/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-226_S34_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-226_S34_L004_R2_001_val_2.fq.gz
Data processed at 23:21 on 2018-11-15
Alignment
Sequence pairs analysed in total
11133150
Paired-end alignments with a unique best hit
6684653
Pairs without alignments under any condition
2473880
Pairs that did not map uniquely
1974617
Genomic sequence context not extractable (edges of chromosomes)
45481
Cytosine Methylation
Total C's analysed
212284206
Methylated C's in CpG context
7366941
Methylated C's in CHG context
1216331
Methylated C's in CHH context
7721126
Methylated C's in Unknown context
235771
Unmethylated C's in CpG context
23807607
Unmethylated C's in CHG context
44745401
Unmethylated C's in CHH context
127426800
Unmethylated C's in Unknown context
1014214
Percentage methylation (CpG context)
23.6%
Percentage methylation (CHG context)
2.6%
Percentage methylation (CHH context)
5.7%
Methylated C's in Unknown context
N/A%
Alignment to Individual Bisulfite Strands
OT
3254313
original top strand
CTOT
0
complementary to original top strand
CTOB
0
complementary to original bottom strand
OB
3384859
original bottom strand
Deduplication
Alignments analysed
6639172
Unique alignments
4713521
Duplicates removed
1925651
Duplicated alignments were found at 1041289 different positions