CpG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 85685 144734 37.19 230419 2 81358 159777 33.74 241135 3 78885 140783 35.91 219668 4 82840 113719 42.15 196559 5 80421 99878 44.60 180299 6 80994 83561 49.22 164555 7 91037 87790 50.91 178827 8 43299 94711 31.37 138010 9 38843 87233 30.81 126076 10 38900 86007 31.14 124907 11 40973 89176 31.48 130149 12 39891 89703 30.78 129594 13 39179 92323 29.79 131502 14 38033 92804 29.07 130837 15 36963 93431 28.35 130394 16 34602 92047 27.32 126649 17 33494 89972 27.13 123466 18 34630 92568 27.23 127198 19 33269 92712 26.41 125981 20 33348 93677 26.25 127025 21 33562 94992 26.11 128554 22 32924 93730 26.00 126654 23 32543 92713 25.98 125256 24 32183 92956 25.72 125139 25 31920 93563 25.44 125483 26 32446 91581 26.16 124027 27 32219 94478 25.43 126697 28 32884 93643 25.99 126527 29 32054 95406 25.15 127460 30 31537 94074 25.11 125611 31 32329 92960 25.80 125289 32 31217 91030 25.54 122247 33 31952 92816 25.61 124768 34 32368 92361 25.95 124729 35 31782 92266 25.62 124048 36 31547 94314 25.06 125861 37 30968 91806 25.22 122774 38 30376 91780 24.87 122156 39 31370 93053 25.21 124423 40 31183 92227 25.27 123410 41 31102 91819 25.30 122921 42 31609 93130 25.34 124739 43 30889 92697 24.99 123586 44 31107 91926 25.28 123033 45 31385 91533 25.53 122918 46 31291 92690 25.24 123981 47 30803 90869 25.32 121672 48 31389 91697 25.50 123086 49 31790 90916 25.91 122706 50 30997 92324 25.14 123321 51 30902 92113 25.12 123015 52 31362 94954 24.83 126316 53 30428 90377 25.19 120805 54 30245 90512 25.05 120757 55 30057 88572 25.34 118629 56 30224 88489 25.46 118713 57 30584 88625 25.66 119209 58 31059 89394 25.79 120453 59 31726 88601 26.37 120327 60 31152 88521 26.03 119673 61 31365 87256 26.44 118621 62 30599 88711 25.65 119310 63 30000 87326 25.57 117326 64 29877 87141 25.53 117018 65 30200 85534 26.09 115734 66 30638 86137 26.24 116775 67 29550 83574 26.12 113124 68 29229 83502 25.93 112731 69 29301 82558 26.19 111859 70 28783 82380 25.89 111163 71 28238 80691 25.92 108929 72 27767 81300 25.46 109067 73 27580 79245 25.82 106825 74 27108 79471 25.43 106579 75 26685 78770 25.30 105455 76 26576 78811 25.22 105387 77 26909 76954 25.91 103863 78 26733 78027 25.52 104760 79 26298 76273 25.64 102571 80 25593 75977 25.20 101570 81 25177 74932 25.15 100109 82 24977 74339 25.15 99316 83 25584 75141 25.40 100725 84 25047 74893 25.06 99940 85 24666 73064 25.24 97730 86 23840 71961 24.88 95801 87 23632 71706 24.79 95338 88 23589 71313 24.86 94902 89 23347 69897 25.04 93244 90 23210 70194 24.85 93404 91 22633 68885 24.73 91518 92 22489 68404 24.74 90893 93 22391 68452 24.65 90843 94 22256 67535 24.79 89791 95 22032 66961 24.76 88993 96 22041 67982 24.48 90023 97 21128 64811 24.58 85939 98 19870 61677 24.37 81547 99 15680 48363 24.48 64043 100 20370 61912 24.76 82282 101 20140 60949 24.84 81089 CHG context (R1) ================ position count methylated count unmethylated % methylation coverage 1 122476 184186 39.94 306662 2 72357 175580 29.18 247937 3 33875 169315 16.67 203190 4 20039 169900 10.55 189939 5 13487 155672 7.97 169159 6 15077 151439 9.05 166516 7 8225 186476 4.22 194701 8 4753 199147 2.33 203900 9 3655 192320 1.87 195975 10 3752 186558 1.97 190310 11 4206 187202 2.20 191408 12 3873 188962 2.01 192835 13 3644 183335 1.95 186979 14 3673 183886 1.96 187559 15 3810 188067 1.99 191877 16 3213 186709 1.69 189922 17 4561 184691 2.41 189252 18 3368 185243 1.79 188611 19 3053 185640 1.62 188693 20 3341 194953 1.68 198294 21 3174 196673 1.59 199847 22 3574 193164 1.82 196738 23 3385 195381 1.70 198766 24 3239 199386 1.60 202625 25 3281 192741 1.67 196022 26 4868 194854 2.44 199722 27 3197 197168 1.60 200365 28 3171 197118 1.58 200289 29 4292 199101 2.11 203393 30 2869 200153 1.41 203022 31 2974 195554 1.50 198528 32 3051 197551 1.52 200602 33 3154 198992 1.56 202146 34 3336 196248 1.67 199584 35 4198 197333 2.08 201531 36 3175 197993 1.58 201168 37 3100 192421 1.59 195521 38 4031 195740 2.02 199771 39 2908 194935 1.47 197843 40 2966 195431 1.49 198397 41 3048 194485 1.54 197533 42 2792 195934 1.40 198726 43 2798 191851 1.44 194649 44 2926 195178 1.48 198104 45 2957 195072 1.49 198029 46 3050 191573 1.57 194623 47 3306 193855 1.68 197161 48 2893 197301 1.45 200194 49 3180 191239 1.64 194419 50 3464 192766 1.77 196230 51 3045 194266 1.54 197311 52 3121 194032 1.58 197153 53 3096 191666 1.59 194762 54 3481 195018 1.75 198499 55 3225 191640 1.65 194865 56 3599 192557 1.83 196156 57 3371 193447 1.71 196818 58 3411 190515 1.76 193926 59 3624 191572 1.86 195196 60 3378 193419 1.72 196797 61 3451 189464 1.79 192915 62 3738 189761 1.93 193499 63 3703 188126 1.93 191829 64 3820 187416 2.00 191236 65 5025 185837 2.63 190862 66 3779 182865 2.02 186644 67 3824 179122 2.09 182946 68 4411 180454 2.39 184865 69 3333 178719 1.83 182052 70 3258 174517 1.83 177775 71 3376 174353 1.90 177729 72 3394 173968 1.91 177362 73 3272 171698 1.87 174970 74 3921 171530 2.23 175451 75 3147 170705 1.81 173852 76 3116 166011 1.84 169127 77 3970 167265 2.32 171235 78 3022 163295 1.82 166317 79 3236 160794 1.97 164030 80 3177 160627 1.94 163804 81 3075 158760 1.90 161835 82 3012 155781 1.90 158793 83 3278 157624 2.04 160902 84 3152 157860 1.96 161012 85 3076 154007 1.96 157083 86 3373 155252 2.13 158625 87 3084 155100 1.95 158184 88 3121 151011 2.02 154132 89 3355 150263 2.18 153618 90 3002 150687 1.95 153689 91 3136 147045 2.09 150181 92 3276 146274 2.19 149550 93 3492 145466 2.34 148958 94 3211 142871 2.20 146082 95 3335 142141 2.29 145476 96 3400 140961 2.36 144361 97 3258 128676 2.47 131934 98 3153 118527 2.59 121680 99 1571 77288 1.99 78859 100 2445 76892 3.08 79337 101 4560 128564 3.43 133124 CHH context (R1) ================ position count methylated count unmethylated % methylation coverage 1 166964 254330 39.63 421294 2 115368 271506 29.82 386874 3 77782 307517 20.19 385299 4 75262 326282 18.74 401544 5 73832 382465 16.18 456297 6 63773 414227 13.34 478000 7 44814 518884 7.95 563698 8 43677 558829 7.25 602506 9 32977 518096 5.98 551073 10 33476 506681 6.20 540157 11 45185 507329 8.18 552514 12 37248 512649 6.77 549897 13 41811 525321 7.37 567132 14 47346 538072 8.09 585418 15 39074 549194 6.64 588268 16 38912 556540 6.53 595452 17 46717 559286 7.71 606003 18 37261 580900 6.03 618161 19 37338 589150 5.96 626488 20 45412 606560 6.97 651972 21 38309 608468 5.92 646777 22 42558 605053 6.57 647611 23 46365 606704 7.10 653069 24 38540 606922 5.97 645462 25 42451 610831 6.50 653282 26 47138 615797 7.11 662935 27 39365 618733 5.98 658098 28 38623 621010 5.86 659633 29 46349 619527 6.96 665876 30 38520 615459 5.89 653979 31 39998 608138 6.17 648136 32 43701 610742 6.68 654443 33 38409 612199 5.90 650608 34 44949 615539 6.81 660488 35 46179 610155 7.04 656334 36 39331 617125 5.99 656456 37 38701 610816 5.96 649517 38 46465 615175 7.02 661640 39 38174 612970 5.86 651144 40 39218 610419 6.04 649637 41 46522 612356 7.06 658878 42 40139 617984 6.10 658123 43 43664 608830 6.69 652494 44 45370 614013 6.88 659383 45 41497 608946 6.38 650443 46 40003 608674 6.17 648677 47 44638 608420 6.84 653058 48 37189 608849 5.76 646038 49 37891 601665 5.92 639556 50 44137 599478 6.86 643615 51 37079 592910 5.89 629989 52 40844 593571 6.44 634415 53 44484 588731 7.03 633215 54 37588 589462 5.99 627050 55 39084 586506 6.25 625590 56 44908 583852 7.14 628760 57 36674 590856 5.84 627530 58 37779 585437 6.06 623216 59 44353 585947 7.04 630300 60 36688 578705 5.96 615393 61 40026 573363 6.53 613389 62 42496 566620 6.98 609116 63 36341 561123 6.08 597464 64 39686 558220 6.64 597906 65 41420 553034 6.97 594454 66 35700 548720 6.11 584420 67 35925 544136 6.19 580061 68 40038 539297 6.91 579335 69 34999 539013 6.10 574012 70 35411 533109 6.23 568520 71 40500 531169 7.08 571669 72 35191 528887 6.24 564078 73 39391 520485 7.04 559876 74 40638 518340 7.27 558978 75 34912 513148 6.37 548060 76 35167 508983 6.46 544150 77 40824 504041 7.49 544865 78 32935 501882 6.16 534817 79 34395 496728 6.48 531123 80 39443 492466 7.42 531909 81 35139 486042 6.74 521181 82 36626 480232 7.09 516858 83 39470 480549 7.59 520019 84 34465 473680 6.78 508145 85 33591 466890 6.71 500481 86 36897 463536 7.37 500433 87 31297 459569 6.38 490866 88 31679 457025 6.48 488704 89 36793 452385 7.52 489178 90 31544 449904 6.55 481448 91 33274 442651 6.99 475925 92 35618 442047 7.46 477665 93 30883 437325 6.60 468208 94 31397 433626 6.75 465023 95 35387 427599 7.64 462986 96 29575 421485 6.56 451060 97 29433 410168 6.70 439601 98 32594 382065 7.86 414659 99 17636 266004 6.22 283640 100 19937 236044 7.79 255981 101 31481 387075 7.52 418556 CpG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 77724 88160 46.85 165884 2 66846 76313 46.69 143159 3 69871 84334 45.31 154205 4 63910 93336 40.64 157246 5 27923 120887 18.76 148810 6 17242 66428 20.61 83670 7 14881 71593 17.21 86474 8 15718 67004 19.00 82722 9 13599 57411 19.15 71010 10 15281 64068 19.26 79349 11 16039 63163 20.25 79202 12 15487 61410 20.14 76897 13 16072 58091 21.67 74163 14 16365 60498 21.29 76863 15 15994 54247 22.77 70241 16 15104 52560 22.32 67664 17 18681 56914 24.71 75595 18 17439 53857 24.46 71296 19 16635 53514 23.71 70149 20 15602 52236 23.00 67838 21 16188 50550 24.26 66738 22 16314 53053 23.52 69367 23 15438 50331 23.47 65769 24 14637 49190 22.93 63827 25 16206 50562 24.27 66768 26 14800 48790 23.27 63590 27 16300 48719 25.07 65019 28 14633 45969 24.15 60602 29 15315 48582 23.97 63897 30 14771 45409 24.54 60180 31 14201 46905 23.24 61106 32 13944 44216 23.98 58160 33 15457 44689 25.70 60146 34 14937 46591 24.28 61528 35 18449 49623 27.10 68072 36 14577 43922 24.92 58499 37 15291 45901 24.99 61192 38 13968 44184 24.02 58152 39 14084 43162 24.60 57246 40 15483 43089 26.43 58572 41 13598 42018 24.45 55616 42 13958 43224 24.41 57182 43 13676 42285 24.44 55961 44 13005 41035 24.07 54040 45 15835 44894 26.07 60729 46 12628 38283 24.80 50911 47 12512 39487 24.06 51999 48 13172 38691 25.40 51863 49 12295 40540 23.27 52835 50 11808 36835 24.27 48643 51 11672 36242 24.36 47914 52 12096 37115 24.58 49211 53 11999 36140 24.93 48139 54 11744 36356 24.42 48100 55 11752 34284 25.53 46036 56 11112 33968 24.65 45080 57 11600 33925 25.48 45525 58 11072 34478 24.31 45550 59 10297 31973 24.36 42270 60 10534 32240 24.63 42774 61 9690 31634 23.45 41324 62 9655 30377 24.12 40032 63 10267 29843 25.60 40110 64 9805 30509 24.32 40314 65 9837 28354 25.76 38191 66 10166 29912 25.37 40078 67 9395 30007 23.84 39402 68 10198 31164 24.66 41362 69 9534 29400 24.49 38934 70 9065 28527 24.11 37592 71 9153 26220 25.88 35373 72 8805 26225 25.14 35030 73 8695 26782 24.51 35477 74 8025 25875 23.67 33900 75 8215 26542 23.64 34757 76 8510 25137 25.29 33647 77 8172 25215 24.48 33387 78 8088 25290 24.23 33378 79 7716 23998 24.33 31714 80 7646 23417 24.61 31063 81 7815 23964 24.59 31779 82 7641 23687 24.39 31328 83 7800 22659 25.61 30459 84 8548 24513 25.86 33061 85 7486 23476 24.18 30962 86 7178 23046 23.75 30224 87 7344 22475 24.63 29819 88 7211 21999 24.69 29210 89 7546 22284 25.30 29830 90 7601 22524 25.23 30125 91 7164 21537 24.96 28701 92 6667 21170 23.95 27837 93 6990 21578 24.47 28568 94 7121 21121 25.21 28242 95 6906 20712 25.01 27618 96 6748 20573 24.70 27321 97 7357 21523 25.47 28880 98 6543 19484 25.14 26027 99 5949 0 100.00 5949 CHG context (R2) ================ position count methylated count unmethylated % methylation coverage 1 23596 108364 17.88 131960 2 23421 109834 17.58 133255 3 22341 112439 16.58 134780 4 24046 121506 16.52 145552 5 3899 219579 1.74 223478 6 2705 269275 0.99 271980 7 1921 150111 1.26 152032 8 1786 163301 1.08 165087 9 1807 134851 1.32 136658 10 1821 128979 1.39 130800 11 2748 175386 1.54 178134 12 1872 137074 1.35 138946 13 1868 136679 1.35 138547 14 1975 131029 1.48 133004 15 1860 127374 1.44 129234 16 1698 119451 1.40 121149 17 1916 127731 1.48 129647 18 2617 112343 2.28 114960 19 1841 111841 1.62 113682 20 1809 110225 1.61 112034 21 2560 105110 2.38 107670 22 1924 117006 1.62 118930 23 1790 114093 1.54 115883 24 1561 102142 1.51 103703 25 1791 105253 1.67 107044 26 1903 111143 1.68 113046 27 1786 103442 1.70 105228 28 1792 99499 1.77 101291 29 1775 107257 1.63 109032 30 1854 100293 1.82 102147 31 1644 97017 1.67 98661 32 1653 99804 1.63 101457 33 1848 118662 1.53 120510 34 1623 96979 1.65 98602 35 1724 100344 1.69 102068 36 1662 99312 1.65 100974 37 1582 91952 1.69 93534 38 1773 98653 1.77 100426 39 1791 93402 1.88 95193 40 1794 90772 1.94 92566 41 1805 87358 2.02 89163 42 1757 82306 2.09 84063 43 1998 85962 2.27 87960 44 1609 85127 1.86 86736 45 1580 77767 1.99 79347 46 1657 77781 2.09 79438 47 1739 80611 2.11 82350 48 1634 76534 2.09 78168 49 1719 80066 2.10 81785 50 1841 77921 2.31 79762 51 1635 72458 2.21 74093 52 1716 71282 2.35 72998 53 2061 79109 2.54 81170 54 1644 72070 2.23 73714 55 1641 73206 2.19 74847 56 1542 71727 2.10 73269 57 2078 69114 2.92 71192 58 1545 70085 2.16 71630 59 1302 68833 1.86 70135 60 1495 66023 2.21 67518 61 1216 65628 1.82 66844 62 1130 68998 1.61 70128 63 1046 69420 1.48 70466 64 921 61567 1.47 62488 65 1014 66585 1.50 67599 66 1014 59834 1.67 60848 67 984 65904 1.47 66888 68 921 64660 1.40 65581 69 1007 61105 1.62 62112 70 935 61574 1.50 62509 71 991 63132 1.55 64123 72 882 58098 1.50 58980 73 864 57880 1.47 58744 74 865 59918 1.42 60783 75 822 56618 1.43 57440 76 831 55296 1.48 56127 77 865 59144 1.44 60009 78 860 56247 1.51 57107 79 912 55434 1.62 56346 80 807 53612 1.48 54419 81 876 51605 1.67 52481 82 845 51698 1.61 52543 83 851 51977 1.61 52828 84 780 49609 1.55 50389 85 906 55746 1.60 56652 86 853 50677 1.66 51530 87 841 50410 1.64 51251 88 805 47663 1.66 48468 89 916 51490 1.75 52406 90 848 50098 1.66 50946 91 830 51240 1.59 52070 92 808 49294 1.61 50102 93 781 46796 1.64 47577 94 750 46265 1.60 47015 95 841 47212 1.75 48053 96 974 44655 2.13 45629 97 824 45106 1.79 45930 98 671 44151 1.50 44822 99 666 0 100.00 666 CHH context (R2) ================ position count methylated count unmethylated % methylation coverage 1 54954 147007 27.21 201961 2 50416 120897 29.43 171313 3 53324 123132 30.22 176456 4 55029 119059 31.61 174088 5 23912 241833 9.00 265745 6 23629 331490 6.65 355119 7 24608 443997 5.25 468605 8 21965 439344 4.76 461309 9 25944 412124 5.92 438068 10 23277 420424 5.25 443701 11 23355 414840 5.33 438195 12 21502 387324 5.26 408826 13 21369 402019 5.05 423388 14 21844 404196 5.13 426040 15 21027 414529 4.83 435556 16 19366 396360 4.66 415726 17 20716 399316 4.93 420032 18 20027 396937 4.80 416964 19 18457 368910 4.76 387367 20 21362 390415 5.19 411777 21 20063 365267 5.21 385330 22 21284 354874 5.66 376158 23 20646 347756 5.60 368402 24 19004 331991 5.41 350995 25 21139 332722 5.97 353861 26 19527 328476 5.61 348003 27 20267 351443 5.45 371710 28 19191 337658 5.38 356849 29 19655 334688 5.55 354343 30 20994 319890 6.16 340884 31 19815 310219 6.00 330034 32 19491 301048 6.08 320539 33 20797 298221 6.52 319018 34 19851 298291 6.24 318142 35 19369 305828 5.96 325197 36 18216 307384 5.59 325600 37 18396 299092 5.79 317488 38 19252 311755 5.82 331007 39 19411 288204 6.31 307615 40 18291 299982 5.75 318273 41 19247 282938 6.37 302185 42 18945 288205 6.17 307150 43 19195 271355 6.61 290550 44 17470 272426 6.03 289896 45 18147 271106 6.27 289253 46 17410 272130 6.01 289540 47 16637 266979 5.87 283616 48 17461 260048 6.29 277509 49 16620 263356 5.94 279976 50 16765 257590 6.11 274355 51 16756 249422 6.30 266178 52 15792 236211 6.27 252003 53 15735 239341 6.17 255076 54 14612 232925 5.90 247537 55 14877 240317 5.83 255194 56 14778 233085 5.96 247863 57 14485 237502 5.75 251987 58 13623 229959 5.59 243582 59 14226 220956 6.05 235182 60 13622 226444 5.67 240066 61 14488 214684 6.32 229172 62 13480 212665 5.96 226145 63 12900 213877 5.69 226777 64 13664 207531 6.18 221195 65 12956 211303 5.78 224259 66 12582 204121 5.81 216703 67 12497 203616 5.78 216113 68 12384 210305 5.56 222689 69 12867 205951 5.88 218818 70 12183 199021 5.77 211204 71 12012 194953 5.80 206965 72 12619 194454 6.09 207073 73 12271 190547 6.05 202818 74 11572 191584 5.70 203156 75 11753 191006 5.80 202759 76 11103 184051 5.69 195154 77 12281 183514 6.27 195795 78 11931 185586 6.04 197517 79 11498 188615 5.75 200113 80 11779 181207 6.10 192986 81 11992 182003 6.18 193995 82 11467 177850 6.06 189317 83 10918 177624 5.79 188542 84 11166 177821 5.91 188987 85 10627 173517 5.77 184144 86 10496 172923 5.72 183419 87 10533 171102 5.80 181635 88 10271 166404 5.81 176675 89 10377 164737 5.93 175114 90 10467 165796 5.94 176263 91 9903 164348 5.68 174251 92 9601 162494 5.58 172095 93 9475 159906 5.59 169381 94 8989 157932 5.39 166921 95 9497 154159 5.80 163656 96 9096 153943 5.58 163039 97 8772 153882 5.39 162654 98 8170 146392 5.29 154562 99 6073 0 100.00 6073