CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 81942 127390 39.14 209332 2 78020 139664 35.84 217684 3 75817 124929 37.77 200746 4 80406 104550 43.47 184956 5 77657 91447 45.92 169104 6 78537 77707 50.27 156244 7 87681 79151 52.56 166832 8 42515 88579 32.43 131094 9 37305 81872 31.30 119177 10 37755 79857 32.10 117612 11 39967 82426 32.65 122393 12 39044 83371 31.89 122415 13 38117 86105 30.68 124222 14 36511 86620 29.65 123131 15 36286 87271 29.37 123557 16 33435 86193 27.95 119628 17 31826 83774 27.53 115600 18 33040 86663 27.60 119703 19 32124 86469 27.09 118593 20 32145 87582 26.85 119727 21 32061 88703 26.55 120764 22 31347 87871 26.29 119218 23 31967 86682 26.94 118649 24 30534 87192 25.94 117726 25 30408 86784 25.95 117192 26 30948 86507 26.35 117455 27 30724 88127 25.85 118851 28 31684 87638 26.55 119322 29 30495 88722 25.58 119217 30 30245 87828 25.62 118073 31 30909 86196 26.39 117105 32 30308 85439 26.18 115747 33 30329 86456 25.97 116785 34 31185 85838 26.65 117023 35 30676 86797 26.11 117473 36 30521 88233 25.70 118754 37 29379 85292 25.62 114671 38 29296 85561 25.51 114857 39 29973 86714 25.69 116687 40 29813 84651 26.05 114464 41 29407 85142 25.67 114549 42 29887 87110 25.55 116997 43 29605 86075 25.59 115680 44 29163 85161 25.51 114324 45 29905 85344 25.95 115249 46 29949 85746 25.89 115695 47 29621 84890 25.87 114511 48 29227 85181 25.55 114408 49 30181 85080 26.18 115261 50 29476 85595 25.62 115071 51 29270 85055 25.60 114325 52 29909 87467 25.48 117376 53 29167 83832 25.81 112999 54 28655 83980 25.44 112635 55 28690 82058 25.91 110748 56 28668 81784 25.96 110452 57 28881 83072 25.80 111953 58 29860 83417 26.36 113277 59 30154 82537 26.76 112691 60 29499 82352 26.37 111851 61 29607 81388 26.67 110995 62 29149 82630 26.08 111779 63 28466 81303 25.93 109769 64 28518 80736 26.10 109254 65 28362 79340 26.33 107702 66 29038 80363 26.54 109401 67 28589 78060 26.81 106649 68 28057 77785 26.51 105842 69 27328 76778 26.25 104106 70 26936 77119 25.89 104055 71 26636 75369 26.11 102005 72 26305 75067 25.95 101372 73 26542 74387 26.30 100929 74 25815 73859 25.90 99674 75 25192 73566 25.51 98758 76 25139 73187 25.57 98326 77 25403 72017 26.08 97420 78 25330 72776 25.82 98106 79 24706 71468 25.69 96174 80 24149 70795 25.43 94944 81 24046 69935 25.59 93981 82 23281 69508 25.09 92789 83 23734 69848 25.36 93582 84 23721 69436 25.46 93157 85 23618 68045 25.77 91663 86 22812 67658 25.21 90470 87 22244 66897 24.95 89141 88 22310 67263 24.91 89573 89 22071 65642 25.16 87713 90 22041 65785 25.10 87826 91 21524 64679 24.97 86203 92 21078 63957 24.79 85035 93 21059 64034 24.75 85093 94 21110 63282 25.01 84392 95 20825 62816 24.90 83641 96 20665 62762 24.77 83427 97 19701 60076 24.70 79777 98 19074 57410 24.94 76484 99 14871 45512 24.63 60383 100 19566 56911 25.58 76477 101 18884 57666 24.67 76550 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 113426 175092 39.31 288518 2 66528 167373 28.44 233901 3 29901 160701 15.69 190602 4 17601 160987 9.86 178588 5 12082 146528 7.62 158610 6 12113 141072 7.91 153185 7 7899 176580 4.28 184479 8 4644 189733 2.39 194377 9 3598 180156 1.96 183754 10 3527 175309 1.97 178836 11 4179 176919 2.31 181098 12 3852 177337 2.13 181189 13 3594 171391 2.05 174985 14 3526 173022 2.00 176548 15 3545 177101 1.96 180646 16 3140 176255 1.75 179395 17 4088 173896 2.30 177984 18 3177 173970 1.79 177147 19 2874 174930 1.62 177804 20 3245 183904 1.73 187149 21 3081 185061 1.64 188142 22 3156 182957 1.70 186113 23 3287 184987 1.75 188274 24 3038 186768 1.60 189806 25 3111 180892 1.69 184003 26 4627 183839 2.46 188466 27 3044 185884 1.61 188928 28 2972 185542 1.58 188514 29 4065 187627 2.12 191692 30 2795 187053 1.47 189848 31 2877 183843 1.54 186720 32 2826 185438 1.50 188264 33 2957 186368 1.56 189325 34 3243 183265 1.74 186508 35 4064 184691 2.15 188755 36 3081 185528 1.63 188609 37 3016 178896 1.66 181912 38 3927 183350 2.10 187277 39 2976 182175 1.61 185151 40 2865 182652 1.54 185517 41 2910 182722 1.57 185632 42 2829 183077 1.52 185906 43 2824 180140 1.54 182964 44 2800 182959 1.51 185759 45 2794 181987 1.51 184781 46 2940 179656 1.61 182596 47 3249 181081 1.76 184330 48 2802 184603 1.50 187405 49 2998 180022 1.64 183020 50 3212 179868 1.75 183080 51 2852 182238 1.54 185090 52 2925 181358 1.59 184283 53 3000 179215 1.65 182215 54 3311 182521 1.78 185832 55 3058 179179 1.68 182237 56 3250 180936 1.76 184186 57 3252 180523 1.77 183775 58 3089 178800 1.70 181889 59 3398 179184 1.86 182582 60 3199 180343 1.74 183542 61 3427 176939 1.90 180366 62 3669 177310 2.03 180979 63 3584 175342 2.00 178926 64 3608 174322 2.03 177930 65 4668 173917 2.61 178585 66 3448 171361 1.97 174809 67 3559 167363 2.08 170922 68 4101 167678 2.39 171779 69 3172 167649 1.86 170821 70 3030 163825 1.82 166855 71 3210 163087 1.93 166297 72 3156 163290 1.90 166446 73 3208 161143 1.95 164351 74 3782 160145 2.31 163927 75 3009 160352 1.84 163361 76 3102 155881 1.95 158983 77 3885 155695 2.43 159580 78 2942 153041 1.89 155983 79 3104 149993 2.03 153097 80 2986 149726 1.96 152712 81 2860 148324 1.89 151184 82 2864 145308 1.93 148172 83 2985 147676 1.98 150661 84 2867 147702 1.90 150569 85 2987 144480 2.03 147467 86 3118 144302 2.12 147420 87 2821 144829 1.91 147650 88 2853 141761 1.97 144614 89 3105 140915 2.16 144020 90 2859 140164 2.00 143023 91 2958 138096 2.10 141054 92 3026 138006 2.15 141032 93 3138 136630 2.25 139768 94 2975 134545 2.16 137520 95 3257 133113 2.39 136370 96 3040 131310 2.26 134350 97 3043 121061 2.45 124104 98 2956 111722 2.58 114678 99 1556 72217 2.11 73773 100 2207 73327 2.92 75534 101 4195 121265 3.34 125460 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 163097 240785 40.38 403882 2 109632 257706 29.84 367338 3 73030 287510 20.26 360540 4 70901 304965 18.86 375866 5 68575 359344 16.03 427919 6 59589 393182 13.16 452771 7 42668 491072 7.99 533740 8 40773 530341 7.14 571114 9 31666 488820 6.08 520486 10 31520 474653 6.23 506173 11 41684 476943 8.04 518627 12 35155 481211 6.81 516366 13 39447 491715 7.43 531162 14 44015 504059 8.03 548074 15 37133 516464 6.71 553597 16 36595 523412 6.53 560007 17 43264 527183 7.58 570447 18 35495 547877 6.08 583372 19 35138 556374 5.94 591512 20 42535 575909 6.88 618444 21 36847 575683 6.02 612530 22 40255 576530 6.53 616785 23 43339 575887 7.00 619226 24 37075 576162 6.05 613237 25 40112 579183 6.48 619295 26 43706 585089 6.95 628795 27 37327 585803 5.99 623130 28 36869 589092 5.89 625961 29 43080 587588 6.83 630668 30 37003 582471 5.97 619474 31 37784 575210 6.16 612994 32 40537 577109 6.56 617646 33 37338 578093 6.07 615431 34 42707 582828 6.83 625535 35 43460 577715 7.00 621175 36 37311 583677 6.01 620988 37 36361 580709 5.89 617070 38 44043 581657 7.04 625700 39 36574 578722 5.94 615296 40 37053 577116 6.03 614169 41 43595 578481 7.01 622076 42 38640 581999 6.23 620639 43 41171 575241 6.68 616412 44 42394 579850 6.81 622244 45 39072 575490 6.36 614562 46 37569 576749 6.12 614318 47 41205 576789 6.67 617994 48 34922 575203 5.72 610125 49 35772 567420 5.93 603192 50 40781 566409 6.72 607190 51 35305 561290 5.92 596595 52 38788 559066 6.49 597854 53 41677 555967 6.97 597644 54 36088 556148 6.09 592236 55 36872 551559 6.27 588431 56 41603 552007 7.01 593610 57 34824 555233 5.90 590057 58 35335 551980 6.02 587315 59 41147 552876 6.93 594023 60 34578 545760 5.96 580338 61 38135 541124 6.58 579259 62 39888 535760 6.93 575648 63 34882 529115 6.18 563997 64 37444 527021 6.63 564465 65 38636 522183 6.89 560819 66 34044 517169 6.18 551213 67 33311 514074 6.09 547385 68 37356 509394 6.83 546750 69 33176 507541 6.14 540717 70 33360 502522 6.23 535882 71 37123 502056 6.89 539179 72 33356 499256 6.26 532612 73 36997 491444 7.00 528441 74 37379 489887 7.09 527266 75 33213 483420 6.43 516633 76 32835 481216 6.39 514051 77 37793 476590 7.35 514383 78 31272 473450 6.20 504722 79 31980 468967 6.38 500947 80 36418 467556 7.23 503974 81 32795 459934 6.66 492729 82 34657 454772 7.08 489429 83 36380 454733 7.41 491113 84 32952 449582 6.83 482534 85 31116 443542 6.56 474658 86 34368 438363 7.27 472731 87 29763 435670 6.39 465433 88 29221 432279 6.33 461500 89 34062 426564 7.39 460626 90 29558 424767 6.51 454325 91 30819 419834 6.84 450653 92 32904 418423 7.29 451327 93 29569 415234 6.65 444803 94 29321 410626 6.66 439947 95 32588 404709 7.45 437297 96 27453 397765 6.46 425218 97 27107 388111 6.53 415218 98 29779 362681 7.59 392460 99 16824 252126 6.26 268950 100 18661 224188 7.68 242849 101 28696 367743 7.24 396439 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 73657 84739 46.50 158396 2 63873 73309 46.56 137182 3 67055 80391 45.48 147446 4 62030 89953 40.81 151983 5 26852 116197 18.77 143049 6 16691 63750 20.75 80441 7 14400 67557 17.57 81957 8 15155 63826 19.19 78981 9 13161 54379 19.49 67540 10 14827 60393 19.71 75220 11 15598 59833 20.68 75431 12 14804 57662 20.43 72466 13 15566 55217 21.99 70783 14 15906 57467 21.68 73373 15 15243 51638 22.79 66881 16 14483 49391 22.67 63874 17 17818 54499 24.64 72317 18 17028 51885 24.71 68913 19 16097 51332 23.87 67429 20 15211 49921 23.35 65132 21 15937 48258 24.83 64195 22 15583 50122 23.72 65705 23 14632 47697 23.48 62329 24 14225 46442 23.45 60667 25 15435 48161 24.27 63596 26 14343 45903 23.81 60246 27 15898 46188 25.61 62086 28 14155 43184 24.69 57339 29 14926 46323 24.37 61249 30 14095 42466 24.92 56561 31 13738 44410 23.63 58148 32 13218 41804 24.02 55022 33 14886 42150 26.10 57036 34 14289 44391 24.35 58680 35 17411 47431 26.85 64842 36 14701 42239 25.82 56940 37 14601 43133 25.29 57734 38 13249 41180 24.34 54429 39 13635 40641 25.12 54276 40 14554 40580 26.40 55134 41 13075 39819 24.72 52894 42 13339 41025 24.54 54364 43 13131 40324 24.56 53455 44 12341 38331 24.35 50672 45 15178 42452 26.34 57630 46 11977 36570 24.67 48547 47 12243 37263 24.73 49506 48 12404 36655 25.28 49059 49 11826 38126 23.67 49952 50 11327 34587 24.67 45914 51 11402 33768 25.24 45170 52 11441 35086 24.59 46527 53 11664 34569 25.23 46233 54 11335 34733 24.60 46068 55 11226 32541 25.65 43767 56 10492 32525 24.39 43017 57 10826 32727 24.86 43553 58 10475 32362 24.45 42837 59 10235 30019 25.43 40254 60 10342 30597 25.26 40939 61 9154 29797 23.50 38951 62 9442 28275 25.03 37717 63 10027 28613 25.95 38640 64 9437 28674 24.76 38111 65 9117 27218 25.09 36335 66 9884 28462 25.78 38346 67 9060 29010 23.80 38070 68 9831 29885 24.75 39716 69 8808 27413 24.32 36221 70 8685 27059 24.30 35744 71 8972 25452 26.06 34424 72 8408 24910 25.24 33318 73 8484 25149 25.23 33633 74 7741 24688 23.87 32429 75 7800 25245 23.60 33045 76 7966 24241 24.73 32207 77 7843 24413 24.31 32256 78 7884 24070 24.67 31954 79 7610 22925 24.92 30535 80 7346 22696 24.45 30042 81 7394 23037 24.30 30431 82 7401 22724 24.57 30125 83 7477 21711 25.62 29188 84 8186 23642 25.72 31828 85 7211 21876 24.79 29087 86 7174 21763 24.79 28937 87 7075 21413 24.84 28488 88 6909 21265 24.52 28174 89 7329 21894 25.08 29223 90 7314 21211 25.64 28525 91 6826 20758 24.75 27584 92 6520 20496 24.13 27016 93 6688 20806 24.33 27494 94 6903 20419 25.27 27322 95 6909 19744 25.92 26653 96 6458 19736 24.65 26194 97 7302 21057 25.75 28359 98 6437 19058 25.25 25495 99 5833 0 100.00 5833 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 22515 103790 17.83 126305 2 22487 104142 17.76 126629 3 21247 107251 16.53 128498 4 22856 116825 16.36 139681 5 3489 210115 1.63 213604 6 2625 259111 1.00 261736 7 1751 145164 1.19 146915 8 1774 155355 1.13 157129 9 1763 128875 1.35 130638 10 1653 122644 1.33 124297 11 2717 166460 1.61 169177 12 1791 131167 1.35 132958 13 1752 130942 1.32 132694 14 1769 125096 1.39 126865 15 1757 120930 1.43 122687 16 1620 112726 1.42 114346 17 1801 121168 1.46 122969 18 2586 106982 2.36 109568 19 1725 106353 1.60 108078 20 1806 106129 1.67 107935 21 2711 100064 2.64 102775 22 1818 112058 1.60 113876 23 1789 108212 1.63 110001 24 1566 98012 1.57 99578 25 1695 99782 1.67 101477 26 1884 106146 1.74 108030 27 1683 97156 1.70 98839 28 1609 94499 1.67 96108 29 1682 102102 1.62 103784 30 1795 95787 1.84 97582 31 1535 93157 1.62 94692 32 1637 93746 1.72 95383 33 1783 112901 1.55 114684 34 1685 92218 1.79 93903 35 1681 94744 1.74 96425 36 1626 94901 1.68 96527 37 1545 87598 1.73 89143 38 1712 93457 1.80 95169 39 1701 88771 1.88 90472 40 1602 85997 1.83 87599 41 1647 82558 1.96 84205 42 1737 77889 2.18 79626 43 1775 82051 2.12 83826 44 1519 80208 1.86 81727 45 1477 73311 1.97 74788 46 1543 74011 2.04 75554 47 1652 76507 2.11 78159 48 1659 72452 2.24 74111 49 1552 76584 1.99 78136 50 1734 73835 2.29 75569 51 1620 68303 2.32 69923 52 1574 67795 2.27 69369 53 1757 75208 2.28 76965 54 1641 68301 2.35 69942 55 1500 69212 2.12 70712 56 1546 67534 2.24 69080 57 2031 65772 3.00 67803 58 1467 66328 2.16 67795 59 1273 65510 1.91 66783 60 1500 63215 2.32 64715 61 1089 62323 1.72 63412 62 1120 65208 1.69 66328 63 959 66631 1.42 67590 64 922 59437 1.53 60359 65 954 62952 1.49 63906 66 863 56931 1.49 57794 67 972 62578 1.53 63550 68 920 61483 1.47 62403 69 1007 58836 1.68 59843 70 872 59012 1.46 59884 71 829 60351 1.36 61180 72 882 55412 1.57 56294 73 809 55097 1.45 55906 74 761 56528 1.33 57289 75 768 54310 1.39 55078 76 790 52223 1.49 53013 77 834 56009 1.47 56843 78 876 54208 1.59 55084 79 768 52453 1.44 53221 80 730 50730 1.42 51460 81 775 49572 1.54 50347 82 730 48735 1.48 49465 83 745 50073 1.47 50818 84 735 47962 1.51 48697 85 756 53753 1.39 54509 86 766 47999 1.57 48765 87 788 48149 1.61 48937 88 750 45840 1.61 46590 89 831 48989 1.67 49820 90 809 48603 1.64 49412 91 792 49341 1.58 50133 92 718 46537 1.52 47255 93 773 44764 1.70 45537 94 720 44159 1.60 44879 95 788 45034 1.72 45822 96 1005 42790 2.29 43795 97 743 42780 1.71 43523 98 599 41959 1.41 42558 99 693 0 100.00 693 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 52862 139075 27.54 191937 2 48925 113217 30.17 162142 3 51599 115452 30.89 167051 4 53208 112797 32.05 166005 5 21941 230041 8.71 251982 6 22377 317220 6.59 339597 7 22960 424502 5.13 447462 8 20943 419969 4.75 440912 9 24293 392511 5.83 416804 10 22008 402155 5.19 424163 11 22199 396691 5.30 418890 12 20905 370375 5.34 391280 13 20280 385214 5.00 405494 14 20617 386147 5.07 406764 15 19688 398098 4.71 417786 16 18407 379269 4.63 397676 17 19973 381611 4.97 401584 18 19284 380344 4.83 399628 19 17465 353002 4.71 370467 20 20257 375335 5.12 395592 21 19303 348648 5.25 367951 22 20304 338926 5.65 359230 23 19721 332850 5.59 352571 24 17764 318402 5.28 336166 25 20509 318433 6.05 338942 26 18449 316337 5.51 334786 27 19135 338010 5.36 357145 28 18449 323584 5.39 342033 29 18438 320673 5.44 339111 30 20028 307104 6.12 327132 31 18660 298543 5.88 317203 32 17870 289623 5.81 307493 33 19828 285318 6.50 305146 34 18498 286015 6.07 304513 35 18414 293258 5.91 311672 36 17101 292552 5.52 309653 37 17070 286187 5.63 303257 38 18456 299267 5.81 317723 39 18837 276374 6.38 295211 40 17675 287711 5.79 305386 41 18614 270456 6.44 289070 42 18115 276632 6.15 294747 43 18102 260147 6.51 278249 44 16319 259397 5.92 275716 45 17058 258294 6.19 275352 46 16485 260117 5.96 276602 47 15501 254530 5.74 270031 48 16153 248128 6.11 264281 49 15373 251064 5.77 266437 50 15698 246981 5.98 262679 51 15756 240218 6.16 255974 52 14719 225893 6.12 240612 53 14498 228542 5.97 243040 54 13857 221772 5.88 235629 55 13732 229608 5.64 243340 56 13636 222994 5.76 236630 57 13379 228486 5.53 241865 58 12466 221471 5.33 233937 59 13290 212763 5.88 226053 60 12719 216350 5.55 229069 61 13455 205863 6.13 219318 62 12543 204708 5.77 217251 63 12006 206447 5.50 218453 64 12916 200213 6.06 213129 65 11481 203282 5.35 214763 66 11764 196652 5.64 208416 67 11442 196035 5.51 207477 68 11175 202676 5.23 213851 69 11945 198402 5.68 210347 70 11373 191154 5.62 202527 71 11051 186837 5.58 197888 72 11841 187117 5.95 198958 73 11277 183445 5.79 194722 74 10754 184132 5.52 194886 75 10767 183694 5.54 194461 76 10254 177236 5.47 187490 77 11329 176574 6.03 187903 78 10923 178335 5.77 189258 79 10709 181390 5.57 192099 80 11072 174802 5.96 185874 81 11133 175310 5.97 186443 82 10738 172656 5.86 183394 83 9752 171513 5.38 181265 84 10391 171876 5.70 182267 85 9713 166888 5.50 176601 86 9715 167001 5.50 176716 87 9824 164450 5.64 174274 88 9448 159983 5.58 169431 89 9495 157921 5.67 167416 90 9600 160172 5.65 169772 91 9141 158142 5.46 167283 92 8820 156035 5.35 164855 93 8696 153910 5.35 162606 94 8271 152641 5.14 160912 95 8619 149015 5.47 157634 96 8312 148691 5.29 157003 97 7991 148142 5.12 156133 98 7669 141833 5.13 149502 99 5630 0 100.00 5630