CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 75450 118317 38.94 193767 2 73101 130186 35.96 203287 3 69465 113347 38.00 182812 4 72380 89360 44.75 161740 5 70767 76920 47.92 147687 6 72379 65568 52.47 137947 7 82023 68130 54.63 150153 8 37920 74246 33.81 112166 9 33366 68280 32.83 101646 10 33524 67680 33.13 101204 11 34869 69489 33.41 104358 12 34169 70454 32.66 104623 13 33588 73365 31.40 106953 14 31855 73515 30.23 105370 15 31530 73967 29.89 105497 16 29268 73211 28.56 102479 17 27777 71351 28.02 99128 18 29418 73111 28.69 102529 19 27726 73707 27.33 101433 20 27888 73874 27.41 101762 21 28085 75341 27.15 103426 22 27775 74311 27.21 102086 23 27602 73454 27.31 101056 24 27204 73758 26.94 100962 25 26708 74105 26.49 100813 26 27092 72463 27.21 99555 27 27189 74781 26.66 101970 28 27778 73543 27.42 101321 29 27377 76484 26.36 103861 30 26460 75237 26.02 101697 31 27125 73767 26.89 100892 32 26320 72361 26.67 98681 33 27005 73566 26.85 100571 34 27816 72550 27.71 100366 35 26952 73199 26.91 100151 36 26759 74533 26.42 101292 37 25883 72126 26.41 98009 38 25822 73161 26.09 98983 39 26648 73873 26.51 100521 40 26529 72513 26.79 99042 41 26435 72148 26.81 98583 42 26731 73716 26.61 100447 43 26363 73303 26.45 99666 44 26075 72809 26.37 98884 45 26627 72791 26.78 99418 46 26703 73688 26.60 100391 47 26511 71562 27.03 98073 48 26125 72617 26.46 98742 49 27459 72330 27.52 99789 50 26260 73417 26.35 99677 51 26707 72795 26.84 99502 52 26891 75799 26.19 102690 53 25985 71866 26.56 97851 54 25504 72387 26.05 97891 55 25525 70337 26.63 95862 56 25494 69999 26.70 95493 57 25774 70414 26.80 96188 58 26741 70751 27.43 97492 59 27281 70064 28.03 97345 60 26296 70640 27.13 96936 61 26457 69620 27.54 96077 62 25826 71185 26.62 97011 63 25474 70211 26.62 95685 64 25097 69844 26.43 94941 65 25556 68904 27.05 94460 66 25941 69438 27.20 95379 67 25512 67224 27.51 92736 68 25110 67146 27.22 92256 69 25063 66621 27.34 91684 70 24784 66744 27.08 91528 71 24229 65410 27.03 89639 72 24056 65623 26.82 89679 73 23750 64590 26.88 88340 74 23791 64436 26.97 88227 75 22810 64718 26.06 87528 76 23077 64457 26.36 87534 77 23644 63011 27.29 86655 78 23203 63337 26.81 86540 79 23070 62560 26.94 85630 80 22446 62474 26.43 84920 81 22312 61501 26.62 83813 82 21726 61333 26.16 83059 83 22387 61923 26.55 84310 84 21971 62495 26.01 84466 85 21830 60188 26.62 82018 86 21337 59817 26.29 81154 87 21066 58980 26.32 80046 88 21171 58876 26.45 80047 89 20819 58089 26.38 78908 90 20542 58544 25.97 79086 91 20308 57603 26.07 77911 92 20233 57028 26.19 77261 93 19980 57314 25.85 77294 94 20117 56109 26.39 76226 95 20024 55720 26.44 75744 96 19784 56699 25.87 76483 97 19243 54229 26.19 73472 98 18032 51311 26.00 69343 99 14197 40582 25.92 54779 100 18723 51058 26.83 69781 101 18085 51312 26.06 69397 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 103808 143593 41.96 247401 2 62095 136947 31.20 199042 3 28428 133743 17.53 162171 4 16834 132988 11.24 149822 5 11319 122022 8.49 133341 6 12498 119678 9.46 132176 7 7090 146964 4.60 154054 8 4100 159441 2.51 163541 9 3090 152764 1.98 155854 10 3104 147999 2.05 151103 11 3548 150093 2.31 153641 12 3347 151509 2.16 154856 13 3054 146483 2.04 149537 14 3042 147797 2.02 150839 15 3187 151277 2.06 154464 16 2643 150517 1.73 153160 17 3477 149023 2.28 152500 18 2603 149250 1.71 151853 19 2402 150184 1.57 152586 20 2664 156901 1.67 159565 21 2604 159339 1.61 161943 22 2884 156194 1.81 159078 23 2832 158648 1.75 161480 24 2653 160577 1.63 163230 25 2673 155142 1.69 157815 26 4120 157521 2.55 161641 27 2546 158501 1.58 161047 28 2462 159453 1.52 161915 29 3533 161018 2.15 164551 30 2377 162455 1.44 164832 31 2389 158464 1.49 160853 32 2469 159960 1.52 162429 33 2651 160287 1.63 162938 34 2649 158230 1.65 160879 35 3550 159796 2.17 163346 36 2605 160614 1.60 163219 37 2467 155224 1.56 157691 38 3307 157934 2.05 161241 39 2368 157459 1.48 159827 40 2474 157275 1.55 159749 41 2426 158397 1.51 160823 42 2224 158401 1.38 160625 43 2330 155696 1.47 158026 44 2258 159432 1.40 161690 45 2399 157818 1.50 160217 46 2463 156732 1.55 159195 47 2692 156346 1.69 159038 48 2324 160129 1.43 162453 49 2535 155283 1.61 157818 50 2684 156108 1.69 158792 51 2505 158542 1.56 161047 52 2413 157849 1.51 160262 53 2555 155943 1.61 158498 54 2765 159099 1.71 161864 55 2614 155935 1.65 158549 56 2669 157766 1.66 160435 57 2711 157388 1.69 160099 58 2605 156349 1.64 158954 59 2779 157442 1.73 160221 60 2661 158252 1.65 160913 61 2771 156058 1.74 158829 62 2994 156920 1.87 159914 63 3124 154585 1.98 157709 64 2939 154404 1.87 157343 65 4080 153654 2.59 157734 66 2863 151184 1.86 154047 67 2983 147551 1.98 150534 68 3515 149945 2.29 153460 69 2611 148972 1.72 151583 70 2534 145873 1.71 148407 71 2644 145557 1.78 148201 72 2811 145192 1.90 148003 73 2752 143721 1.88 146473 74 3232 142570 2.22 145802 75 2522 143436 1.73 145958 76 2611 140018 1.83 142629 77 3301 139462 2.31 142763 78 2617 138495 1.85 141112 79 2650 136168 1.91 138818 80 2501 135121 1.82 137622 81 2507 133665 1.84 136172 82 2401 132111 1.78 134512 83 2552 134115 1.87 136667 84 2494 133453 1.83 135947 85 2596 131096 1.94 133692 86 2845 132127 2.11 134972 87 2445 132746 1.81 135191 88 2513 128440 1.92 130953 89 2868 128306 2.19 131174 90 2536 127869 1.94 130405 91 2612 125597 2.04 128209 92 2641 126079 2.05 128720 93 2965 124836 2.32 127801 94 2719 122486 2.17 125205 95 2868 121991 2.30 124859 96 2905 121261 2.34 124166 97 2807 110989 2.47 113796 98 2681 102742 2.54 105423 99 1298 65731 1.94 67029 100 1983 65964 2.92 67947 101 3727 111188 3.24 114915 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 133271 199023 40.11 332294 2 92943 211361 30.54 304304 3 62505 246473 20.23 308978 4 61754 257283 19.36 319037 5 60596 299898 16.81 360494 6 51485 326752 13.61 378237 7 37158 412696 8.26 449854 8 35736 446600 7.41 482336 9 26380 412451 6.01 438831 10 26416 402798 6.15 429214 11 36344 403448 8.26 439792 12 29708 408495 6.78 438203 13 33513 418691 7.41 452204 14 38039 429108 8.14 467147 15 31439 439601 6.67 471040 16 30861 447096 6.46 477957 17 37629 447737 7.75 485366 18 29592 465548 5.98 495140 19 29218 471061 5.84 500279 20 36629 489365 6.96 525994 21 30516 488083 5.88 518599 22 34165 487958 6.54 522123 23 37144 490256 7.04 527400 24 30849 488765 5.94 519614 25 33766 490478 6.44 524244 26 37161 495776 6.97 532937 27 31110 497869 5.88 528979 28 30248 501721 5.69 531969 29 37173 498606 6.94 535779 30 30950 493878 5.90 524828 31 32008 488210 6.15 520218 32 35339 492802 6.69 528141 33 30596 491875 5.86 522471 34 36188 496077 6.80 532265 35 37411 492065 7.07 529476 36 31453 496801 5.95 528254 37 30158 491573 5.78 521731 38 37653 496923 7.04 534576 39 30935 495385 5.88 526320 40 31412 493038 5.99 524450 41 37702 496049 7.06 533751 42 32539 500711 6.10 533250 43 35571 491979 6.74 527550 44 37192 497439 6.96 534631 45 33335 492195 6.34 525530 46 32428 493558 6.17 525986 47 36073 493315 6.81 529388 48 29842 494480 5.69 524322 49 30702 486526 5.94 517228 50 35225 486995 6.75 522220 51 30008 482372 5.86 512380 52 33146 481363 6.44 514509 53 36369 478469 7.06 514838 54 30593 480386 5.99 510979 55 31306 478745 6.14 510051 56 36798 479306 7.13 516104 57 29854 484511 5.80 514365 58 30684 479432 6.02 510116 59 36448 481589 7.04 518037 60 29756 475409 5.89 505165 61 32972 472407 6.52 505379 62 34991 468177 6.95 503168 63 29677 463851 6.01 493528 64 32477 462837 6.56 495314 65 33974 459051 6.89 493025 66 29090 456636 5.99 485726 67 29325 451338 6.10 480663 68 33011 449320 6.84 482331 69 28899 447598 6.06 476497 70 29533 445972 6.21 475505 71 33646 443270 7.05 476916 72 28867 442501 6.12 471368 73 32737 435857 6.99 468594 74 33745 436439 7.18 470184 75 29050 430598 6.32 459648 76 28933 428817 6.32 457750 77 34533 425110 7.51 459643 78 27256 422926 6.05 450182 79 28808 419341 6.43 448149 80 32914 416847 7.32 449761 81 29324 411738 6.65 441062 82 31251 407752 7.12 439003 83 33164 409038 7.50 442202 84 29529 403056 6.83 432585 85 28254 397969 6.63 426223 86 31137 394218 7.32 425355 87 26565 393061 6.33 419626 88 26231 390162 6.30 416393 89 31256 387051 7.47 418307 90 26906 384427 6.54 411333 91 27892 379284 6.85 407176 92 30291 379614 7.39 409905 93 26455 374708 6.59 401163 94 26460 371685 6.65 398145 95 29899 367176 7.53 397075 96 24802 359740 6.45 384542 97 24705 350925 6.58 375630 98 27241 328312 7.66 355553 99 14691 228320 6.05 243011 100 17174 201686 7.85 218860 101 26283 333366 7.31 359649 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 70283 73335 48.94 143618 2 60458 63158 48.91 123616 3 62621 69022 47.57 131643 4 56421 76406 42.48 132827 5 24596 98332 20.01 122928 6 15447 54458 22.10 69905 7 13303 58925 18.42 72228 8 14295 55561 20.46 69856 9 12469 47095 20.93 59564 10 13509 51841 20.67 65350 11 14515 51656 21.94 66171 12 13899 50161 21.70 64060 13 14423 47072 23.45 61495 14 14720 49311 22.99 64031 15 14137 43787 24.41 57924 16 13372 43080 23.69 56452 17 16594 46889 26.14 63483 18 15683 43769 26.38 59452 19 14968 43638 25.54 58606 20 13935 42335 24.76 56270 21 14604 41050 26.24 55654 22 14441 43524 24.91 57965 23 13769 40660 25.30 54429 24 13021 40208 24.46 53229 25 14554 40709 26.34 55263 26 13252 39460 25.14 52712 27 14460 39523 26.79 53983 28 13300 37203 26.34 50503 29 13665 39578 25.67 53243 30 12962 37100 25.89 50062 31 12499 38056 24.72 50555 32 12360 36413 25.34 48773 33 13786 36222 27.57 50008 34 13528 37720 26.40 51248 35 16243 40472 28.64 56715 36 13383 35931 27.14 49314 37 13791 37369 26.96 51160 38 12209 35539 25.57 47748 39 12890 35145 26.83 48035 40 14079 34950 28.72 49029 41 12032 34097 26.08 46129 42 12399 35186 26.06 47585 43 12304 34501 26.29 46805 44 11441 33652 25.37 45093 45 14600 36926 28.34 51526 46 11241 31330 26.41 42571 47 11382 31938 26.27 43320 48 11444 31374 26.73 42818 49 11123 33529 24.91 44652 50 10492 30201 25.78 40693 51 10563 29759 26.20 40322 52 10555 30643 25.62 41198 53 10659 29520 26.53 40179 54 10497 29385 26.32 39882 55 10812 28225 27.70 39037 56 9917 28262 25.98 38179 57 10503 28056 27.24 38559 58 9932 28396 25.91 38328 59 9618 26391 26.71 36009 60 9571 26871 26.26 36442 61 8872 26443 25.12 35315 62 8872 25014 26.18 33886 63 9345 24767 27.40 34112 64 8978 25281 26.21 34259 65 8931 23729 27.35 32660 66 9328 24779 27.35 34107 67 8711 25173 25.71 33884 68 9648 25982 27.08 35630 69 8695 24565 26.14 33260 70 8347 23733 26.02 32080 71 8708 22135 28.23 30843 72 7841 21888 26.37 29729 73 7866 22272 26.10 30138 74 7463 21610 25.67 29073 75 7512 22055 25.41 29567 76 7593 21031 26.53 28624 77 7512 21189 26.17 28701 78 7282 20920 25.82 28202 79 7120 20042 26.21 27162 80 6900 19560 26.08 26460 81 7184 19930 26.50 27114 82 7144 19940 26.38 27084 83 7229 19033 27.53 26262 84 7992 20648 27.91 28640 85 6639 19363 25.53 26002 86 6565 18914 25.77 25479 87 6526 18800 25.77 25326 88 6498 18412 26.09 24910 89 7037 18588 27.46 25625 90 6838 18470 27.02 25308 91 6584 18017 26.76 24601 92 6125 17629 25.79 23754 93 6234 17621 26.13 23855 94 6424 17637 26.70 24061 95 6333 17287 26.81 23620 96 6093 17110 26.26 23203 97 6857 17828 27.78 24685 98 5907 16366 26.52 22273 99 5385 0 100.00 5385 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 19613 91330 17.68 110943 2 19312 90249 17.63 109561 3 18479 92550 16.64 111029 4 19940 101553 16.41 121493 5 3194 181689 1.73 184883 6 2292 224518 1.01 226810 7 1550 125690 1.22 127240 8 1525 137361 1.10 138886 9 1559 113291 1.36 114850 10 1601 108526 1.45 110127 11 2279 148412 1.51 150691 12 1554 114996 1.33 116550 13 1676 114881 1.44 116557 14 1602 109935 1.44 111537 15 1622 107399 1.49 109021 16 1451 100039 1.43 101490 17 1554 107649 1.42 109203 18 2179 93534 2.28 95713 19 1459 94040 1.53 95499 20 1443 92487 1.54 93930 21 2270 87097 2.54 89367 22 1550 98181 1.55 99731 23 1530 96593 1.56 98123 24 1278 86264 1.46 87542 25 1388 87787 1.56 89175 26 1598 93459 1.68 95057 27 1491 85886 1.71 87377 28 1447 83334 1.71 84781 29 1435 89896 1.57 91331 30 1518 84675 1.76 86193 31 1284 82009 1.54 83293 32 1262 83041 1.50 84303 33 1515 99156 1.50 100671 34 1325 81526 1.60 82851 35 1441 84465 1.68 85906 36 1301 83306 1.54 84607 37 1298 77678 1.64 78976 38 1385 83044 1.64 84429 39 1500 77200 1.91 78700 40 1348 76189 1.74 77537 41 1379 73458 1.84 74837 42 1408 69451 1.99 70859 43 1532 72427 2.07 73959 44 1286 71707 1.76 72993 45 1241 65590 1.86 66831 46 1206 66005 1.79 67211 47 1363 67853 1.97 69216 48 1342 64786 2.03 66128 49 1347 67257 1.96 68604 50 1482 65984 2.20 67466 51 1264 61767 2.01 63031 52 1375 61035 2.20 62410 53 1580 67585 2.28 69165 54 1347 61513 2.14 62860 55 1264 62481 1.98 63745 56 1137 61000 1.83 62137 57 1755 59108 2.88 60863 58 1267 59998 2.07 61265 59 1131 59329 1.87 60460 60 1264 57092 2.17 58356 61 1016 56567 1.76 57583 62 1025 59839 1.68 60864 63 865 59711 1.43 60576 64 834 52683 1.56 53517 65 909 57586 1.55 58495 66 816 51704 1.55 52520 67 927 57643 1.58 58570 68 804 55586 1.43 56390 69 859 53032 1.59 53891 70 777 53341 1.44 54118 71 848 54786 1.52 55634 72 783 49997 1.54 50780 73 712 50093 1.40 50805 74 730 51881 1.39 52611 75 706 48875 1.42 49581 76 697 47323 1.45 48020 77 804 51020 1.55 51824 78 728 48896 1.47 49624 79 690 48143 1.41 48833 80 699 45695 1.51 46394 81 727 44901 1.59 45628 82 784 44753 1.72 45537 83 780 44930 1.71 45710 84 673 43180 1.53 43853 85 695 48713 1.41 49408 86 742 43413 1.68 44155 87 780 43057 1.78 43837 88 690 41326 1.64 42016 89 795 44062 1.77 44857 90 784 43128 1.79 43912 91 775 44167 1.72 44942 92 717 41869 1.68 42586 93 704 39991 1.73 40695 94 658 39704 1.63 40362 95 729 40214 1.78 40943 96 843 38411 2.15 39254 97 660 38415 1.69 39075 98 594 37699 1.55 38293 99 586 0 100.00 586 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 43699 118568 26.93 162267 2 40382 96502 29.50 136884 3 42584 98712 30.14 141296 4 44654 96678 31.60 141332 5 19316 199856 8.81 219172 6 19037 274451 6.49 293488 7 20192 369206 5.19 389398 8 17764 365052 4.64 382816 9 20823 343077 5.72 363900 10 19408 349055 5.27 368463 11 18731 346174 5.13 364905 12 17632 323521 5.17 341153 13 17334 334966 4.92 352300 14 17730 335928 5.01 353658 15 16588 346287 4.57 362875 16 15601 332158 4.49 347759 17 16787 333096 4.80 349883 18 15996 332176 4.59 348172 19 14933 307327 4.63 322260 20 17102 327409 4.96 344511 21 16068 304854 5.01 320922 22 17556 295389 5.61 312945 23 16848 290746 5.48 307594 24 15192 278113 5.18 293305 25 17439 277477 5.91 294916 26 15736 277172 5.37 292908 27 16223 296465 5.19 312688 28 15728 282266 5.28 297994 29 15839 278858 5.37 294697 30 17008 268023 5.97 285031 31 15891 260984 5.74 276875 32 15536 254251 5.76 269787 33 16677 251251 6.22 267928 34 15966 250798 5.99 266764 35 16009 258354 5.83 274363 36 14845 258499 5.43 273344 37 14806 251723 5.56 266529 38 15958 265849 5.66 281807 39 16022 243568 6.17 259590 40 15066 254724 5.58 269790 41 15888 239955 6.21 255843 42 15674 244762 6.02 260436 43 15811 230897 6.41 246708 44 14209 230783 5.80 244992 45 14948 230083 6.10 245031 46 14296 232554 5.79 246850 47 13661 227981 5.65 241642 48 14248 221593 6.04 235841 49 13833 225984 5.77 239817 50 13853 221236 5.89 235089 51 13951 214222 6.11 228173 52 13001 203074 6.02 216075 53 13057 205349 5.98 218406 54 12394 200411 5.82 212805 55 12433 207539 5.65 219972 56 12376 200367 5.82 212743 57 12123 205139 5.58 217262 58 11641 198092 5.55 209733 59 12270 190526 6.05 202796 60 11543 195679 5.57 207222 61 12350 185058 6.26 197408 62 11694 183478 5.99 195172 63 11027 185477 5.61 196504 64 11734 178939 6.15 190673 65 10842 181337 5.64 192179 66 10692 175175 5.75 185867 67 10654 175340 5.73 185994 68 10670 181157 5.56 191827 69 10762 176285 5.75 187047 70 10660 171314 5.86 181974 71 10199 167863 5.73 178062 72 10986 167288 6.16 178274 73 10566 165078 6.02 175644 74 10022 165230 5.72 175252 75 9970 164820 5.70 174790 76 9412 158595 5.60 168007 77 10468 157773 6.22 168241 78 10058 159366 5.94 169424 79 9945 162776 5.76 172721 80 10292 155722 6.20 166014 81 10331 156275 6.20 166606 82 10156 153899 6.19 164055 83 9423 153151 5.80 162574 84 9755 153190 5.99 162945 85 9080 149093 5.74 158173 86 9056 149511 5.71 158567 87 8994 147443 5.75 156437 88 9015 142019 5.97 151034 89 8892 141553 5.91 150445 90 9018 143091 5.93 152109 91 8780 141401 5.85 150181 92 8302 139844 5.60 148146 93 8291 138274 5.66 146565 94 7999 135497 5.57 143496 95 8204 133042 5.81 141246 96 7930 131499 5.69 139429 97 7689 131741 5.51 139430 98 7224 126133 5.42 133357 99 5226 0 100.00 5226