EPI-220_S32_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 5834820 lines in total Total number of methylation call strings processed: 11669640 Final Cytosine Methylation Report ================================= Total number of C's analysed: 129326626 Total methylated C's in CpG context: 4785260 Total methylated C's in CHG context: 836412 Total methylated C's in CHH context: 5952112 Total C to T conversions in CpG context: 12777350 Total C to T conversions in CHG context: 26383374 Total C to T conversions in CHH context: 78592118 C methylated in CpG context: 27.2% C methylated in CHG context: 3.1% C methylated in CHH context: 7.0%