Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-229_S36_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-229_S36_L004_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 19891722
Paired-end alignments with a unique best hit 11146521
Pairs without alignments under any condition 5248262
Pairs that did not map uniquely 3496939
Genomic sequence context not extractable (edges of chromosomes) 58499

Cytosine Methylation

Total C's analysed 345087692
Methylated C's in CpG context 11072995
Methylated C's in CHG context 1782320
Methylated C's in CHH context 8362131
Methylated C's in Unknown context 284220
Unmethylated C's in CpG context 42429976
Unmethylated C's in CHG context 74687262
Unmethylated C's in CHH context 206753008
Unmethylated C's in Unknown context 1752928
Percentage methylation (CpG context) 20.7%
Percentage methylation (CHG context) 2.3%
Percentage methylation (CHH context) 3.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 5469217 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 5618805 original bottom strand