CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 92972 150599 38.17 243571 2 89050 167568 34.70 256618 3 85551 148836 36.50 234387 4 89298 121875 42.29 211173 5 86897 105659 45.13 192556 6 87857 89429 49.56 177286 7 98118 91886 51.64 190004 8 47199 101570 31.73 148769 9 41795 93482 30.90 135277 10 42075 92549 31.25 134624 11 44202 94719 31.82 138921 12 43349 95445 31.23 138794 13 42465 97658 30.31 140123 14 41032 99073 29.29 140105 15 40185 99528 28.76 139713 16 37450 98998 27.45 136448 17 36021 96622 27.16 132643 18 37376 99207 27.37 136583 19 36183 99029 26.76 135212 20 36298 100703 26.49 137001 21 36250 101883 26.24 138133 22 35914 100015 26.42 135929 23 35469 99775 26.23 135244 24 35270 99814 26.11 135084 25 35057 99552 26.04 134609 26 35146 97748 26.45 132894 27 34619 100817 25.56 135436 28 35735 99762 26.37 135497 29 34822 100501 25.73 135323 30 33803 100642 25.14 134445 31 35022 98588 26.21 133610 32 33866 97297 25.82 131163 33 34346 98207 25.91 132553 34 34960 97734 26.35 132694 35 34636 97596 26.19 132232 36 33984 99578 25.44 133562 37 33330 96795 25.61 130125 38 32695 97097 25.19 129792 39 33743 97996 25.61 131739 40 33827 96555 25.94 130382 41 33308 96074 25.74 129382 42 34217 98643 25.75 132860 43 33568 96961 25.72 130529 44 32999 95706 25.64 128705 45 33598 96203 25.88 129801 46 33553 97120 25.68 130673 47 33102 95433 25.75 128535 48 32991 96275 25.52 129266 49 34066 95795 26.23 129861 50 32703 96442 25.32 129145 51 32977 95331 25.70 128308 52 33539 98020 25.49 131559 53 32466 94489 25.57 126955 54 32193 94176 25.48 126369 55 32093 92294 25.80 124387 56 32472 92374 26.01 124846 57 32835 92495 26.20 125330 58 33428 93363 26.36 126791 59 33832 92179 26.85 126011 60 33376 93263 26.36 126639 61 33582 90895 26.98 124477 62 32673 92017 26.20 124690 63 31963 91064 25.98 123027 64 31798 90303 26.04 122101 65 32044 89130 26.44 121174 66 32284 89369 26.54 121653 67 31223 86767 26.46 117990 68 30949 86652 26.32 117601 69 30655 86070 26.26 116725 70 30054 85302 26.05 115356 71 29603 83365 26.20 112968 72 29498 83413 26.13 112911 73 29012 82242 26.08 111254 74 28724 82003 25.94 110727 75 28351 81904 25.71 110255 76 28022 81052 25.69 109074 77 28182 80385 25.96 108567 78 28152 79945 26.04 108097 79 27567 79108 25.84 106675 80 27020 78590 25.58 105610 81 26478 77790 25.39 104268 82 25906 76696 25.25 102602 83 26296 77514 25.33 103810 84 26109 77201 25.27 103310 85 25718 75474 25.42 101192 86 25582 74331 25.60 99913 87 24757 73822 25.11 98579 88 24486 73734 24.93 98220 89 24345 71999 25.27 96344 90 24202 72514 25.02 96716 91 23793 70960 25.11 94753 92 23558 70657 25.00 94215 93 23783 70159 25.32 93942 94 23217 69323 25.09 92540 95 22815 69204 24.79 92019 96 23066 69541 24.91 92607 97 22067 67171 24.73 89238 98 20909 63241 24.85 84150 99 16308 49982 24.60 66290 100 21204 62713 25.27 83917 101 20328 63781 24.17 84109 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 134686 196298 40.69 330984 2 80123 189501 29.72 269624 3 35957 181733 16.52 217690 4 20849 183166 10.22 204015 5 14121 166954 7.80 181075 6 14617 161574 8.30 176191 7 8788 200826 4.19 209614 8 4769 216447 2.16 221216 9 3793 208196 1.79 211989 10 3815 201466 1.86 205281 11 4249 202860 2.05 207109 12 3973 202788 1.92 206761 13 3836 196551 1.91 200387 14 3705 197432 1.84 201137 15 3704 202441 1.80 206145 16 3405 202654 1.65 206059 17 4413 199575 2.16 203988 18 3370 199171 1.66 202541 19 2930 199115 1.45 202045 20 3403 211194 1.59 214597 21 3300 212997 1.53 216297 22 3601 209004 1.69 212605 23 3526 211487 1.64 215013 24 3339 213193 1.54 216532 25 3357 207725 1.59 211082 26 4806 208789 2.25 213595 27 3271 211669 1.52 214940 28 3276 212306 1.52 215582 29 4330 213865 1.98 218195 30 3021 214405 1.39 217426 31 3169 208860 1.49 212029 32 3188 211782 1.48 214970 33 3341 211474 1.56 214815 34 3407 208891 1.60 212298 35 4142 210174 1.93 214316 36 3397 210647 1.59 214044 37 3119 203998 1.51 207117 38 3929 207197 1.86 211126 39 3147 207102 1.50 210249 40 3113 206312 1.49 209425 41 3194 207420 1.52 210614 42 3176 207287 1.51 210463 43 2957 202701 1.44 205658 44 2961 205752 1.42 208713 45 3101 205522 1.49 208623 46 3114 202568 1.51 205682 47 3425 204221 1.65 207646 48 2904 208305 1.37 211209 49 3192 202056 1.56 205248 50 3455 202504 1.68 205959 51 3223 205189 1.55 208412 52 3182 204365 1.53 207547 53 3275 201307 1.60 204582 54 3578 204180 1.72 207758 55 3349 201474 1.64 204823 56 3419 203222 1.65 206641 57 3537 203889 1.71 207426 58 3469 200541 1.70 204010 59 3698 202570 1.79 206268 60 3519 202467 1.71 205986 61 3627 198661 1.79 202288 62 3768 198038 1.87 201806 63 3852 196497 1.92 200349 64 3821 195078 1.92 198899 65 4729 193457 2.39 198186 66 3677 189368 1.90 193045 67 3717 185721 1.96 189438 68 4041 187416 2.11 191457 69 3267 185890 1.73 189157 70 3273 182036 1.77 185309 71 3402 181189 1.84 184591 72 3375 181023 1.83 184398 73 3449 178130 1.90 181579 74 3853 177665 2.12 181518 75 3189 177246 1.77 180435 76 3142 171639 1.80 174781 77 3825 172563 2.17 176388 78 3131 170116 1.81 173247 79 3255 166423 1.92 169678 80 3214 165636 1.90 168850 81 3025 164860 1.80 167885 82 3134 161566 1.90 164700 83 3274 162908 1.97 166182 84 3052 163111 1.84 166163 85 3095 160641 1.89 163736 86 3341 160411 2.04 163752 87 3050 160231 1.87 163281 88 2985 156941 1.87 159926 89 3188 154975 2.02 158163 90 2972 155089 1.88 158061 91 3026 151895 1.95 154921 92 3177 152522 2.04 155699 93 3299 151236 2.13 154535 94 3193 147537 2.12 150730 95 3220 146999 2.14 150219 96 3244 146469 2.17 149713 97 3334 133177 2.44 136511 98 3016 123413 2.39 126429 99 1639 79813 2.01 81452 100 2291 80780 2.76 83071 101 4323 133942 3.13 138265 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 180027 267166 40.26 447193 2 118741 289158 29.11 407899 3 76673 326575 19.01 403248 4 72852 345970 17.39 418822 5 70716 408011 14.77 478727 6 60937 443325 12.08 504262 7 44011 560188 7.28 604199 8 40255 605541 6.23 645796 9 31031 560069 5.25 591100 10 31299 544242 5.44 575541 11 41692 546555 7.09 588247 12 34857 551256 5.95 586113 13 38769 564923 6.42 603692 14 43689 577228 7.04 620917 15 36557 591309 5.82 627866 16 36916 599640 5.80 636556 17 42423 601791 6.59 644214 18 34884 623416 5.30 658300 19 35190 634284 5.26 669474 20 41739 654804 5.99 696543 21 36013 653934 5.22 689947 22 39698 652390 5.74 692088 23 42744 652738 6.15 695482 24 36443 652370 5.29 688813 25 39408 655779 5.67 695187 26 42993 660905 6.11 703898 27 36476 664595 5.20 701071 28 36278 665711 5.17 701989 29 42645 664926 6.03 707571 30 36401 658844 5.24 695245 31 37038 649764 5.39 686802 32 39861 652561 5.76 692422 33 36019 651513 5.24 687532 34 41349 657478 5.92 698827 35 42243 650838 6.09 693081 36 35919 657605 5.18 693524 37 35435 651202 5.16 686637 38 42717 655439 6.12 698156 39 35621 649233 5.20 684854 40 36594 646938 5.35 683532 41 42456 649945 6.13 692401 42 37376 652409 5.42 689785 43 39804 646250 5.80 686054 44 41100 650890 5.94 691990 45 37841 644847 5.54 682688 46 36681 645259 5.38 681940 47 39622 643415 5.80 683037 48 33768 642447 4.99 676215 49 34406 636383 5.13 670789 50 39697 632814 5.90 672511 51 33815 625991 5.12 659806 52 36369 624662 5.50 661031 53 39508 621088 5.98 660596 54 34514 621064 5.26 655578 55 35394 617140 5.42 652534 56 39697 616055 6.05 655752 57 33400 619468 5.12 652868 58 34005 614407 5.24 648412 59 39751 613955 6.08 653706 60 33150 604911 5.20 638061 61 36358 599521 5.72 635879 62 38145 594096 6.03 632241 63 33152 587403 5.34 620555 64 35689 582599 5.77 618288 65 36614 577191 5.97 613805 66 32426 572243 5.36 604669 67 32364 567078 5.40 599442 68 35797 563466 5.97 599263 69 31821 560512 5.37 592333 70 31834 554487 5.43 586321 71 35815 552541 6.09 588356 72 31520 550307 5.42 581827 73 34945 541317 6.06 576262 74 35851 539955 6.23 575806 75 31441 533615 5.56 565056 76 31609 529766 5.63 561375 77 36299 525289 6.46 561588 78 29251 520598 5.32 549849 79 30727 516399 5.62 547126 80 35030 512416 6.40 547446 81 31269 505357 5.83 536626 82 32451 500288 6.09 532739 83 34787 500378 6.50 535165 84 31035 494026 5.91 525061 85 30066 486542 5.82 516608 86 32861 482509 6.38 515370 87 27915 478335 5.51 506250 88 28081 474055 5.59 502136 89 32758 469565 6.52 502323 90 28378 467897 5.72 496275 91 29321 461058 5.98 490379 92 31172 459608 6.35 490780 93 28123 455497 5.82 483620 94 28166 450756 5.88 478922 95 31265 445334 6.56 476599 96 26308 438237 5.66 464545 97 26343 426429 5.82 452772 98 28713 397876 6.73 426589 99 15940 277349 5.43 293289 100 17645 246147 6.69 263792 101 27646 404041 6.40 431687 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 81625 94785 46.27 176410 2 71088 82331 46.34 153419 3 75006 91005 45.18 166011 4 69123 101187 40.59 170310 5 29777 130749 18.55 160526 6 18476 72227 20.37 90703 7 16238 77300 17.36 93538 8 16786 73047 18.69 89833 9 14631 61286 19.27 75917 10 16535 69046 19.32 85581 11 17496 67924 20.48 85420 12 16496 65810 20.04 82306 13 17400 63218 21.58 80618 14 17755 65424 21.35 83179 15 17346 58931 22.74 76277 16 16305 56616 22.36 72921 17 20014 62446 24.27 82460 18 19178 58835 24.58 78013 19 18360 58371 23.93 76731 20 17029 56877 23.04 73906 21 17963 55257 24.53 73220 22 17792 57818 23.53 75610 23 16574 54502 23.32 71076 24 15898 52818 23.14 68716 25 17845 54813 24.56 72658 26 16109 52192 23.59 68301 27 17732 53069 25.04 70801 28 15925 49913 24.19 65838 29 16853 52645 24.25 69498 30 16068 49158 24.63 65226 31 15563 50816 23.45 66379 32 14972 47966 23.79 62938 33 17096 47324 26.54 64420 34 16268 49170 24.86 65438 35 19813 53808 26.91 73621 36 16185 47381 25.46 63566 37 16842 49319 25.46 66161 38 14987 46774 24.27 61761 39 15619 45807 25.43 61426 40 16815 45199 27.11 62014 41 14928 44625 25.07 59553 42 15035 46137 24.58 61172 43 14871 44714 24.96 59585 44 13718 43528 23.96 57246 45 17109 47311 26.56 64420 46 13723 40730 25.20 54453 47 13844 41502 25.01 55346 48 13924 40768 25.46 54692 49 13347 42713 23.81 56060 50 12684 38670 24.70 51354 51 12512 38324 24.61 50836 52 12722 39508 24.36 52230 53 12738 38162 25.03 50900 54 12694 37998 25.04 50692 55 12728 36016 26.11 48744 56 11642 35737 24.57 47379 57 12242 36244 25.25 48486 58 11714 35962 24.57 47676 59 11051 33313 24.91 44364 60 11172 34150 24.65 45322 61 10444 32788 24.16 43232 62 10317 31462 24.69 41779 63 11131 31567 26.07 42698 64 10494 32069 24.66 42563 65 10296 30151 25.46 40447 66 10820 31209 25.74 42029 67 9913 31607 23.88 41520 68 10994 32968 25.01 43962 69 9942 30823 24.39 40765 70 9704 29782 24.58 39486 71 9982 27828 26.40 37810 72 9619 27371 26.00 36990 73 9364 28000 25.06 37364 74 8781 27822 23.99 36603 75 8852 27687 24.23 36539 76 8922 26340 25.30 35262 77 8920 26810 24.97 35730 78 8734 26819 24.57 35553 79 8425 25645 24.73 34070 80 8185 25108 24.58 33293 81 8264 25204 24.69 33468 82 8207 25291 24.50 33498 83 8432 24015 25.99 32447 84 9253 25990 26.25 35243 85 8018 24612 24.57 32630 86 7778 24090 24.41 31868 87 7895 23700 24.99 31595 88 7960 23506 25.30 31466 89 8256 23937 25.65 32193 90 8098 23570 25.57 31668 91 7568 22931 24.81 30499 92 7518 22352 25.17 29870 93 7348 22492 24.62 29840 94 7569 22059 25.55 29628 95 7590 21798 25.83 29388 96 7244 21852 24.90 29096 97 7938 23440 25.30 31378 98 7180 21054 25.43 28234 99 6518 0 100.00 6518 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 25471 117422 17.83 142893 2 25594 118359 17.78 143953 3 24371 122115 16.64 146486 4 26279 132061 16.60 158340 5 3822 238364 1.58 242186 6 2939 293702 0.99 296641 7 1945 163273 1.18 165218 8 1755 177998 0.98 179753 9 1835 146380 1.24 148215 10 1781 139468 1.26 141249 11 2756 188724 1.44 191480 12 1966 149639 1.30 151605 13 1820 148471 1.21 150291 14 1821 143450 1.25 145271 15 1874 137942 1.34 139816 16 1738 128601 1.33 130339 17 2000 139467 1.41 141467 18 2658 121711 2.14 124369 19 1880 121817 1.52 123697 20 2040 120561 1.66 122601 21 2915 113909 2.50 116824 22 2150 128677 1.64 130827 23 1935 124433 1.53 126368 24 1751 111660 1.54 113411 25 1910 114344 1.64 116254 26 2064 120246 1.69 122310 27 1983 110779 1.76 112762 28 1875 107242 1.72 109117 29 2036 116316 1.72 118352 30 2096 109424 1.88 111520 31 1829 106416 1.69 108245 32 1836 107579 1.68 109415 33 2094 127936 1.61 130030 34 1877 105127 1.75 107004 35 1953 106970 1.79 108923 36 1849 107426 1.69 109275 37 1780 99014 1.77 100794 38 2076 107047 1.90 109123 39 1964 99267 1.94 101231 40 1898 97025 1.92 98923 41 1998 93413 2.09 95411 42 1990 87726 2.22 89716 43 2275 91674 2.42 93949 44 1838 91140 1.98 92978 45 1774 82305 2.11 84079 46 1735 83578 2.03 85313 47 1917 85687 2.19 87604 48 1763 81451 2.12 83214 49 1802 85185 2.07 86987 50 1990 82249 2.36 84239 51 1660 76739 2.12 78399 52 1789 75740 2.31 77529 53 2049 83755 2.39 85804 54 1695 75926 2.18 77621 55 1695 77599 2.14 79294 56 1601 75414 2.08 77015 57 2017 72669 2.70 74686 58 1553 73291 2.07 74844 59 1300 72713 1.76 74013 60 1422 69806 2.00 71228 61 1101 69755 1.55 70856 62 1118 72843 1.51 73961 63 1010 72745 1.37 73755 64 895 65423 1.35 66318 65 1006 70207 1.41 71213 66 903 63137 1.41 64040 67 960 70006 1.35 70966 68 941 67735 1.37 68676 69 974 64552 1.49 65526 70 944 65179 1.43 66123 71 991 66697 1.46 67688 72 826 61744 1.32 62570 73 821 61219 1.32 62040 74 834 62874 1.31 63708 75 819 59795 1.35 60614 76 741 58225 1.26 58966 77 886 62382 1.40 63268 78 824 59633 1.36 60457 79 764 59029 1.28 59793 80 743 56468 1.30 57211 81 877 54953 1.57 55830 82 771 53952 1.41 54723 83 786 55014 1.41 55800 84 778 53009 1.45 53787 85 822 59022 1.37 59844 86 783 53300 1.45 54083 87 818 53064 1.52 53882 88 751 50773 1.46 51524 89 841 54354 1.52 55195 90 810 53002 1.51 53812 91 833 54366 1.51 55199 92 770 52284 1.45 53054 93 767 49695 1.52 50462 94 776 48866 1.56 49642 95 878 49574 1.74 50452 96 981 48150 2.00 49131 97 747 47648 1.54 48395 98 681 46995 1.43 47676 99 738 0 100.00 738 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 56447 160467 26.02 216914 2 51219 130959 28.11 182178 3 53987 133335 28.82 187322 4 55403 129513 29.96 184916 5 21719 261393 7.67 283112 6 22476 360711 5.87 383187 7 23205 481803 4.59 505008 8 20800 477220 4.18 498020 9 24341 447916 5.15 472257 10 22415 458666 4.66 481081 11 22123 452422 4.66 474545 12 20889 422938 4.71 443827 13 20530 438298 4.47 458828 14 21150 441617 4.57 462767 15 19900 453900 4.20 473800 16 18284 431951 4.06 450235 17 19990 435828 4.39 455818 18 19225 434470 4.24 453695 19 17588 400987 4.20 418575 20 20898 425300 4.68 446198 21 19581 396009 4.71 415590 22 20888 386847 5.12 407735 23 19915 378524 5.00 398439 24 18249 360072 4.82 378321 25 20593 359297 5.42 379890 26 18608 357096 4.95 375704 27 19464 381442 4.86 400906 28 18699 365783 4.86 384482 29 18961 360409 5.00 379370 30 20092 345454 5.50 365546 31 19045 334234 5.39 353279 32 17982 325739 5.23 343721 33 19929 320946 5.85 340875 34 18477 322121 5.42 340598 35 18621 330166 5.34 348787 36 17440 327642 5.05 345082 37 17217 320917 5.09 338134 38 18593 334110 5.27 352703 39 18582 308356 5.68 326938 40 17488 319807 5.18 337295 41 18372 303143 5.71 321515 42 18036 307685 5.54 325721 43 17973 290201 5.83 308174 44 16209 290132 5.29 306341 45 17112 288219 5.60 305331 46 16390 289120 5.36 305510 47 15473 283366 5.18 298839 48 16207 275840 5.55 292047 49 15327 278248 5.22 293575 50 15438 273455 5.34 288893 51 15603 266379 5.53 281982 52 14399 250689 5.43 265088 53 14268 252267 5.35 266535 54 13602 246254 5.23 259856 55 13391 254766 4.99 268157 56 13535 246588 5.20 260123 57 13323 250267 5.05 263590 58 12126 243551 4.74 255677 59 12913 233287 5.24 246200 60 12378 238913 4.93 251291 61 13195 226816 5.50 240011 62 11879 225640 5.00 237519 63 11521 226582 4.84 238103 64 12247 219829 5.28 232076 65 11163 223944 4.75 235107 66 11426 215773 5.03 227199 67 11169 215779 4.92 226948 68 10829 223299 4.63 234128 69 11602 217207 5.07 228809 70 10954 210789 4.94 221743 71 10439 206776 4.81 217215 72 11420 206921 5.23 218341 73 10836 203020 5.07 213856 74 10111 203029 4.74 213140 75 10484 203227 4.91 213711 76 9945 195515 4.84 205460 77 10887 195108 5.29 205995 78 10677 196160 5.16 206837 79 10173 199932 4.84 210105 80 10401 193189 5.11 203590 81 10830 193881 5.29 204711 82 10161 190545 5.06 200706 83 9461 189476 4.76 198937 84 10111 188390 5.09 198501 85 9321 185078 4.79 194399 86 9328 184075 4.82 193403 87 9336 181437 4.89 190773 88 9170 176635 4.94 185805 89 8954 175313 4.86 184267 90 9081 176359 4.90 185440 91 8831 174002 4.83 182833 92 8496 173335 4.67 181831 93 8491 171466 4.72 179957 94 7868 168803 4.45 176671 95 8272 165196 4.77 173468 96 8186 163172 4.78 171358 97 7714 163637 4.50 171351 98 7292 157169 4.43 164461 99 5323 0 100.00 5323