Bismark Processing Report

/gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-220_S32_L004_R1_001_val_1.fq.gz and /gscratch/srlab/strigg/data/Pgenr/FASTQS/EPI-220_S32_L004_R2_001_val_2.fq.gz

Data processed at 23:21 on 2018-11-15


Sequence pairs analysed in total 15670592
Paired-end alignments with a unique best hit 8965044
Pairs without alignments under any condition 3965068
Pairs that did not map uniquely 2740480
Genomic sequence context not extractable (edges of chromosomes) 45901

Cytosine Methylation

Total C's analysed 281543449
Methylated C's in CpG context 9299849
Methylated C's in CHG context 1595648
Methylated C's in CHH context 9811242
Methylated C's in Unknown context 313784
Unmethylated C's in CpG context 32169419
Unmethylated C's in CHG context 59405917
Unmethylated C's in CHH context 169261374
Unmethylated C's in Unknown context 1378759
Percentage methylation (CpG context) 22.4%
Percentage methylation (CHG context) 2.6%
Percentage methylation (CHH context) 5.5%
Methylated C's in Unknown context N/A%

Alignment to Individual Bisulfite Strands

OT 4392639 original top strand
CTOT 0 complementary to original top strand
CTOB 0 complementary to original bottom strand
OB 4526504 original bottom strand