EPI-227_S35_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5499214 lines in total Total number of methylation call strings processed: 10998428 Final Cytosine Methylation Report ================================= Total number of C's analysed: 122410899 Total methylated C's in CpG context: 4581698 Total methylated C's in CHG context: 783227 Total methylated C's in CHH context: 5602427 Total C to T conversions in CpG context: 11957770 Total C to T conversions in CHG context: 24873164 Total C to T conversions in CHH context: 74612613 C methylated in CpG context: 27.7% C methylated in CHG context: 3.1% C methylated in CHH context: 7.0%