Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-230_S37_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-230_S37_L004_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 29439432
Paired-end alignments with a unique best hit 14996487
Pairs without alignments under any condition 9760279
Pairs that did not map uniquely 4682666
Genomic sequence context not extractable (edges of chromosomes) 81423

Cytosine Methylation

Total C's analysed 451302116
Methylated C's in CpG context 14969589
Methylated C's in CHG context 2096125
Methylated C's in CHH context 8124454
Methylated C's in Unknown context 296641
Unmethylated C's in CpG context 53045002
Unmethylated C's in CHG context 97207392
Unmethylated C's in CHH context 275859554
Unmethylated C's in Unknown context 2267283
Percentage methylation (CpG context) 22.0%
Percentage methylation (CHG context) 2.1%
Percentage methylation (CHH context) 2.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 7411462 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 7503602 original bottom strand