Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-221_S33_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-221_S33_L004_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 16300374
Paired-end alignments with a unique best hit 8990034
Pairs without alignments under any condition 4456627
Pairs that did not map uniquely 2853713
Genomic sequence context not extractable (edges of chromosomes) 47414

Cytosine Methylation

Total C's analysed 273613473
Methylated C's in CpG context 9377073
Methylated C's in CHG context 1595448
Methylated C's in CHH context 8983360
Methylated C's in Unknown context 285276
Unmethylated C's in CpG context 30295668
Unmethylated C's in CHG context 57897191
Unmethylated C's in CHH context 165464733
Unmethylated C's in Unknown context 1344837
Percentage methylation (CpG context) 23.6%
Percentage methylation (CHG context) 2.7%
Percentage methylation (CHH context) 5.1%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 4435955 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 4506665 original bottom strand