EPI-226_S34_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 4713521 lines in total Total number of methylation call strings processed: 9427042 Final Cytosine Methylation Report ================================= Total number of C's analysed: 107029543 Total methylated C's in CpG context: 4183509 Total methylated C's in CHG context: 693539 Total methylated C's in CHH context: 4871254 Total C to T conversions in CpG context: 10323567 Total C to T conversions in CHG context: 21846524 Total C to T conversions in CHH context: 65111150 C methylated in CpG context: 28.8% C methylated in CHG context: 3.1% C methylated in CHH context: 7.0%