Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-226_S34_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-226_S34_L004_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 11133150
Paired-end alignments with a unique best hit 6684653
Pairs without alignments under any condition 2473880
Pairs that did not map uniquely 1974617
Genomic sequence context not extractable (edges of chromosomes) 45481

Cytosine Methylation

Total C's analysed 212284206
Methylated C's in CpG context 7366941
Methylated C's in CHG context 1216331
Methylated C's in CHH context 7721126
Methylated C's in Unknown context 235771
Unmethylated C's in CpG context 23807607
Unmethylated C's in CHG context 44745401
Unmethylated C's in CHH context 127426800
Unmethylated C's in Unknown context 1014214
Percentage methylation (CpG context) 23.6%
Percentage methylation (CHG context) 2.6%
Percentage methylation (CHH context) 5.7%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 3254313 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 3384859 original bottom strand