CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 117130 188920 38.27 306050 2 112371 211877 34.66 324248 3 107794 190548 36.13 298342 4 114337 160261 41.64 274598 5 111174 140798 44.12 251972 6 113790 117958 49.10 231748 7 126632 117406 51.89 244038 8 59338 133901 30.71 193239 9 53237 125552 29.78 178789 10 52455 122911 29.91 175366 11 54243 125887 30.11 180130 12 53508 127365 29.58 180873 13 52690 128383 29.10 181073 14 50081 129679 27.86 179760 15 49331 131497 27.28 180828 16 45626 130535 25.90 176161 17 44312 127057 25.86 171369 18 45433 130610 25.81 176043 19 44320 130783 25.31 175103 20 44796 132128 25.32 176924 21 44641 134557 24.91 179198 22 44112 132082 25.04 176194 23 43742 130904 25.05 174646 24 43429 132264 24.72 175693 25 42640 131007 24.56 173647 26 43381 129504 25.09 172885 27 43035 133122 24.43 176157 28 44131 132693 24.96 176824 29 42967 133779 24.31 176746 30 42033 133387 23.96 175420 31 42997 131063 24.70 174060 32 42430 128966 24.76 171396 33 42463 130927 24.49 173390 34 43299 130461 24.92 173760 35 42286 130127 24.53 172413 36 42273 132972 24.12 175245 37 40671 129502 23.90 170173 38 40543 129377 23.86 169920 39 42614 131278 24.51 173892 40 41665 129145 24.39 170810 41 41102 128647 24.21 169749 42 42204 131765 24.26 173969 43 41242 130144 24.06 171386 44 40521 129287 23.86 169808 45 41852 128686 24.54 170538 46 41803 130184 24.31 171987 47 41092 128517 24.23 169609 48 41127 129677 24.08 170804 49 42591 128553 24.89 171144 50 40886 129122 24.05 170008 51 40971 129043 24.10 170014 52 41787 131552 24.11 173339 53 39909 126337 24.01 166246 54 39923 127090 23.90 167013 55 39966 123662 24.42 163628 56 39808 123646 24.35 163454 57 40742 125533 24.50 166275 58 41441 125111 24.88 166552 59 41900 123957 25.26 165857 60 41367 124989 24.87 166356 61 41698 122901 25.33 164599 62 40744 123555 24.80 164299 63 40014 123120 24.53 163134 64 39454 121744 24.48 161198 65 39857 120085 24.92 159942 66 40452 121578 24.97 162030 67 39760 117353 25.31 157113 68 38651 117521 24.75 156172 69 38219 115853 24.81 154072 70 38036 115740 24.73 153776 71 36701 113402 24.45 150103 72 36874 113728 24.48 150602 73 36560 110779 24.81 147339 74 36089 110890 24.55 146979 75 35462 111236 24.17 146698 76 35189 110317 24.18 145506 77 35591 108311 24.73 143902 78 35099 108950 24.37 144049 79 34742 106616 24.58 141358 80 33667 106466 24.03 140133 81 33504 105540 24.10 139044 82 32712 103433 24.03 136145 83 32949 104325 24.00 137274 84 33040 104854 23.96 137894 85 32547 101567 24.27 134114 86 31548 101300 23.75 132848 87 31008 100108 23.65 131116 88 30957 99432 23.74 130389 89 30639 97545 23.90 128184 90 30706 98000 23.86 128706 91 29679 95497 23.71 125176 92 29245 95073 23.52 124318 93 29410 95174 23.61 124584 94 29385 93467 23.92 122852 95 28691 93222 23.53 121913 96 28679 93241 23.52 121920 97 27976 89528 23.81 117504 98 25980 84536 23.51 110516 99 20535 67541 23.32 88076 100 26878 84395 24.16 111273 101 25479 84710 23.12 110189 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 170153 248885 40.61 419038 2 96762 239676 28.76 336438 3 42059 233019 15.29 275078 4 23765 235552 9.16 259317 5 15944 214872 6.91 230816 6 15630 201580 7.20 217210 7 9877 255199 3.73 265076 8 4989 277937 1.76 282926 9 3966 266172 1.47 270138 10 3948 254461 1.53 258409 11 4456 257633 1.70 262089 12 4120 258823 1.57 262943 13 3887 249961 1.53 253848 14 3912 252991 1.52 256903 15 3972 259722 1.51 263694 16 3402 259330 1.29 262732 17 4292 256433 1.65 260725 18 3311 255941 1.28 259252 19 3111 256883 1.20 259994 20 3252 272390 1.18 275642 21 3401 272859 1.23 276260 22 3680 267016 1.36 270696 23 3579 273472 1.29 277051 24 3333 275936 1.19 279269 25 3424 266490 1.27 269914 26 4767 269873 1.74 274640 27 3289 273896 1.19 277185 28 3335 273919 1.20 277254 29 4237 276691 1.51 280928 30 3034 277396 1.08 280430 31 3128 270060 1.14 273188 32 3122 274275 1.13 277397 33 3368 274475 1.21 277843 34 3316 270554 1.21 273870 35 4095 272724 1.48 276819 36 3333 272918 1.21 276251 37 3246 264616 1.21 267862 38 4014 270145 1.46 274159 39 3294 268745 1.21 272039 40 3190 268455 1.17 271645 41 3181 268669 1.17 271850 42 3119 270711 1.14 273830 43 3117 263915 1.17 267032 44 3003 268379 1.11 271382 45 3168 267282 1.17 270450 46 3211 264994 1.20 268205 47 3521 266437 1.30 269958 48 3061 272580 1.11 275641 49 3343 264519 1.25 267862 50 3598 264295 1.34 267893 51 3272 267709 1.21 270981 52 3292 265946 1.22 269238 53 3386 263325 1.27 266711 54 3499 267905 1.29 271404 55 3489 264654 1.30 268143 56 3692 266104 1.37 269796 57 3636 266086 1.35 269722 58 3744 262440 1.41 266184 59 3948 264509 1.47 268457 60 3692 265458 1.37 269150 61 3766 260067 1.43 263833 62 3985 260743 1.51 264728 63 4098 257808 1.56 261906 64 4049 255653 1.56 259702 65 5092 255029 1.96 260121 66 3939 250391 1.55 254330 67 3996 245105 1.60 249101 68 4557 245860 1.82 250417 69 3671 245411 1.47 249082 70 3596 239062 1.48 242658 71 3667 239096 1.51 242763 72 3689 237829 1.53 241518 73 3651 235010 1.53 238661 74 4091 233864 1.72 237955 75 3605 234214 1.52 237819 76 3432 226128 1.50 229560 77 4119 227351 1.78 231470 78 3540 224922 1.55 228462 79 3481 219005 1.56 222486 80 3540 218471 1.59 222011 81 3403 216825 1.55 220228 82 3398 211332 1.58 214730 83 3572 216096 1.63 219668 84 3448 214124 1.58 217572 85 3519 210949 1.64 214468 86 3711 210648 1.73 214359 87 3478 211536 1.62 215014 88 3471 204889 1.67 208360 89 3579 203272 1.73 206851 90 3353 203801 1.62 207154 91 3462 199665 1.70 203127 92 3606 200494 1.77 204100 93 3704 197800 1.84 201504 94 3461 193897 1.75 197358 95 3701 192793 1.88 196494 96 3625 191996 1.85 195621 97 3660 174050 2.06 177710 98 3519 160943 2.14 164462 99 2007 104322 1.89 106329 100 2612 104898 2.43 107510 101 4901 174884 2.73 179785 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 212109 329803 39.14 541912 2 129300 361150 26.36 490450 3 77963 407583 16.06 485546 4 72236 426995 14.47 499231 5 69941 501084 12.25 571025 6 58827 544542 9.75 603369 7 43139 697000 5.83 740139 8 38480 759111 4.82 797591 9 28887 699995 3.96 728882 10 29562 677437 4.18 706999 11 38810 680831 5.39 719641 12 32692 691176 4.52 723868 13 36620 706783 4.93 743403 14 40800 724053 5.33 764853 15 34295 743027 4.41 777322 16 33865 750131 4.32 783996 17 40125 756832 5.03 796957 18 32421 786000 3.96 818421 19 32623 800221 3.92 832844 20 38964 824693 4.51 863657 21 33616 822805 3.93 856421 22 36353 823741 4.23 860094 23 39684 824185 4.59 863869 24 33927 821598 3.97 855525 25 36660 825189 4.25 861849 26 40620 832476 4.65 873096 27 33883 838992 3.88 872875 28 33581 843325 3.83 876906 29 40250 841105 4.57 881355 30 33466 831616 3.87 865082 31 34084 822394 3.98 856478 32 37444 825619 4.34 863063 33 33414 826239 3.89 859653 34 38669 830781 4.45 869450 35 40273 824316 4.66 864589 36 33656 832776 3.88 866432 37 33111 826086 3.85 859197 38 40116 831634 4.60 871750 39 33389 827421 3.88 860810 40 33721 823659 3.93 857380 41 39640 826256 4.58 865896 42 34679 829583 4.01 864262 43 37242 821812 4.34 859054 44 38591 828540 4.45 867131 45 35294 817347 4.14 852641 46 34475 821408 4.03 855883 47 37616 821045 4.38 858661 48 31917 820689 3.74 852606 49 32903 811626 3.90 844529 50 37435 809943 4.42 847378 51 31955 800452 3.84 832407 52 34567 797863 4.15 832430 53 37198 793829 4.48 831027 54 32292 794331 3.91 826623 55 33319 788513 4.05 821832 56 37564 786474 4.56 824038 57 31368 791981 3.81 823349 58 32468 787198 3.96 819666 59 37527 787637 4.55 825164 60 31370 778931 3.87 810301 61 33873 771905 4.20 805778 62 36286 763242 4.54 799528 63 31133 755587 3.96 786720 64 33587 748849 4.29 782436 65 34929 742178 4.49 777107 66 30610 735059 4.00 765669 67 30470 729495 4.01 759965 68 34108 725939 4.49 760047 69 29907 722188 3.98 752095 70 29929 715598 4.01 745527 71 33658 712517 4.51 746175 72 29667 709249 4.01 738916 73 32527 697787 4.45 730314 74 33956 694791 4.66 728747 75 29265 687612 4.08 716877 76 29073 683238 4.08 712311 77 33910 675661 4.78 709571 78 27384 671840 3.92 699224 79 28716 664723 4.14 693439 80 32404 660798 4.67 693202 81 28633 650782 4.21 679415 82 30259 643724 4.49 673983 83 32664 643250 4.83 675914 84 28656 636261 4.31 664917 85 27666 626234 4.23 653900 86 30655 619742 4.71 650397 87 26042 614135 4.07 640177 88 25931 608397 4.09 634328 89 30668 602148 4.85 632816 90 26161 599311 4.18 625472 91 27173 591242 4.39 618415 92 29124 587427 4.72 616551 93 25700 584365 4.21 610065 94 25894 577172 4.29 603066 95 29178 568422 4.88 597600 96 24355 557440 4.19 581795 97 24290 544885 4.27 569175 98 26747 506050 5.02 532797 99 14684 353641 3.99 368325 100 16841 312991 5.11 329832 101 26041 513049 4.83 539090 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 98509 119800 45.12 218309 2 86718 105455 45.12 192173 3 91141 117132 43.76 208273 4 84256 132311 38.91 216567 5 36029 169526 17.53 205555 6 22144 92315 19.35 114459 7 19483 99089 16.43 118572 8 20521 93182 18.05 113703 9 17891 79625 18.35 97516 10 19796 88647 18.25 108443 11 21011 87037 19.45 108048 12 19967 84742 19.07 104709 13 20676 81331 20.27 102007 14 21446 83904 20.36 105350 15 21251 75949 21.86 97200 16 19674 73891 21.03 93565 17 23780 79820 22.95 103600 18 22984 75516 23.33 98500 19 22055 74334 22.88 96389 20 20633 73115 22.01 93748 21 21378 70586 23.25 91964 22 21372 73903 22.43 95275 23 20191 69921 22.41 90112 24 19114 67942 21.96 87056 25 20923 69894 23.04 90817 26 19573 67508 22.48 87081 27 21018 67593 23.72 88611 28 19130 63970 23.02 83100 29 20103 67377 22.98 87480 30 19025 63283 23.11 82308 31 18098 65468 21.66 83566 32 17588 61759 22.17 79347 33 20229 61645 24.71 81874 34 19213 64517 22.95 83730 35 23290 67790 25.57 91080 36 19287 61083 24.00 80370 37 19903 62835 24.06 82738 38 17991 60368 22.96 78359 39 18436 59050 23.79 77486 40 19837 59305 25.07 79142 41 17653 57586 23.46 75239 42 17774 59109 23.12 76883 43 17812 57880 23.53 75692 44 16539 55771 22.87 72310 45 19788 60277 24.71 80065 46 16128 52503 23.50 68631 47 16474 53773 23.45 70247 48 16589 53734 23.59 70323 49 16071 55373 22.49 71444 50 15079 50270 23.07 65349 51 15175 49572 23.44 64747 52 15376 50812 23.23 66188 53 15676 49327 24.12 65003 54 14895 49325 23.19 64220 55 15106 46868 24.37 61974 56 13726 46656 22.73 60382 57 14378 46993 23.43 61371 58 13806 47045 22.69 60851 59 13339 42887 23.72 56226 60 13832 43239 24.24 57071 61 12089 43016 21.94 55105 62 12509 40443 23.62 52952 63 13091 40664 24.35 53755 64 12426 41065 23.23 53491 65 12182 38400 24.08 50582 66 12865 40436 24.14 53301 67 11786 40934 22.36 52720 68 12945 41301 23.86 54246 69 11682 39698 22.74 51380 70 11227 38260 22.69 49487 71 11423 35952 24.11 47375 72 10923 35190 23.69 46113 73 10909 35412 23.55 46321 74 10320 35106 22.72 45426 75 10537 35451 22.91 45988 76 10544 33772 23.79 44316 77 10176 33721 23.18 43897 78 10273 33850 23.28 44123 79 9768 32331 23.20 42099 80 9781 32085 23.36 41866 81 9534 32496 22.68 42030 82 9777 32079 23.36 41856 83 9704 29856 24.53 39560 84 10440 33246 23.90 43686 85 9259 31232 22.87 40491 86 9047 30354 22.96 39401 87 9226 30061 23.48 39287 88 9056 29609 23.42 38665 89 9651 29844 24.44 39495 90 9514 29864 24.16 39378 91 8736 28690 23.34 37426 92 8420 28689 22.69 37109 93 8498 28588 22.91 37086 94 9093 28332 24.30 37425 95 8688 27514 24.00 36202 96 8272 27307 23.25 35579 97 9119 28733 24.09 37852 98 8263 25994 24.12 34257 99 7302 0 100.00 7302 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 30263 147450 17.03 177713 2 31189 151379 17.08 182568 3 29192 154767 15.87 183959 4 31655 165744 16.04 197399 5 4053 301722 1.33 305775 6 2992 365415 0.81 368407 7 1950 205524 0.94 207474 8 1798 222876 0.80 224674 9 1781 183631 0.96 185412 10 1802 176101 1.01 177903 11 2520 234961 1.06 237481 12 1890 185731 1.01 187621 13 1920 185651 1.02 187571 14 1993 178908 1.10 180901 15 1916 175297 1.08 177213 16 1723 163071 1.05 164794 17 2055 173363 1.17 175418 18 2418 152845 1.56 155263 19 1843 152695 1.19 154538 20 1931 152046 1.25 153977 21 2520 143002 1.73 145522 22 2033 158386 1.27 160419 23 1990 156878 1.25 158868 24 1742 140183 1.23 141925 25 1786 142304 1.24 144090 26 2084 151071 1.36 153155 27 1891 139524 1.34 141415 28 1839 134662 1.35 136501 29 1962 145751 1.33 147713 30 1994 136111 1.44 138105 31 1753 132385 1.31 134138 32 1763 134741 1.29 136504 33 1940 155896 1.23 157836 34 1753 131131 1.32 132884 35 1878 135474 1.37 137352 36 1827 133234 1.35 135061 37 1766 124308 1.40 126074 38 2064 132617 1.53 134681 39 1942 125139 1.53 127081 40 1806 121257 1.47 123063 41 1950 117290 1.64 119240 42 1942 110230 1.73 112172 43 2176 115249 1.85 117425 44 1800 114042 1.55 115842 45 1828 103264 1.74 105092 46 1800 104847 1.69 106647 47 1976 107596 1.80 109572 48 1756 101804 1.70 103560 49 1927 106535 1.78 108462 50 1944 104151 1.83 106095 51 1796 96377 1.83 98173 52 1895 95515 1.95 97410 53 2041 104478 1.92 106519 54 1769 95119 1.83 96888 55 1739 96598 1.77 98337 56 1670 94410 1.74 96080 57 2091 90961 2.25 93052 58 1557 91555 1.67 93112 59 1372 91753 1.47 93125 60 1377 86175 1.57 87552 61 1089 86046 1.25 87135 62 1050 90962 1.14 92012 63 1030 90521 1.13 91551 64 930 80738 1.14 81668 65 1020 87666 1.15 88686 66 905 78700 1.14 79605 67 960 85965 1.10 86925 68 873 84513 1.02 85386 69 948 80347 1.17 81295 70 890 80324 1.10 81214 71 922 82385 1.11 83307 72 881 75648 1.15 76529 73 750 75905 0.98 76655 74 779 78087 0.99 78866 75 789 73453 1.06 74242 76 788 72113 1.08 72901 77 838 77057 1.08 77895 78 822 72497 1.12 73319 79 768 72457 1.05 73225 80 750 69490 1.07 70240 81 805 67324 1.18 68129 82 774 65976 1.16 66750 83 751 68473 1.08 69224 84 716 64511 1.10 65227 85 812 71826 1.12 72638 86 821 65636 1.24 66457 87 763 65281 1.16 66044 88 743 61983 1.18 62726 89 840 66410 1.25 67250 90 822 64789 1.25 65611 91 776 65754 1.17 66530 92 757 63695 1.17 64452 93 737 60232 1.21 60969 94 712 59056 1.19 59768 95 801 60729 1.30 61530 96 892 57913 1.52 58805 97 746 57831 1.27 58577 98 610 56480 1.07 57090 99 617 0 100.00 617 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 59618 200010 22.96 259628 2 52715 165028 24.21 217743 3 54418 166960 24.58 221378 4 55637 161300 25.65 216937 5 20688 321208 6.05 341896 6 20352 448038 4.35 468390 7 20835 598891 3.36 619726 8 19057 591680 3.12 610737 9 22537 555591 3.90 578128 10 20272 564823 3.46 585095 11 20008 557676 3.46 577684 12 18784 522121 3.47 540905 13 18206 538114 3.27 556320 14 18901 540053 3.38 558954 15 18149 554547 3.17 572696 16 16522 529354 3.03 545876 17 18122 530877 3.30 548999 18 17343 530094 3.17 547437 19 15914 493096 3.13 509010 20 18598 517380 3.47 535978 21 17586 483695 3.51 501281 22 18143 471613 3.70 489756 23 17785 461661 3.71 479446 24 16310 441638 3.56 457948 25 17839 441024 3.89 458863 26 17274 437524 3.80 454798 27 17449 463274 3.63 480723 28 16775 447876 3.61 464651 29 16811 441096 3.67 457907 30 17837 421995 4.06 439832 31 16922 410160 3.96 427082 32 16457 399697 3.95 416154 33 17625 392667 4.30 410292 34 16314 393352 3.98 409666 35 17152 404794 4.06 421946 36 15701 404020 3.74 419721 37 15706 393086 3.84 408792 38 16681 407379 3.93 424060 39 16684 379056 4.22 395740 40 15735 391426 3.86 407161 41 16125 372279 4.15 388404 42 15905 377087 4.05 392992 43 15998 357059 4.29 373057 44 14815 356400 3.99 371215 45 15243 355356 4.11 370599 46 14790 357037 3.98 371827 47 14186 350018 3.90 364204 48 14661 338869 4.15 353530 49 14032 341197 3.95 355229 50 14118 336066 4.03 350184 51 14170 327529 4.15 341699 52 13129 309048 4.08 322177 53 13204 311162 4.07 324366 54 12404 303078 3.93 315482 55 12306 310931 3.81 323237 56 12351 302609 3.92 314960 57 11825 307041 3.71 318866 58 11107 298137 3.59 309244 59 11821 286890 3.96 298711 60 10950 292762 3.61 303712 61 11596 278206 4.00 289802 62 10813 274426 3.79 285239 63 10252 277176 3.57 287428 64 10626 267907 3.81 278533 65 10415 271798 3.69 282213 66 10034 264179 3.66 274213 67 9772 262717 3.59 272489 68 9859 271004 3.51 280863 69 10041 264255 3.66 274296 70 9699 255971 3.65 265670 71 9470 250919 3.64 260389 72 9999 249272 3.86 259271 73 9710 244848 3.81 254558 74 9214 245373 3.62 254587 75 9254 245139 3.64 254393 76 8584 236694 3.50 245278 77 9851 235873 4.01 245724 78 9185 236588 3.74 245773 79 8991 240451 3.60 249442 80 9410 231903 3.90 241313 81 9236 230930 3.85 240166 82 9089 227812 3.84 236901 83 8577 227664 3.63 236241 84 8846 227833 3.74 236679 85 8272 221368 3.60 229640 86 8228 220239 3.60 228467 87 8299 217422 3.68 225721 88 8011 211688 3.65 219699 89 8236 209418 3.78 217654 90 8078 211326 3.68 219404 91 7794 207385 3.62 215179 92 7665 206477 3.58 214142 93 7423 203047 3.53 210470 94 7029 200198 3.39 207227 95 7563 196096 3.71 203659 96 7149 194363 3.55 201512 97 6909 193868 3.44 200777 98 6564 185990 3.41 192554 99 4710 0 100.00 4710