EPI-221_S33_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 6264711 lines in total Total number of methylation call strings processed: 12529422 Final Cytosine Methylation Report ================================= Total number of C's analysed: 136529341 Total methylated C's in CpG context: 5133920 Total methylated C's in CHG context: 875886 Total methylated C's in CHH context: 5525110 Total C to T conversions in CpG context: 13487431 Total C to T conversions in CHG context: 28017758 Total C to T conversions in CHH context: 83489236 C methylated in CpG context: 27.6% C methylated in CHG context: 3.0% C methylated in CHH context: 6.2%