EPI-215_S31_L004_R1_001_val_1_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: paired-end (SAM format) Output specified: strand-specific (default) No overlapping methylation calls specified Processed 8093570 lines in total Total number of methylation call strings processed: 16187140 Final Cytosine Methylation Report ================================= Total number of C's analysed: 174479557 Total methylated C's in CpG context: 7121333 Total methylated C's in CHG context: 1049286 Total methylated C's in CHH context: 4659213 Total C to T conversions in CpG context: 17011312 Total C to T conversions in CHG context: 36507272 Total C to T conversions in CHH context: 108131141 C methylated in CpG context: 29.5% C methylated in CHG context: 2.8% C methylated in CHH context: 4.1%