 622502 2.59 639030 15 16309 635890 2.50 652199 16 14756 607635 2.37 622391 17 16159 610307 2.58 626466 18 15422 606065 2.48 621487 19 14222 565952 2.45 580174 20 16295 596185 2.66 612480 21 15548 557696 2.71 573244 22 15866 541848 2.84 557714 23 15648 531985 2.86 547633 24 14503 508129 2.77 522632 25 15555 508165 2.97 523720 26 14830 503171 2.86 518001 27 15586 532540 2.84 548126 28 14613 513201 2.77 527814 29 14835 506161 2.85 520996 30 15595 486546 3.11 502141 31 14773 472257 3.03 487030 32 14432 457426 3.06 471858 33 15613 451593 3.34 467206 34 14481 448744 3.13 463225 35 15109 461401 3.17 476510 36 13961 459449 2.95 473410 37 13927 449482 3.01 463409 38 14527 465463 3.03 479990 39 14638 431210 3.28 445848 40 14055 445170 3.06 459225 41 14251 422399 3.26 436650 42 14008 427732 3.17 441740 43 14092 404142 3.37 418234 44 12955 405654 3.09 418609 45 13651 402341 3.28 415992 46 13061 404643 3.13 417704 47 12515 396836 3.06 409351 48 12733 383120 3.22 395853 49 12329 385885 3.10 398214 50 12108 380440 3.08 392548 51 12365 369611 3.24 381976 52 11293 349838 3.13 361131 53 11463 350885 3.16 362348 54 10840 339862 3.09 350702 55 10760 348795 2.99 359555 56 10532 340946 3.00 351478 57 10401 344329 2.93 354730 58 9669 334234 2.81 343903 59 9867 321783 2.98 331650 60 9324 328443 2.76 337767 61 9740 313145 3.02 322885 62 9021 309911 2.83 318932 63 8809 310302 2.76 319111 64 9035 301603 2.91 310638 65 8384 305527 2.67 313911 66 8726 295679 2.87 304405 67 8194 294716 2.71 302910 68 8361 303298 2.68 311659 69 8470 293984 2.80 302454 70 8160 286599 2.77 294759 71 7890 281854 2.72 289744 72 8302 279789 2.88 288091 73 8102 276090 2.85 284192 74 7667 275326 2.71 282993 75 7782 275171 2.75 282953 76 7433 265496 2.72 272929 77 8049 263413 2.97 271462 78 7768 265201 2.85 272969 79 7533 267676 2.74 275209 80 7799 259973 2.91 267772 81 7778 260142 2.90 267920 82 7599 255661 2.89 263260 83 7219 254219 2.76 261438 84 7457 253557 2.86 261014 85 7006 246847 2.76 253853 86 6798 245416 2.70 252214 87 6977 241443 2.81 248420 88 6651 235855 2.74 242506 89 6663 233833 2.77 240496 90 6899 234411 2.86 241310 91 6566 231966 2.75 238532 92 6308 230213 2.67 236521 93 6395 226201 2.75 232596 94 6074 222852 2.65 228926 95 6157 219332 2.73 225489 96 6097 218021 2.72 224118 97 5786 216795 2.60 222581 98 5369 206572 2.53 211941 99 3981 0 100.00 3981