Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-227_S35_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-227_S35_L004_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 13531234
Paired-end alignments with a unique best hit 7734248
Pairs without alignments under any condition 3471625
Pairs that did not map uniquely 2325361
Genomic sequence context not extractable (edges of chromosomes) 29630

Cytosine Methylation

Total C's analysed 239457122
Methylated C's in CpG context 8334082
Methylated C's in CHG context 1391647
Methylated C's in CHH context 9119902
Methylated C's in Unknown context 277190
Unmethylated C's in CpG context 25290325
Unmethylated C's in CHG context 50181960
Unmethylated C's in CHH context 145139206
Unmethylated C's in Unknown context 1149172
Percentage methylation (CpG context) 24.8%
Percentage methylation (CHG context) 2.7%
Percentage methylation (CHH context) 5.9%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3835808 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 3868810 original bottom strand