EPI-229_S36_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 7960758 lines in total Total number of methylation call strings processed: 15921516 Final Cytosine Methylation Report ================================= Total number of C's analysed: 171078466 Total methylated C's in CpG context: 6324525 Total methylated C's in CHG context: 977619 Total methylated C's in CHH context: 5216805 Total C to T conversions in CpG context: 17780401 Total C to T conversions in CHG context: 35948078 Total C to T conversions in CHH context: 104831038 C methylated in CpG context: 26.2% C methylated in CHG context: 2.6% C methylated in CHH context: 4.7%